pdb_id
string
chain1
string
res_name1
string
res_seq_num1
int64
ins_code1
string
chain2
string
res_name2
string
res_seq_num2
int64
ins_code2
string
min_distance
float64
symmetry_op
string
label_final
string
label_bp
string
label_bs
string
filename
string
pair_type
string
pair_id
string
pdb_key
string
base1_type
string
base2_type
string
geometry_ok_01
float64
base_plane_angle_deg
float64
c1p_c1p_distance_A
float64
stack_interplane_distance_A
float64
stack_overlap_area_A2
float64
stack_parallel_plane_angle_deg
float64
hbond_min_da_dist
float64
hbond_num_da_lt_3p5
float64
hbond_max_angle_for_da_lt_3p5
float64
hbond_num_full
float64
hbond_pattern_present_01
float64
hbond_angle_defined_01
float64
coords_found_01
int64
core_feature_found_01
int64
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bp
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identity
basestacks
non-bp
bs
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identity
basepair
bp
non-bs
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CU
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identity
basepair
bp
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non-bs
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identity
basestacks
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bs
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basepair
bp
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basestacks
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bs
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basestacks
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bp
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identity
basestacks
non-bp
bs
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identity
basepair
bp
non-bs
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1
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1
1
1
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0
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identity
basepair
bp
non-bs
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identity
basestacks
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bs
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BA
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identity
basestacks
non-bp
bs
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CC
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identity
basestacks
non-bp
bs
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identity
non-interacting
non-bp
non-bs
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identity
basestacks
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bs
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1
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identity
basestacks
non-bp
bs
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AC
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1
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identity
basepair
bp
non-bs
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AG
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A
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0
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1yi2
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206
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438
null
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identity
basepair
bp
non-bs
1yi2_0_206_0_438_G_C
CG
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1
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identity
basepair
bp
non-bs
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AA
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1
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1
1
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identity
basepair
bp
non-bs
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identity
basepair
bp
non-bs
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identity
basestacks
non-bp
bs
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AU
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identity
non-interacting
non-bp
non-bs
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identity
