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<filename>ollama-python/ollama/_client.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # ollama-python/ollama/_types.py def __init__(self, error: str, status_code: int = -1): try: # try to parse content as JSON and extract 'error' # f...
for message in messages or []: if not isinstance(message, dict): raise TypeError('messages must be a list of Message or dict-like objects') if not (role := message.get('role')) or role not in ['system', 'user', 'assistant']: raise RequestError('messages must contain a role and it must be one...
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>ollama-python/ollama/_client.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # ollama-python/ollama/_types.py def __init__(self, error: str, status_code: int = -1): try: # try to parse content as JSON and extract 'error' # f...
async for line in r.aiter_lines(): partial = json.loads(line) if e := partial.get('error'): raise ResponseError(e) yield partial
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>ollama-python/ollama/_client.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # ollama-python/ollama/_types.py def __init__(self, error: str, status_code: int = -1): try: # try to parse content as JSON and extract 'error' # f...
async for line in r.aiter_lines(): partial = json.loads(line) if e := partial.get('error'): raise ResponseError(e) yield partial
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>ollama-python/ollama/_client.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # ollama-python/ollama/_types.py def __init__(self, error: str, status_code: int = -1): try: # try to parse content as JSON and extract 'error' # f...
async def inner(): async with self._client.stream(method, url, **kwargs) as r: try: r.raise_for_status() except httpx.HTTPStatusError as e: e.response.read() raise ResponseError(e.response.text, e.response.status_code) from None async for line in r.aiter_line...
METHOD
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>ollama-python/ollama/_client.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # ollama-python/examples/async-chat-stream/main.py async def speak(speaker, content): if speaker: p = await asyncio.create_subprocess_exec(speaker, content) ...
async def upload_bytes(): with open(path, 'rb') as r: while True: chunk = r.read(32 * 1024) if not chunk: break yield chunk
METHOD
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>ollama-python/ollama/_client.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # ollama-python/examples/async-chat-stream/main.py async def speak(speaker, content): if speaker: p = await asyncio.create_subprocess_exec(speaker, content) ...
while True: chunk = r.read(32 * 1024) if not chunk: break yield chunk
WHILE
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>ollama-python/ollama/_client.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # ollama-python/examples/async-chat-stream/main.py async def speak(speaker, content): if speaker: p = await asyncio.create_subprocess_exec(speaker, content) ...
while True: chunk = r.read(32 * 1024) if not chunk: break sha256sum.update(chunk)
WHILE
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>ollama-python/ollama/_client.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # ollama-python/ollama/_types.py def __init__(self, error: str, status_code: int = -1): try: # try to parse content as JSON and extract 'error' # f...
while True: chunk = r.read(32 * 1024) if not chunk: break sha256sum.update(chunk)
WHILE
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/conv_filter_bank.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/utils/math.py def cartesian2polar(xs: np.ndarray, ys: np.ndarray, center_x: float, center_y: float) -> Tuple[np.ndarr...
"""Apply convolution to a given normalized iris image with the filter and probe schema. Args: img_filter (ImageFilter): filter used for convolution. probe_schema (ProbeSchema): probe schema used for convolution. normalization_output (NormalizedIris): Output of the normalizat...
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/geometry_refinement/contour_points_filter.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_refinement/contour_interpolation.py def run(self, polygons: GeometryPolygons) -> Geomet...
"""Perform polygon refinement by filtering out those iris/pupil polygons points which are to close to eyeball or noise. Args: polygons (GeometryPolygons): Polygons to refine. geometry_mask (NoiseMask): Geometry noise mask. Returns: GeometryPolygons: Refined geometry...
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/eye_properties_estimation/iris_bbox_calculator.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/validators/object_validators.py def __init__(self, min_maskcodes_size: int = 0) -> None: ...
