TabQueryBench commited on
Commit
6c7d15f
·
verified ·
1 Parent(s): 424a64f

Resume SynthData0523 main/c3 batch 5

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. .gitattributes +25 -0
  2. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/gen_20260422_200030.log +3 -0
  3. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/input_snapshot.json +36 -0
  4. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/normalized_schema_snapshot.json +68 -0
  5. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/public_gate_report.json +37 -0
  6. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/staged_input_manifest.json +73 -0
  7. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/runtime_result.json +15 -0
  8. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json +17 -0
  9. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv +3 -0
  10. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv +3 -0
  11. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv +3 -0
  12. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_report.json +7 -0
  13. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_transforms_applied.json +1 -0
  14. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/model_input_manifest.json +75 -0
  15. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv +3 -0
  16. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen_meta.json +8 -0
  17. SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/train_20260422_200030.log +3 -0
  18. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_sample.py +39 -0
  19. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_train.py +62 -0
  20. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_test.npy +3 -0
  21. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_train.npy +3 -0
  22. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_test.npy +3 -0
  23. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_train.npy +3 -0
  24. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/info.json +57 -0
  25. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/test.csv +3 -0
  26. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/train.csv +3 -0
  27. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_test.npy +3 -0
  28. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_train.npy +3 -0
  29. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/gen_20260421_004207.log +3 -0
  30. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/input_snapshot.json +36 -0
  31. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/normalized_schema_snapshot.json +68 -0
  32. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/public_gate_report.json +37 -0
  33. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/staged_input_manifest.json +73 -0
  34. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/runtime_result.json +15 -0
  35. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/staged_features.json +17 -0
  36. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv +3 -0
  37. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv +3 -0
  38. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv +3 -0
  39. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_report.json +7 -0
  40. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_transforms_applied.json +1 -0
  41. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/model_input_manifest.json +75 -0
  42. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/real.csv +3 -0
  43. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/test.csv +3 -0
  44. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv +3 -0
  45. SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/train_20260420_233446.log +3 -0
  46. SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_generate.py +5 -0
  47. SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_train.py +16 -0
  48. SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260322_205517.log +3 -0
  49. SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260330_065244.log +3 -0
  50. SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/input_snapshot.json +36 -0
.gitattributes CHANGED
@@ -4272,3 +4272,28 @@ SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline
4272
  SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline_ds/y_train.npy filter=lfs diff=lfs merge=lfs -text
4273
  SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline_ds/y_val.npy filter=lfs diff=lfs merge=lfs -text
4274
  SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/train_20260420_051046.log filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
4272
  SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline_ds/y_train.npy filter=lfs diff=lfs merge=lfs -text
4273
  SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline_ds/y_val.npy filter=lfs diff=lfs merge=lfs -text
4274
  SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/train_20260420_051046.log filter=lfs diff=lfs merge=lfs -text
