repo stringlengths 5 92 | file_url stringlengths 80 287 | file_path stringlengths 5 197 | content stringlengths 0 32.8k | language stringclasses 1
value | license stringclasses 7
values | commit_sha stringlengths 40 40 | retrieved_at stringdate 2026-01-04 15:37:27 2026-01-04 17:58:21 | truncated bool 2
classes |
|---|---|---|---|---|---|---|---|---|
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/authenticated_user_serializer.rb | app/serializers/authenticated_user_serializer.rb | class AuthenticatedUserSerializer < ActiveModel::Serializer
attributes :name,
:email,
:created_at,
:picture,
:sha,
:editor,
:admin,
:has_papers_as_submittor,
:has_papers_as_reviewer,
:has_papers_as_ed... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/assignment_serializer.rb | app/serializers/assignment_serializer.rb | class AssignmentSerializer < BaseSerializer
attributes :sha,
:role,
:public,
:completed,
:reviewer_accept
has_one :user, serializer:PublicUserSerializer
private
def filter(*)
results = super
results = results - [:user] unless object.m... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/paper_serializer.rb | app/serializers/paper_serializer.rb | class PaperSerializer < BaseSerializer
attributes :typed_provider_id,
:doi,
:user_permissions,
:state,
:submitted_at,
:title,
:authors,
:pending_issues_count
has_one :submittor, serializer:BasicUserSerializer
def subm... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/full_paper_serializer.rb | app/serializers/full_paper_serializer.rb | class FullPaperSerializer < PaperSerializer
attributes :paper_id,
:document_location
has_many :assigned_users
has_many :versions, each_serializer: BasicPaperSerializer
def paper_id
object.id
end
def versions
object.all_versions
end
def assigned_users
object.assignments
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/base_serializer.rb | app/serializers/base_serializer.rb |
class BaseSerializer < ActiveModel::Serializer
def current_user
scope
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/basic_paper_serializer.rb | app/serializers/basic_paper_serializer.rb | class BasicPaperSerializer < BaseSerializer
attributes :typed_provider_id,
:version
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/user_serializer.rb | app/serializers/user_serializer.rb | class UserSerializer < BaseSerializer
# Make sure that a user is never fully serialized because that would
# Expose too much public information
def initialize(*)
raise "No serializer supplied for user"
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/public_user_serializer.rb | app/serializers/public_user_serializer.rb | class PublicUserSerializer < BasicUserSerializer
attributes :email,
:created_at,
:picture,
:sha
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/annotation_serializer.rb | app/serializers/annotation_serializer.rb | class AnnotationSerializer < BaseSerializer
attributes :id,
:paper_id,
:state,
:parent_id,
:body,
:assignment,
:created_at,
:page,
:xStart,
:xEnd,
:yStart,
:yEnd
has_many :... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/serializers/preview_paper_serializer.rb | app/serializers/preview_paper_serializer.rb | # Serialize a Paper in the format for previewing documents
class PreviewPaperSerializer < BaseSerializer
attributes :typed_provider_id,
:title,
:summary,
:document_location,
:authors,
:is_existing,
:is_self_owned
def is_self_owned
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/helpers/sessions_helper.rb | app/helpers/sessions_helper.rb | module SessionsHelper
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/helpers/comments_helper.rb | app/helpers/comments_helper.rb | module CommentsHelper
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/helpers/users_helper.rb | app/helpers/users_helper.rb | module UsersHelper
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/helpers/application_helper.rb | app/helpers/application_helper.rb | module ApplicationHelper
def current_user_roles
user = current_user
if (!user)
''
elsif user.admin? && user.editor?
' (Admin, Editor)'
elsif user.admin?
' (Admin)'
elsif user.editor?
