Source stringclasses 1
value | Date int32 2.01k 2.01k | Text stringlengths 3 15.9M | Token_count int32 1 2.44M |
|---|---|---|---|
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
import javax.swing.AbstractButton;
import knowevo.myvizster.Vizster;
/**
* ToggleHighlightPassThroughFocus
*
* @version 1.0
* @author <a href="http://jheer.org">Jeffrey Heer</a> prefuse(AT)jheer.... | 179 |
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
/**
* Exits the current application
*
* @version 1.0
* @author <a href="http://jheer.org">Jeffrey Heer</a> vizster(AT)jheer.org
*/
public class ExitAction extends AbstractAction {
public void... | 102 |
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
import javax.swing.JDialog;
import javax.swing.JPanel;
import edu.berkeley.guir.prefusex.force.ForcePanel;
import knowevo.myvizster.Vizster;
/**
* Brings up a dialog allowing users to configure the f... | 265 |
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
import knowevo.myvizster.Vizster;
import edu.berkeley.guir.prefuse.Display;
/**
* Turns on the display of a debugging info string on the Vizster display.
*
* @version 1.0
* @author <a href="http://... | 201 |
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
import knowevo.myvizster.Vizster;
/**
*
* @version 1.0
* @author <a href="http://jheer.org">Jeffrey Heer</a> vizster(AT)jheer.org</a>
*/
public class ToggleAnimationAction extends AbstractAction {... | 171 |
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
import knowevo.myvizster.Vizster;
import knowevo.myvizster.VizsterDBLoader;
import knowevo.myvizster.ui.LoginDialog;
/**
* Attempts a connection to a database
*
* @version 1.0
* @author <a href="h... | 422 |
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
import javax.swing.JToggleButton;
import knowevo.myvizster.Vizster;
import knowevo.myvizster.action.VizsterXRayColorFunction;
/**
* Updates which attribute is visualized in the attribute comparison mode... | 411 |
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
import javax.swing.AbstractButton;
import knowevo.myvizster.Vizster;
/**
* ToggleLinkHighlighting
*
* @version 1.0
* @author <a href="http://jheer.org">Jeffrey Heer</a> prefuse(AT)jheer.org
*/
... | 193 |
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
import knowevo.myvizster.Vizster;
/**
* FitToViewAction
*
* @version 1.0
* @author <a href="http://jheer.org">Jeffrey Heer</a> prefuse(AT)jheer.org
*/
public class FitToViewAction extends Abstr... | 173 |
github-java-corpus | 2,012 | package knowevo.myvizster.util;
import java.awt.event.ActionEvent;
import java.io.File;
import javax.swing.AbstractAction;
import javax.swing.AbstractButton;
import javax.swing.JFileChooser;
import knowevo.myvizster.Vizster;
import knowevo.myvizster.ui.VizsterMenuBar;
/**
*
* @version 1.0
* @auth... | 337 |
github-java-corpus | 2,012 | package knowevo.myvizster.render;
import java.awt.Shape;
import java.awt.geom.Rectangle2D;
import java.awt.geom.RoundRectangle2D;
import knowevo.myvizster.DecoratorItem;
import knowevo.myvizster.Vizster;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.berkeley.guir.prefuse.render.ShapeRenderer;
/*... | 471 |
github-java-corpus | 2,012 | package knowevo.myvizster.render;
import knowevo.myvizster.VizsterLib;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.berkeley.guir.prefuse.render.DefaultEdgeRenderer;
/**
* Vizster edge renderer, toggles edge width based on highlighted status
*
* @version 1.0
* @author <a href="http://jheer.or... | 197 |
github-java-corpus | 2,012 | package knowevo.myvizster.render;
