publish: code-rebuttal (Rebuttal scripts: spatial-CV orchestration, final-model training/inference, insp)
71e5ad9 verified | #!/usr/bin/env python3 | |
| """ | |
| run_folds_parallel.py — parallel orchestrator for run_kfold.py. | |
| Each fold of run_kfold.py is small enough to fit comfortably on one GH200 | |
| (model ~1.2M params + tiny batches, < 5 GB per fold of 96 GB HBM). With | |
| --folds-per-gpu N, the orchestrator packs N fold subprocesses on each GPU | |
| so all 10 folds can run simultaneously on 4 GH200s. Each subprocess is | |
| pinned to one GPU via CUDA_VISIBLE_DEVICES; CUDA time-slices among the | |
| processes sharing a device. | |
| Usage — 4 folds at a time, one per GPU (legacy default): | |
| python run_folds_parallel.py \ | |
| --num-folds 10 --num-parallel 4 \ | |
| -- <run_kfold.py args> | |
| Usage — all 10 folds at once on 4 GPUs (3 folds per GPU): | |
| python run_folds_parallel.py \ | |
| --num-folds 10 --num-parallel 10 --folds-per-gpu 3 \ | |
| -- \ | |
| --model-size big --num_heads 4 --num_layers 3 \ | |
| --hidden_size 128 --dropout_rate 0.3 \ | |
| --lr 2e-4 --lr-scheduler cosine --lr-min 1e-6 \ | |
| --loss_type l1 --target_transform log \ | |
| --per-gpu-batch-size 256 --effective-batch-size 256 \ | |
| --num-epochs 300 --seed-base 42 | |
| Everything AFTER the `--` is forwarded verbatim to each run_kfold.py call. | |
| The `--fold N`, `--num-folds`, and CUDA_VISIBLE_DEVICES are injected per | |
| subprocess. | |
| Logs per fold are written to: | |
| {output-dir}/fold_{i}_console.log | |
| The orchestrator prints a one-line status update for each fold start and | |
| finish so you can follow progress in real time. | |
| """ | |
| from __future__ import annotations | |
| import argparse | |
| import os | |
| import subprocess | |
| import sys | |
| import time | |
| from pathlib import Path | |
| HERE = Path(__file__).resolve().parent | |
| RUN_KFOLD = HERE / "run_kfold.py" | |
| def parse(): | |
| p = argparse.ArgumentParser( | |
| description="Parallel orchestrator for spatial k-fold CV.", | |
| formatter_class=argparse.RawDescriptionHelpFormatter, | |
| epilog=__doc__, | |
| ) | |
| p.add_argument('--num-folds', type=int, default=10, | |
| help="Total number of folds (default 10).") | |
| p.add_argument('--num-parallel', type=int, default=4, | |
| help="How many folds to run concurrently. Defaults to " | |
| "min(num_folds, num_gpus_visible * folds_per_gpu).") | |
| p.add_argument('--folds-per-gpu', type=int, default=1, | |
| help="How many fold processes to pack on each GPU. Default 1. " | |
| "Set to 3 to run all 10 folds across 4 GPUs simultaneously " | |
| "(slot_idx %% num_gpus picks the GPU). GH200s have ~96 GB " | |
| "and each fold uses well under 5 GB, so 3 is safe.") | |
| p.add_argument('--output-dir', type=str, | |
| default=str(HERE), | |
| help="Directory for per-fold log files (default: this dir).") | |
| p.add_argument('--num-gpus', type=int, default=None, | |
| help="Override detected GPU count. Default: torch.cuda.device_count().") | |
| return p.parse_known_args() | |
| def detect_gpus(): | |
| try: | |
| import torch | |
| return torch.cuda.device_count() | |
| except Exception: | |
| return 0 | |
| def main(): | |
| args, passthrough = parse() | |
| # Strip leading '--' from passthrough if present | |
| if passthrough and passthrough[0] == '--': | |
| passthrough = passthrough[1:] | |
| num_gpus = args.num_gpus or detect_gpus() | |
| if num_gpus == 0: | |
| print("ERROR: no CUDA GPUs detected.", file=sys.stderr) | |
| sys.exit(2) | |
| total_slots = num_gpus * args.folds_per_gpu | |
| n_parallel = min(args.num_parallel, total_slots, args.num_folds) | |
| slot_to_gpu = {slot: slot % num_gpus for slot in range(total_slots)} | |
| print(f"[orchestrator] {args.num_folds} folds, " | |
| f"{num_gpus} GPUs, {args.folds_per_gpu} folds/GPU " | |
