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inchikey
stringlengths
27
27
name
stringlengths
8
41
smiles
stringlengths
1
323
source
stringclasses
3 values
S_charge
float64
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S_hydrophobic
float64
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S_rigidity
float64
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1
S_desolvation
float64
0
0.95
S_packing
float64
0
1
S_shape
float64
0.11
1
S_conformer_diversity
float64
0
1
S_boltzmann_concentration
float64
0.3
1
S_bad
float64
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AACRTFVHFCAWQM-UHFFFAOYSA-N
AACRTFVHFCAWQM
CN(C)CCCNc1oc(-c2ccccc2)nc1C#N
geom_drugs
0
0.820957
0.301194
0.436716
0.085561
0.519917
0.320609
0.87168
0.370645
AACRWZVDRSTLKY-UHFFFAOYSA-N
AACRWZVDRSTLKY
O=[N+]([O-])c1ccccc1S(=O)(=O)N1CCCCC1
geom_drugs
0
0.71073
0.548812
0.26386
0.35293
0.935342
0.320093
0.994489
0.346456
AACUKVXTFOXDGE-UHFFFAOYSA-N
AACUKVXTFOXDGE
CCOC(=O)C(CC)Sc1ncnc2c1nnn2-c1ccc(F)cc1
geom_drugs
0
0.809809
0.301194
0.242412
0.004616
0.497492
0.217657
0.88112
0.435553
AACUVVMEFJMWSX-VIZOYTHASA-N
AACUVVMEFJMWSX
COc1ccc(CO/N=C/c2c(C)[nH]c(=O)[nH]c2=O)cc1
geom_drugs
0
0.738832
0.367879
0.138596
0.109572
0.38516
0.404658
0.738992
0.50609
AACVCICCSUEVIJ-UHFFFAOYSA-N
AACVCICCSUEVIJ
O=C1CC(c2ccncc2)c2cc3c(cc2N1)OCO3
geom_drugs
0
0.800843
0.818731
0.494375
0.336487
0.843485
0.50116
0.472497
0.099654
AACVSBAZVYNSFH-UHFFFAOYSA-O
AACVSBAZVYNSFH
CC(=O)N1CC[NH+](CC(=O)Nc2ccc(C)c(F)c2)CC1
geom_drugs
0.175
0.738683
0.548812
0.576275
0.039175
0.553318
0.304682
0.999511
0.248883
AACYBGHKLHTHHO-UHFFFAOYSA-N
AACYBGHKLHTHHO
CCCCc1cc(=O)oc2cc(OCC(=O)NCC3CCC(C(=O)O)CC3)ccc12
geom_drugs
0
0.841501
0.165299
0.091788
0.000001
0.3256
0.177411
0.999673
0.598792
AACZKKTXNWTCOF-UHFFFAOYSA-N
AACZKKTXNWTCOF
CCC(=NO)C(C)=NO
qm9
0
0.528746
0.67032
0.43561
0.634713
0.899064
0.446952
0.522265
0.155399
AADBEZALNPVNKC-UHFFFAOYSA-N
AADBEZALNPVNKC
CC(C)c1ccc2c(c1)C(=O)NC(C)(C)C2
geom_drugs
0
0.855128
0.818731
0.82419
0.434224
0.828844
0.380375
0.306061
0.141991
AADBJECSUIDPGN-UHFFFAOYSA-N
AADBJECSUIDPGN
CC(C)(C)n1nc2c(c1NC(=O)Cc1ccc(Cl)cc1)CS(=O)(=O)C2
geom_drugs
0
0.82296
0.548812
0.258649
0.000932
0.603079
0.249417
1
0.295196
AADBUWLLWUXWFS-UHFFFAOYSA-N
AADBUWLLWUXWFS
Nc1coc(=O)cc1N
qm9
0
0.436819
1
0.247405
0.368686
0.862767
0.819792
0.599846
0.182344
AADCDMQTJNYOSS-LBPRGKRZSA-O
AADCDMQTJNYOSS
CCc1cc(Cl)c(OC)c(C(=O)NC[C@@H]2CCC[NH+]2CC)c1O
geom_drugs
0.175
0.791013
0.301194
0.46257
0.001565
0.727087
0.209193
1
0.284162
AADCKMNBUAAAFK-UHFFFAOYSA-N
AADCKMNBUAAAFK
O=c1c2ccccc2ncn1-c1ccc(Cl)c(Cl)c1
geom_drugs
0
0.870609
0.818731
0.77825
0.32716
0.590207
0.608716
0.329743
0.198618
AADCSMJZVWEHJE-UHFFFAOYSA-N
AADCSMJZVWEHJE
COc1ccc(S(=O)(=O)Nc2c(C)n(C)n(-c3ccccc3)c2=O)cc1Br
geom_drugs
0
0.821588
0.367879
0.246661
0.000158
0.806167
0
0.650554
0.274077
AADDNCUWOUKCJB-UHFFFAOYSA-N
AADDNCUWOUKCJB
O=C(CN1CCN(Cc2ccc3c(c2)OCO3)CC1)N1CCc2[nH]c3ccccc3c2C1
geom_drugs
0
0.832533
0.449329
0.487003
0
0.275883
0.144539
0.998942