"""Assign parameters. WARNING: Depending on wether `buffer` is a float or an int, behaviour differs. `buffer=2.0` => the iris size will be multiplied by 2., `buffer=2` => 2 pixels padding will be added. Args: buffer (Union[int, float, Tuple[Number, Number]], optional): Iris buffer ...
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def get_pixel_binary(image: np.ndarray, pixel_x: float, pixel_y: float) -> b...
"""Extract interpolation points coordinates. Args: image (np.ndarray): Original, not normalized image. pixel_x (float): Pixel x coordinate. pixel_y (float): Pixel y coordinate. Returns: Tuple[float, float, float, float]: Tuple with interpolation points c...
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/callbacks/pipeline_trace.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/dataclasses.py def pupil_diameter(self) -> float: """Return pupil diameter. Returns: float: p...
"""Return stored error. Returns: Optional[Exception]: error. """
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/validators/cross_object_validators.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_refinement/contour_points_filter.py def __init__(self, min_distance_to_noise_and_eyeball: floa...
"""Assign parameters. Args: min_distance_to_border (float, optional): Minimum allowed distance to image boundary. Defaults to 0.0 (Eye centers can be at the image border). """
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/callbacks/pipeline_trace.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/dataclasses.py def index_of(self, class_name: str) -> int: """Get class index based on its name. Args: ...
"""Get result_name result. Args: result_name (str): Result name. Raises: PipelineCallTraceStorageError: Raised if result_name is not found. Returns: Any: Result object. """
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/geometry_refinement/smoothing.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_estimation/linear_extrapolation.py def _estimate(self, vertices: np.ndarray, center_xy: Tuple[float...
"""Cut contour into arcs. Args: polygon (np.ndarray): Contour polygon. center_xy (Tuple[float, float]): Polygon's center. Returns: Tuple[List[np.ndarray], int]: Tuple with: (list of list of vertices, number of gaps detected in a contour). """
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/eye_properties_estimation/pupil_iris_property_calculator.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/eye_properties_estimation/eccentricity_offgaze_estimation.py def __init__( ...
"""Assign parameters. Args: min_pupil_diameter (float): minimum pupil diameter. Defaults to 1.0. min_iris_diameter (float): minimum iris diameter. Defaults to 150.0. callbacks (List[Callback]): callbacks list. Defaults to []. """
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/vectorization/contouring.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_refinement/contour_points_filter.py def __init__(self, min_distance_to_noise_and_eyeball: float = 0.005)...
"""Assign parameters. Args: contour_filters (List[Callable[[List[np.ndarray]], List[np.ndarray]]], optional): List of filter functions used to filter out noise in polygons. Defaults to [ContouringAlgorithm.filter_polygon_areas]. """
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/probe_schemas/regular_probe_schema.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/validators.py def are_all_positive(cls: type, v: Any, field: fields.ModelField) -> Any: """C...
phis = phis.flatten()
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/eye_properties_estimation/occlusion_calculator.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/validators/cross_object_validators.py def run(self, ir_image: IRImage, extrapolated_polygon...
pupil_mask = common.contour_to_mask(extrapolated_polygons.pupil_array, mask_shape=(img_w, img_h))
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/nonlinear_normalization.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/perspective_normalization.py def _normalize_roi( self, original_image:...
src_shape = src_points.shape[0:2]
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/utils/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/dataclasses.py def filled_iris_mask(self) -> np.ndarray: """Fill iris mask. Returns: np.ndarray: Iris mas...
width, height = mask_shape
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/eye_properties_estimation/bisectors_method.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_refinement/smoothing.py def _smooth_circular_shape(self, vertices: np.ndarray, center_...
mask = norms > min_distance_between_sector_points_in_px
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/probe_schemas/regular_probe_schema.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/validators.py def are_all_positive(cls: type, v: Any, field: fields.ModelField) -> Any: """C...
phi = np.linspace(0, 1, self.params.n_cols, endpoint=False)
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def get_pixel_binary(image: np.ndarray, pixel_x: float, pixel_y: float) -> b...