4275
+ SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/gen_20260422_200030.log filter=lfs diff=lfs merge=lfs -text
4276
+ SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv filter=lfs diff=lfs merge=lfs -text
4277
+ SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv filter=lfs diff=lfs merge=lfs -text
4278
+ SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv filter=lfs diff=lfs merge=lfs -text
4279
+ SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv filter=lfs diff=lfs merge=lfs -text
4280
+ SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/train_20260422_200030.log filter=lfs diff=lfs merge=lfs -text
4281
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_test.npy filter=lfs diff=lfs merge=lfs -text
4282
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_train.npy filter=lfs diff=lfs merge=lfs -text
4283
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_test.npy filter=lfs diff=lfs merge=lfs -text
4284
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_train.npy filter=lfs diff=lfs merge=lfs -text
4285
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/test.csv filter=lfs diff=lfs merge=lfs -text
4286
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/train.csv filter=lfs diff=lfs merge=lfs -text
4287
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_test.npy filter=lfs diff=lfs merge=lfs -text
4288
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_train.npy filter=lfs diff=lfs merge=lfs -text
4289
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/gen_20260421_004207.log filter=lfs diff=lfs merge=lfs -text
4290
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv filter=lfs diff=lfs merge=lfs -text
4291
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv filter=lfs diff=lfs merge=lfs -text
4292
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv filter=lfs diff=lfs merge=lfs -text
4293
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/real.csv filter=lfs diff=lfs merge=lfs -text
4294
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/test.csv filter=lfs diff=lfs merge=lfs -text
4295
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv filter=lfs diff=lfs merge=lfs -text
4296
+ SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/train_20260420_233446.log filter=lfs diff=lfs merge=lfs -text
4297
+ SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260322_205517.log filter=lfs diff=lfs merge=lfs -text
4298
+ SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260330_065244.log filter=lfs diff=lfs merge=lfs -text
4299
+ SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/models_300epochs/train_20260322_205426.log filter=lfs diff=lfs merge=lfs -text
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/gen_20260422_200030.log ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d48e20d8b271d25eb7aa45cba2528e6856073932b346d2c0952eb98be295f86b
3
+ size 756
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/input_snapshot.json ADDED
@@ -0,0 +1,36 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "model": "tabpfgen",
4
+ "inputs": {
5
+ "train_csv": {
6
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv",
7
+ "exists": true,
8
+ "size": 213326,
9
+ "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3"
10
+ },
11
+ "val_csv": {
12
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv",
13
+ "exists": true,
14
+ "size": 26805,
15
+ "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9"
16
+ },
17
+ "test_csv": {
18
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv",
19
+ "exists": true,
20
+ "size": 26871,
21
+ "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad"
22
+ },
23
+ "profile_json": {
24
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json",
25
+ "exists": true,
26
+ "size": 2635,
27
+ "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335"
28
+ },
29
+ "contract_json": {
30
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json",
31
+ "exists": true,
32
+ "size": 2422,
33
+ "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca"
34
+ }
35
+ }
36
+ }
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/normalized_schema_snapshot.json ADDED
@@ -0,0 +1,68 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "target_column": "EI",
4
+ "task_type": "classification",
5
+ "columns": [
6
+ {
7
+ "name": "EI",
8
+ "role": "target",
9
+ "semantic_type": "categorical",
10
+ "nullable": false,
11
+ "missing_tokens": [],
12
+ "parse_format": null,
13
+ "impute_strategy": "mode",
14
+ "profile_stats": {
15
+ "missing_rate": 0.0,
16
+ "unique_count": 3,
17
+ "unique_ratio": 0.001176,
18
+ "example_values": [
19
+ "EI",
20
+ "IE",
21
+ "N"
22
+ ]
23
+ }
24
+ },
25
+ {
26
+ "name": "ATRINS-DONOR-521",
27
+ "role": "id",
28
+ "semantic_type": "id",
29
+ "nullable": false,
30
+ "missing_tokens": [],
31
+ "parse_format": null,
32
+ "impute_strategy": "keep_raw",
33
+ "profile_stats": {
34
+ "missing_rate": 0.0,
35
+ "unique_count": 2541,
36