basestacks
non-bp
bs
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0
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identity
basestacks
non-bp
bs
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1
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identity
basepair
bp
non-bs
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GG
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100.12033
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1
1
1
1
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identity
basepair
bp
non-bs
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CU
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null
0
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identity
basepair
bp
non-bs
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AU
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1yi2
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identity
basepair
bp
non-bs
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1YI2_0_17_0_526_G_U
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1
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117.64203
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1
1
1
1
1yi2
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identity
basepair
bp
non-bs
1yi2_0_1153_0_2786_C_G
CG
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1
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1
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1
1
1
1
1
2zjq
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null
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identity
non-interacting
non-bp
non-bs
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GU
2ZJQ_X_2_X_2869_G_U
2zjq
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1
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null
0
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1
1
4ujc
A2
A
4,703
null
A2
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4,911
null
2.3505
identity
basepair
bp
non-bs
4ujc_A2_4703_A2_4911_A_A
AA
4UJC_A2_4703_A2_4911_A_A
4ujc
A
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1
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3.3002
1
73.150154
0
0
1
1
1
1yi2
0
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1,374
null
0
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null
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identity
basestacks
non-bp
bs
1yi2_0_1374_0_1431_C_C
CC
1YI2_0_1374_0_1431_C_C
1yi2
C
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1
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48.474988
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null
0
0
0
1
1
2zjq
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null
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identity
basepair
bp
non-bs
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GU
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1
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124.295774
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1
1
1
1
3j9w
AA
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null
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identity
basestacks
non-bp
bs
3j9w_AA_885_AA_886_C_A
AC
3J9W_AA_885_AA_886_C_A
3j9w
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1
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1
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0
0
1
1
1
3j9w
AA
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125
null
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identity
basestacks
non-bp
bs
3j9w_AA_124_AA_125_G_G
GG
3J9W_AA_124_AA_125_G_G
3j9w
G
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1
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1
94.205461
1
1
1
1
1
1yi2
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C
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null
9
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null
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identity
basestacks
non-bp
bs
1yi2_9_96_9_97_C_U
CU
1YI2_9_96_9_97_C_U
1yi2
C
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1