import knowevo.myvizster.DecoratorItem;
import knowevo.myvizster.Vizster;
import edu.berkeley.guir.prefuse.AggregateItem;
import edu.berkeley.guir.prefuse.Display;
import edu.berkeley.guir.prefuse.EdgeItem;
import edu.berkeley.guir.prefuse.NodeItem;
import edu.berkeley.guir.pr... | 922 |
github-java-corpus | 2,012 | package knowevo.myvizster.render;
import java.awt.Image;
import java.awt.Toolkit;
import java.awt.image.FilteredImageSource;
import java.awt.image.ImageProducer;
import java.awt.image.RGBImageFilter;
import edu.berkeley.guir.prefuse.render.ImageFactory;
/**
* An image factory subclass, which upon loading... | 662 |
github-java-corpus | 2,012 | package knowevo.myvizster.render;
import java.awt.BasicStroke;
import java.awt.Image;
import knowevo.myvizster.Vizster;
import knowevo.myvizster.VizsterLib;
import edu.berkeley.guir.prefuse.FocusManager;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.b... | 917 |
github-java-corpus | 2,012 | package knowevo.myvizster.ui;
import java.awt.Color;
import java.awt.Dimension;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import javax.swing.JButton;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JSlider;
import javax.swing.event.ChangeEvent;
impor... | 899 |
github-java-corpus | 2,012 | package knowevo.myvizster.ui;
import java.awt.Color;
import java.awt.Dimension;
import java.awt.Font;
import java.awt.Graphics;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import java.awt.Point;
import java.awt.event.MouseAdapter;
import java.awt.event.MouseEvent;
import java.awt.even... | 3,027 |
github-java-corpus | 2,012 | package knowevo.myvizster.ui;
import java.awt.Color;
import java.awt.Dimension;
import java.awt.Toolkit;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.net.URL;
import java.util.Properties;
import javax.... | 1,581 |
github-java-corpus | 2,012 | package knowevo.myvizster.ui;
import java.awt.BorderLayout;
import java.awt.Container;
import java.awt.Dimension;
import java.awt.event.ActionEvent;
import java.io.IOException;
import javax.swing.AbstractAction;
import javax.swing.Box;
import javax.swing.BoxLayout;
import javax.swing.JButton;
import javax... | 1,447 |
github-java-corpus | 2,012 | package knowevo.myvizster.ui;
import javax.swing.Action;
import javax.swing.JCheckBoxMenuItem;
import javax.swing.JMenu;
import javax.swing.JMenuBar;
import javax.swing.JMenuItem;
import javax.swing.KeyStroke;
import knowevo.myvizster.Vizster;
import knowevo.myvizster.util.ColorMapAction;
import knowevo.my... | 1,644 |
github-java-corpus | 2,012 | package knowevo.myvizster.ui;
import java.awt.Component;
import java.awt.Font;
import java.awt.FontMetrics;
import java.awt.Graphics2D;
import javax.swing.JPanel;
import edu.berkeley.guir.prefuse.render.Renderer;
import edu.berkeley.guir.prefuse.util.ColorMap;
/**
* Legend
*
* @version 1.0
* @a... | 586 |
github-java-corpus | 2,012 | package knowevo.myvizster;
import java.awt.Color;
import java.awt.Font;
import java.awt.FontMetrics;
import java.awt.Graphics2D;
import java.awt.RenderingHints;
import java.awt.geom.AffineTransform;
import knowevo.myvizster.ui.Legend;
import edu.berkeley.guir.prefuse.Display;
import edu.berkeley.guir.prefu... | 524 |
github-java-corpus | 2,012 | package knowevo.myvizster;
import java.util.Comparator;
import edu.berkeley.guir.prefuse.AggregateItem;
import edu.berkeley.guir.prefuse.EdgeItem;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.berkeley.guir.prefuse.NodeItem;
/**
* Comparator that sorts items based on type and focus status.
