Datasets:

TerminatorJ
/

icSHAPE

Tasks:

Text Classification

Size:

10K<n<100K

License:

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train

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The dataset generation failed

Error code:   DatasetGenerationError
Exception:    ArrowInvalid
Message:      Failed to parse string: 'HeLa' as a scalar of type int64
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2011, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 585, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2302, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2261, in cast_table_to_schema
                  arrays = [cast_array_to_feature(table[name], feature) for name, feature in features.items()]
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2261, in <listcomp>
                  arrays = [cast_array_to_feature(table[name], feature) for name, feature in features.items()]
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1802, in wrapper
                  return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1802, in <listcomp>
                  return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2116, in cast_array_to_feature
                  return array_cast(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1804, in wrapper
                  return func(array, *args, **kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1963, in array_cast
                  return array.cast(pa_type)
                File "pyarrow/array.pxi", line 996, in pyarrow.lib.Array.cast
                File "/src/services/worker/.venv/lib/python3.9/site-packages/pyarrow/compute.py", line 404, in cast
                  return call_function("cast", [arr], options, memory_pool)
                File "pyarrow/_compute.pyx", line 590, in pyarrow._compute.call_function
                File "pyarrow/_compute.pyx", line 385, in pyarrow._compute.Function.call
                File "pyarrow/error.pxi", line 154, in pyarrow.lib.pyarrow_internal_check_status
                File "pyarrow/error.pxi", line 91, in pyarrow.lib.check_status
              pyarrow.lib.ArrowInvalid: Failed to parse string: 'HeLa' as a scalar of type int64
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1529, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1154, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1027, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1122, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1882, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2038, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset