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1
79.960249
0
0
1
1
1
1yi2
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23
null
0
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null
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identity
basepair
bp
non-bs
1yi2_0_23_0_519_G_A
AG
1YI2_0_23_0_519_G_A
1yi2
G
A
1
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0
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1
106.869577
1
1
1
1
1
3j9w
AA
G
213
null
AA
C
227
null
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identity
basestacks
non-bp
bs
3j9w_AA_213_AA_227_G_C
CG
3J9W_AA_213_AA_227_G_C
3j9w
G
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1
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2
93.592792
1
1
1
1
1
3j9w
AA
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null
AA
A
94
null
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identity
basestacks
non-bp
bs
3j9w_AA_93_AA_94_G_A
AG
3J9W_AA_93_AA_94_G_A
3j9w
G
A
1
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null
0
0
0
1
1
4x62
A
A
10
null
A
A
16
null
21.4692
identity
non-interacting
non-bp
non-bs
4x62_A_10_A_16_A_A
AA
4X62_A_10_A_16_A_A
4x62
A
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1
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22.179807
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null
0
0
0
1
1
1yi2
0
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468
null
0
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473
null
2.7277
identity
basepair
bp
non-bs
1yi2_0_468_0_473_U_A
AU
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U
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1
1
1
1
4x62
A
C
562
null
A
U
884
null
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identity
basepair
bp
non-bs
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CU
4X62_A_562_A_884_C_U
4x62
C
U
1
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0
null
0
0
0
1
1
3j9w
AA
G
71
null
AA
A
99
null
3.0658
identity
basestacks
non-bp
bs
3j9w_AA_71_AA_99_G_A
AG
3J9W_AA_71_AA_99_G_A
3j9w
G
A
1
13.040922
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0
13.040922
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1
81.608882
0
0
1
1
1
1yi2
0
A
67
null
0
U
109
null
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identity
basestacks
non-bp
bs
1yi2_0_67_0_109_A_U
AU
1YI2_0_67_0_109_A_U
1yi2
A
U
1
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0
33.448432
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0
null
0
0
0
1
1
1z7f
B
A
10
null
C
U
24
null
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identity
basestacks
non-bp
bs
1z7f_B_10_C_24_A_U
AU
1Z7F_B_10_C_24_A_U
1z7f
A
U
1
2.888467
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0
2.888467
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0
null
0
0
0
1
1
2zjq
X
U
2,541
null
X
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null
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identity
basestacks
non-bp
bs
2zjq_X_2541_X_2542_U_U
UU
2ZJQ_X_2541_X_2542_U_U
2zjq
U
U
1
11.889846
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11.889846
3.314032
1
100.495665
1
1
1
1
1
1yi2
0
A
11
null
0
A
532
null
3.309
identity
basestacks
non-bp
bs
1yi2_0_11_0_532_A_A
AA
1YI2_0_11_0_532_A_A
1yi2
A
A
1
0.816777
7.803117
3.289518
2.381881
0.816777
3.8086
0
null
0
0
0
1
1
1yi2
0
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1,382
null
0
G
1,401
null
3.3286
identity
basestacks
non-bp
bs
1yi2_0_1382_0_1401_G_G
GG
1YI2_0_1382_0_1401_G_G
1yi2
G
G
1
2.028221
7.135911
3.359893
0
2.028221
3.417342
3
100.391949
2
1
1
1
1
1yi2
0
G
1,053
null
0
C
1,061
null
2.8159
identity
basepair
bp
non-bs
1yi2_0_1053_0_1061_G_C
CG
1YI2_0_1053_0_1061_G_C
1yi2
G
C
1
8.211651
10.742286
0.268027
0
8.211651
2.815858
3
121.98041
3
1
1
1
1
2zjq
X
G
2,757
null
X
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2,759
null
2.7243
identity
basepair
bp
non-bs
2zjq_X_2757_X_2759_G_U
GU
2ZJQ_X_2757_X_2759_G_U
2zjq
G
U
1
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2.0988
0
52.755909
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1
95.671228
1
1
1
1
1
4x62
A
A
8
null
A
G
544
null