' (Editor)'
else
''
end
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/helpers/papers_helper.rb | app/helpers/papers_helper.rb | module PapersHelper
def state_badge_for(paper)
return image_tag('badges/unknown.svg') unless paper
case paper.state
when "submitted"
image_tag('badges/submitted.svg')
when "under_review"
image_tag('badges/review.svg')
when "review_completed"
image_tag('badges/co... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/helpers/home_helper.rb | app/helpers/home_helper.rb | module HomeHelper
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/home_controller.rb | app/controllers/home_controller.rb | class HomeController < ApplicationController
before_filter :authentication_required, only: [:index_with_auth]
def index
render :index
end
def index_with_auth
render :index
end
def temp_home
papers = Paper.published
render 'temp_home', locals: { papers: papers }
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/papers_controller.rb | app/controllers/papers_controller.rb | class PapersController < ApplicationController
respond_to :json
def badge
if stale?(paper)
respond_to do |format|
format.html { @paper = paper; render layout:false }
format.json { render json: { state: paper.state } }
end
end
end
private
def paper
@paper ||= Paper... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/admin_controller.rb | app/controllers/admin_controller.rb | class AdminController < ApplicationController
respond_to :json
layout false
before_filter :require_admin
def index
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/feed_controller.rb | app/controllers/feed_controller.rb | class FeedController < ApplicationController
# arXiv metadata https://arxiv.org/help/bib_feed
def arxiv
papers = Paper.published
.where(provider_type: Provider::ArxivProvider.type)
.where('updated_at >= ?', 3.months.ago)
attributes = papers.map { |paper| arx... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/sessions_controller.rb | app/controllers/sessions_controller.rb | require 'open-uri'
class SessionsController < ApplicationController
def new
end
def create
logger.debug("#create")
user = User.from_omniauth(env["omniauth.auth"])
#FIXME this needs to go in a worker (or better still, come back in the OAuth hash...)
name = orcid_name_for(user.uid)
user.upda... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/application_controller.rb | app/controllers/application_controller.rb | class ApplicationController < ActionController::Base
# Prevent CSRF attacks by raising an exception.
# For APIs, you may want to use :null_session instead.
# protect_from_forgery with: :exception
# before_filter :require_user
class HttpError < StandardError
def initialize(status_code, text)
@status... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/api/v1/users_controller.rb | app/controllers/api/v1/users_controller.rb | class Api::V1::UsersController < Api::V1::ApplicationController
respond_to :json
before_filter :require_user, except: [ :show ]
before_filter :require_editor, only: [ :lookup ]
def show
if current_user
respond_with current_user, serializer:AuthenticatedUserSerializer
else
render json:{... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/api/v1/annotations_controller.rb | app/controllers/api/v1/annotations_controller.rb | class Api::V1::AnnotationsController < Api::V1::ApplicationController
respond_to :json
before_filter :require_user, except: [:index, :all]
before_filter :require_editor, only: [:update]
# Root issues
def index
if can? :view_annotations, paper
render json: paper.issues
else
render... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/api/v1/papers_controller.rb | app/controllers/api/v1/papers_controller.rb | class Api::V1::PapersController < Api::V1::ApplicationController
respond_to :json
before_filter :require_user, except: [ :recent, :search, :index, :show, :versions ]
before_filter :require_editor, only: [ :destroy, :transition ]
def index
recent
end
def show
#@todo
# ability = ability_wit... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/api/v1/assignments_controller.rb | app/controllers/api/v1/assignments_controller.rb | class Api::V1::AssignmentsController < Api::V1::ApplicationController
respond_to :json
before_filter :require_user, except: [ :index ]
before_filter :require_editor, only: [ :create, :destroy ]
def index
render json:paper.assignments, status: :ok, location: paper_review_url(paper)
end
def create
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/controllers/api/v1/application_controller.rb | app/controllers/api/v1/application_controller.rb | class Api::V1::ApplicationController < ApplicationController
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/models/provider.rb | app/models/provider.rb | # Lookup class for Providers
class Provider
SEPARATOR = ':'
class << self
def parse_identifier(identifier)
raise Error::InvalidIdentifier.new unless identifier.present?
provider_type, identifier = identifier.split(SEPARATOR, 2)
raise Error::InvalidIdentifier.new unless identifier.present?