return xmin, ymin, xmax, ymax
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/image_filters/gabor_filters.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/iris_response/image_filters/image_filter_interface.py def compute_kernel_values(self) -> np.ndar...
correction_term_mean = np.mean(envelope, axis=-1)
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/io/validators.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/dataclasses.py def _check_segmap_shape_and_consistency(cls, values: Dict[str, Any]) -> Dict[str, Any]: """Check that the numb...
return values
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/vectorization/contouring.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/validators/object_validators.py def _check_pupil_point_is_inside_iris(self, point: np.ndarray, polygon_pts: np.nd...
return filtered_polygons
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response_refinement/fragile_bits_refinement.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/encoder/iris_encoder.py def run(self, response: IrisFilterResponse) -> IrisTemplate: ...
for iris_response, iris_mask in zip(iris_filter_response.iris_responses, iris_filter_response.mask_responses): if self.params.fragile_type == "cartesian": mask_value_real = np.abs(np.real(iris_response)) >= self.params.value_threshold[0] mask_value_imaginary = np.abs(np.imag(...
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/geometry_refinement/smoothing.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/dataclasses.py def index_of(self, class_name: str) -> int: """Get class index based on its name. ...
for i in range(-kernel_offset, kernel_offset + 1): stacked_signals.append(np.roll(signal, i))
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/eye_properties_estimation/bisectors_method.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_refinement/smoothing.py def _smooth_circular_shape(self, vertices: np.ndarray, center_...
for _ in range(self.params.max_iterations): random_indices = np.random.choice(len(polygon), size=(self.params.num_bisectors, 2)) first_drawn_points = polygon[random_indices[:, 0]] second_drawn_points = polygon[random_indices[:, 1]] norms = np.linalg.norm(first_drawn_poi...
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/io/dataclasses.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/callbacks/pipeline_trace.py def get(self, result_name: str) -> Any: """Get result_name result. Args: resul...
for index, name in self.index2class.items(): if name == class_name: return index
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/conv_filter_bank.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/encoder/iris_encoder.py def run(self, response: IrisFilterResponse) -> IrisTemplate: """Encode iris...
for i_filter, i_schema in zip(self.params.filters, self.params.probe_schemas): iris_response, mask_response = self._convolve(i_filter, i_schema, normalization_output) iris_responses.append(iris_response) mask_responses.append(mask_response)
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/callbacks/pipeline_trace.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/pipelines/iris_pipeline.py def _init_pipeline_tracing(self) -> PipelineCallTraceStorage: """Instantiate mechanisms fo...
for result_name in self._storage.keys(): self._storage[result_name] = None
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/geometry_refinement/contour_interpolation.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/utils/math.py def estimate_diameter(polygon: np.ndarray) -> float: """Estimates the diameter of an arb...
for (x1, y1), (x2, y2), num_point in zip(previous_boundary, polygon, num_points): x.append(np.linspace(x1, x2, num=num_point, endpoint=False)) y.append(np.linspace(y1, y2, num=num_point, endpoint=False))
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/perspective_normalization.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def _generate_correspondences(self, pupil_points: np.ndar...
for radius in self.params.intermediate_radiuses: ring = pupil_points + radius * (iris_points - pupil_points) ring = np.vstack([ring, ring[0]]) src_points.append(ring)
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/perspective_normalization.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def run( self, image: IRImage, no...
for angle_point_idx in range(src_points.shape[1] - 1): for ring_idx in range(src_points.shape[0] - 1): current_src, current_dst = self._correspondence_rois_coords( angle_idx=angle_point_idx, ring_idx=ring_idx, src_points=src_points,...
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/encoder/iris_encoder.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/iris_response/conv_filter_bank.py def run(self, normalization_output: NormalizedIris) -> IrisFilterResponse: ...
for iris_response, mask_response in zip(response.iris_responses, response.mask_responses): mask_code = mask_response >= self.params.mask_threshold iris_code = np.stack([iris_response.real > 0, iris_response.imag > 0], axis=-1) mask_code = np.stack([mask_code, mask_code], axis=-1) ...
