README.md

metadata

license: cc-by-nc-sa-4.0
tags:
  - genomics
  - dna
  - benchmark
pretty_name: GLMap Probe Panels

GLMap Probe Panels

Prebuilt DNA probe panels for GLMap — a training-free framework for profiling genomic language models by their likelihood responses over a fixed panel of DNA sequences.

Files

File	Description
main_panel.parquet	10,000-probe biological panel (14 functional elements × 4 categories)
panel_manifest.json	Per-element / per-dataset counts and sampling seeds
panel_summary.md	Human-readable panel composition summary

Usage

import glmap
panel = glmap.load_panel()   # auto-downloads from this dataset if not local

Or directly:

import pandas as pd
from huggingface_hub import hf_hub_download
path = hf_hub_download("Tim419/GLMap-panels", "main_panel.parquet", repo_type="dataset")
panel = pd.read_parquet(path)

License

CC-BY-NC-SA-4.0. The panel was assembled from three upstream benchmarks:

• GUE (DNABERT-2) — Apache-2.0
• Plant Genomic Benchmark (ArgoNT) — CC-BY-NC-SA-4.0
• DNA Foundation Benchmark (DFB) — Apache-2.0

Because the panel contains 1,600 probes drawn from PGB, the combined artefact inherits PGB's CC-BY-NC-SA-4.0 license (ShareAlike). For non-commercial research use with attribution. Please cite all three upstream benchmarks plus the GLMap paper.