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Ensemble_version string	Ensemble_id string	transcript_length int64	SHAPE_reactivity string	reactivity_len int64	Transcript_sequences string	Sequence_length int64	filter bool	cell_types int64
ENST00000318041.13	ENST00000318041	1,728	NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL ...	1,728	GGGGGCTGTAGCTGGTGAGAGGAAGTCCTAGAGGCTATGGACACTCTGCTGCTGGGATCACCGAGATGAGCAGCAGCTGCTCAGGGCTGAGCAGGGTCCTGGTGGCCGTGGCTACAGCCCTGGTGTCTGCCTCCTCCCCCTGCCCCCAGGCCTGGGGCCCCCCAGGGGTCCAGTATGGGCAGCCAGGCAGGTCCGTGAAGCTGTGTTGTCCTGGAGTGACTGCCGGGGACCCAGTGTCCTGGTTTCGGGATGGGGAGCCAAAGCTGCTCCAGGGACCTGACTCTGGGCTAGGGCATGAACTGGTCCTGGCCCAGGCAGAC...	1,728	true	293
ENST00000589749.1	ENST00000589749	573	NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL ...	573	ATATTAGGAGCTGTGGCAGGCTTGGTTTCTATAGGAACCCTGAGGTGGCGGCAGGGCCACCACATCCAGCACTCTCAGTGTGTGCGTAGAGCCCATTAGGGCTGGGGTGACGTGGCAGAGCCGGCCATGGAAGGGGCTACACACCCCTTCTTAAAGGCGTGTCCACACTCCTCAGTGGGCCCTTCCAGACCCAGACCCAGCTAGGCCTGTGTCCTGTGTCCGGCCCAGCCTCCCTAACACAGATGTTTGTGTTTCAGCTCCCAGAAGGCAGGATTCTGAAGACCACTCCAGCGATATGTTCAACTATGAAGAATACTGCA...	573	true	293
ENST00000409516.7	ENST00000409516	895	NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL 0.287 0.822 0.335 0.531 0.044 0.19 0.141 0.677 0.853 0.334 0.382 0.141 0.189 0.044 0.38 0.236 0.332 0.428 0.282 0.139 0.0 0.616 0.843 1.0 0.47 0.043 0.186 0.328 0.375 0.911 1.0 0.659 0.517 0.52 1.0 0.187 0.758 0.092 0.092 0.044 0.092 0.38 0.044 0.383 0.142 0.287 0....	895	CTGCTTCCGGTCGGTGGCGCTTCTCTCTGGCCCGAGCCAGCATGATCCGCTGGGCCCCCAGCGCATCTCCTGGAAGAGCCCACTCACCCTGGACGAGCTCTTCGGTAGCCTCAGACCGTCCTTGAAGAGGATGACTGAGACATTATGGGCCACGCGCTGTGTGTCTGCTCTCGGGGAACTGTCATCATTGACAATAAGCGCTACCTCTTCATCCAGAAACTGGGGGAGGGAGACTTGAAGCCCACCAATATATTGCTTGGAGATGAGGGGCAGCCAGTTTTAATGGACTTGGGTTCCATGAATCAAGCATGCATCCATGT...	895	true	293
ENST00000527779.1	ENST00000527779	842	NULL NULL NULL NULL NULL NULL NULL 0.0 0.101 0.604 0.302 0.201 0.504 0.101 0.101 0.0 0.302 0.503 0.403 0.705 0.201 0.503 0.503 0.403 0.704 0.503 1.0 0.704 0.906 0.101 0.101 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.302 0.0 0.302 1.0 0.201 0.404 0.505 0.303 0.303 0.505 0.709 0.405 0.81 0.911 0.911 0.914 0.609 1.0 1.0 0.305 0.102 0....	842	TGGTGGAGCTGCCGCGCTGTCCGCGTTATCTCCTCCCGGTGAGAACGAACCGCAGTGTCCACCGGCGAGGAGCCAGCCCTGTCCCGGTCAGAGAAAGACGACGAGGATACCTGGGAGCGGGCGGCGGCCGGGCTGGGCCGCGCCGGTGCGGGCTGGCGACTCTGCTCCTCCGCTTGCTGCTGTCTCTGGGAACTGGGTGCCAGCGCTGAGGGGCTTCCAGCGGACAGGGACCCCCTTCCCCGGCTCCCCTGCCCACCCTGCCGGGGAGGGCGGAAGATGCCGGTGAAGAAGAAGAGAAAATCCCCTGGGGTGGCAGCAGC...	842	true	293
ENST00000576646.7	ENST00000576646	629	NULL NULL NULL NULL NULL 0.665 0.546 0.467 0.384 0.581 0.305 0.581 0.996 0.996 0.852 0.577 1.0 0.499 1.0 1.0 0.539 0.578 0.539 0.461 0.66 0.461 0.422 1.0 0.584 0.704 0.144 0.224 0.184 0.305 0.023 0.305 0.064 0.064 0.103 0.063 0.063 0.509 0.063 0.225 0.977 0.796 0.307 0.266 0.021 0.184 0.225 0.021 0.143 0.184 0.184 0.10...	629	CATACACGTCGTGACTTGGAACGTGGCTTCGGCAGCGCCCCCTCTAGATCTCAGTGACCTGCTTCAGCTGAACAACCGGAACCTCAATCTTGACATATATGTTATTGGGAATTGAACTCTGGGATCATAAGCCTCCTTTCCGATGCTGCCTTTAATGACTCGTGGAGCAGTTTCCTCATGGATGTGCTTTCCCCTCTGAGCTTCATCAAGGTCTCCCATGTCCGTATGCAGGGGATCCTCTTACTGGTCTTTGCCAAGTATCAGCATTTGCCCTATATCCAGATTCTGTCTACTAAATCCACCCCCACTGGCCTGTTTGG...	629	true	293