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/models/annotation.rb | app/models/annotation.rb | class Annotation < ActiveRecord::Base
include AASM
belongs_to :paper, inverse_of: :annotations
belongs_to :assignment, inverse_of: :annotations
has_many :responses, class_name:'Annotation', foreign_key:'parent_id'
belongs_to :parent, class_name:'Annotation', foreign_key:'parent_id'
scope :root_... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/models/ability.rb | app/models/ability.rb | class Ability
include CanCan::Ability
def initialize(user, paper=nil, annotation=nil)
# HEADS UP - ordering matters here because of how CanCan defines abilities
if user
initialize_annotation(user, annotation)
initialize_author(user, paper)
initialize_collaborator(user, paper)
initi... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/models/assignment.rb | app/models/assignment.rb | class Assignment < ActiveRecord::Base
belongs_to :user, inverse_of: :assignments
belongs_to :paper, inverse_of: :assignments
has_many :annotations, inverse_of: :assignment
# set when the paper is being updated from an original
attr_accessor :copied
validates :role,
inclusion:{ ... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/models/paper.rb | app/models/paper.rb |
class Paper < ActiveRecord::Base
include AASM
has_many :annotations, inverse_of: :paper, dependent: :destroy
has_many :assignments, inverse_of: :paper, dependent: :destroy do
def for_user(user, role=nil)
if role
where(user:user, role:role).first
else
where(user:user).first
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/models/user.rb | app/models/user.rb | class User < ActiveRecord::Base
has_many :assignments, inverse_of: :user
has_many :assignments_as_collaborator, -> { where(role:'collaborator') }, class_name:'Assignment', inverse_of: :user
has_many :assignments_as_reviewer, -> { where(role:'reviewer') }, class_name:'Assignment', inverse_of: :user
has_m... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/models/provider/arxiv_provider.rb | app/models/provider/arxiv_provider.rb | class Provider
class ArxivProvider < BaseProvider
self.type = :arxiv
self.version_separator = 'v'
class << self
def get_attributes(id)
manuscript = Arxiv.get(id.to_s)
attributes_from_manuscript(manuscript)
rescue Arxiv::Error::ManuscriptNotFound => ex
raise Error::... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/models/provider/test_provider.rb | app/models/provider/test_provider.rb | # Used for running specs
class Provider
class TestProvider < BaseProvider
self.type = :test
self.version_separator = '-'
class << self
def get_attributes(id)
parsed = parse_identifier(id)
{
provider_type: self.type,
provider_id: parsed[:provider... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/models/provider/base_provider.rb | app/models/provider/base_provider.rb | class Provider
class BaseProvider
class_attribute :type
class_attribute :version_separator
class << self
def full_identifier(**params)
result = params[:provider_id].dup
result << "#{version_separator}#{params[:version]}" if params[:version]
result
end
def pars... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/mailers/notification_mailer.rb | app/mailers/notification_mailer.rb | class NotificationMailer < ApplicationMailer
def notification(user, paper, text, subject='Paper Updated')
@paper = paper
@link = paper_review_url(paper)
@text = text
subject = "#{paper.title} - #{subject}"
mail to:user, subject:subject
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/app/mailers/application_mailer.rb | app/mailers/application_mailer.rb | class ApplicationMailer < ActionMailer::Base
layout 'mailer'
def mail(headers = {}, &block)
set_users(headers)
@subject = headers[:subject] = "[TheOJ] #{headers[:subject]}"
super unless headers[:to].empty?
end
def full_email_for_user(user)
if user.name.present? && user.email.present?
%... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/seeds.rb | db/seeds.rb | # This file should contain all the record creation needed to seed the database with its default values.
# The data can then be loaded with the rake db:seed (or created alongside the db with db:setup).
#
# Examples:
#
# cities = City.create([{ name: 'Chicago' }, { name: 'Copenhagen' }])
# Mayor.create(name: 'Emanuel... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/schema.rb | db/schema.rb | # encoding: UTF-8
