TerminatorJ/xenium_25_lung_dataset_update4

Expression sequence	Split string	Cell_id string	Gene sequence	Cell_Ids string	Ranked_Gene_Names sequence	Full_Tokens sequence	Gene_Gene_Matrix sequence	Annotations string	Sample_Names string	Normalized_Exp sequence	pct_nucleus sequence	Transcript_Number sequence	compound_key string	Niche_Annotations string
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train

aaaabokj-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabokj-1

[ "HLA-DRA", "JCHAIN", "STAT1", "VIM", "MS4A1", "CD79A", "CD44", "HIF1A", "XBP1", "ITM2C", "HYOU1", "SPCS2", "SLC2A1", "HLA-DQA1", "LUM", "GPR183", "CST3", "PDIA4", "PTGDS", "ERLEC1", "PDIA3", "PIM2", "PTPRC", "ATF4", "SEC11C", "CXCR4", "DCN", "CTHRC1", "SOD2", ...

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B cells

VUILD107MF

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VUILD107MF_aaaabokj-1

T2

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train

aaaabpfm-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabpfm-1

[ "JCHAIN", "PTGDS", "VIM", "CCN2", "COL3A1", "SOD2", "LUM", "TRAC", "COL1A2", "HYOU1", "STAT1", "HIST1H1C", "CD3D", "CD44", "FN1", "CD3E", "RHOA", "PCNA", "EHMT1", "ERLEC1", "PDIA6", "SSR3", "PDIA3", "HIF1A", "SPARCL1", "PTPRC", "FAS", "DCN", "CXCR4", "CD52",...

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T-cells

VUILD107MF

[ 1, 0.85, 0.85, 0.7, 0.7, 0.5499999999999999, 0.4, 0.4, 0.4, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, ...

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VUILD107MF_aaaabpfm-1

T2

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train

aaaabpgd-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabpgd-1

[ "VIM", "HLA-DRA", "COL1A2", "HLA-DQA1", "PTGDS", "MS4A1", "LUM", "BANK1", "JCHAIN", "CCL18", "CD52", "COL3A1", "CCL2", "PDIA3", "ATP2A3", "FN1", "ITGAV", "HIF1A", "OAS2", "STAT1", "SPRY2", "CD44", "HYOU1", "CD68", "CD79A", "HLA-DQB1", "HIST1H1C", "RTKN2", "RHO...

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B cells

VUILD107MF

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VUILD107MF_aaaabpgd-1

T2

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train

aaaabojm-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabojm-1

[ "HLA-DRA", "MS4A7", "JCHAIN", "CST3", "CCL18", "LYZ", "HLA-DQA1", "RNASE1", "STAT1", "FCGR3A", "FCER1G", "PDIA3", "VIM", "IFIT3", "ATF4", "CD44", "COL1A2", "COL3A1", "MS4A1", "CD14", "ATG7", "PDIA4", "CD52", "LUM", "HLA-DQB1", "GPR183", "SPRY2", "SELENOS", "CO...

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Macrophages

VUILD107MF

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VUILD107MF_aaaabojm-1

T5

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train

aaaabkng-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabkng-1

[ "COL3A1", "COL1A1", "VIM", "LUM", "SFRP2", "MEG3", "PTGDS", "SPARCL1", "CCN2", "SNAI2", "COL1A2", "ITGB1", "SOD2", "CD79A", "DCN", "PCNA", "PIM2", "ISG20", "YAP1", "KLRB1", "CD44", "HLA-DRA", "SFRP4", "LTB", "SELENOS", "SCGB3A2", "GSR", "GPR183", "FAS", "CTN...

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Fibroblasts

VUILD107MF

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VUILD107MF_aaaabkng-1

T9

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train

aaaabojj-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabojj-1

[ "XBP1", "JCHAIN", "VIM", "CCN2", "FN1", "COL1A2", "LUM", "ITM2C", "COL1A1", "CD79A", "PTGDS", "PRDX4", "STAT1", "SPRY2", "BCL2L11", "SEC11C", "UBE2J1", "CXCL14", "HERPUD1", "ATF4", "MANF", "HLA-DRA", "HAS2", "PDIA6", "IFIT1", "SPCS3", "SPARCL1", "CD44", "SFRP2...