FOR
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/image_filters/gabor_filters.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/iris_response/image_filters/image_filter_interface.py def compute_kernel_values(self) -> np.ndar...
if self.params.dc_correction: # Step 1: calculate mean value of Gabor Wavelet g_mean = np.mean(np.real(kernel_values), axis=-1) # Step 2: define gaussian offset correction_term_mean = np.mean(envelope, axis=-1) # Step 3: substract gaussian kernel_v...
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def get_pixel_binary(image: np.ndarray, pixel_x: float, pixel_y: float) -> b...
if xmin == xmax and not xmax == img_w - 1: xmax += 1
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/probe_schemas/regular_probe_schema.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/validators.py def are_all_positive(cls: type, v: Any, field: fields.ModelField) -> Any: """C...
if isinstance(self.params.boundary_phi, List): phi = np.linspace( 0 + self.params.boundary_phi[0], 1 - self.params.boundary_phi[1], self.params.n_cols, endpoint=True )
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/geometry_refinement/smoothing.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_estimation/linear_extrapolation.py def _estimate(self, vertices: np.ndarray, center_xy: Tuple[float...
if gap_indices.size < 2: return [polygon], gap_indices.size
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/io/dataclasses.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/callbacks/pipeline_trace.py def get(self, result_name: str) -> Any: """Get result_name result. Args: resul...
if name == class_name: return index
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/eye_properties_estimation/bisectors_method.py def _find_center_coords(self, polygon: np.ndarray, diameter: float) -> ...
if xmin == xmax and not xmax == img_w - 1: xmax += 1
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/probe_schemas/regular_probe_schema.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/validators.py def are_all_positive(cls: type, v: Any, field: fields.ModelField) -> Any: """C...
if self.params.boundary_phi == "periodic-left": phi = np.linspace(0, 1, self.params.n_cols, endpoint=False)
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/io/validators.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/dataclasses.py def _check_segmap_shape_and_consistency(cls, values: Dict[str, Any]) -> Dict[str, Any]: """Check that the numb...
if len(values[field1]) != len(values[field2]): raise ValueError( f"{cls.__name__}: {field1} and {field2} length mismatch, " f"resp. {len(values[field1])} and {len(values[field2])}" )
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/eye_properties_estimation/bisectors_method.py def _find_center_coords(self, polygon: np.ndarray, diameter: float) -> ...
if ymin == ymax and not ymax == img_h - 1: ymax += 1
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/image_filters/gabor_filters.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/segmentation/onnx_multilabel_segmentation.py def _preprocess(self, image: np.ndarray) -> Dict[st...
if norm_real > 0: kernel_values.real /= norm_real
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/image_filters/gabor_filters.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/iris_response/image_filters/image_filter_interface.py def compute_kernel_values(self) -> np.ndar...
# normalize kernel values
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/utils/math.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/tests/unit_tests/utils.py def area_of_circular_segment(circle_radius: float, delta_height: float) -> float: """Compute the area of a circular segmen...
# fmt: on
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/image_filters/gabor_filters.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/iris_response/image_filters/image_filter_interface.py def compute_kernel_values(self) -> np.ndar...
# calculate kernel values
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/eye_properties_estimation/bisectors_method.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_refinement/smoothing.py def _smooth_circular_shape(self, vertices: np.ndarray, center_...
# Add perpendicular vector to center and normalize
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/geometry_estimation/lsq_ellipse_fit_with_refinement.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_refinement/contour_points_filter.py def _filter_polygon_points(self, forbidde...
# Rotate such that 0 degree is parallel with x-axis and array is clockwise
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/image_filters/gabor_filters.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/iris_response/image_filters/image_filter_interface.py def compute_kernel_values(self) -> np.ndar...