# This file is auto-generated from the current state of the database. Instead
# of editing this file, please use the migrations feature of Active Record to
# incrementally modify your database, and then regenerate this schema definition.
#
# Note that this schema.rb definition is the authoritative sou... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150210150759_unique_paper_indexes.rb | db/migrate/20150210150759_unique_paper_indexes.rb | class UniquePaperIndexes < ActiveRecord::Migration
def up
remove_index :papers, ["arxiv_id"]
add_index :papers, ["arxiv_id"], unique:true
remove_index :papers, ["sha"]
add_index :papers, ["sha"], unique:true
end
def down
remove_index :papers, ["arxiv_id"]
add_index :papers, [... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20140515135144_rename_comments.rb | db/migrate/20140515135144_rename_comments.rb | class RenameComments < ActiveRecord::Migration
def change
rename_table :comments, :annotations
Annotation.reset_column_information
remove_index("annotations", :name => "index_comment_user_id")
remove_index("annotations", :name => "index_comment_paper_id")
remove_index("annotations", :nam... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20140712015520_add_assigned_user_to_paper.rb | db/migrate/20140712015520_add_assigned_user_to_paper.rb | class AddAssignedUserToPaper < ActiveRecord::Migration
def change
add_column :papers, :fao_id, :integer
add_index :papers, ["fao_id"]
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20161228023050_reviewer_accept_to_string.rb | db/migrate/20161228023050_reviewer_accept_to_string.rb | class ReviewerAcceptToString < ActiveRecord::Migration
def change
change_column :assignments, :reviewer_accept, :string, limit: 20
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150626190052_remove_paper_sha.rb | db/migrate/20150626190052_remove_paper_sha.rb | class RemovePaperSha < ActiveRecord::Migration
def change
remove_index :papers, name: "index_papers_on_sha"
remove_column :papers, :sha
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150512025202_add_sha_to_assignment.rb | db/migrate/20150512025202_add_sha_to_assignment.rb | class AddShaToAssignment < ActiveRecord::Migration
def change
add_column :assignments, :sha, :string
reversible do |dir|
dir.up do
Assignment.find_each do |a|
a.update_attributes!(sha:SecureRandom.hex)
end
end
end
change_column_null :assignments, :sha, false
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150505233549_add_email_to_user.rb | db/migrate/20150505233549_add_email_to_user.rb | class AddEmailToUser < ActiveRecord::Migration
def change
add_column :users, :email, :string, limit:255
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150626190032_change_from_arxiv_id_to_source_id.rb | db/migrate/20150626190032_change_from_arxiv_id_to_source_id.rb | class ChangeFromArxivIdToSourceId < ActiveRecord::Migration
def change
remove_index :papers, name: "index_papers_on_arxiv_id_and_version"
rename_column :papers, :arxiv_id, :provider_id
add_column :papers, :provider_type, :string, limit:10
reversible do |dir|
dir.up do
execute('DE... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150224004849_fix_annotation_state.rb | db/migrate/20150224004849_fix_annotation_state.rb | class FixAnnotationState < ActiveRecord::Migration
def up
Annotation.all.where(state:'new').update_all(state:'unresolved')
end
def down
Annotation.all.where(state:'unresolved').update_all(state:'new')
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20140211220942_create_users.rb | db/migrate/20140211220942_create_users.rb | class CreateUsers < ActiveRecord::Migration
def change
create_table :users do |t|
t.string :provider
t.string :uid
t.string :name
t.boolean :admin, :default => false
t.boolean :editor, :default => false
t.timestamps
end
add_index "users", ["provider"], :name => "index... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150526184138_add_arxiv_id_index.rb | db/migrate/20150526184138_add_arxiv_id_index.rb | class AddArxivIdIndex < ActiveRecord::Migration
def change
remove_index :papers, name: "index_papers_on_arxiv_id"
add_index :papers, [:arxiv_id, :version], unique: true
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20140212012504_create_papers.rb | db/migrate/20140212012504_create_papers.rb | class CreatePapers < ActiveRecord::Migration
def change
create_table :papers do |t|
t.integer :user_id
t.string :location
t.string :state
t.datetime :submitted_at
t.string :title
t.integer :version, :default => 1
t.timestamps
end
add_index "papers", ["user_id... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20161009043324_add_doi_to_paper.rb | db/migrate/20161009043324_add_doi_to_paper.rb | class AddDoiToPaper < ActiveRecord::Migration
def change
add_column :papers, :doi, :string
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150201224917_add_arxiv_details_to_paper.rb | db/migrate/20150201224917_add_arxiv_details_to_paper.rb | class AddArxivDetailsToPaper < ActiveRecord::Migration
def change
add_column :papers, :arxiv_id, :string