+ "unique_ratio": 0.99608,
37
+ "example_values": [
38
+ "HUMH19-DONOR-2562",
39
+ "HUMMHCD8A-ACCEPTOR-733",
40
+ "HUMGCB1-ACCEPTOR-6344",
41
+ "HUMNEBB-NEG-241",
42
+ "HUMATP1A2-NEG-2101"
43
+ ]
44
+ }
45
+ },
46
+ {
47
+ "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
48
+ "role": "id",
49
+ "semantic_type": "id",
50
+ "nullable": false,
51
+ "missing_tokens": [],
52
+ "parse_format": null,
53
+ "impute_strategy": "keep_raw",
54
+ "profile_stats": {
55
+ "missing_rate": 0.0,
56
+ "unique_count": 2426,
57
+ "unique_ratio": 0.951,
58
+ "example_values": [
59
+ "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG",
60
+ "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT",
61
+ "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT",
62
+ "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA",
63
+ "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA"
64
+ ]
65
+ }
66
+ }
67
+ ]
68
+ }
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/public_gate_report.json ADDED
@@ -0,0 +1,37 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "status": "pass",
4
+ "checks": [
5
+ {
6
+ "check_id": "PG001_csv_parse_ok",
7
+ "status": "pass"
8
+ },
9
+ {
10
+ "check_id": "PG002_split_header_consistent",
11
+ "status": "pass"
12
+ },
13
+ {
14
+ "check_id": "PG003_profile_header_match",
15
+ "status": "pass"
16
+ },
17
+ {
18
+ "check_id": "PG004_missing_token_normalized",
19
+ "status": "pass"
20
+ },
21
+ {
22
+ "check_id": "PG005_semantic_type_validated",
23
+ "status": "pass"
24
+ },
25
+ {
26
+ "check_id": "PG006_target_defined_and_valid",
27
+ "status": "pass"
28
+ }
29
+ ],
30
+ "target_column": "EI",
31
+ "task_type": "classification",
32
+ "input_splits": {
33
+ "train": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv",
34
+ "val": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv",
35
+ "test": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv"
36
+ }
37
+ }
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/staged_input_manifest.json ADDED
@@ -0,0 +1,73 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "target_column": "EI",
4
+ "task_type": "classification",
5
+ "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv",
6
+ "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv",
7
+ "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv",
8
+ "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json",
9
+ "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/public_gate_report.json",
10
+ "column_schema": [
11
+ {
12
+ "name": "EI",
13
+ "role": "target",
14
+ "semantic_type": "categorical",
15
+ "nullable": false,
16
+ "missing_tokens": [],
17
+ "parse_format": null,
18
+ "impute_strategy": "mode",
19
+ "profile_stats": {
20
+ "missing_rate": 0.0,
21
+ "unique_count": 3,
22
+ "unique_ratio": 0.001176,
23
+ "example_values": [
24
+ "EI",
25
+ "IE",
26
+ "N"
27
+ ]
28
+ }
29
+ },
30
+ {
31
+ "name": "ATRINS-DONOR-521",
32
+ "role": "id",
33
+ "semantic_type": "id",
34
+ "nullable": false,
35
+ "missing_tokens": [],
36
+ "parse_format": null,
37
+ "impute_strategy": "keep_raw",
38
+ "profile_stats": {
39
+ "missing_rate": 0.0,
40
+ "unique_count": 2541,
41
+ "unique_ratio": 0.99608,
42
+ "example_values": [
43
+ "HUMH19-DONOR-2562",
44
+ "HUMMHCD8A-ACCEPTOR-733",
45
+ "HUMGCB1-ACCEPTOR-6344",
46
+ "HUMNEBB-NEG-241",
47
+ "HUMATP1A2-NEG-2101"
48
+ ]
49
+ }
50
+ },
51
+ {
52
+ "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
53
+ "role": "id",
54
+ "semantic_type": "id",
55
+ "nullable": false,
56
+ "missing_tokens": [],
57
+ "parse_format": null,
58
+ "impute_strategy": "keep_raw",
59
+ "profile_stats": {
60
+ "missing_rate": 0.0,
61
+ "unique_count": 2426,
62
+ "unique_ratio": 0.951,
63
+ "example_values": [
64
+ "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG",
65
+ "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT",
66
+ "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT",
67
+ "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA",
68
+ "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA"
69
+ ]
70
+ }
71
+ }
72
+ ]
73
+ }
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/runtime_result.json ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "model": "tabpfgen",
4
+ "run_id": "tabpfgen-c3-20260422_200030",
5
+ "public_gate_status": "pass",
6
+ "adapter_ready_status": "pass",
7
+ "train_status": "success",
8
+ "generate_status": "success",
9
+ "reason_code": null,
10
+ "reason_detail": null,
11
+ "artifacts": {
12
+ "synthetic_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv",
13
+ "model_path": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030"
14
+ }
15
+ }
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json ADDED
@@ -0,0 +1,17 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ [
2
+ {
3
+ "feature_name": "EI",
4
+ "data_type": "categorical",
5
+ "is_target": true
6
+ },
7
+ {
8
+ "feature_name": "ATRINS-DONOR-521",
9
+ "data_type": "ID",
10
+ "is_target": false
