Rename benchmark results/results_stem_cell_identification.csv to benchmark results/by_task/results_stem_cell_identification.csv
b2e5f94 verified | Model,Cell population,Cell type,Accuracy,Precision,Recall,F1 Score | |
| Geneformer,Stem.cell,Overall,1,1,1,1 | |
| Geneformer,Stem.cell,Hematopoietic Stem Cells,1,1,1,1 | |
| Geneformer,Stem.cell,Neural Stem Cells,1,1,1,1 | |
| Geneformer,Stem.cell,Mesenchymal Stem Cells,1,1,1,1 | |
| Geneformer,Stem.cell,Embryonic Stem Cells,1,1,1,1 | |
| Geneformer,Non.Stem.cell,Overall,0.522,1,0.522,0.686 | |
| Geneformer,Non.Stem.cell,Astrocytes,1,1,1,1 | |
| Geneformer,Non.Stem.cell,B.cells,1,1,1,1 | |
| Geneformer,Non.Stem.cell,Endothelial cells,1,1,1,1 | |
| Geneformer,Non.Stem.cell,Epithelial cells,1,1,1,1 | |
| Geneformer,Non.Stem.cell,Fibroblasts,1,1,1,1 | |
| Geneformer,Non.Stem.cell,Germ cells,1,1,1,1 | |
| Geneformer,Non.Stem.cell,Glioblasts,0.997,1,0.997,0.998 | |
| Geneformer,Non.Stem.cell,Microglias,0.306,1,0.306,0.469 | |
| Geneformer,Non.Stem.cell,Myeloid cells,0,0,0,0 | |
| Geneformer,Non.Stem.cell,Neuron,0,0,0,0 | |
| Geneformer,Non.Stem.cell,Neuronal.IPCs ,0,0,0,0 | |
| Geneformer,Non.Stem.cell,Oligodendrocytes,0,0,0,0 | |
| Geneformer,Non.Stem.cell,OPCs,0,0,0,0 | |
| Geneformer,Non.Stem.cell,T/NK cells,0,0,0,0 | |
| scFoundation,Stem.cell,Overall,0.979,1,0.979,0.989 | |
| scFoundation,Stem.cell,Hematopoietic Stem Cells,0.998,1,0.998,0.999 | |
| scFoundation,Stem.cell,Neural Stem Cells,0.947,1,0.947,0.973 | |
| scFoundation,Stem.cell,Mesenchymal Stem Cells,0.971,1,0.971,0.985 | |
| scFoundation,Stem.cell,Embryonic Stem Cells,1,1,1,1 | |
| scFoundation,Non.Stem.cell,Overall,0.961,1,0.961,0.98 | |
| scFoundation,Non.Stem.cell,Astrocytes,1,1,1,1 | |
| scFoundation,Non.Stem.cell,B.cells,0.987,1,0.987,0.993 | |
| scFoundation,Non.Stem.cell,Endothelial cells,0.998,1,0.998,0.999 | |
| scFoundation,Non.Stem.cell,Epithelial cells,1,1,1,1 | |
| scFoundation,Non.Stem.cell,Fibroblasts,0.906,1,0.906,0.951 | |
| scFoundation,Non.Stem.cell,Germ cells,1,1,1,1 | |
| scFoundation,Non.Stem.cell,Glioblasts,0.732,1,0.732,0.845 | |
| scFoundation,Non.Stem.cell,Microglias,1,1,1,1 | |
| scFoundation,Non.Stem.cell,Myeloid cells,0.981,1,0.981,0.99 | |
| scFoundation,Non.Stem.cell,Neuron,1,1,1,1 | |
| scFoundation,Non.Stem.cell,Neuronal.IPCs ,0.857,1,0.857,0.923 | |
| scFoundation,Non.Stem.cell,Oligodendrocytes,1,1,1,1 | |
| scFoundation,Non.Stem.cell,OPCs,1,1,1,1 | |
| scFoundation,Non.Stem.cell,T/NK cells,0.996,1,0.996,0.998 | |
| scGPT,Stem.cell,Overall,0.964,1,0.964,0.982 | |
| scGPT,Stem.cell,Hematopoietic Stem Cells,0.936,1,0.936,0.967 | |
| scGPT,Stem.cell,Neural Stem Cells,0.94,1,0.94,0.969 | |
| scGPT,Stem.cell,Mesenchymal Stem Cells,0.982,1,0.982,0.991 | |
| scGPT,Stem.cell,Embryonic Stem Cells,0.997,1,0.997,0.998 | |
| scGPT,Non.Stem.cell,Overall,0.957,1,0.957,0.978 | |
| scGPT,Non.Stem.cell,Astrocytes,1,1,1,1 | |
