ascl_id stringclasses 752
values | repo_url stringclasses 737
values | file_path stringlengths 4 194 | content large_stringlengths 1 1M | language stringclasses 29
values | license_type stringclasses 24
values | size int64 1 1M |
|---|---|---|---|---|---|---|
[ascl:2010.015] | https://github.com/thdauser/relxill | src/ModelDefinition.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 5,723 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/relutility.c | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C | Unknown | 20,108 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/reltable.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 2,163 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relreturn_Datastruct.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 1,759 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/writeOutfiles.c | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C | Unknown | 2,853 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Rellp.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 2,264 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relprofile.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 34,148 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Xillspec.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 3,570 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/relutility.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 6,438 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relxill.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 18,067 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relprofile.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 1,521 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/JedSad.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 8,342 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relreturn_Datastruct.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 3,471 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relreturn_BlackBody.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 2,890 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/CMakeLists.txt | ### SOURCE FILES: add all model files here ###
set(SOURCE_FILES
common.h
donthcomp.c
Relbase.cpp Relbase.h
Relcache.cpp Relcache.h
Rellp.cpp Rellp.h
reltable.c reltable.h
relutility.c relutility.h
xilltable.c xilltable.h
Relphysics.cpp Relphysics.h... | Text | Unknown | 3,735 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relreturn_Table.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 2,639 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/reltable.c | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C | Unknown | 16,947 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relcache.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 6,640 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relbase.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 21,279 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/common.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 10,067 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relxill.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 3,809 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relphysics.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 3,004 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relreturn_Table.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 17,042 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/donthcomp.c | /* donthcomp.f -- translated by f2c (version 20100827).
You must link the resulting object file with libf2c:
on Microsoft Windows system, link with libf2c.lib;
on Linux or Unix systems, link with .../path/to/libf2c.a -lm
or, if you install libf2c.a in a standard place, with -lf2c -lm
-- in that order, at the end... | C | Unknown | 23,907 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Rellp.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 22,823 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relreturn_Corona.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 1,657 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Rellp_Extended.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 3,932 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/PrimarySource.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 12,618 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/LocalModel.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 5,711 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/xilltable.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 2,146 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relbase.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 4,999 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/JedSad.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 4,323 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/writeOutfiles.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 1,264 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/IonGradient.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 4,084 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/create_wrapper_xspec.py | #! /usr/bin/env python3
import re
import sys
# Tool to Automatically Construct the Cpp-Model-Wrapper from the Xspec lmodel.dat file
# - models are separated by an empty line
# - for <model_name> the C-function has to be called c_<local_model_prefix><model_name>
local_model_prefix = "lmod"
header = """/*
*** AUTOM... | Python | Unknown | 8,185 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relreturn_BlackBody.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 32,096 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/IonGradient.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 18,089 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/LocalModel.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 4,597 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Rellp_Extended.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 50,245 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/xilltable.c | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C | Unknown | 39,563 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relphysics.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 17,053 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relreturn_Corona.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 11,404 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Xillspec.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 23,222 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/ModelDatabase.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 6,362 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/test_sta.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 1,599 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/PrimarySource.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 6,594 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/ModelInfo.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 2,463 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/ModelDefinition.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 19,181 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/Relcache.cpp | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C++ | Unknown | 13,376 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/XspecSpectrum.h | /*
This file is part of the RELXILL model code.