11
+ },
12
+ {
13
+ "feature_name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
14
+ "data_type": "ID",
15
+ "is_target": false
16
+ }
17
+ ]
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:be0c5bad6c59669b0f6ea2a0c953d0bb03ce62ce625357b1b136eabc2de34d99
3
+ size 26550
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f4b86543124166673bed177c1bb1e1806d04bbc8aaaa2c545b57c7b538aad82c
3
+ size 210774
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:db595b372b40df454d8ad8152b81c613321b79f80033c020da635825581237ea
3
+ size 26486
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_report.json ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ {
2
+ "adapter_ready_status": "pass",
3
+ "adapter_fail_reason_code": null,
4
+ "adapter_fail_detail": null,
5
+ "adapter_transforms_applied": [],
6
+ "model_input_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/model_input_manifest.json"
7
+ }
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_transforms_applied.json ADDED
@@ -0,0 +1 @@
 
 
1
+ []
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/model_input_manifest.json ADDED
@@ -0,0 +1,75 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "model": "tabpfgen",
4
+ "target_column": "EI",
5
+ "task_type": "classification",
6
+ "column_schema": [
7
+ {
8
+ "name": "EI",
9
+ "role": "target",
10
+ "semantic_type": "categorical",
11
+ "nullable": false,
12
+ "missing_tokens": [],
13
+ "parse_format": null,
14
+ "impute_strategy": "mode",
15
+ "profile_stats": {
16
+ "missing_rate": 0.0,
17
+ "unique_count": 3,
18
+ "unique_ratio": 0.001176,
19
+ "example_values": [
20
+ "EI",
21
+ "IE",
22
+ "N"
23
+ ]
24
+ }
25
+ },
26
+ {
27
+ "name": "ATRINS-DONOR-521",
28
+ "role": "id",
29
+ "semantic_type": "id",
30
+ "nullable": false,
31
+ "missing_tokens": [],
32
+ "parse_format": null,
33
+ "impute_strategy": "keep_raw",
34
+ "profile_stats": {
35
+ "missing_rate": 0.0,
36
+ "unique_count": 2541,
37
+ "unique_ratio": 0.99608,
38
+ "example_values": [
39
+ "HUMH19-DONOR-2562",
40
+ "HUMMHCD8A-ACCEPTOR-733",
41
+ "HUMGCB1-ACCEPTOR-6344",
42
+ "HUMNEBB-NEG-241",
43
+ "HUMATP1A2-NEG-2101"
44
+ ]
45
+ }
46
+ },
47
+ {
48
+ "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
49
+ "role": "id",
50
+ "semantic_type": "id",
51
+ "nullable": false,
52
+ "missing_tokens": [],
53
+ "parse_format": null,
54
+ "impute_strategy": "keep_raw",
55
+ "profile_stats": {
56
+ "missing_rate": 0.0,
57
+ "unique_count": 2426,
58
+ "unique_ratio": 0.951,
59
+ "example_values": [
60
+ "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG",
61
+ "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT",
62
+ "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT",
63
+ "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA",
64
+ "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA"
65
+ ]
66
+ }
67
+ }
68
+ ],
69
+ "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/staged_input_manifest.json",
70
+ "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv",
71
+ "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv",
72
+ "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv",
73
+ "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json",
74
+ "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/public_gate_report.json"
75
+ }
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8a10c44893160ff1b2d7e4d5be10705df520ccbfd98f7b909c073009268a48ff
3
+ size 210353
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen_meta.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "csv_path": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv",
3
+ "json_path": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json",
4
+ "target_col": "EI",
5
+ "is_classification": true,
6
+ "n_rows": 2551,
7
+ "n_cols": 3
8
+ }
SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/train_20260422_200030.log ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fb6be65831df75149e19ff03a87b88bb4acc9cc1fec02de1888fd8bf8749c84a
3
+ size 186
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_sample.py ADDED
@@ -0,0 +1,39 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import os, sys, subprocess
2
+
3
+ work_dir = "/work/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446"
4
+ dataname = "tabsyn_c3"
5
+ output_csv = "/work/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv"
6
+ tabsyn_root = "/workspace/tabsyn"
7
+
8
+ assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}"
9
+
10
+ old = os.environ.get("PYTHONPATH", "")
11
+ os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "")
12
+ sys.path.insert(0, tabsyn_root)
13
+
14
+ os.chdir(tabsyn_root)
15
+
16
+ # Ensure data symlink exists
17
+ data_link = os.path.join(tabsyn_root, "data", dataname)
18
+ data_src = os.path.join(work_dir, "data", dataname)
19
+ os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True)
20
+ if os.path.exists(data_link):
21
+ os.remove(data_link)
22
+ os.symlink(data_src, data_link)