18.9389
identity
non-interacting
non-bp
non-bs
4x62_A_8_A_544_A_G
AG
4X62_A_8_A_544_A_G
4x62
A
G
1
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22.300927
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0
86.174267
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0
null
0
0
0
1
1
1yi2
0
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1,302
null
0
G
1,354
null
3.3135
identity
basestacks
non-bp
bs
1yi2_0_1302_0_1354_G_G
GG
1YI2_0_1302_0_1354_G_G
1yi2
G
G
1
2.917069
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3.3232
0
2.917069
3.44278
1
107.544279
1
1
1
1
1
6dti
A
A
10
null
A
G
528
null
21.9485
identity
non-interacting
non-bp
non-bs
6dti_A_10_A_528_A_G
AG
6DTI_A_10_A_528_A_G
6dti
A
G
1
23.65534
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0
23.65534
23.18522
0
null
0
0
0
1
1
3j9w
AA
A
684
null
AA
A
724
null
3.3831
identity
basepair
bp
non-bs
3j9w_AA_684_AA_724_A_A
AA
3J9W_AA_684_AA_724_A_A
3j9w
A
A
1
23.3405
13.542573
0.697976
0
23.3405
3.383097
1
100.259812
1
1
1
1
1
4oq9
P
A
162
null
d
A
165
null
9.6311
identity
non-interacting
non-bp
non-bs
4oq9_P_162_d_165_A_A
AA
4OQ9_P_162_D_165_A_A
4oq9
A
A
1
39.577213
18.392273
7.158028
0
39.577213
10.380226
0
null
0
0
0
1
1
2zjq
X
G
79
null
X
G
105
null
3.1082
identity
basestacks
non-bp
bs
2zjq_X_79_X_105_G_G
GG
2ZJQ_X_79_X_105_G_G
2zjq
G
G
1
15.127951
7.535332
3.274229
0.068137
15.127951
3.327404
3
112.752932
2
1
1
1
1
3j9w
BA
A
5
null
BA
A
2,923
null
3.3796
identity
basestacks
non-bp
bs
3j9w_BA_5_BA_2923_A_A
AA
3J9W_BA_5_BA_2923_A_A
3j9w
A
A
1
10.754065
8.152321
3.400473
0.185058
10.754065
4.02255
0
null
0
0
0
1
1
3j9w
AA
G
808
null
AA
G
809
null
3.1021
identity
basestacks
non-bp
bs
3j9w_AA_808_AA_809_G_G
GG
3J9W_AA_808_AA_809_G_G
3j9w
G
G
1
9.432487
5.032223
3.232737
2.959867
9.432487
3.155073
2
110.591465
1
1
1
1
1
3j9w
AX
A
70
null
AX
C
71
null
2.8271
identity
basestacks
non-bp
bs
3j9w_AX_70_AX_71_A_C
AC
3J9W_AX_70_AX_71_A_C
3j9w
A
C
1
17.148662
5.55014
3.582762
1.144806
17.148662
3.70543
0
null
0
0
0
1
1
3j9w
BA
C
271
null
BA
C
272
null
3.6365
identity
basestacks
non-bp
bs
3j9w_BA_271_BA_272_C_C
CC
3J9W_BA_271_BA_272_C_C
3j9w
C
C
1
21.418067
5.928198
3.523357
0
21.418067
4.207221
0
null
0
0
0
1
1
6ozp
C
C
16
null
D
A
21
null
6.7639
identity
non-interacting
non-bp
non-bs
6ozp_C_16_D_21_C_A
AC
6OZP_C_16_D_21_C_A
6ozp
C
A
1
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6.698345
0
8.33887
6.819797
0
null
0
0
0
1
1
3j9w
BA
A
622
null
BA
A
2,047
null
3.0855
identity
basestacks
non-bp
bs
3j9w_BA_622_BA_2047_A_A
AA
3J9W_BA_622_BA_2047_A_A
3j9w
A
A
1
13.273692
6.855225
3.11665
0
13.273692
3.77113
0
null
0
0
0
1
1
2fmt
C
C
74
null
C
C
75
null
3.1981
identity
basestacks
non-bp
bs
2fmt_C_74_C_75_C_C
CC
2FMT_C_74_C_75_C_C
2fmt
C
C
1
20.704508
5.955325
3.62214
0
20.704508
3.677126
0
null
0
0
0
1
1
2zjq
X
A
2,277
null
X
A
2,278
null
2.8442
identity
basestacks
non-bp
bs
2zjq_X_2277_X_2278_A_A
AA
2ZJQ_X_2277_X_2278_A_A
2zjq
A
A
1
11.31817
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2.981845
0.618728
11.31817
2.844179
2
132.388627
2
1
1
1
1
2zjq
Y
C
34
null
Y
C
35
null
3.1581
identity
basestacks
non-bp
bs
2zjq_Y_34_Y_35_C_C
CC
2ZJQ_Y_34_Y_35_C_C
2zjq
C
C
1
7.986192
5.420216
3.253487
0.000319
7.986192
3.287594
1
75.01249
0
0
1
1
1
2zjq
X
A
740
null
X
G
741
null
2.9742
identity
basestacks
non-bp
bs
2zjq_X_740_X_741_A_G
AG
2ZJQ_X_740_X_741_A_G
2zjq
A
G
1
24.624481
5.834062
3.769195
3.539602
24.624481
3.397776
2
97.276938
1
1
1
1
1
3j9w
BA
A
449
null
BA
A
469
null
3.5893
identity
basepair
bp
non-bs
3j9w_BA_449_BA_469_A_A
AA
3J9W_BA_449_BA_469_A_A
3j9w
A
A
1
74.16443
13.69692
1.494119
0
74.16443
3.589271
0
null
0
0
0
1
1
3b5a
A
U
7
null
B
G
8
null
3.0225
identity
basepair
bp
non-bs
3b5a_A_7_B_8_U_G
GU
3B5A_A_7_B_8_U_G
3b5a
U
G
1
15.318145
10.741814
0.447831
0
15.318145
3.022501
1
113.771295
1
1
1
1
1
1yi2
0
A
1,271
null
0
U
1,285
null
2.8192
identity
basepair
bp
non-bs
1yi2_0_1271_0_1285_A_U
AU
1YI2_0_1271_0_1285_A_U
1yi2
A
U
1
17.829016
10.41031
0.557124
0
17.829016
2.819216
2
118.821726
2
1
1
1
1
2zjq
X
C
1,966
null
X
U
1,967
null
3.2846
identity
basestacks
non-bp
bs
2zjq_X_1966_X_1967_C_U
CU