| scGPT,Non.Stem.cell,B.cells,0.998,1,0.998,0.999 | |
| scGPT,Non.Stem.cell,Endothelial cells,1,1,1,1 | |
| scGPT,Non.Stem.cell,Epithelial cells,1,1,1,1 | |
| scGPT,Non.Stem.cell,Fibroblasts,0.931,1,0.931,0.964 | |
| scGPT,Non.Stem.cell,Germ cells,1,1,1,1 | |
| scGPT,Non.Stem.cell,Glioblasts,0.675,1,0.675,0.806 | |
| scGPT,Non.Stem.cell,Microglias,1,1,1,1 | |
| scGPT,Non.Stem.cell,Myeloid cells,0.992,1,0.992,0.996 | |
| scGPT,Non.Stem.cell,Neuron,1,1,1,1 | |
| scGPT,Non.Stem.cell,Neuronal.IPCs ,0.807,1,0.807,0.893 | |
| scGPT,Non.Stem.cell,Oligodendrocytes,0.998,1,0.998,0.999 | |
| scGPT,Non.Stem.cell,OPCs,1,1,1,1 | |
| scGPT,Non.Stem.cell,T/NK cells,0.996,1,0.996,0.998 | |
| UCE,Stem.cell,Overall,0.979,1,0.979,0.989 | |
| UCE,Stem.cell,Hematopoietic Stem Cells,0.999,1,0.999,0.999 | |
| UCE,Stem.cell,Neural Stem Cells,0.934,1,0.934,0.966 | |
| UCE,Stem.cell,Mesenchymal Stem Cells,0.984,1,0.984,0.992 | |
| UCE,Stem.cell,Embryonic Stem Cells,1,1,1,1 | |
| UCE,Non.Stem.cell,Overall,0.963,1,0.963,0.981 | |
| UCE,Non.Stem.cell,Astrocytes,1,1,1,1 | |
| UCE,Non.Stem.cell,B.cells,0.999,1,0.999,0.999 | |
| UCE,Non.Stem.cell,Endothelial cells,0.999,1,0.999,0.999 | |
| UCE,Non.Stem.cell,Epithelial cells,1,1,1,1 | |
| UCE,Non.Stem.cell,Fibroblasts,0.943,1,0.943,0.971 | |
| UCE,Non.Stem.cell,Germ cells,1,1,1,1 | |
| UCE,Non.Stem.cell,Glioblasts,0.743,1,0.743,0.853 | |
| UCE,Non.Stem.cell,Microglias,1,1,1,1 | |
| UCE,Non.Stem.cell,Myeloid cells,0.989,1,0.989,0.994 | |
| UCE,Non.Stem.cell,Neuron,1,1,1,1 | |
| UCE,Non.Stem.cell,Neuronal.IPCs ,0.816,1,0.816,0.899 | |
| UCE,Non.Stem.cell,Oligodendrocytes,1,1,1,1 | |
| UCE,Non.Stem.cell,OPCs,1,1,1,1 | |
| UCE,Non.Stem.cell,T/NK cells,0.999,1,0.999,0.999 | |
| scLong,Stem.cell,Overall,0.904,1,0.904,0.95 | |
| scLong,Stem.cell,Hematopoietic Stem Cells,0.989,1,0.989,0.994 | |
| scLong,Stem.cell,Neural Stem Cells,0.8,1,0.8,0.889 | |
| scLong,Stem.cell,Mesenchymal Stem Cells,0.83,1,0.83,0.907 | |
| scLong,Stem.cell,Embryonic Stem Cells,0.997,1,0.997,0.998 | |
| scLong,Non.Stem.cell,Overall,0.704,1,0.704,0.827 | |
| scLong,Non.Stem.cell,Astrocytes,0.994,1,0.994,0.997 | |
| scLong,Non.Stem.cell,B.cells,0.74,1,0.74,0.851 | |
| scLong,Non.Stem.cell,Endothelial cells,0.627,1,0.627,0.771 | |
| scLong,Non.Stem.cell,Epithelial cells,0.5,1,0.5,0.667 | |
| scLong,Non.Stem.cell,Fibroblasts,0.281,1,0.281,0.439 | |
| scLong,Non.Stem.cell,Germ cells,0.929,1,0.929,0.963 | |
| scLong,Non.Stem.cell,Glioblasts,0.425,1,0.425,0.596 | |
| scLong,Non.Stem.cell,Microglias,0.993,1,0.993,0.996 | |
| scLong,Non.Stem.cell,Myeloid cells,0.613,1,0.613,0.76 | |
| scLong,Non.Stem.cell,Neuron,1,1,1,1 | |
| scLong,Non.Stem.cell,Neuronal.IPCs ,0.263,1,0.263,0.416 | |
| scLong,Non.Stem.cell,Oligodendrocytes,0.995,1,0.995,0.997 | |
| scLong,Non.Stem.cell,OPCs,0.997,1,0.997,0.998 | |
| scLong,Non.Stem.cell,T/NK cells,0.505,1,0.505,0.671 | |