add_column :papers, :summary, :text
add_column :papers, :author_list, :text
add_index :papers, ["arxiv_id"]
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150525171135_create_fks_and_refactor.rb | db/migrate/20150525171135_create_fks_and_refactor.rb | class CreateFksAndRefactor < ActiveRecord::Migration
def change
delete_data
refactor_columns
create_foreign_keys
create_assignees
end
def delete_data
Annotation.delete_all
Assignment.delete_all
end
def refactor_columns
remove_index :annotations, name:'index_annotation_user_id'... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150202233833_add_location_data_to_annotation.rb | db/migrate/20150202233833_add_location_data_to_annotation.rb | class AddLocationDataToAnnotation < ActiveRecord::Migration
def change
add_column :annotations, :page, :integer
add_column :annotations, :xStart, :float
add_column :annotations, :yStart, :float
add_column :annotations, :xEnd, :float
add_column :annotations, :yEnd, :float
end... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20140430233202_create_assignments.rb | db/migrate/20140430233202_create_assignments.rb | class CreateAssignments < ActiveRecord::Migration
def change
create_table :assignments do |t|
t.integer :user_id
t.integer :paper_id
t.string :role
t.integer :assignee_id
t.timestamps
end
add_index "assignments", ["user_id"], :name => "index_assignment_user_id"
add_i... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20140212023345_create_comments.rb | db/migrate/20140212023345_create_comments.rb | class CreateComments < ActiveRecord::Migration
def change
create_table :comments do |t|
t.integer :user_id
t.integer :paper_id
t.string :state
t.integer :parent_id
t.string :category
t.text :body
t.timestamps
end
add_index "comments", ["user_id"], :name => "i... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20140609021717_add_sha_to_user.rb | db/migrate/20140609021717_add_sha_to_user.rb | class AddShaToUser < ActiveRecord::Migration
def change
add_column :users, :sha, :string
add_index :users, ["sha"]
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150404222351_remove.rb | db/migrate/20150404222351_remove.rb | class Remove < ActiveRecord::Migration
def up
execute <<-SQL
UPDATE Papers
SET state='submitted'
WHERE state='pending'
SQL
end
def down
execute <<-SQL
UPDATE Papers
SET state='pending'
WHERE state='submitted'
SQL
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150630032056_rename_to_document_location_and_authors.rb | db/migrate/20150630032056_rename_to_document_location_and_authors.rb | class RenameToDocumentLocationAndAuthors < ActiveRecord::Migration
def change
rename_column :papers, :location, :document_location
rename_column :papers, :author_list, :authors
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150607033009_remove_submitted_at_field.rb | db/migrate/20150607033009_remove_submitted_at_field.rb | class RemoveSubmittedAtField < ActiveRecord::Migration
def change
remove_column :papers, :submitted_at
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150808025904_add_complete_status_to_assignment.rb | db/migrate/20150808025904_add_complete_status_to_assignment.rb | class AddCompleteStatusToAssignment < ActiveRecord::Migration
def change
add_column :assignments, :reviewer_accept, :boolean, null:true, default:nil
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20140608024335_add_sha_to_paper.rb | db/migrate/20140608024335_add_sha_to_paper.rb | class AddShaToPaper < ActiveRecord::Migration
def change
add_column :papers, :sha, :string
add_index :papers, ["sha"]
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20140211223942_add_oauth_tokens_to_users.rb | db/migrate/20140211223942_add_oauth_tokens_to_users.rb | class AddOauthTokensToUsers < ActiveRecord::Migration
def change
add_column :users, :oauth_token, :string
add_column :users, :oauth_expires_at, :datetime
add_column :users, :extra, :text
add_column :users, :picture, :string
add_index :users, ["oauth_token"]
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/db/migrate/20150616041205_add_public_and_completed_to_assignments.rb | db/migrate/20150616041205_add_public_and_completed_to_assignments.rb | class AddPublicAndCompletedToAssignments < ActiveRecord::Migration
def change
add_column :assignments, :public, :boolean, null:false, default:false
add_column :assignments, :completed, :boolean, null:false, default:false
reversible do |dir|
dir.up do
Assignment.reset_column_information
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/rails_helper.rb | spec/rails_helper.rb | # This file is copied to spec/ when you run 'rails generate rspec:install'
ENV["RAILS_ENV"] ||= 'test'
require 'spec_helper'
require File.expand_path("../../config/environment", __FILE__)
require 'rspec/rails'
require 'cancan/matchers'
require 'action_controller/serialization_test_case'
# Requires supporting ruby file... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/spec_helper.rb | spec/spec_helper.rb | # This file was generated by the `rails generate rspec:install` command. Conventionally, all