RELXILL is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
RELXILL is distributed in the hope... | C/C++ Header | Unknown | 6,430 |
[ascl:2010.015] | https://github.com/thdauser/relxill | src/modelfiles/compile_relxill.sh | #!/bin/bash
ln -sf lmodel_relxill.dat lmodel.dat
sed -i "s,#define RELXILL_TABLE_PATH.*,#define RELXILL_TABLE_PATH "'"'`pwd`'"'"," common.h
# "For Mac OSX systems, you might have to use this"
# sed -i.ori "s,#define RELXILL_TABLE_PATH.*,#define RELXILL_TABLE_PATH "'"'`pwd`'"'"," common.h
echo "initpackage relxill ... | Shell | Unknown | 450 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | wigner3j.py | import numpy as np
import pywigxjpf as wig
import multiprocessing as mp
def compute_3j_symbol_one_ell(l1, ell_sum_max):
'''
PARAMETERS
l1: int, value of first ell for Wigner 3j symbol
ell_sum_max: int, maximum l2,l3 for which to calculate Wigner 3j symbols
RETURNS
wig3j_one_ell: 2D numpy array... | Python | null | 1,946 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | threshold_moto.yaml | nsims: 1 #number of simulations to run
ellmax: 50 #ellmax for power spectra
ell_sum_max: 50 #maximum ell to loop over
remove_high_ell_power: 1 #Set to nonzero value to remove power above ellmax in alm and wlm
nside: 128 #nside of maps, used in bi[tri]spectrum calculation
nside_for_masking: 64 #nside for finding regions... | YAML | null | 1,191 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | input.py | import yaml
import numpy as np
##########################
# simple function for opening the file
def read_dict_from_yaml(yaml_file):
assert(yaml_file != None)
with open(yaml_file) as f:
config = yaml.safe_load(f)
return config
##########################
##########################
"""
class that co... | Python | null | 3,188 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | plot_remastered.py | import matplotlib.pyplot as plt
import string
import healpy as hp
import numpy as np
def plot_remastered(inp, remastered_data, base_dir, start=2, logx=False, logy=False):
'''
PARAMETERS
inp: Info() object, contains information about input parameters
remastered_data: list, contains [aa_ww_term, aw_... | Python | null | 2,418 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | generate_mask.py | import numpy as np
import healpy as hp
import pymaster as nmt
def mask_above_cut(inp, cut_high, cut_low, map_, nside, nside_for_masking):
'''
PARAMETERS
inp: Info object, contains input specifications
cut_high: float, value of map pixels above which to mask if inp.cut_high is True
cut_low: float, v... | Python | null | 1,761 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | test_remastered.py | import numpy as np
import pickle
import subprocess
import os
from plot_remastered import *
def compare_master(inp, master_lhs, wlm_00, alm_00, Cl_aa, Cl_ww, Cl_aw, bispectrum_aaw, bispectrum_waw, Rho, env, base_dir=None):
'''
PARAMETERS
inp: Info() object, contains information about input parameters
ma... | Python | null | 3,350 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | main.py | import os
import subprocess
import numpy as np
import healpy as hp
import time
import pickle
import argparse
from input import Info
from bispectrum import *
from trispectrum import *
from test_remastered import *
from wigner3j import *
from plot_mask import *
def main():
start_time = time.time()
# main input... | Python | null | 3,470 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | trispectrum.py | #Code adapted from PolyBin O. H. E. Philcox (2022), in prep.
import healpy as hp
import numpy as np
def Tl_numerator(inp, lmax, lmax_sum, data1, data2, data3, data4,
Cl12_th, Cl13_th, Cl14_th, Cl23_th, Cl24_th, Cl34_th,
lmin=0, verb=False,
equal12=False,equal13=Fals... | Python | null | 7,701 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | bispectrum.py | #Code adapted from PolyBin O. H. E. Philcox (2022), in prep.