23
+
24
+ print(f"[TabSyn] Sampling 2551 rows")
25
+ env = os.environ.copy()
26
+ env.setdefault("TABSYN_RESUME", "1")
27
+ ret = subprocess.run(
28
+ [sys.executable, "main.py",
29
+ "--dataname", dataname,
30
+ "--mode", "sample",
31
+ "--method", "tabsyn",
32
+ "--gpu", "0",
33
+ "--save_path", output_csv],
34
+ cwd=tabsyn_root,
35
+ env=env
36
+ )
37
+ if ret.returncode != 0:
38
+ sys.exit(ret.returncode)
39
+ print(f"[TabSyn] Saved -> {output_csv}")
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_train.py ADDED
@@ -0,0 +1,62 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import os, sys, subprocess
2
+
3
+ work_dir = "/work/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446"
4
+ dataname = "tabsyn_c3"
5
+ tabsyn_root = "/workspace/tabsyn"
6
+
7
+ assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}"
8
+
9
+ old = os.environ.get("PYTHONPATH", "")
10
+ os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "")
11
+ sys.path.insert(0, tabsyn_root)
12
+
13
+ os.chdir(tabsyn_root)
14
+
15
+ # Symlink data dir into TabSyn data/
16
+ data_link = os.path.join(tabsyn_root, "data", dataname)
17
+ data_src = os.path.join(work_dir, "data", dataname)
18
+ os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True)
19
+ if os.path.exists(data_link):
20
+ os.remove(data_link)
21
+ os.symlink(data_src, data_link)
22
+
23
+ env = os.environ.copy()
24
+ env.setdefault("TABSYN_RESUME", "1")
25
+ _te = None
26
+ if _te is not None:
27
+ env["TABSYN_VAE_EPOCHS"] = str(_te)
28
+ env["TABSYN_DIFFUSION_MAX_EPOCHS"] = str(max(_te + 1, 2))
29
+
30
+ # Data preprocessing is done on the host side (_prepare_data_dir)
31
+ # which creates .npy files, train/test CSVs, and info.json
32
+
33
+ # Step 1: Train VAE (produces latent embeddings)
34
+ print(f"[TabSyn] Step 1/2: Training VAE in {tabsyn_root}, dataname={dataname}")
35
+ ret = subprocess.run(
36
+ [sys.executable, "main.py",
37
+ "--dataname", dataname,
38
+ "--mode", "train",
39
+ "--method", "vae",
40
+ "--gpu", "0"],
41
+ cwd=tabsyn_root,
42
+ env=env
43
+ )
44
+ if ret.returncode != 0:
45
+ print("[TabSyn] VAE training failed")
46
+ sys.exit(ret.returncode)
47
+
48
+ # Step 2: Train diffusion model on latent space
49
+ print(f"[TabSyn] Step 2/2: Training diffusion model")
50
+ ret = subprocess.run(
51
+ [sys.executable, "main.py",
52
+ "--dataname", dataname,
53
+ "--mode", "train",
54
+ "--method", "tabsyn",
55
+ "--gpu", "0"],
56
+ cwd=tabsyn_root,
57
+ env=env
58
+ )
59
+ if ret.returncode != 0:
60
+ print("[TabSyn] Diffusion training failed")
61
+ sys.exit(ret.returncode)
62
+ print("[TabSyn] Training complete (VAE + Diffusion)")
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_test.npy ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fcceec7eda6e86ff9799b933ebfaaa423aca45ad851421202b7942e900a6bb75
3
+ size 2688
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_train.npy ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b85c1a776dc70914445c558fd168d71dee05235e7a0f217023d0b77be66bcd62
3
+ size 23080
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_test.npy ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0e76d28bbabe00cb78a9b8a121088f0fd5d74935716d02c3f83ee37d63f3dba6
3
+ size 1408
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_train.npy ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ee8bfbf882599c36f3320ced30aa9db82a354d2c6ca43ce4b6112f2771e90704
3
+ size 11604
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/info.json ADDED
@@ -0,0 +1,57 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "name": "tabsyn_c3",
3
+ "task_type": "multiclass",
4
+ "n_num_features": 1,
5
+ "n_cat_features": 1,
6
+ "train_size": 2869,
7
+ "num_col_idx": [
8
+ 1
9
+ ],
10
+ "cat_col_idx": [
11
+ 2
12
+ ],
13
+ "target_col_idx": [
14
+ 0
15
+ ],
16
+ "column_names": [
17
+ "EI",
18
+ "ATRINS-DONOR-521",
19
+ "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG"
20
+ ],
21
+ "train_num": 2869,
22
+ "test_num": 320,
23
+ "header": 0,
24
+ "file_type": "csv",
25
+ "data_path": "data/tabsyn_c3/train.csv",
26
+ "test_path": null,
27
+ "idx_mapping": {
28
+ "0": 2,
29
+ "1": 0,
30
+ "2": 1
31
+ },
32
+ "inverse_idx_mapping": {
33
+ "2": 0,
34
+ "0": 1,
35
+ "1": 2
36
+ },
37
+ "idx_name_mapping": {
38
+ "0": "EI",
39
+ "1": "ATRINS-DONOR-521",
40
+ "2": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG"
41
+ },
42
+ "n_classes": 3,
43
+ "metadata": {
44
+ "columns": {
45
+ "1": {
46
+ "sdtype": "numerical",
47
+ "computer_representation": "Float"
48
+ },
49
+ "2": {
50
+ "sdtype": "categorical"
51
+ },
52
+ "0": {
53
+ "sdtype": "categorical"
54
+ }
55
+ }
56
+ }
57
+ }
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/test.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9e7236117a72795aa9a0bae6cac4f022ecdd249168315f9a2f989f668bc35b4a
3
+ size 2084
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/train.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8318611a30eea3817eab5e2a68bc0c6b4dad8b9ff813c663c4432a9cefcfc014