ENST00000632673.1	ENST00000632673	1,679	NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL ...	1,679	CGGCGCTGGGGGCGGCAGGTTGCGGCGGCGCCGGAGCGGGTCTCCAGGCTGGCGAGCGCCCAGGACAGGCATGTTGTTGGGACTGGCGGCCATGGAGCTGAAGGTGTGGGTGGATGGCATCCAGCGTGTGGTCTGTGGGGTCTCAGAGCAGACCACCTGCCAGGAAGTGGTCATCGCACTAGCCCAAGCAATAGACTGGCCGCTTTGTGCTTGTGCAGCGGCTTCGGGAGAAGGAGCGGCAGTTGCTGCCACAAGAGTGTCCAGTGGGCGCCCAGGCCACCTGCGGACAGTTTGCCAGCGATGTCCAGTTTGTCCTGAGG...	1,679	true	293
ENST00000570899.1	ENST00000570899	649	NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL ...	649	CTGGTCTCCCCGCCGCTCCCCGGGGGAGGGGAGCGGCTTGGTGCGCCTGCGCCAGCCTGTGGCTTTCTGGGAATCAAAGTTCCGGAGGTTCATGCGGTCCCTTTTCCGCTGTTCCCGGACGGACTACAAAACCCTTGATCCACCTCCGACCCTTAAGCCAGAGACTCAGCCACCAGAGAAACGGCGGAGAACAATTGAGGATTTCAACAAATTCTGCAGTTTTGTTTTGGCATATGCTGGTTACATTCCCCCTAGCAAAGAGGAAAGTGACTGGCCAGCCTCTGGCTCCAGCTCTCCATTGCGAGGAGAGAGTGCGGCCG...	649	true	293
ENST00000556831.5	ENST00000556831	729	NULL NULL NULL NULL NULL 0.147 0.058 0.177 0.326 0.236 0.116 0.444 1.0 0.653 0.624 0.534 1.0 0.713 0.205 0.505 0.084 0.114 0.354 0.144 0.0 0.083 0.143 0.204 0.083 0.173 0.415 0.445 0.778 0.506 0.536 0.445 0.809 0.958 0.9 0.445 0.354 0.84 0.506 0.233 0.261 0.443 0.382 0.292 0.08 0.799 0.379 0.709 0.349 0.499 0.315 0.375...	729	CCTCAGCAGCGAGAGGTGCTGCGGCGCTGCGTAGAAGTATCAATCAGCCGGTTGCTTTTGTGAGAAGAATTCCTTGGACTGCGGCGTCGAGTCAGCTGAAAGAACACTTTGCACAGTTCGGCCATGTCAGAAGGTGCATTTTACCTTTTGACAAGGAGACTGGCTTTCACAGAGGTTTGGGTTGGGTTCAGTTTTCTTCAGAAGAAGGACTTCGGAATGCACTACAACAGGAAAATCATATTATAGATGGAGTAAAGGTAAATTTATTTCTATGCCAGATACATACATGATATACATGTAGGTACTATTTAATTATGTAT...	729	true	293
ENST00000532881.5	ENST00000532881	2,587	NULL NULL NULL NULL NULL 0.0 0.419 0.502 0.084 0.0 0.583 0.916 0.583 0.167 0.333 0.829 0.663 0.874 0.947 0.249 0.0 0.739 0.574 0.908 0.328 0.487 0.0 0.081 0.0 0.0 0.08 0.161 0.241 0.161 0.0 0.0 0.557 0.477 0.159 0.398 0.079 0.236 1.0 0.394 0.236 0.623 0.389 0.467 0.234 0.389 0.77 0.385 0.693 0.616 0.539 0.531 0.38 0.0 ...	2,587	ATGGCCCTGGTCACAGTGAGCCGTTCGCCCCCGGGCAGCGGCGCCTCCACGCCCGTGGGGCCCTGGGACCAGGCGGTCCAGCGAAGGAGTCGACTCCAGCGAAGGCAGAGCTTTGCGGTGCTCCGTGGGGCTGTCCTGGGACTGCAGGATGGAGGGGACAATGATGATGCAGCAGAGGCCAGTTCTGAGCCAACAGAGAAGGCCCCGAGTGAGGAGGAGCTCCACGGGGACCAGACAGACTTCGGGCAAGGATCCCAGAGTCCCCAGAAGCAGGAGGAGCAGAGGCAGCACCTGCACCTCATGGTACAGCTGCTGAGGCC...	2,587	true	293
ENST00000625998.2	ENST00000625998	5,102	NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL ...	5,102	CCAAGCTGGCGGCGCAGTGTTGAGTTTACTTGGGCGCGACTGGCTTTATTGTAGGTCCCCATGAGCTGGTGGGGGCTGTAGGGGTAACCAGGCAGGGCGTCTGGCGCTGTTGGGGCTGCGTTTTTCCGGAGTCCCCCTATGCGAGGCCGTGCCCCTCTTCGCCCGGCTCCTGGTGCTCCCCAGCCGCCGGCCCGCTCCCGGAAGCTGCAGCAGCTGGTAACAAAGAGCCTGCCGGGCCGCCTGCTGCCGGGGCCGAGGTATCCAGGAGTCGGGCGGAGCGGCTGGGGATGAGCGCGAGCCGGACCATGCGTCCGGGTTCG...	5,102	true	293
