publish: code-rebuttal (Rebuttal scripts: spatial-CV orchestration, final-model training/inference, insp)
71e5ad9 verified | #!/usr/bin/env python3 | |
| """ | |
| progress.py — live progress monitor for in-flight rebuttal GPU runs. | |
| Reads the per-worker log files written by mc_dropout_inference.py and | |
| run_kfold.py, parses the most recent progress line per worker, and | |
| prints per-shard / per-fold status plus an aggregate %. | |
| Usage (from any terminal — does not need to share state with the run): | |
| # snapshot (one-shot) | |
| python rebuttal/gpu_experiments/progress.py | |
| # auto-refresh every 5 s | |
| python rebuttal/gpu_experiments/progress.py --watch | |
| python rebuttal/gpu_experiments/progress.py --watch --interval 10 | |
| # only one experiment | |
| python rebuttal/gpu_experiments/progress.py --mc | |
| python rebuttal/gpu_experiments/progress.py --kfold | |
| No third-party dependencies — pure stdlib so it works without the venv. | |
| """ | |
| from __future__ import annotations | |
| import argparse | |
| import glob | |
| import os | |
| import re | |
| import sys | |
| import time | |
| from pathlib import Path | |
| # Resolve worker-log dirs relative to this file's location | |
| _THIS = Path(__file__).resolve() | |
| _BASE = _THIS.parent | |
| MC_LOG_GLOB = str(_BASE / 'uncertainty' / 'worker_logs' / 'shard_*.log') | |
| KFOLD_LOG_GLOB = str(_BASE / 'spatial_kfold' / 'worker_logs' / 'fold_*.log') | |
| # Regexes for the progress signals each script emits | |
| RE_MC_BATCH = re.compile(r'batch (\d+)/(\d+)\s+point (\d+)/(\d+)\s+elapsed ([\d.]+)s\s+ETA (\d+)s') | |
| RE_KFOLD_EPOCH = re.compile(r'Fold (\d+) \| Epoch (\d+)/(\d+) \| train_loss=([\d.]+) \| val_R²=([-\d.]+) \| val_RMSE=([\d.]+)') | |
| def _tail(path: str, max_bytes: int = 16384) -> str: | |
| try: | |
| size = os.path.getsize(path) | |
| with open(path, 'rb') as f: | |
| if size > max_bytes: | |
| f.seek(-max_bytes, 2) | |
| return f.read().decode('utf-8', errors='replace') | |
| except OSError: | |
| return '' | |
| def _detect_phase(txt: str) -> str: | |
| if 'wrote _shard_' in txt or 'wrote fold_' in txt or ('wrote ' in txt and 'results.pkl' in txt): | |
| return 'done' | |
| if 'Streaming' in txt or 'Total batches' in txt: | |
| # Streaming started but no batch_N/M line yet → first batch hasn't | |
| # completed. Use a distinct phase so the print code doesn't try to | |
| # read batches_done / batches_total fields that aren't populated. | |
| return 'mc_starting' | |
| if 'points in shard' in txt: | |
| return 'loading_data' | |
| if 'recomputing' in txt or 'survey_date' in txt: | |
| return 'norm_recompute' | |
| if txt.strip(): | |
| return 'starting' | |
| return 'launching' | |
| def status_mc(globpat: str = MC_LOG_GLOB) -> list[dict]: | |
| logs = sorted(glob.glob(globpat)) | |
| rows = [] | |
| for f in logs: | |
| txt = _tail(f) | |
| short = os.path.basename(f) | |
| matches = list(RE_MC_BATCH.finditer(txt)) | |
| if matches: | |
| m = matches[-1] | |
| rows.append({ | |
| 'file': short, 'kind': 'shard', | |
| 'batches_done': int(m.group(1)), | |
| 'batches_total': int(m.group(2)), | |
| 'points_done': int(m.group(3)), | |
| 'points_total': int(m.group(4)), | |
| 'elapsed_s': float(m.group(5)), | |
| 'eta_s': int(m.group(6)), | |
| 'phase': 'mc_sampling', | |
| }) | |
| else: | |
| rows.append({'file': short, 'kind': 'shard', | |
| 'phase': _detect_phase(txt)}) | |
| return rows | |
| def status_kfold(globpat: str = KFOLD_LOG_GLOB) -> list[dict]: | |
| logs = sorted(glob.glob(globpat)) | |
| rows = [] | |
| for f in logs: | |
| txt = _tail(f) | |
| short = os.path.basename(f) | |
| matches = list(RE_KFOLD_EPOCH.finditer(txt)) | |
| if matches: | |
| m = matches[-1] | |
| rows.append({ | |