import healpy as hp
import numpy as np
def Bl_norm(inp):
'''
Computes bispectrum normalization
PARAMETER
inp: Info() object, contains information about input parameters
RETURNS
norm: 3D numpy array, indexed as norm[l1,l2,l3]
''... | Python | null | 3,521 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | ensemble_threshold.py | import os
import subprocess
import numpy as np
import healpy as hp
import multiprocessing as mp
import time
import pickle
import argparse
from input import Info
from generate_mask import *
from bispectrum import *
from trispectrum import *
from test_remastered import *
from plot_mask import *
from wigner3j import *
... | Python | null | 7,302 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | moto.yaml | ellmax: 5 #ellmax for power spectra
ell_sum_max: 10 #maximum ell to loop over
nside: 16 #nside of maps, used in bi[tri]spectrum calculation
map_file: '/moto/hill/users/kms2320/websky_maps/cmb_lensed_nside1024_K.fits' #File for component map, assumed to be in Kelvin
mask_file: '/moto/hill/users/kms2320/websky_maps/cmb_... | YAML | null | 797 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | plot_mask.py | import matplotlib.pyplot as plt
import string
import healpy as hp
import numpy as np
def plot_mask(inp, mask_data, base_dir):
'''
PARAMETERS
inp: Info() object, contains information about input parameters
mask_data: list, contains [map, mask, masked map, and correlation coefficient]
base_dir: str,... | Python | null | 1,680 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | README.md | # reMASTERed
Calculates contributions to pseudo-Cl for maps with correlated masks. In particular, it extends the **M**onte Carlo **A**podised **S**pherical **T**ransform **E**stimato**R** (MASTER) approach (https://arxiv.org/abs/astro-ph/0105302) to situations where the map and mask exhibit correlations, as is the c... | Markdown | null | 1,839 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | additional_tests/consistency_cmb_offsetmask.py | # import sys
# sys.path.insert(0, "./../" )
# sys.path.insert(0, "./" )
# import os
# import subprocess
# import numpy as np
# import healpy as hp
# import multiprocessing as mp
# import time
# from input import Info
# from generate_mask import *
# from bispectrum import *
# from test_remastered import *
# from wigner3... | Python | null | 9,920 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | additional_tests/plot_consistency.py | import matplotlib.pyplot as plt
import string
import healpy as hp
import numpy as np
def plot_consistency(inp, data, base_dir, start=0, logx=True, logy=False):
'''
PARAMETERS
inp: Info() object, contains information about input parameters
data: list, contains [lhs_atildea, w_aa_term_atildea, a_aw_... | Python | null | 3,109 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | additional_tests/consistency_checks.py | import sys
sys.path.insert(0, "./../" )
sys.path.insert(0, "./" )
import os
import subprocess
import numpy as np
import healpy as hp
import multiprocessing as mp
import time
import pickle
from input import Info
from generate_mask import *
from bispectrum import *
from test_remastered import *
from plot_consistency impo... | Python | null | 6,648 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | additional_tests/consistency_tsz_offsetmask.py | import sys
sys.path.insert(0, "./../" )
sys.path.insert(0, "./" )
import os
import subprocess
import numpy as np
import healpy as hp
import multiprocessing as mp
import time
import pickle
from input import Info
from generate_mask import *
from bispectrum import *
from trispectrum import *
from test_remastered import *
... | Python | null | 6,144 |
[ascl:2307.049] | https://github.com/kmsurrao/reMASTERed | additional_tests/tsz_maskIR.py | import sys
sys.path.append("..")
import os
import subprocess
import numpy as np
import healpy as hp
import multiprocessing as mp
import h5py
import pymaster as nmt
import pickle
import time
from input import Info
from generate_mask import *
from bispectrum import *
from trispectrum import *
from test_remastered import ... | Python | null | 8,684 |
[ascl:1904.008] | https://github.com/pcubillos/repack | requirements.txt | numpy>=2.0
scipy>=1.13.0
| Text | MIT | 25 |
[ascl:1904.008] | https://github.com/pcubillos/repack | setup.py | # Copyright (c) 2017-2024 Patricio Cubillos and contributors.
# repack is open-source software under the MIT license (see LICENSE).
import os
import re
from setuptools import setup, Extension
from numpy import get_include
srcdir = './repack/utils/' # C-code source folder
files = os.listdir(srcdir)
files = list(fi... | Python | MIT | 809 |
[ascl:1904.008] | https://github.com/pcubillos/repack | pyproject.toml | [build-system]
requires = [
'setuptools>=40.8.0',
'numpy>=2.0.0',
]
build-backend = "setuptools.build_meta"
[project]
name = "lbl-repack"
description = "A line-transition data compression package"
readme = "README.md"
license = { file = "LICENSE" }
#https://packaging.python.org/en/latest/guides/single-sourcin... | TOML | MIT | 979 |
[ascl:1904.008] | https://github.com/pcubillos/repack | .travis.yml | language: python
matrix:
include:
- python: 3.6
- python: 3.7
sudo: required
dist: xenial
install:
- pip install -r requirements.txt
- pip install -e .