# convert to polar coordinates
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/probe_schemas/regular_probe_schema.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/io/validators.py def are_all_positive(cls: type, v: Any, field: fields.ModelField) -> Any: """C...
# if image_shape provided: verify that values lie on pixel values
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/eye_properties_estimation/bisectors_method.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/geometry_refinement/smoothing.py def _smooth_circular_shape(self, vertices: np.ndarray, center_...
# Flip xs with ys and flip sign of on of them to create a 90deg rotation
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/image_filters/gabor_filters.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/iris_response/image_filters/image_filter_interface.py def compute_kernel_values(self) -> np.ndar...
# Step 1: calculate mean value of Gabor Wavelet
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/iris_response/image_filters/gabor_filters.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/iris_response/image_filters/image_filter_interface.py def compute_kernel_values(self) -> np.ndar...
# calculate carrier and envelope
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/perspective_normalization.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def _normalize_all( self, original_image:...
try: img_x, img_y = map(int, image_xy) normalized_mask_roi[shifted_y, shifted_x] = iris_mask[img_y, img_x]
TRY
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def get_pixel_binary(image: np.ndarray, pixel_x: float, pixel_y: float) -> b...
try: return image[int(pixel_y), int(pixel_x)]
TRY
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def get_pixel_binary(image: np.ndarray, pixel_x: float, pixel_y: float) -> b...
try: return image[int(pixel_y), int(pixel_x)]
TRY
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def get_pixel_binary(image: np.ndarray, pixel_x: float, pixel_y: float) -> b...
except IndexError: return 0.0
CATCH
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/perspective_normalization.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def _normalize_all( self, original_image:...
except IndexError: normalized_mask_roi[shifted_y, shifted_x] = False
CATCH
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def get_pixel_binary(image: np.ndarray, pixel_x: float, pixel_y: float) -> b...
except IndexError: return 0.0
CATCH
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def get_pixel_binary(image: np.ndarray, pixel_x: float, pixel_y: float) -> b...
def get_pixel_intensity(image: np.ndarray, pixel_x: float, pixel_y: float) -> float: """Get the intensity value of a pixel from an intensity image. Args: image (np.ndarray): Intensity image. pixel_x (float): Pixel x coordinate. pixel_y (float): Pixel y coordinate. ...
METHOD
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>open-iris/src/iris/nodes/normalization/common.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # open-iris/src/iris/nodes/normalization/nonlinear_normalization.py def get_pixel_binary(image: np.ndarray, pixel_x: float, pixel_y: float) -> b...
def get_interpolation_points_coords( image: np.ndarray, pixel_x: float, pixel_y: float ) -> Tuple[float, float, float, float]: """Extract interpolation points coordinates. Args: image (np.ndarray): Original, not normalized image. pixel_x (float): Pixel x coordinate. ...
METHOD
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/row_viewable_matrix.py def rowwise_eq(mat: SparseMatSet, other: SparseMatSet) -> Union[bool, np.ndarray]: """Check equals on ...
"""Return a mask on the postings array indicating which elements contain all terms."""
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/utils/roaringish.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/mat_set.py def __str__(self): as_str = [""] for idx, (row, row_next) in enumerate(zip(self.rows, self...
"""Decode an encoded bit array into keys / payloads."""
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/utils/roaringish.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/postings.py def _check_token_arg(self, token): if isinstance(token, str): return token elif isi...
"""Convert keys to range or np.ndarray of uint64."""
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/phrase/middle_out.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/bitcount.py def bit_count64(arr): """Count the number of bits set in each element in the array.""" arr = arr - (...
"""Count bigram matches between two encoded arrays. Returns: -------- count: number of matches per doc rhs_next: the next rhs array to continue matching """
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/solr.py def listify(x): return x if isinstance(x, list) else [x] # searcharray/searcharray/phrase/middle_out.py def te...
"""Return a boolean numpy array indicating which elements contain the given term."""