0.309376
AADHGWGGROCAHV-UHFFFAOYSA-N
AADHGWGGROCAHV
CCCn1c(N2CCN(CC(=O)c3c(C)n(C)c4ccccc34)CC2)nc2c1c(=O)[nH]c(=O)n2C
geom_drugs
0
0.789735
0.301194
0.113247
0
0.335569
0.107763
1
0.520783
AADHNFIRCRYOGZ-UHFFFAOYSA-N
AADHNFIRCRYOGZ
COc1ccc(C2=NN(c3nc(C(=O)O)cs3)C(O)(C(F)(F)F)C2)c(OC)c1
geom_drugs
0
0.792435
0.367879
0.097616
0.001145
0.632757
0.24949
0.950777
0.432872
AADMKFJZHGZUOL-UHFFFAOYSA-N
AADMKFJZHGZUOL
Cc1nc2nc(C)c(CCC(=O)NCc3ccc4c(c3)OCO4)c(C)n2n1
geom_drugs
0
0.790964
0.367879
0.177701
0.000589
0.880838
0.180186
0.692215
0.315395
AADNNAAUXYCHFO-UHFFFAOYSA-O
AADNNAAUXYCHFO
COc1cccc(CN2CC[NH+](S(=O)(=O)c3ccc(NC(C)=O)cc3)CC2)c1OC
geom_drugs
0.175
0.757057
0.246597
0.187095
0.000001
0.324667
0.078218
1
0.5237
AADOHPJLNNJGGG-UHFFFAOYSA-N
AADOHPJLNNJGGG
Nc1nc(NCC2CCCO2)nc(Nc2cccc(Cl)c2)c1[N+](=O)[O-]
geom_drugs
0
0.78748
0.301194
0.031938
0.004538
0.595074
0.29041
0.999983
0.664157
AADORYZVGJDNSZ-UHFFFAOYSA-N
AADORYZVGJDNSZ
COc1ccc(C2=CC(c3ccc(OC)c(OC)c3)n3nnnc3N2)c(OC)c1
geom_drugs
0
0.811574
0.301194
0.164173
0.000091
0.58695
0.252834
0.800278
0.411135
AADPSPMQYLGCHH-UHFFFAOYSA-N
AADPSPMQYLGCHH
O=C(CSc1nnc(-c2cccs2)n1-c1cccc(Cl)c1)c1cccc2c1OCCO2
geom_drugs
0
0.875686
0.301194
0.422627
0.000003
0.606398
0.079083
0.99969
0.293317
AADRLICLFOKYNJ-UKTHLTGXSA-N
AADRLICLFOKYNJ
CC1=Nc2ccccc2/C1=C/c1nc(-c2ccc(C)s2)oc1O
geom_drugs
0
0.874494
0.67032
0.517243
0.031088
0.521452
0.441319
0.998973
0.221161
AADSRSCSJBIQMT-UHFFFAOYSA-N
AADSRSCSJBIQMT
O=c1cc(N2CCc3ccccc32)[nH]c(=O)n1-c1ccccc1
geom_drugs
0
0.815852
0.67032
0.523732
0.051224
0.571414
0.514433
0.723986
0.222398
AADUNGUUVWMGSR-UHFFFAOYSA-N
AADUNGUUVWMGSR
OCCc1ccon1
qm9
0
0.518286
0.67032
0.665299
0.31559
0.824547
0.570181
0.433416
0.179274
AADUQJRYRNECME-UHFFFAOYSA-N
AADUQJRYRNECME
CCc1cc(=O)oc2cc(C)cc(OC(C)C(=O)NCCCN3CCOCC3)c12
geom_drugs
0
0.815764
0.201897
0.259129
0.000002
0.473849
0.045399
0.999984
0.458121
AADVNQLYBAPSEP-UHFFFAOYSA-N
AADVNQLYBAPSEP
COc1ccc(-c2nc(NC(=O)CSc3nnc(C)s3)ns2)cc1
geom_drugs
0
0.783235
0.301194
0.183247
0.0056
0.492603
0.205078
0.999928
0.449649
AADVYOLRSYCRNH-UHFFFAOYSA-N
AADVYOLRSYCRNH
N#CCSc1nnc(Cc2cccs2)n1C1CCCCC1
geom_drugs
0
0.849274
0.367879
0.56832
0.021304
0.864075
0.285201
0.999864
0.192955
AADVZSXPNRLYLV-UHFFFAOYSA-N
AADVZSXPNRLYLV
O=C(O)C1C(O)CCC2CN3CCc4c([nH]c5ccccc45)C3CC21
geom_drugs
0
0.819442
0.818731
0.304068
0.002389
0.612517
0.427064
0.998681
0.22481
AAEBLTIYGHUNIT-UHFFFAOYSA-N
AAEBLTIYGHUNIT
CC1C2CC(=O)C1CO2
qm9
0
0.622172
1
0.843565
0.527918
0.948394
0.469755
0.381394
0.010761
AAEBXBCBSAHACW-UHFFFAOYSA-N
AAEBXBCBSAHACW
COC1OC=NCC1C
qm9
0
0.58877
0.818731
0.81138
0.614559
0.898692
0.514834
0.727478
0.094079
AAEHBDXVEKNZGM-UHFFFAOYSA-N
AAEHBDXVEKNZGM
C#CCC12CC1C(=O)O2
qm9
0
0.605327
0.818731
0.843565
0.426214
0.830057
0.523138
0.487651
0.15082
AAEKMTGQUDBXAI-UHFFFAOYSA-N
AAEKMTGQUDBXAI
O=S1(=O)CC(O)C(N(CCO)C(=S)Nc2ccccc2)C1
geom_drugs
0
0.679346
0.449329
0.183397
0.031767
0.654717
0.249156
0.999994
0.378674
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SupraDB-LigandScore