- wget https://hitran.org/hitemp/data/HITEMP-2010/CO2_line_list/02_03750-04000_HITEMP2010.zip
- wget https://hitran.org/hitemp/data/HITEMP-2010/... | YAML | MIT | 1,394 |
[ascl:1904.008] | https://github.com/pcubillos/repack | README.md | # repack
Repack and Compress Line-transition Data for Radiative-tranfer Calculations
[](https://pypi.org/project/lbl-repack)
[](https://anaconda.org/conda-forge/lbl-repack)
[:
outfile = HCN_exomol_harris-larner_0.3-33um_100-3000K_sthresh_0.01
# Wavenumber sampling (in cm-... | Config | MIT | 589 |
[ascl:1904.008] | https://github.com/pcubillos/repack | demo/wget_exomol_hcn.txt | http://exomol.com/db/HCN/1H-12C-14N/Harris/1H-12C-14N__Harris.states.bz2
http://exomol.com/db/HCN/1H-12C-14N/Harris/1H-12C-14N__Harris.trans.bz2
http://exomol.com/db/HCN/1H-12C-14N/Harris/1H-12C-14N__Harris.pf
http://exomol.com/db/HCN/1H-13C-14N/Larner/1H-13C-14N__Larner.states.bz2
http://exomol.com/db/HCN/1H-13C-14N/L... | Text | MIT | 420 |
[ascl:1904.008] | https://github.com/pcubillos/repack | demo/repack_TiO.cfg | [REPACK]
# Line-transition files:
lblfiles = tioschwenke.bin
# Database type [exomol, hitran, or kurucz]:
dbtype = kurucz
# Partition function file:
pffile = PF_Schwenke_TiO.dat
# Output file name (without file extension):
outfile = TiO_kurucz_0.5-10um_1000-3000K_sthresh_0.01
# Wavenumber sampling (all in cm-1):
w... | Config | MIT | 585 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/test_utils.py | import os
import pytest
import numpy as np
import repack.utils as u
ROOT = os.path.realpath(os.path.dirname(__file__) + '/..') + '/'
os.chdir(ROOT+'tests')
@pytest.mark.parametrize('zip', ['', '.bz2'])
def test_parse_file_exomol(zip):
tfile = '1H2-16O__POKAZATEL__00400-00500.trans' + zip
info = u.parse_fil... | Python | MIT | 3,339 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/exomol_repack_two_isotopes.cfg | [REPACK]
# Line-transition files:
lblfiles =
data/14N-1H3__BYTe__00100-00200.trans.bz2
data/15N-1H3__BYTe-15__00100-00200.trans.bz2
# Database type (exomol or hitran):
dbtype = exomol
# Output file name (without file extension):
outfile = NH3_exomol_050-100um_500-700K
# Wavenumber sampling (in cm-1):
wnmin ... | Config | MIT | 536 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/exomol_repack_missing1.cfg | [REPACK]
# Line-transition files:
lblfiles =
data/14N-1H3__BYTe__00100-00200.trans.bz2
data/14N-1H3__MiSSinG__00200-00300.trans.bz2
# Database type (exomol or hitran):
dbtype = exomol
# Output file name (without file extension):
outfile = NH3_exomol_050-100um_500-700K
# Wavenumber sampling (in cm-1):
wnmin ... | Config | MIT | 536 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/exomol_repack_single_chunks.cfg | [REPACK]
# Line-transition files:
lblfiles = data/14N-1H3__BYTe__00100-00200.trans.bz2
# Database type (exomol or hitran):
dbtype = exomol
# Output file name (without file extension):
outfile = NH3_exomol_050-100um_500-700K
# Wavenumber sampling (in cm-1):
wnmin = 100.0
wnmax = 200.0
dwn = 1.0
# Temperature sa... | Config | MIT | 482 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/exomol_sort.cfg | [REPACK]
# Line-transition files:
lblfiles = data/1H2-16O__POKAZATEL__34800-34900.trans.bz2
# Database type (exomol or hitran):
dbtype = exomol
# Output file name (without file extension):
outfile = H2O_exomol_0.26um_500-1000K
# Wavenumber sampling (in cm-1):
wnmin = 34800.0
wnmax = 34900.0
dwn = 0.0
# Tempe... | Config | MIT | 491 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/exomol_repack_missing2.cfg | [REPACK]
# Line-transition files:
lblfiles =
data/14N-1H3__BYTe__00100-00200.trans.bz2
data/14N-1H3__MiSSinG__00200-00300.trans.bz2
data/14N-1H3__MiSSinG__00300-00400.trans.bz2
data/14N-1H3__MiSSinG__00400-00500.trans.bz2
# Database type (exomol or hitran):
dbtype = exomol