ENST00000592099.5	ENST00000592099	4,766	NULL NULL NULL NULL NULL 0.558 0.093 0.559 0.28 0.093 0.186 0.0 0.187 0.187 0.28 0.28 0.0 0.0 0.281 0.281 0.562 0.749 0.376 0.376 0.47 0.282 0.0 0.094 0.0 0.094 0.0 0.094 0.094 0.472 0.377 0.189 0.189 0.0 0.094 0.094 0.282 0.0 0.0 0.282 0.47 0.188 0.282 0.469 0.375 1.0 0.657 0.375 0.563 0.469 0.094 0.563 0.375 0.187 0....	4,766	GAGATCGGAGGTCGCTGCCAAGCATGGCGCCCACCTGGGGCCCTGGCATGGTGTCTGTGGTTGGTCCCATGGGCCTCCTTGTGGTCCTGCTCGTTGGAGGCTGTGCAGCAGAAGAGCCCCCCAGGTTTATCAAAGAACCCAAGGACCAGATCGGCGTGTCGGGGGGTGTGGCCTCTTTCGTGTGTCAGGCCACGGGTGACCCCAAGCCACGAGTGACCTGGAACAAGAAGGGCAAGAAGGTCAACTCTCAGCGCTTTGAGACGATTGAGTTTGATGAGAGTGCAGGGGCAGTGCTGAGGATCCAGCCGCTGAGGACACCG...	4,766	true	293
ENST00000432673.1	ENST00000432673	917	NULL NULL NULL NULL NULL 0.943 1.0 1.0 1.0 1.0 0.191 0.064 0.064 0.192 1.0 0.831 0.193 0.0 0.707 0.514 0.064 0.065 0.0 0.065 0.0 0.065 0.129 0.84 0.0 0.0 0.0 0.065 0.129 0.065 0.129 0.323 0.064 0.128 0.577 0.257 0.128 0.064 0.191 0.318 1.0 0.191 0.99 0.819 1.0 0.876 0.126 0.313 0.0 0.0 0.125 0.375 0.31 0.124 0.248 0.43...	917	CGGTGCGGTGGCCCAGCGCGGCCGCCTGGCCCTCGAGCTCGCCGAAGATGTCCCCGGCGCAGCGCGACAGGGTTGTTATGAGGCTCAAAGGAACGGCTGCTGTGAAAAAACATGCTTTGCAATTTATGAAGCACTGGATAAACATCAGGAACGGTATAAAAGCATGCTGCTTACTCAAGAAATACTAGTTGAGTGCCTGTGTGTTGGGCACTGGCTAGAGATAAGGGTCTCCTATGGACAGAAGTGCGGGCAAGGAGCTTTGTTCCTCCCCGATGTCACCCTCCCACAGCCCACTTGCTAGCAGGCAAGAGAGGGGTGGA...	917	true	293
ENST00000583693.5	ENST00000583693	3,976	NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL ...	3,976	CCGTCTCCATCCCCTCCCTTGCTGGCCAGCCAGTTGATAAACATTGAATTTGGAAGATGCCTTGGGATGGAGGAGGACCAGTGCCCAGGCCTGCAGCCCACCCTCCCGCTGGGAGGCCCCTGAGAGCACTGGGGTGCTGCTGCCCTGTTTCTGGGGACGCTTGGCTTCCCTACCAGCCACCGTCTCCTGCCCTCCATCAGCTCGGCTCTAGCCTCGGGGCCTCTCGGGGTGGTGTCCCCGGTGACGTGCCTGCCTGCCTGCCTGCCGTCAGAGAGCTGGCGGGGCTGAGGGAAGGAAGCCTGCCTCCCTGGCAGGCAAGC...	3,976	true	293
ENST00000563612.1	ENST00000563612	877	NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL ...	877	GAAGTGGGCCTCGCTCTCCCGGGTTAGCAGCCGTAGCCAGATCCGTTGAAAGGAGTGCAGAGAGGTCTCATTGCGCTCCCGAACAGACCTGACGTAGATCCGAAGTGGCCCGCGCCATCTCAACTATGAGGGGACACCCGTAGGCGGCGGGAGAGGGACGCCGCGAGGAGCCAATAAAGCTCCGCAACCGGAAGTGTCTTCTGGGAGGGGTCGTACCCGGAAGTGTGGCACCTCCCGGGCCGCACCCGGAAGTGTGATGCCACCGCCGCTACGGGGAAGTAATGGTATCCGGCCAATTGAGATTCGGAGTTAAAACAGGT...	877	true	293
ENST00000594989.5	ENST00000594989	649	NULL NULL NULL NULL NULL 0.035 0.159 0.455 0.352 0.455 0.998 0.999 0.341 0.232 0.071 0.475 0.219 0.255 0.263 0.159 0.309 0.124 0.009 0.029 0.02 0.097 0.171 0.542 0.999 0.766 0.631 0.224 0.536 0.311 0.463 0.185 0.698 0.118 0.006 0.048 0.41 0.997 0.728 0.38 1.0 0.083 0.192 0.196 0.035 0.041 0.019 0.177 0.292 0.443 0.436 ...	649	CCCAGCCAGCAAGCCCACGCCGGTGCAGGACGTACAGGGCGACGGGCGCTGGATGTCCCTGCACCATCGGTTCGTGGCTGACAGCAAAGATAAGGAACCCGAAGTCGTCTTCATCGGGGACTCCTTGGTCCAGCTCATGCACCAGTGCGAGATCTGGCGCGAGCTCTTCTCTCCTCTGCATGCACTTAACTTTGGCATTGGTGGTGACGGCACACAGCATGTACTGTGGCGGCTGGAGAATGGGGAGCTGGAACACATCCGGCCCAAGATTGTGGTGGTCTGGGTGGGCACCAACAACCACGGACACACAGCAGAGCAGG...	649	true	293

End of preview.

configs:

config_name: default data_files:
- split: train path: Train.csv
- split: test path: Test.csv
- split: validation path: Val.csv

Downloads last month: 4

Total file size:

2.53 GB