# specs live under a `spec` directory, which RSpec adds to the `$LOAD_PATH`.
# The generated `.rspec` file contains `--require spec_helper` which will cause this
# file to always be loaded, without a need to explicitly require ... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/support/spec_helpers.rb | spec/support/spec_helpers.rb | module SpecHelpers
def fixture_path
File.joing(__FILE__, '../../..', 'fixtures')
end
def fixture(filename)
filename = File.join(fixture_path, filename)
File.open(filename, 'r')
end
def fixture_text(filename)
fixture(filename).readlines.join
end
def hash_from_json(json)
return JSON.... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/support/has_sent_mail_patch.rb | spec/support/has_sent_mail_patch.rb |
# Existing matchers don't check multipart emails correctly
module Mail
module Matchers
class HasSentEmailMatcher
def matches_on_body?(delivery)
delivery.body == @body || delivery.body.encoded == @body
end
def matches_on_body_matcher?(delivery)
(@body_matcher.match delivery.bo... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/support/controller_spec_helpers.rb | spec/support/controller_spec_helpers.rb | require 'active_support/concern'
module ControllerSpecHelpers
extend ActiveSupport::Concern
attr_reader :current_user
def authenticate(user=nil)
if user.is_a?(Symbol)
user = create(user)
elsif user.nil?
user = create(:user)
end
allow(controller).to receive(:current_user).and_return(... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/serializers/basic_paper_serializer_spec.rb | spec/serializers/basic_paper_serializer_spec.rb | require "rails_helper"
describe BasicPaperSerializer do
it "should initialize properly" do
paper = build(:paper, document_location:"https://example.com", title:"Teh awesomeness")
serializer = BasicPaperSerializer.new(paper)
hash = hash_from_json(serializer.to_json)
expect(hash.keys).to contain_exac... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/serializers/public_user_serializer_spec.rb | spec/serializers/public_user_serializer_spec.rb | require "rails_helper"
describe PublicUserSerializer do
it "should have the correct keys" do
user = create(:user)
serializer = PublicUserSerializer.new(user)
hash = hash_from_json(serializer.to_json)
expect(hash.keys).to contain_exactly("name", "email", "created_at", "picture", "sha")
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/serializers/authenticated_user_serializer_spec.rb | spec/serializers/authenticated_user_serializer_spec.rb | require "rails_helper"
describe AuthenticatedUserSerializer do
it "should have the correct keys" do
user = create(:user)
serializer = AuthenticatedUserSerializer.new(user)
hash = hash_from_json(serializer.to_json)
expect(hash.keys).to contain_exactly("name", "email",
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/serializers/assignment_serializer_spec.rb | spec/serializers/assignment_serializer_spec.rb | require "rails_helper"
describe AssignmentSerializer do
it "should initialize properly" do
assignment = create(:assignment)
serializer = AssignmentSerializer.new(assignment)
hash = hash_from_json(serializer.to_json)
expect(hash.keys).to contain_exactly('role', 'sha', 'user', 'public')
end
it "... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/serializers/basic_user_serializer_spec.rb | spec/serializers/basic_user_serializer_spec.rb | require "rails_helper"
describe BasicUserSerializer do
it "should have the correct keys" do
user = create(:user)
serializer = BasicUserSerializer.new(user)
hash = hash_from_json(serializer.to_json)
expect(hash.keys).to contain_exactly('name')
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/serializers/paper_serializer_spec.rb | spec/serializers/paper_serializer_spec.rb | require "rails_helper"
describe PaperSerializer do
it "should serialize properly" do
user = create(:user)
paper = build(:paper, document_location:"https://example.com", title:"Teh awesomeness", submittor:user)
serializer = PaperSerializer.new(paper)
hash = hash_from_json(serializer.to_json)
ex... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/serializers/full_paper_serializer_spec.rb | spec/serializers/full_paper_serializer_spec.rb | require "rails_helper"
describe FullPaperSerializer do
it "should initialize properly" do
user = create(:user)
paper = create(:paper, document_location:"https://example.com", title:"Teh awesomeness", submittor:user)