*
... | 907 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.util.Iterator;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.berkeley.guir.prefuse.action.AbstractAction;
/**
* BorderToggleAction
*
* @version 1.0
* @author <a href="http://jheer.org">Jeffrey Hee... | 303 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.action.AbstractAction;
/**
* NullAction
*
* @version 1.0
* @author <a href="http://jheer.org">Jeffrey Heer</a> prefuse(AT)jheer.org
*/
public class NullAction extends AbstractAction {
... | 137 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.util.Iterator;
import knowevo.myvizster.VizsterLib;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.berkeley.guir.prefuse.action.AbstractAction;
/**
* ClearHighlightAction
*
* @version 1.0
* @aut... | 350 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import edu.berkeley.guir.prefuse.EdgeItem;
import edu.berkeley.guir.prefuse.NodeItem;
import edu.berkeley.guir.prefusex.force.DragForce;
import edu.berkeley.guir.prefusex.force.ForceSimulator;
import edu.berkeley.guir.prefusex.force.NBodyForce;
import edu.berkeley.guir.prefusex... | 1,097 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.util.Iterator;
import knowevo.myvizster.Vizster;
import edu.berkeley.guir.prefuse.FocusManager;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.NodeItem;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.berkeley.guir.prefuse... | 384 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.util.Iterator;
import prefusex.community.CommunitySet;
import edu.berkeley.guir.prefuse.EdgeItem;
import edu.berkeley.guir.prefuse.FocusManager;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.NodeItem;
import edu.berkeley.guir.pre... | 442 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.awt.Color;
import java.awt.Paint;
import java.sql.Date;
import knowevo.myvizster.DecoratorItem;
import knowevo.myvizster.VizsterLib;
import edu.berkeley.guir.prefuse.AggregateItem;
import edu.berkeley.guir.prefuse.EdgeItem;
import edu.berkeley.guir.prefuse.Visua... | 2,121 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.util.Iterator;
import edu.berkeley.guir.prefuse.Display;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.berkeley.guir.prefuse.action.assignment.SizeFunction;
/**
* VizsterSizeFunction
*
* @version 1... | 435 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.awt.Font;
import knowevo.myvizster.VizsterLib;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.berkeley.guir.prefuse.action.assignment.FontFunction;
import edu.berkeley.guir.prefuse.util.FontLib;
/**
* VizsterFontFunction
*
* @version 1.0
* @... | 327 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.Iterator;
import knowevo.myvizster.Vizster;
import knowevo.myvizster.VizsterLib;
import edu.berkeley.guir.prefuse.EdgeItem;
import edu.berkeley.guir.prefuse.FocusManager;
import edu.berkeley.guir.prefuse... | 1,441 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.awt.Paint;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.Set;
import prefusex.community.CommunitySet;
import edu.berkeley.guir.prefuse.AggregateItem;
import edu.berkeley.guir.prefuse.FocusManager;
import edu.berkeley.guir.prefuse.ItemRe... | 709 |
github-java-corpus | 2,012 | package knowevo.myvizster.action.linkage;
import java.awt.geom.Rectangle2D;
import java.util.Iterator;
import knowevo.myvizster.Vizster;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.NodeItem;
import edu.berkeley.guir.prefuse.action.assignment.Layout;
import edu.berkeley.gui... | 418 |
github-java-corpus | 2,012 | package knowevo.myvizster.action.linkage;
import java.util.Iterator;
import knowevo.myvizster.Vizster;
import edu.berkeley.guir.prefuse.FocusManager;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.NodeItem;
import edu.berkeley.guir.prefuse.action.assignment.Layout;
import edu... | 340 |
github-java-corpus | 2,012 | package knowevo.myvizster.action.linkage;
import java.awt.geom.Point2D;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import knowevo.myvizster.Vizster;
import knowevo.myvizster.VizsterLib;
import edu.berkeley.guir.prefuse.EdgeItem;
import edu.ber... | 1,181 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import prefusex.community.CommunitySet;
import edu.berkeley.guir.prefuse.FocusManager;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.action.AbstractAction;
public class CommunityConstructor extends AbstractAction {
public static final int ... | 275 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.awt.geom.Rectangle2D;
import java.util.Iterator;
import java.util.Set;
import prefusex.community.CommunitySet;
import edu.berkeley.guir.prefuse.AggregateItem;
import edu.berkeley.guir.prefuse.FocusManager;
import edu.berkeley.guir.prefuse.ItemRegistry;
import ed... | 876 |
github-java-corpus | 2,012 | package knowevo.myvizster.action;
import java.awt.Color;
import java.awt.Paint;
import prefusex.community.CommunitySet;
import knowevo.myvizster.DecoratorItem;
import knowevo.myvizster.Vizster;
import knowevo.myvizster.VizsterLib;
import edu.berkeley.guir.prefuse.AggregateItem;
import edu.berkeley.guir.pref... | 1,738 |
github-java-corpus | 2,012 | package knowevo.myvizster;
import java.sql.PreparedStatement;
import java.sql.ResultSet;
import java.sql.SQLException;
import java.sql.Statement;
import edu.berkeley.guir.prefuse.ItemRegistry;
import edu.berkeley.guir.prefuse.graph.Node;
import edu.berkeley.guir.prefuse.graph.external.DatabaseLoader;
import... | 942 |
github-java-corpus | 2,012 | package knowevo.myvizster;
import java.awt.Component;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.util.Timer;
import javax.swing.JOptionPane;
import javax.swing.UIManager;
import edu.berkeley.guir.prefuse.VisualItem;
import edu.berkeley.guir.prefuse.graph.Graph;
import e... | 873 |
github-java-corpus | 2,012 | /*
@author = Sasho Gabrovski
@editor = emacs -nw
*/
package gravedigger;
import java.util.List;
import java.util.ArrayList;
import java.util.Iterator;
import java.io.FileReader;
import java.io.BufferedReader;
import java.io.IOException;
import java.util.regex.Pattern;