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Plasma

VUILD107MF

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VUILD107MF_aaaabojj-1

T1

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train

aaaabodo-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabodo-1

[ "PTGDS", "LUM", "FN1", "CCN2", "VIM", "XBP1", "COL3A1", "SOD2", "COL1A2", "MEG3", "JCHAIN", "ITGB1", "ATF4", "COL1A1", "SPCS2", "CST3", "ITM2C", "SPARCL1", "CD4", "CD44", "CD28", "HERPUD1", "CD2", "HIF1A", "CD68", "SEC11C", "GZMA", "GSR", "SLC1A3", "MS4A7", ...

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Fibroblasts

VUILD107MF

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VUILD107MF_aaaabodo-1

T9

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train

aaaabinl-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabinl-1

[ "STAT1", "HLA-DRA", "HLA-DQA1", "CD44", "CXCL13", "TRAC", "MS4A1", "HIST1H1C", "PKM", "BANK1", "HIF1A", "TGFB1", "LTB", "ITGB1", "SSR3", "SPCS3", "IRF1", "CD68", "CD69", "CD8A", "COL1A1", "RHOA", "CTNNB1", "LMAN1", "IFIT1", "CXCL9", "ICAM1", "PTPRC", "DIRAS3",...

[ 9, 7, 3, 6, 542, 263, 261, 100, 157, 585, 380, 260, 438, 54, 258, 556, 350, 306, 541, 532, 296, 102, 103, 110, 134, 468, 151, 346, 278, 162, 275, 456, 176, 553, 428, 272, 254, 353, 262, 163, 312, 46, 619, 596, 602, 603, 50, ...

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B cells

VUILD107MF

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VUILD107MF_aaaabinl-1

T2

[ [ 0, 0, 0, 0, 0, 97.0873794555664, 0, 0, 0, 0, 0, 0, 0, 97.0873794555664, 0, 0, 0, 0, 0, 0, 194.1747589111328, 97.0873794555664, 97.0873794555664, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 97....

train

aaaabglb-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabglb-1

[ "HLA-DRA", "VIM", "MS4A1", "PTGDS", "LTB", "HERPUD1", "CXCR4", "STAT1", "PTPRC", "CD44", "SOD2", "GPR183", "CD69", "SMAD4", "IFIT1", "TGFB1", "CD79A", "BANK1", "CD1C", "OAS2", "DCN", "COL1A1", "PIM2", "PRDX4", "PECAM1", "EHMT1", "CD3E", "SPCS3", "HLA-DQA1", ...

[ 9, 7, 3, 6, 263, 603, 380, 454, 350, 254, 163, 542, 456, 100, 526, 242, 103, 519, 278, 556, 105, 54, 84, 410, 169, 134, 437, 450, 431, 184, 95, 532, 261, 212, 444, 219, 135, 473, 258, 162, 157, 502, 250, 85, 136, 102, 101, ...

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B cells

VUILD107MF

[ 1, 0.85, 0.7, 0.5499999999999999, 0.5499999999999999, 0.5499999999999999, 0.5499999999999999, 0.4, 0.4, 0.4, 0.4, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0....

[ -1, -1, -1, -1, -1, 0, -1, -1, -1, -1, -1, -1, -1, 0, -1, -1, -1, -1, -1, -1, 1, 1, 0, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 1, -1, -1, 0, -1, -1, -1, -1, 0, 1, -1, 1, 0, -1, -1, -1, -1, -1, -1, 1, -1, -1, ...

[ 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 2, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 1, 0, 2, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 3, 1, 1, 2, 2, 0, 0, 0, 0...