serializer = FullPaperSerializer.new(paper)
hash = hash_from_json(serializer.to_jso... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/serializers/annotation_serializer_spec.rb | spec/serializers/annotation_serializer_spec.rb | require "rails_helper"
describe AnnotationSerializer do
it "should initialize properly" do
annotation = create(:annotation)
serializer = AnnotationSerializer.new(annotation)
hash = hash_from_json(serializer.to_json)
expect(hash).to include('id', 'paper_id', 'state', 'parent_id',
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/serializers/preview_paper_serializer_spec.rb | spec/serializers/preview_paper_serializer_spec.rb | require "rails_helper"
describe PreviewPaperSerializer do
it "should initialize properly" do
current_user = create(:user)
user = create(:user)
paper = build(:paper, document_location:"https://example.com", title:"Teh awesomeness", submittor:user)
serializer = PreviewPaperSerializer.new(paper, scop... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/factories/annotation.rb | spec/factories/annotation.rb | FactoryGirl.define do
factory :annotation do
body "You know, this really isn't good enough"
created_at { Time.now }
updated_at { Time.now }
ignore do
user nil
paper nil
parent nil
state nil
end
factory :root, aliases:[:issue]
factory... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/factories/assignment.rb | spec/factories/assignment.rb | FactoryGirl.define do
factory :assignment do
user
paper
role 'collaborator'
created_at { Time.now }
updated_at { Time.now }
trait :collaborator do
role 'collaborator'
end
trait :reviewer do
role 'reviewer'
end
trait :editor do
role 'editor... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/factories/paper.rb | spec/factories/paper.rb | FactoryGirl.define do
factory :paper do
document_location "https://example.com/1234"
state "submitted"
title "My awesome paper"
summary "Summary of my awesome paper"
authors "John Smith, Paul Adams, Ella Fitzgerald"
association :submittor,... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/factories/user.rb | spec/factories/user.rb | FactoryGirl.define do
factory :user do
provider 'orcid'
name 'John Doe'
created_at { Time.now }
admin false
editor false
factory :admin do
name 'John Admin'
admin true
end
factory :editor do
name 'John the Editor'
editor true
end
end
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/controllers/sessions_controller_spec.rb | spec/controllers/sessions_controller_spec.rb | require "rails_helper"
describe SessionsController do
describe "#orcid_name_for" do
it "queries the ORCID API for the username based upon the ORCID ID" do
stub_request(:get, "https://pub.orcid.org/v1.1/0000-0001-7857-2795/orcid-bio").
with(headers: {'Accept'=>'application/orcid+json'}).
t... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/controllers/admin_controller_spec.rb | spec/controllers/admin_controller_spec.rb | require "rails_helper"
describe AdminController do
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/controllers/home_controller_spec.rb | spec/controllers/home_controller_spec.rb | require "rails_helper"
describe HomeController do
# Testing all the things
end
| ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/controllers/papers_controller_spec.rb | spec/controllers/papers_controller_spec.rb | require "rails_helper"
describe PapersController do
describe "GET #badge" do
render_views
it "WITHOUT USER responds successfully with an HTTP 200 status code and response" do
paper = create(:paper, :review_completed)
get :badge, identifier:paper.typed_provider_id, format:'html'
expect(r... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/controllers/feed_controller_spec.rb | spec/controllers/feed_controller_spec.rb | require "rails_helper"
describe FeedController do
describe 'GET #arxiv' do
let(:a_date) { Time.new(2015, 1, 2, 12, 4, 5) }
def create_paper(attributes={})
attributes = {
state: 'published',
provider_type: 'arxiv',
created_at: a_date
}.merge(attributes)... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/controllers/api/v1/users_controller_spec.rb | spec/controllers/api/v1/users_controller_spec.rb | require "rails_helper"
describe Api::V1::UsersController do
describe "GET #show" do
context "when no user is authenticated" do
it "responds successfully with an HTTP 200 status code" do
get :show, :format => :json