3
+ size 32169
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_test.npy ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0cd650637cdf97db773850db1e519c5d9b4f8c2d32ea31eab717b94cdc1229a4
3
+ size 2688
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_train.npy ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:81f8cc42b7ff5049f57014356392f8a4819d64c437bfd9f8daa073cf982522f0
3
+ size 23080
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/gen_20260421_004207.log ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2eedc1eb9edf4fc9e786bd053470588a42ef62aba5f4ef0bc0dfc8a80e2ed7fe
3
+ size 665
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/input_snapshot.json ADDED
@@ -0,0 +1,36 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "model": "tabsyn",
4
+ "inputs": {
5
+ "train_csv": {
6
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv",
7
+ "exists": true,
8
+ "size": 213326,
9
+ "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3"
10
+ },
11
+ "val_csv": {
12
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv",
13
+ "exists": true,
14
+ "size": 26805,
15
+ "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9"
16
+ },
17
+ "test_csv": {
18
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv",
19
+ "exists": true,
20
+ "size": 26871,
21
+ "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad"
22
+ },
23
+ "profile_json": {
24
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json",
25
+ "exists": true,
26
+ "size": 2635,
27
+ "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335"
28
+ },
29
+ "contract_json": {
30
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json",
31
+ "exists": true,
32
+ "size": 2422,
33
+ "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca"
34
+ }
35
+ }
36
+ }
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/normalized_schema_snapshot.json ADDED
@@ -0,0 +1,68 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "target_column": "EI",
4
+ "task_type": "classification",
5
+ "columns": [
6
+ {
7
+ "name": "EI",
8
+ "role": "target",
9
+ "semantic_type": "categorical",
10
+ "nullable": false,
11
+ "missing_tokens": [],
12
+ "parse_format": null,
13
+ "impute_strategy": "mode",
14
+ "profile_stats": {
15
+ "missing_rate": 0.0,
16
+ "unique_count": 3,
17
+ "unique_ratio": 0.001176,
18
+ "example_values": [
19
+ "EI",
20
+ "IE",
21
+ "N"
22
+ ]
23
+ }
24
+ },
25
+ {
26
+ "name": "ATRINS-DONOR-521",
27
+ "role": "id",
28
+ "semantic_type": "id",
29
+ "nullable": false,
30
+ "missing_tokens": [],
31
+ "parse_format": null,
32
+ "impute_strategy": "keep_raw",
33
+ "profile_stats": {
34
+ "missing_rate": 0.0,
35
+ "unique_count": 2541,
36
+ "unique_ratio": 0.99608,
37
+ "example_values": [
38
+ "HUMH19-DONOR-2562",
39
+ "HUMMHCD8A-ACCEPTOR-733",
40
+ "HUMGCB1-ACCEPTOR-6344",
41
+ "HUMNEBB-NEG-241",
42
+ "HUMATP1A2-NEG-2101"
43
+ ]
44
+ }
45
+ },
46
+ {
47
+ "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
48
+ "role": "id",
49
+ "semantic_type": "id",
50
+ "nullable": false,
51
+ "missing_tokens": [],
52
+ "parse_format": null,
53
+ "impute_strategy": "keep_raw",
54
+ "profile_stats": {
55
+ "missing_rate": 0.0,
56
+ "unique_count": 2426,
57
+ "unique_ratio": 0.951,
58
+ "example_values": [
59
+ "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG",
60
+ "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT",
61
+ "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT",
62
+ "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA",
63
+ "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA"
64
+ ]
65
+ }
66
+ }
67
+ ]
68
+ }
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/public_gate_report.json ADDED
@@ -0,0 +1,37 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "status": "pass",
4
+ "checks": [
5
+ {
6
+ "check_id": "PG001_csv_parse_ok",
7
+ "status": "pass"
8
+ },
9
+ {
10
+ "check_id": "PG002_split_header_consistent",
11
+ "status": "pass"
12
+ },
13
+ {
14
+ "check_id": "PG003_profile_header_match",
15
+ "status": "pass"
16
+ },
17
+ {
18
+ "check_id": "PG004_missing_token_normalized",
19
+ "status": "pass"
20
+ },
21
+ {
22
+ "check_id": "PG005_semantic_type_validated",
23
+ "status": "pass"
24
+ },
25
+ {
26
+ "check_id": "PG006_target_defined_and_valid",
27
+ "status": "pass"
28
+ }
29
+ ],
30
+ "target_column": "EI",
31
+ "task_type": "classification",
32
+ "input_splits": {
33
+ "train": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv",
34
+ "val": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv",
35
+ "test": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv"
36
+ }
37
+ }
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/staged_input_manifest.json ADDED
@@ -0,0 +1,73 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "target_column": "EI",
4
+ "task_type": "classification",
5
+ "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv",
6