VUILD107MF_aaaabglb-1

T2

[ [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 306.1224365234375, 0, 102.04081726074219, 0, 0, 0, 204.08163452148438, 0, 0, 0, 102.04081726074219, 0, 0, 0, 0, 0, 0, 0, 204.08163452148438,...

train

aaaabgjc-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabgjc-1

[ "VIM", "PTGDS", "IFIT3", "CD79A", "HLA-DRA", "SMAD4", "ATF4", "LYZ", "CXCR4", "LUM", "MS4A1", "CD44", "ISG20", "SLC1A3", "CCL18", "TNFRSF13C", "DCN", "PTPRC", "STAT1", "BANK1", "JCHAIN", "OAS3", "OAS2", "PDIA3", "SPARCL1", "UBE2J1", "LTB", "CD52", "CD68", "C...

[ 9, 7, 3, 6, 603, 454, 280, 105, 263, 519, 46, 357, 163, 353, 380, 100, 300, 513, 71, 574, 169, 456, 542, 54, 310, 411, 410, 426, 530, 594, 350, 101, 102, 103, 389, 109, 296, 514, 428, 502, 437, 334, 135, 136, 487, 151, 431, ...

[ [ 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,...

B cells

VUILD107MF

[ 1, 0.85, 0.7, 0.5499999999999999, 0.5499999999999999, 0.4, 0.4, 0.4, 0.4, 0.4, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, ...

[ -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 0, -1, 1, -1, -1, -1, 0, -1, -1, -1, 1, -1, -1, -1, -1, -1, -1, -1, 0.5, 1, -1, -1, -1, -1, -1, -1, 0, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1,...

[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 2, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 2, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 1, 1, 1, 4, 0, 1, 0, 0...

VUILD107MF_aaaabgjc-1

T2

[ [ 0, 0, 105.2631607055664, 0, 0, 0, 0, 0, 0, 0, 0, 210.5263214111328, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 105.2631607055664, 0, 0, 0, 210.5263214111328, 0, 0, 0, 0, 0, 0, 0, 0, 0...

train

aaaabimo-1

[ "ABCC2", "ACKR1", "ACTA2", "AGER", "AGR3", "AIF1", "AKR1B10", "AKR1C1", "AKR1C2", "ANKRD28", "APLN", "APLNR", "ASCL1", "ATF3", "ATF4", "ATF6", "ATG7", "ATP2A3", "AXIN2", "AXL", "BANK1", "BAX", "BCL2", "BCL2L1", "BCL2L11", "BMP4", "BMPR2", "BPIFA1", "C1QC", "...

aaaabimo-1

[ "TRAC", "VIM", "CD44", "COL3A1", "PTPRC", "HLA-DRA", "CD3D", "CXCR4", "HMGA1", "PDIA3", "BMPR2", "STAT1", "COL1A2", "PKM", "APLNR", "SSR3", "CD68", "CD3G", "CD3E", "SPARCL1", "CD27", "SPCS3", "COL1A1", "CST3", "RHOA", "CXCL13", "RSPO3", "PPARG", "FAS", "NHSL...

[ 9, 7, 3, 6, 585, 603, 100, 136, 456, 263, 94, 163, 264, 426, 61, 542, 135, 438, 35, 541, 102, 96, 95, 530, 88, 532, 134, 147, 468, 157, 472, 448, 206, 401, 390, 254, 260, 261, 357, 272, 291, 329, 150, 79, 621, 14, 57, 577 ...

[ [ 0, 1, 1, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ], ...

T-cells

VUILD107MF

[ 1, 1, 0.8714285714285716, 0.7428571428571429, 0.6142857142857143, 0.6142857142857143, 0.48571428571428577, 0.3571428571428572, 0.3571428571428572, 0.3571428571428572, 0.2285714285714286, 0.2285714285714286, 0.2285714285714286, 0.2285714285714286, 0.2285714285714286, 0.2285714285714286,...

[ -1, -1, 1, -1, -1, -1, -1, -1, -1, -1, -1, 0, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 0, -1, -1, -1, 0.5, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 0, -1, -1, -1, -1, -1, -1, 1, -1, -1, -1, 0.75, 1, 1...

[ 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 4, 1, 1, 0, 8, 0, 1, 0, 0, 0, 0, 0, 0...

VUILD107MF_aaaabimo-1

T2