expect(response).to have_http_status(:ok)
end
it "should ret... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/controllers/api/v1/papers_controller_spec.rb | spec/controllers/api/v1/papers_controller_spec.rb | require "rails_helper"
describe Api::V1::PapersController do
let(:arxiv_doc) {
{
provider_type: :arxiv,
provider_id: "1311.1653",
version: 2,
authors: "Mar Álvarez-Álvarez, Angeles I. Díaz",
document_location: "https://arxiv.org/pdf/1311.165... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/controllers/api/v1/annotations_controller_spec.rb | spec/controllers/api/v1/annotations_controller_spec.rb | require "rails_helper"
describe Api::V1::AnnotationsController do
describe "POST #create" do
it "should succeed" do
user = authenticate
paper = create(:paper, :under_review, submittor:user)
post :create, paper_identifier:paper.typed_provider_id,
annotation: { body:'An is... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/controllers/api/v1/assignments_controller_spec.rb | spec/controllers/api/v1/assignments_controller_spec.rb | require "rails_helper"
describe Api::V1::AssignmentsController do
describe "GET #index" do
it "should return the list of reviewers" do
paper = create(:paper)
get :index, paper_identifier:paper.typed_provider_id, format: :json
expect(response.content_type).to eq("application/json")
exp... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/models/provider_spec.rb | spec/models/provider_spec.rb | require "rails_helper"
describe Provider do
describe "[]" do
it "should return a provider" do
expect( Provider[:arxiv] ).to be(Provider::ArxivProvider)
end
it "should not be case sensitive" do
expect( Provider[:Arxiv] ).to be(Provider::ArxivProvider)
end
it "should accept a strin... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/models/paper_spec.rb | spec/models/paper_spec.rb | require "rails_helper"
describe Paper do
let(:arxiv_doc) do
{
provider_type: :arxiv,
provider_id: "1311.1653",
version: 2,
authors: "Mar Álvarez-Álvarez, Angeles I. Díaz",
document_location: "https://arxiv.org/pdf/1311.1653v2.pdf",
ti... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/models/annotation_spec.rb | spec/models/annotation_spec.rb | require "rails_helper"
describe Annotation do
describe '#responses' do
it "should return responses" do
paper = create(:paper, :submitted)
first_annotation = create(:annotation, paper:paper)
second_annotation = create(:annotation, paper:paper, parent:first_annotation)
first_annotatio... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/models/user_spec.rb | spec/models/user_spec.rb | require "rails_helper"
describe User do
it "should initialize properly" do
user = create(:user)
assert !user.sha.nil?
expect(user.sha.length).to eq(32)
end
describe "validation" do
describe "email" do
it "should validate nil" do
u = build(:user, email:nil)
expect(u).to ... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/models/assignment_spec.rb | spec/models/assignment_spec.rb | require "rails_helper"
describe Assignment do
let(:arxiv_doc) do
{
provider_type: :arxiv,
provider_id: "1311.1653",
version: 2,
authors: "Mar Álvarez-Álvarez, Angeles I. Díaz",
document_location: "https://arxiv.org/pdf/1311.1653v2.pdf",
... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/models/provider/arxiv_provider_spec.rb | spec/models/provider/arxiv_provider_spec.rb | require_relative 'shared_provider_specs'
require "rails_helper"
describe Provider::ArxivProvider do
def stub_document
stub_request(:get, "http://export.arxiv.org/api/query?id_list=1311.1653v2").to_return(fixture('arxiv/1311.1653v2.xml'))
end
def stub_document_without_version
stub_request(:get, "http://... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
openjournals/theoj | https://github.com/openjournals/theoj/blob/73c6acccc0aefe64b0030c818f405b25b7e7b589/spec/models/provider/shared_provider_specs.rb | spec/models/provider/shared_provider_specs.rb | require "rails_helper"
shared_examples 'All providers' do
def provider; described_class; end
it "should have the required class interface" do
expect(provider).to respond_to(:type).with(0).arguments
expect(provider).to respond_to(:get_attributes).with(1).argument
expect(provider).to respond_to(:full_i... | ruby | MIT | 73c6acccc0aefe64b0030c818f405b25b7e7b589 | 2026-01-04T17:49:58.613320Z | false |
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