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/utils/roaringish.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/mat_set.py def __eq__(self, other): return np.all(self.rows == other.rows) and np.all(self.cols == other.cols...
"""Return payload MSBs from encoded."""
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/solr.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/similarity.py def bm25_legacy_similarity(k1: float = 1.2, b: float = 0.75) -> Similarity: """BM25 similarity prior to LUCENE-8563 with ...
"""Run edismax search over dataframe with searcharray fields. Parameters ---------- q : str The query string mm : str The minimum should match spec qf : list The fields to search pf : list The fields to search for phrase matches pf2 : list The fields ...
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/utils/row_viewable_matrix.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/postings.py def or_query(self, tokens: Union[List[str], List[List[str]]], min_should_match: int = 1) -> np.ndarray...
"""Check equals on a row-by-row basis."""
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/solr.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/postings.py def ws_tokenizer(string): if pd.isna(string): return [] if not isinstance(string, str): raise ValueErro...
"""Parse Solr's qf, pf, pf2, pf3 field boosts."""
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/similarity.py def __call__(self, term_freqs: np.ndarray, doc_freqs: np.ndarray, doc_lens: np.ndarray, avg_doc_lens...
"""Score each doc using a similarity function. Parameters ---------- token : str or list of str of what to search (already tokenized) similarity : How to score the documents. Default is BM25. """
BLOCK_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/phrase/middle_out.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/roaringish.py def encode(self, payload: np.ndarray, keys: Optional[np.ndarray] = None, ...
# Find adjacent matches
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/roaringish.py def convert_keys(keys) -> np.ndarray: """Convert keys to range or np.ndarray of uint64.""" if isinstance(ke...
# When other is a scalar value
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/similarity.py def __call__(self, term_freqs: np.ndarray, doc_freqs: np.ndarray, doc_lens: np.ndarray, avg_doc_lens...
# For expensive toknes, we compute doc freq first, so we
LINE_COMMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/solr.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/phrase/posn_diffs.py def compute_phrase_freqs(term_posns, phrase_freqs, slop=1, width=10): """Compute phrase freq using matrix-diff met...
# otherwise, simple expression
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/phrase/middle_out.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/roaringish.py def encode(self, payload: np.ndarray, keys: Optional[np.ndarray] = None, ...
# ceiling divide
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/roaringish.py def convert_keys(keys) -> np.ndarray: """Convert keys to range or np.ndarray of uint64.""" if isinstance(ke...
# (not looking at positions, maybe we should?)
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/similarity.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/postings.py def or_query(self, tokens: Union[List[str], List[List[str]]], min_should_match: int = 1) -> np.ndarray: """Re...
# Sum doc freqs
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/term_dict.py def get_term_id(self, term): try: return self.term_to_ids[term] except KeyError: ...
# Count number of rows where the term appears
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/phrase/middle_out.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/bitcount.py def bit_count64(arr): """Count the number of bits set in each element in the array.""" arr = arr - (...
# Combine lhs and rhs matches from two strategies
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/utils/roaringish.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/postings.py def _check_token_arg(self, token): if isinstance(token, str): return token elif isi...
# UNFORTUNATE COPY
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prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/phrase/middle_out.py def _termfreqs_with_cache(self, term_id: int) -> Tuple[np.ndarray, np.ndarray]: try: retur...
if slop == 1 and len(tokens) == len(set(tokens)): phrase_freqs = np.zeros(len(self)) try: doc_ids = self.term_mat.rows term_ids = [self.term_dict.get_term_id(token) for token in tokens] return self.posns.phrase_freqs(term_ids, doc_ids=doc_ids, ...