+ "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv",
7
+ "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv",
8
+ "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/staged_features.json",
9
+ "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/public_gate_report.json",
10
+ "column_schema": [
11
+ {
12
+ "name": "EI",
13
+ "role": "target",
14
+ "semantic_type": "categorical",
15
+ "nullable": false,
16
+ "missing_tokens": [],
17
+ "parse_format": null,
18
+ "impute_strategy": "mode",
19
+ "profile_stats": {
20
+ "missing_rate": 0.0,
21
+ "unique_count": 3,
22
+ "unique_ratio": 0.001176,
23
+ "example_values": [
24
+ "EI",
25
+ "IE",
26
+ "N"
27
+ ]
28
+ }
29
+ },
30
+ {
31
+ "name": "ATRINS-DONOR-521",
32
+ "role": "id",
33
+ "semantic_type": "id",
34
+ "nullable": false,
35
+ "missing_tokens": [],
36
+ "parse_format": null,
37
+ "impute_strategy": "keep_raw",
38
+ "profile_stats": {
39
+ "missing_rate": 0.0,
40
+ "unique_count": 2541,
41
+ "unique_ratio": 0.99608,
42
+ "example_values": [
43
+ "HUMH19-DONOR-2562",
44
+ "HUMMHCD8A-ACCEPTOR-733",
45
+ "HUMGCB1-ACCEPTOR-6344",
46
+ "HUMNEBB-NEG-241",
47
+ "HUMATP1A2-NEG-2101"
48
+ ]
49
+ }
50
+ },
51
+ {
52
+ "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
53
+ "role": "id",
54
+ "semantic_type": "id",
55
+ "nullable": false,
56
+ "missing_tokens": [],
57
+ "parse_format": null,
58
+ "impute_strategy": "keep_raw",
59
+ "profile_stats": {
60
+ "missing_rate": 0.0,
61
+ "unique_count": 2426,
62
+ "unique_ratio": 0.951,
63
+ "example_values": [
64
+ "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG",
65
+ "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT",
66
+ "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT",
67
+ "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA",
68
+ "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA"
69
+ ]
70
+ }
71
+ }
72
+ ]
73
+ }
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/runtime_result.json ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "model": "tabsyn",
4
+ "run_id": "tabsyn-c3-20260420_233446",
5
+ "public_gate_status": "pass",
6
+ "adapter_ready_status": "pass",
7
+ "train_status": "success",
8
+ "generate_status": "success",
9
+ "reason_code": null,
10
+ "reason_detail": null,
11
+ "artifacts": {
12
+ "synthetic_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv",
13
+ "model_path": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446"
14
+ }
15
+ }
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/staged_features.json ADDED
@@ -0,0 +1,17 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ [
2
+ {
3
+ "feature_name": "EI",
4
+ "data_type": "categorical",
5
+ "is_target": true
6
+ },
7
+ {
8
+ "feature_name": "ATRINS-DONOR-521",
9
+ "data_type": "ID",
10
+ "is_target": false
11
+ },
12
+ {
13
+ "feature_name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
14
+ "data_type": "ID",
15
+ "is_target": false
16
+ }
17
+ ]
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:be0c5bad6c59669b0f6ea2a0c953d0bb03ce62ce625357b1b136eabc2de34d99
3
+ size 26550
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f4b86543124166673bed177c1bb1e1806d04bbc8aaaa2c545b57c7b538aad82c
3
+ size 210774
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:db595b372b40df454d8ad8152b81c613321b79f80033c020da635825581237ea
3
+ size 26486
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_report.json ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ {
2
+ "adapter_ready_status": "pass",
3
+ "adapter_fail_reason_code": null,
4
+ "adapter_fail_detail": null,
5
+ "adapter_transforms_applied": [],
6
+ "model_input_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/model_input_manifest.json"
7
+ }
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_transforms_applied.json ADDED
@@ -0,0 +1 @@
 
 
1
+ []
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/model_input_manifest.json ADDED
@@ -0,0 +1,75 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "model": "tabsyn",
4
+ "target_column": "EI",
5
+ "task_type": "classification",
6
+ "column_schema": [
7
+ {
8
+ "name": "EI",
9
+ "role": "target",
10
+ "semantic_type": "categorical",
11
+ "nullable": false,
12
+ "missing_tokens": [],
13
+ "parse_format": null,
14
+ "impute_strategy": "mode",
15
+ "profile_stats": {
16
+ "missing_rate": 0.0,
17
+ "unique_count": 3,
18
+ "unique_ratio": 0.001176,
19
+ "example_values": [
20
+ "EI",
21
+ "IE",
22
+ "N"
23
+ ]
24
+ }
25
+ },
26
+ {
27
+ "name": "ATRINS-DONOR-521",
28
+ "role": "id",
29
+ "semantic_type": "id",
30
+ "nullable": false,
31
+ "missing_tokens": [],
32
+ "parse_format": null,
33
+ "impute_strategy": "keep_raw",
34
+ "profile_stats": {
35
+ "missing_rate": 0.0,
36
+ "unique_count": 2541,
37
+ "unique_ratio": 0.99608,
38
+ "example_values": [
39
+ "HUMH19-DONOR-2562",
40
+ "HUMMHCD8A-ACCEPTOR-733",
41
+ "HUMGCB1-ACCEPTOR-6344",
42
+ "HUMNEBB-NEG-241",
43
+ "HUMATP1A2-NEG-2101"
44
+ ]
45
+ }
46
+ },
47
+ {
48