# Output file name (without... | Config | MIT | 634 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/exomol_repack_two_files.cfg | [REPACK]
# Line-transition files:
lblfiles =
data/14N-1H3__BYTe__00100-00200.trans.bz2
data/14N-1H3__BYTe__00200-00300.trans.bz2
# Database type (exomol or hitran):
dbtype = exomol
# Output file name (without file extension):
outfile = NH3_exomol_033-100um_500-700K
# Wavenumber sampling (in cm-1):
wnmin = 1... | Config | MIT | 533 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/exomol_repack_single_unzip.cfg | [REPACK]
# Line-transition files:
lblfiles = data/14N-1H3__BYTe__00100-00200.trans
# Database type (exomol or hitran):
dbtype = exomol
# Output file name (without file extension):
outfile = NH3_exomol_050-100um_500-700K
# Wavenumber sampling (in cm-1):
wnmin = 100.0
wnmax = 200.0
dwn = 1.0
# Temperature sampli... | Config | MIT | 479 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/exomol_repack_single.cfg | [REPACK]
# Line-transition files:
lblfiles = data/14N-1H3__BYTe__00100-00200.trans.bz2
# Database type (exomol or hitran):
dbtype = exomol
# Output file name (without file extension):
outfile = NH3_exomol_050-100um_500-700K
# Wavenumber sampling (in cm-1):
wnmin = 100.0
wnmax = 200.0
dwn = 1.0
# Temperature sa... | Config | MIT | 483 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/hitemp_repack_single_zip.cfg | [REPACK]
# Line-transition files:
lblfiles = data/02_03750-04000_HITEMP2010.zip
# Database type:
dbtype = hitran
# Output file name (without file extension):
outfile = CO2_hitran_2.5-2.6um_500-700K
# Partition function file:
pffile = data/PF_tips_CO2.dat
# Wavenumber sampling (all in cm-1):
wnmin = 3750.0
wnmax = ... | Config | MIT | 551 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/test_sorting.py | import os
import bz2
import shutil
import subprocess
import numpy as np
import repack
ROOT = os.path.realpath(os.path.dirname(__file__) + '/..') + '/'
os.chdir(ROOT+'tests')
def test_exomol_sort():
states_file = 'data/1H2-16O__POKAZATEL.states.bz2'
lbl_file = 'data/1H2-16O__POKAZATEL__34800-34900.trans.bz2'... | Python | MIT | 1,557 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/hitemp_repack_single_chunks.cfg | [REPACK]
# Line-transition files:
lblfiles = data/02_03750-04000_HITEMP2010.zip
# Database type:
dbtype = hitran
# Output file name (without file extension):
outfile = CO2_hitran_2.5-2.6um_500-700K
# Partition function file:
pffile = data/PF_tips_CO2.dat
# Wavenumber sampling (all in cm-1):
wnmin = 3750.0
wnmax = ... | Config | MIT | 550 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/test_exomol.py | import os
import subprocess
import pytest
ROOT = os.path.realpath(os.path.dirname(__file__) + '/..') + '/'
os.chdir(ROOT+'tests')
@pytest.mark.parametrize('missfile',
['exomol_repack_missing1.cfg',
'exomol_repack_missing2.cfg'])
def test_missing(capfd, missfile):
subprocess.call(['repack', missfile])
... | Python | MIT | 6,710 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/hitemp_repack_single_unzip.cfg | [REPACK]
# Line-transition files:
lblfiles = data/02_3750-4000_HITEMP2010.par
# Database type:
dbtype = hitran
# Output file name (without file extension):
outfile = CO2_hitran_2.5-2.6um_500-700K
# Partition function file:
pffile = data/PF_tips_CO2.dat
# Wavenumber sampling (all in cm-1):
wnmin = 3750.0
wnmax = 40... | Config | MIT | 549 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/test_hitemp.py | import os
import subprocess
ROOT = os.path.realpath(os.path.dirname(__file__) + '/..') + '/'
os.chdir(ROOT+'tests')
def test_hitemp_single_zip(capfd):
subprocess.call('repack hitemp_repack_single_zip.cfg'.split())
capfd = capfd.readouterr()
assert """Reading: 'data/02_03750-04000_HITEMP2010.zip'.