What it is

SupraBench/SupraDB-LigandScore is a SupraBench feature dataset generated from the SupraEngineering compute pipeline. Pipeline position: Phase 1 whole-pool ligand-only scoring by score_nodock; Phase 2 publish split.

The table is designed to join with the Phase 0 SupraDB-GEOM identity table and the other feature datasets through inchikey.

Schema

Column Dtype Units Meaning
inchikey string none Primary InChIKey join key shared across SupraDB-GEOM, LigandScore, CavityScore, and PoseFeat.
name string none Guest name from the canonical SupraDB-GEOM identity table.
smiles string none Canonical largest-fragment SMILES from the canonical SupraDB-GEOM identity table.
source string none Winning source from the canonical SupraDB-GEOM identity table after priority deduplication.
S_charge float32 unitless score Ligand charge score combining formal/partial positive charge localization; score_nodock sets pose charge accessibility to zero.
S_hydrophobic float32 unitless score Hydrophobicity score from logP, hydrophobic volume, hydrophobic SASA fraction, and hydrophobic atom fraction.
S_rigidity float32 unitless score Ligand rigidity score derived from rotatable-bond count.
S_desolvation float32 unitless score Ligand desolvation favorability score derived from topological polar surface area.
S_packing float32 unitless score Ligand packing score from molecular volume relative to the CB[7] cavity volume.
S_shape float32 unitless score Ligand shape score from radius of gyration, asphericity, and compactness.
S_conformer_diversity float32 unitless score Conformer concentration score favoring low conformer diversity.
S_boltzmann_concentration float32 unitless score Boltzmann concentration score from the top conformer ensemble weight mass.
S_bad float32 unitless score Penalty-like score for anionic groups, high polarity, flexibility, and asphericity.

Schema meanings are summarized from SupraEngineering/src/features_lib.py and SupraEngineering/src/constants.py. Local feature-code docstrings: Feature computation for CB[7]-guest: the 13 mechanism scores and the 24-dim pose pose_features: Returns (vec24 in POSE_FEATURES order, derived dict for mechanism scores). finalize_pose_vec: Fill PC-dependent + tpsa-dependent fields and the PoseScore (Pose_Energy).

Join key

inchikey is the sole join key for SupraDB-GEOM, SupraDB-LigandScore, SupraDB-PoseFeat, and SupraDB-CavityScore. Downstream loaders should join on this column and treat the feature values as produced by the pipeline order in constants.SCORE_NAMES and constants.POSE_FEATURES.

Provenance

  • Pipeline position: Phase 1 whole-pool ligand-only scoring by score_nodock; Phase 2 publish split.
  • Source pickle: data/pool_full/features/scores.pkl.
  • Computation environment: CRC.
  • Docking/software context: GLIDE 2025u2 / aISS fallback as documented in the integration spec.
  • Pose collapse: pose-collapse=highest Boltzmann weight; PoseFeat keeps the real pose at np.argmax(boltz) and records its boltzmann_weight and delta_e.
  • Row count: 429140.
  • Exact publish.py command: /users/tma2/workspace/SupraDashboard/.venv/bin/python engineering/src/publish.py --pool-scores data/pool_full/features/scores.pkl --identity data/pool_full/guests.csv --out data/pub_full.

Regeneration

Regenerate this dataset by rerunning SupraEngineering/src/publish.py with the same pipeline pickle input and --out target. Use --push only in an authenticated environment with HF_TOKEN set; local generation is fully offline by default.

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