+ "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
49
+ "role": "id",
50
+ "semantic_type": "id",
51
+ "nullable": false,
52
+ "missing_tokens": [],
53
+ "parse_format": null,
54
+ "impute_strategy": "keep_raw",
55
+ "profile_stats": {
56
+ "missing_rate": 0.0,
57
+ "unique_count": 2426,
58
+ "unique_ratio": 0.951,
59
+ "example_values": [
60
+ "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG",
61
+ "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT",
62
+ "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT",
63
+ "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA",
64
+ "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA"
65
+ ]
66
+ }
67
+ }
68
+ ],
69
+ "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/staged_input_manifest.json",
70
+ "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv",
71
+ "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv",
72
+ "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv",
73
+ "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/staged_features.json",
74
+ "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/public_gate_report.json"
75
+ }
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/real.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8318611a30eea3817eab5e2a68bc0c6b4dad8b9ff813c663c4432a9cefcfc014
3
+ size 32169
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/test.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9e7236117a72795aa9a0bae6cac4f022ecdd249168315f9a2f989f668bc35b4a
3
+ size 2084
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:786774393ca3f60bca374014012d21ee43516d4e23e89c058a7f52eaa2295354
3
+ size 41931
SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/train_20260420_233446.log ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7118dbf6f6edb958b4d00586435a08939d60e39489392c498232ecade098edf8
3
+ size 2531016
SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_generate.py ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ from ctgan.synthesizers.tvae import TVAE
2
+ model = TVAE.load("/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/models_300epochs/tvae_300epochs.pt")
3
+ samples = model.sample(2551)
4
+ samples.to_csv("/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/tvae-c3-2551-20260330_065244.csv", index=False)
5
+ print(f"[TVAE] Generated 2551 rows -> /work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/tvae-c3-2551-20260330_065244.csv")
SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_train.py ADDED
@@ -0,0 +1,16 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import json, sys
2
+ import pandas as pd
3
+ from ctgan.data import read_csv
4
+ from ctgan.synthesizers.tvae import TVAE
5
+
6
+ csv_path = "/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/staged/public/train.csv"
7
+ meta_path = "/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/tvae_metadata.json"
8
+ save_path = "/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/models_300epochs/tvae_300epochs.pt"
9
+ epochs = 300
10
+
11
+ data, discrete_columns = read_csv(csv_path, meta_path, header=True, discrete=None)
12
+ print(f"[TVAE] Training on {len(data)} rows, {len(data.columns)} cols, epochs={epochs}")
13
+ model = TVAE(epochs=epochs, batch_size=500)
14
+ model.fit(data, discrete_columns)
15
+ model.save(save_path)
16
+ print(f"[TVAE] Model saved -> {save_path}")
SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260322_205517.log ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:322026ca861f2521165912a7bb2ac73444ecf2eb1cc804173a74b2ab34955de6
3
+ size 126
SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260330_065244.log ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8633e92b992a170dc5bc0b06885f3cfea523a1ee3a65f94b3d54ec0f62cc7885
3
+ size 126
SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/input_snapshot.json ADDED
@@ -0,0 +1,36 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_id": "c3",
3
+ "model": "tvae",
4
+ "inputs": {
5
+ "train_csv": {
6
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv",
7
+ "exists": true,
8
+ "size": 213326,
9
+ "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3"
10
+ },
11
+ "val_csv": {
12
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv",
13
+ "exists": true,
14
+ "size": 26805,
15
+ "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9"
16
+ },
17
+ "test_csv": {
18
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv",
19
+ "exists": true,
20
+ "size": 26871,
21
+ "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad"
22
+ },
23
+ "profile_json": {
24
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json",
25
+ "exists": true,
26
+ "size": 2635,
27
+ "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335"
28
+ },
29
+ "contract_json": {
30
+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json",
31
+ "exists": true,
32
+ "size": 2422,
33
+ "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca"
34
+ }
35
+ }
36
+ }