import java.util.regex.Matcher;
public cl... | 1,379 |
github-java-corpus | 2,012 | /*
@author = Sasho Gabrovski
@editor = emacs -nw
*/
package gravedigger;
import java.util.List;
import java.util.ArrayList;
import java.util.Set;
import java.util.HashSet;
import java.util.Iterator;
import java.io.FileWriter;
import java.io.BufferedWriter;
import java.io.IOException;
import java.io.ObjectOutput;... | 996 |
github-java-corpus | 2,012 | /*
@author = Sasho Gabrovski
@editor = emacs -nw
*/
package gravedigger;
import java.util.Set;
import java.io.FileReader;
import java.io.BufferedReader;
import java.io.FileWriter;
import java.io.BufferedWriter;
public class PeopleFilter {
public static void filterPeople(String people_in, String people... | 181 |
github-java-corpus | 2,012 | /*
@author = Sasho Gabrovski
@editor = emacs -nw
*/
package gravedigger;
import java.io.FileWriter;
import java.io.BufferedWriter;
public class GraveDigger {
public static void main(String[] args) {
//XMLParser.DEBUG = true;
//XMLParser.DEBUG_LIMIT = 1000;
filterXml("people_arti... | 226 |
github-java-corpus | 2,012 | import static org.hamcrest.CoreMatchers.equalTo;
import static org.junit.Assert.assertThat;
import org.junit.Before;
import org.junit.Test;
public class TennisGameTest {
private TennisGame tennisGame;
@Before
public void setUp() {
tennisGame = new TennisGame();
}
@Test
public void whenPlayer1Wins_thenSc... | 475 |
github-java-corpus | 2,012 |
public class PlayerScore {
private int score;
public PlayerScore(int playerOneScore) {
score = playerOneScore;
}
public int getScore() {
return score;
}
void incrementScore() {
if (score == 15)
score = 30;
else if (score == 30)
score = 40;
else
score = 15;
}
@Override
public int has... | 201 |
github-java-corpus | 2,012 |
public class TennisGame {
private GameScore score = new GameScore(0, 0);
public GameScore getGameScore() {
return score;
}
public void playerOneWinsPoint() {
score.incrementPlayerOneScore();
}
public void playerTwoWinsPoint() {
score.incrementPlayerTwoScore();
}
public boolean hasPlayer2Won() {
r... | 84 |
github-java-corpus | 2,012 |
public class GameScore {
private final PlayerScore playerOneScore;
private final PlayerScore playerTwoScore;
public GameScore(int playerOneScore, int playerTwoScore) {
this.playerOneScore = new PlayerScore(playerOneScore);
this.playerTwoScore = new PlayerScore(playerTwoScore);
}
public boolean equals(Objec... | 157 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 2,722 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 3,485 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 900 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 9,893 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 3,562 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 1,830 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 42,015 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 8,514 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 11,352 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation, either ... | 920 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 15,684 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 2,038 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 4,690 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 4,450 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 3,417 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation, either ... | 2,104 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 4,643 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 3,792 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 655 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 1,055 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 2,655 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 1,357 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation, either ... | 2,745 |
github-java-corpus | 2,012 | import java.util.Arrays;
import java.util.Iterator;
/*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public ... | 9,425 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 25,864 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 3,672 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 9,316 |
github-java-corpus | 2,012 | import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.TreeMap;
public class APLUtil {
/**
* Get the sum of rotamers left
*
* @param numRotForRes
* @param prunedRotAtRes
* @return
*/
public long getNumberOfRota... | 2,562 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 1,038 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 1,838 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 556 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 11,922 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 1,965 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 632 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 464 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 1,284 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 2,969 |
github-java-corpus | 2,012 | import java.util.concurrent.PriorityBlockingQueue;
/*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public Li... | 1,361 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 24,307 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 1,462 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 11,361 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 605 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 72,449 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 784 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 7,665 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 17,167 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 3,972 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 9,267 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 57,897 |
github-java-corpus | 2,012 | /*
This file is part of OSPREY.
OSPREY Protein Redesign Software Version 2.0
Copyright (C) 2001-2012 Bruce Donald Lab, Duke University
OSPREY is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation,... | 525 |
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