| f"({total_slots} slots), running {n_parallel} in parallel.") | |
| print(f"[orchestrator] passthrough args: {' '.join(passthrough)}") | |
| out_dir = Path(args.output_dir) | |
| out_dir.mkdir(parents=True, exist_ok=True) | |
| # Build the fold queue | |
| pending = list(range(args.num_folds)) | |
| running: dict[int, subprocess.Popen] = {} # slot_idx -> Popen | |
| fold_for_slot: dict[int, int] = {} # slot_idx -> fold_idx | |
| started_at: dict[int, float] = {} # fold_idx -> ts | |
| def launch(fold_idx: int, slot_idx: int) -> subprocess.Popen: | |
| gpu_id = slot_to_gpu[slot_idx] | |
| env = os.environ.copy() | |
| env['CUDA_VISIBLE_DEVICES'] = str(gpu_id) | |
| # Ensure each fold's wandb subdir doesn't collide | |
| env.setdefault('WANDB_MODE', 'disabled') | |
| env.setdefault('PYTHONUNBUFFERED', '1') | |
| cmd = [sys.executable, str(RUN_KFOLD), | |
| '--fold', str(fold_idx), | |
| '--num-folds', str(args.num_folds)] + passthrough | |
| log_path = out_dir / f'fold_{fold_idx}_console.log' | |
| log_fh = open(log_path, 'w', buffering=1) | |
| proc = subprocess.Popen( | |
| cmd, env=env, stdout=log_fh, stderr=subprocess.STDOUT, | |
| cwd=str(HERE.parents[2]), # SOCmapping root | |
| ) | |
| proc._log_fh = log_fh | |
| proc._log_path = log_path | |
| started_at[fold_idx] = time.time() | |
| print(f"[orchestrator] launched fold {fold_idx} on slot {slot_idx} " | |
| f"(GPU {gpu_id}, PID {proc.pid}, log: {log_path.name})") | |
| return proc | |
| # Initial fill | |
| for slot_idx in range(n_parallel): | |
| if not pending: | |
| break | |
| fold = pending.pop(0) | |
| running[slot_idx] = launch(fold, slot_idx) | |
| fold_for_slot[slot_idx] = fold | |
| # Poll loop | |
| rc_by_fold: dict[int, int] = {} | |
| while running: | |
| time.sleep(2) | |
| finished = [] | |
| for slot_idx, proc in running.items(): | |
| rc = proc.poll() | |
| if rc is not None: | |
| fold = fold_for_slot[slot_idx] | |
| gpu_id = slot_to_gpu[slot_idx] | |
| dt = time.time() - started_at[fold] | |
| status = "OK" if rc == 0 else f"FAILED (rc={rc})" | |
| print(f"[orchestrator] fold {fold} on slot {slot_idx} " | |
| f"(GPU {gpu_id}) {status} ({dt/60:.1f} min)") | |
| proc._log_fh.close() | |
| rc_by_fold[fold] = rc | |
| finished.append(slot_idx) | |
| for slot_idx in finished: | |
| running.pop(slot_idx) | |
| fold_for_slot.pop(slot_idx) | |
| if pending: | |
| next_fold = pending.pop(0) | |
| running[slot_idx] = launch(next_fold, slot_idx) | |
| fold_for_slot[slot_idx] = next_fold | |
| # Summary | |
| n_ok = sum(1 for rc in rc_by_fold.values() if rc == 0) | |
| n_fail = len(rc_by_fold) - n_ok | |
| print() | |
| print(f"[orchestrator] DONE — {n_ok}/{len(rc_by_fold)} folds succeeded, " | |
| f"{n_fail} failed.") | |
| if n_fail: | |
| failed = sorted(f for f, rc in rc_by_fold.items() if rc != 0) | |
| print(f"[orchestrator] failed folds: {failed}") | |
| print(f"[orchestrator] inspect logs: {out_dir}/fold_<i>_console.log") | |
| sys.exit(1) | |
| # Aggregate: read all per-fold predictions and write the cross-fold tables. | |
| # Passthrough is reused so the recipe metadata (max_oc, sampler_mode, etc.) | |
| # ends up in kfold_results.md / summary.json. | |
| print(f"[orchestrator] aggregating cross-fold results …") | |
| agg_cmd = [sys.executable, str(RUN_KFOLD), | |
| '--aggregate-only', | |
| '--num-folds', str(args.num_folds)] + passthrough | |
| agg_env = os.environ.copy() | |
| agg_env.setdefault('WANDB_MODE', 'disabled') | |
| rc = subprocess.call(agg_cmd, env=agg_env, cwd=str(HERE.parents[2])) | |
| if rc != 0: | |
| print(f"[orchestrator] aggregate-only step failed (rc={rc}). " | |
| f"Per-fold parquets are still on disk; rerun manually with " | |
| f"`python {RUN_KFOLD.name} --aggregate-only`.") | |
| sys.exit(rc) | |
| print(f"[orchestrator] kfold_results.md + summary.json written to " | |
| f"{out_dir}") | |
| if __name__ == "__main__": | |
| main() | |