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/solr.py def listify(x): return x if isinstance(x, list) else [x] # searcharray/searcharray/phrase/middle_out.py def te...
if isinstance(token, list): term_freq = self.phrase_freq(token) else: term_freq = self.termfreqs(token)
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/utils/roaringish.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/postings.py def _check_token_arg(self, token): if isinstance(token, str): return token elif isi...
if isinstance(keys, numbers.Number): return np.asarray([keys], dtype=np.uint64) elif isinstance(keys, list): return np.asarray(keys, dtype=np.uint64) elif isinstance(keys, np.ndarray): return keys.astype(np.uint64) elif isinstance(keys, range) and len(keys) > 0: # UNFORTUNATE...
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/roaringish.py def convert_keys(keys) -> np.ndarray: """Convert keys to range or np.ndarray of uint64.""" if isinstance(ke...
if isinstance(token, str): return token elif isinstance(token, list) and len(token) == 1: return token[0] elif isinstance(token, list): return token else: raise TypeError("Expected a string or list of strings for phrases")
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/solr.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/phrase/posn_diffs.py def compute_phrase_freqs(term_posns, phrase_freqs, slop=1, width=10): """Compute phrase freq using matrix-diff met...
if num_clauses <= upper_bound: return result else: result = parse_min_should_match(num_clauses, parts[1])
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/solr.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/similarity.py def bm25_legacy_similarity(k1: float = 1.2, b: float = 0.75) -> Similarity: """BM25 similarity prior to LUCENE-8563 with ...
if mm is None: mm = "1"
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/term_dict.py def get_term_id(self, term): try: return self.term_to_ids[term] except KeyError: ...
if self.term_mat.subset: slice_of_rows = self.term_mat.rows doc_ids, termfreqs = self.posns.termfreqs(term_id, doc_ids=slice_of_rows) mask = np.isin(self.term_mat.rows, doc_ids) matches[mask] = term...
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/solr.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/similarity.py def bm25_legacy_similarity(k1: float = 1.2, b: float = 0.75) -> Similarity: """BM25 similarity prior to LUCENE-8563 with ...
if len(phrase_scores) > 0: phrase_scores = np.sum(phrase_scores, axis=0) # Add where term_scores > 0 term_match_idx = np.where(qf_scores)[0] qf_scores[term_match_idx] += phrase_scores[term_match_idx]
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/solr.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/phrase/posn_diffs.py def compute_phrase_freqs(term_posns, phrase_freqs, slop=1, width=10): """Compute phrase freq using matrix-diff met...
if '<' in spec: # we have conditional spec(s) space_around_less_than_pattern = re.compile(r'\s*<\s*') spec = space_around_less_than_pattern.sub('<', spec) for s in spec.split(): parts = s.split('<', 1) if len(parts) < 2: raise ValueError("Invalid '...
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/phrase/middle_out.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/roaringish.py def slice(self, encoded: np.ndarray, keys: np.ndarray) -> np.ndarray: """Get list of encoded t...
if phrase_freqs.shape[0] == self.max_doc_id + 1: enc_term_posns = [self.encoded_term_posns[term_id] for term_id in term_ids] else: enc_term_posns = [encoder.slice(self.encoded_term_posns[term_id], keys=doc_ids.view(np.uint64)) for term_id in te...
IF
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/utils/roaringish.py def convert_keys(keys) -> np.ndarray: """Convert keys to range or np.ndarray of uint64.""" if isinstance(ke...
return np.array([], dtype=bool)
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/solr.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/postings.py def positions(self, term=None): if self.posns is None: return {} if term is None: p...
max_scores = np.zeros(len(frame))
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/phrase/posn_diffs.py def stack_term_posns(term_posns: List[List[np.ndarray]], phrase_freqs: np.ndarray, width: int = 10): # Pad for...
mask = mask & curr_mask
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle
<filename>searcharray/searcharray/postings.py<fim_prefix>""" Here are some snippets of code retrieved from other files in this repository that may help you: # searcharray/searcharray/term_dict.py def get_term_id(self, term): try: return self.term_to_ids[term] except KeyError: ...
return matches
STATEMENT
prefix_suffix_full_complete_current_block_with_repo_rag_oracle