| 'file': short, 'kind': 'fold', | |
| 'fold_id': int(m.group(1)), | |
| 'epoch': int(m.group(2)), | |
| 'epoch_total': int(m.group(3)), | |
| 'train_loss': float(m.group(4)), | |
| 'val_r2': float(m.group(5)), | |
| 'val_rmse': float(m.group(6)), | |
| 'phase': 'training', | |
| }) | |
| else: | |
| rows.append({'file': short, 'kind': 'fold', | |
| 'phase': _detect_phase(txt)}) | |
| return rows | |
| def _print_mc(rows: list[dict]) -> None: | |
| print('=' * 70) | |
| print(f'MC dropout inference ({len(rows)} shards)') | |
| print('-' * 70) | |
| if not rows: | |
| print(' (no worker logs found — has the script started?)') | |
| return | |
| total_d = total_t = 0 | |
| for r in rows: | |
| # Only treat as mc_sampling if we actually parsed a batch_N/M line. | |
| if r['phase'] == 'mc_sampling' and 'batches_done' in r: | |
| d, t = r['batches_done'], r['batches_total'] | |
| total_d += d; total_t += t | |
| print(f' {r["file"]:<22} batch {d:>4}/{t:<4} ' | |
| f'({100*d/t:5.1f}%) ETA {r["eta_s"]}s') | |
| else: | |
| tag = { | |
| 'norm_recompute': 'recomputing normalisation stats', | |
| 'loading_data': 'building hashmap / loading dataset', | |
| 'mc_starting': 'streaming started, first batch in flight', | |
| 'launching': 'launching / importing', | |
| 'starting': 'starting up', | |
| 'done': 'DONE ✓', | |
| }.get(r['phase'], r['phase']) | |
| print(f' {r["file"]:<22} [{tag}]') | |
| if total_t: | |
| print('-' * 70) | |
| print(f' AGGREGATE {total_d:>5}/{total_t:<5} ' | |
| f'({100*total_d/total_t:5.1f}%)') | |
| def _print_kfold(rows: list[dict]) -> None: | |
| print('=' * 70) | |
| print(f'Spatial k-fold CV ({len(rows)} fold workers)') | |
| print('-' * 70) | |
| if not rows: | |
| print(' (no worker logs found)') | |
| return | |
| total_d = total_t = 0 | |
| for r in rows: | |
| if r['phase'] == 'training' and 'epoch' in r: | |
| e, et = r['epoch'], r['epoch_total'] | |
| total_d += e; total_t += et | |
| print(f' {r["file"]:<22} fold {r["fold_id"]} ' | |
| f'epoch {e:>3}/{et:<3} ({100*e/et:5.1f}%) ' | |
| f'val R²={r["val_r2"]:.4f} RMSE={r["val_rmse"]:.3f}') | |
| else: | |
| tag = { | |
| 'norm_recompute': 'normalisation stats', | |
| 'loading_data': 'building hashmap / loading dataset', | |
| 'mc_starting': 'first batch in flight', | |
| 'launching': 'launching / importing', | |
| 'starting': 'starting up', | |
| 'done': 'DONE ✓', | |
| }.get(r['phase'], r['phase']) | |
| print(f' {r["file"]:<22} [{tag}]') | |
| if total_t: | |
| print('-' * 70) | |
| print(f' AGGREGATE {total_d:>4}/{total_t:<4} epochs ' | |
| f'({100*total_d/total_t:5.1f}%)') | |
| def main(): | |
| p = argparse.ArgumentParser(description=__doc__.splitlines()[0]) | |
| p.add_argument('--watch', action='store_true', | |
| help='Re-print every --interval seconds until Ctrl+C') | |
| p.add_argument('--interval', type=int, default=5, | |
| help='Refresh interval for --watch (seconds, default 5)') | |
| p.add_argument('--mc', action='store_true', help='Only show MC dropout') | |
| p.add_argument('--kfold', action='store_true', help='Only show k-fold') | |
| args = p.parse_args() | |
| def render(): | |
| if args.watch: | |
| # ANSI clear screen | |
| sys.stdout.write('\x1b[2J\x1b[H') | |
| ts = time.strftime('%Y-%m-%d %H:%M:%S') | |
| print(f'[progress.py {ts}]') | |
| if args.kfold and not args.mc: | |
| _print_kfold(status_kfold()) | |
| elif args.mc and not args.kfold: | |
| _print_mc(status_mc()) | |
| else: | |
| _print_mc(status_mc()) | |
| print() | |
| _print_kfold(status_kfold()) | |
| sys.stdout.flush() | |
| if args.watch: | |
| try: | |
| while True: | |
| render() | |
| time.sleep(args.interval) | |
| except KeyboardInterrupt: | |
| print('\n(stopped)') | |
| else: | |
| render() | |
| if __name__ == '__main__': | |
| main() | |