Flagg... | Python | MIT | 3,976 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/exomol_repack_two_two.cfg | [REPACK]
# Line-transition files:
lblfiles =
data/14N-1H3__BYTe__00100-00200.trans.bz2
data/14N-1H3__BYTe__00200-00300.trans.bz2
data/15N-1H3__BYTe-15__00100-00200.trans.bz2
data/15N-1H3__BYTe-15__00200-00300.trans.bz2
# Database type:
dbtype = exomol
# Output file name (without file extension):
outf... | Config | MIT | 612 |
[ascl:1904.008] | https://github.com/pcubillos/repack | tests/hitemp_repack_two.cfg | [REPACK]
# Line-transition files:
lblfiles =
data/02_03750-04000_HITEMP2010.zip
data/02_04000-04500_HITEMP2010.zip
# Database type:
dbtype = hitran
# Output file name (without file extension):
outfile = CO2_hitran_2.2-2.6um_500-700K
# Partition function file:
pffile = data/PF_tips_CO2.dat
# Wavenumber samp... | Config | MIT | 594 |
[ascl:1904.008] | https://github.com/pcubillos/repack | repack/pack.py | # Copyright (c) 2017-2024 Patricio Cubillos and contributors.
# repack is open-source software under the MIT license (see LICENSE).
__all__ = [
'parser',
'repack',
'sort',
]
import os
import bz2
import struct
import subprocess
import configparser
import multiprocessing as mp
import numpy as np
import sci... | Python | MIT | 19,592 |
[ascl:1904.008] | https://github.com/pcubillos/repack | repack/version.py | # Copyright (c) 2017-2024 Patricio Cubillos and contributors.
# repack is open-source software under the MIT license (see LICENSE).
# repack version:
repack_VER = 1 # Major version
repack_MIN = 4 # Minor version
repack_REV = 5 # Revision
__version__ = f'{repack_VER}.{repack_MIN}.{repack_REV}'
| Python | MIT | 299 |
[ascl:1904.008] | https://github.com/pcubillos/repack | repack/__init__.py | # Copyright (c) 2017-2024 Patricio Cubillos and contributors.
# repack is open-source software under the MIT license (see LICENSE).
__all__ = [
'constants',
'utils',
]
from . import constants
from . import utils
from .pack import *
from .version import __version__
__all__ += pack.__all__
# Clean up top-le... | Python | MIT | 612 |
[ascl:1904.008] | https://github.com/pcubillos/repack | repack/__main__.py | #! /usr/bin/env python
# Copyright (c) 2017-2021 Patricio Cubillos and contributors.
# repack is open-source software under the MIT license (see LICENSE).
import sys
import time
import warnings
from datetime import date
import repack
banner = ':'*70
error_message = """\
Error: Wrong usage. For repacking:
... | Python | MIT | 1,334 |
[ascl:1904.008] | https://github.com/pcubillos/repack | repack/constants/__init__.py | # Copyright (c) 2017-2021 Patricio Cubillos and contributors.
# repack is open-source software under the MIT license (see LICENSE).
from .constants import *
from .constants import __all__
# Clean up top-level namespace--delete everything that isn't in __all__
# or is a magic attribute, and that isn't a submodule of ... | Python | MIT | 500 |
[ascl:1904.008] | https://github.com/pcubillos/repack | repack/constants/constants.py | # Copyright (c) 2017-2021 Patricio Cubillos and contributors.
# repack is open-source software under the MIT license (see LICENSE).
__all__ = [
"kB",
"amu",
"e",
"me",
"N0",
"nano",
"C1",
"C2",
"C3",
"ROOT",
]
import os
import scipy.constants as sc
# Boltzmann constant i... | Python | MIT | 1,021 |
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