2ZJQ_X_1966_X_1967_C_U
2zjq
C
U
1
13.656313
5.834046
3.305586
0
13.656313
3.299689
1
103.038207
1
1
1
1
1
1yi2
0
C
1,083
null
0
A
1,124
null
2.7989
identity
basepair
bp
non-bs
1yi2_0_1083_0_1124_C_A
AC
1YI2_0_1083_0_1124_C_A
1yi2
C
A
1
42.011068
9.037677
1.569601
0
42.011068
2.798914
1
134.577416
1
1
1
1
1
3ov7
C
C
30
null
C
C
31
null
3.1658
identity
basestacks
non-bp
bs
3ov7_C_30_C_31_C_C
CC
3OV7_C_30_C_31_C_C
3ov7
C
C
1
7.104803
5.502216
3.255717
0.006314
7.104803
3.461182
1
70.960589
0
0
1
1
1
4x62
A
U
1,056
null
A
U
1,205
null
3.3829
identity
basepair
bp
non-bs
4x62_A_1056_A_1205_U_U
UU
4X62_A_1056_A_1205_U_U
4x62
U
U
1
8.338295
7.028551
2.71401
0
8.338295
3.382876
1
91.874767
1
1
1
1
1
2fmt
D
C
40
null
D
C
41
null
3.1377
identity
basestacks
non-bp
bs
2fmt_D_40_D_41_C_C
CC
2FMT_D_40_D_41_C_C
2fmt
C
C
1
2.876458
5.572997
3.150526
0
2.876458
3.688572
0
null
0
0
0
1
1
2zjq
Y
A
17
null
Y
A
112
null
3.2261
identity
basestacks
non-bp
bs
2zjq_Y_17_Y_112_A_A
AA
2ZJQ_Y_17_Y_112_A_A
2zjq
A
A
1
5.253548
4.270696
3.242683
0.05624
5.253548
3.660415
0
null
0
0
0
1
1
2zjq
X
C
2,628
null
X
A
2,649
null
4.1957
identity
basepair
bp
non-bs
2zjq_X_2628_X_2649_C_A
AC
2ZJQ_X_2628_X_2649_C_A
2zjq
C
A
1
13.153654
13.565853
1.575553
0
13.153654
4.856451
0
null
0
0
0
1
1
1z7f
C
A
25
null
C
A
26
null
3.3147
identity
basestacks
non-bp
bs
1z7f_C_25_C_26_A_A
AA
1Z7F_C_25_C_26_A_A
1z7f
A
A
1
6.178636
5.297085
3.532052
1.123904
6.178636
4.057854
0
null
0
0
0
1
1
1yi2
0
G
1,363
null
0
G
1,364
null
3.163
identity
basestacks
non-bp
bs
1yi2_0_1363_0_1364_G_G
GG
1YI2_0_1363_0_1364_G_G
1yi2
G
G
1
6.026809
5.03809
3.386393
1.909097
6.026809
3.439937
1
84.790174
0
0
1
1
1
3j9w
AA
U
15
null
AA
A
924
null
3.7953
identity
basestacks
non-bp
bs
3j9w_AA_15_AA_924_U_A
AU
3J9W_AA_15_AA_924_U_A
3j9w
U
A
1
9.145751
5.552937
3.725896
0
9.145751
3.795303
0
null
0
0
0
1
1
3lrr
C
A
7
null
D
A
9
null
9.3834
identity
non-interacting
non-bp
non-bs
3lrr_C_7_D_9_A_A
AA
3LRR_C_7_D_9_A_A
3lrr
A
A
1
12.963595
10.681053
9.69968
1.514777
12.963595
9.750519
0
null
0
0
0
1
1
2zjq
X
U
2,490
null
X
G
2,553
null
3.1395
identity
basepair
bp
non-bs
2zjq_X_2490_X_2553_U_G
GU
2ZJQ_X_2490_X_2553_U_G
2zjq
U
G
1
9.104092
12.494016
2.205353
0
9.104092
3.797834
0
null
0
0
0
1
1
2zjq
X
C
1,089
null
X
C
1,090
null
6.2227
identity
basepair
bp
non-bs
2zjq_X_1089_X_1090_C_C
CC
2ZJQ_X_1089_X_1090_C_C
2zjq
C
C
1
40.736559
7.06684
2.512857
0
40.736559
6.608654
0
null
0
0
0
1
1
4v50
CA
G
664
null
CA
G
741
null
3.1519
identity
basepair
bp
non-bs
4v50_CA_664_CA_741_G_G
GG
4V50_CA_664_CA_741_G_G
4v50
G
G
1
19.890925
13.267075
1.271096
0
19.890925
3.151856
1
122.591242
1
1
1
1
1
3j9w
AA
U
295
null
AA
A
296
null
3.1319
identity
basestacks
non-bp
bs
3j9w_AA_295_AA_296_U_A
AU
3J9W_AA_295_AA_296_U_A
3j9w
U
A
1
18.391123
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3.091559
0
18.391123
3.131952
2
96.940013
2
1
1
1
1
3j9w
AA
G
593
null
AA
G
594
null
2.8994
identity
basestacks
non-bp
bs
3j9w_AA_593_AA_594_G_G
GG
3J9W_AA_593_AA_594_G_G
3j9w
G
G
1
10.673919
5.518232
3.133501
0.853837
10.673919
3.710483
0
null
0
0
0
1
1
1yi2
0
A
857
null
0
A
874
null
3.2368
identity
basestacks
non-bp
bs
1yi2_0_857_0_874_A_A
AA
1YI2_0_857_0_874_A_A
1yi2
A
A
1
11.947823
8.978395
3.227786
0
11.947823
3.692236
0
null
0
0
0
1
1
6gqb
1
U
9
null
1
U
1,540
null
24.2747
identity
non-interacting
non-bp
non-bs
6gqb_1_9_1_1540_U_U
UU
6GQB_1_9_1_1540_U_U
6gqb
U
U
1
40.47203
25.421267
21.168487
0
40.47203
25.433431
0
null
0
0
0
1
1
2zjq
X
C
1,677
null
X
A
1,984
null
3.1058
identity
basestacks
non-bp
bs
2zjq_X_1677_X_1984_C_A
AC
2ZJQ_X_1677_X_1984_C_A
2zjq
C
A
1
11.387701
7.190242
2.997206
0.000016
11.387701
3.755741
0
null
0
0
0
1
1
2zjq
X
G
1,827
null
X
G
1,913
null
2.9964
identity
basepair
bp
non-bs
2zjq_X_1827_X_1913_G_G
GG
2ZJQ_X_1827_X_1913_G_G
2zjq
G
G
1
5.020535
7.85381
2.317716
0
5.020535
3.069801
3
125.877887
2
1
1
1
1
5zej
A
C
15
null
B
U
25
null
21.802
identity
non-interacting
non-bp
non-bs
5zej_A_15_B_25_C_U
CU
5ZEJ_A_15_B_25_C_U
5zej
C
U
1
26.574353
21.670448
19.20944
0
26.574353
24.057202
0
null
0
0
0
1
1
1yi2
0
G
13
null
0
U
2,652
null
20.5769
identity
non-interacting
non-bp
non-bs
1yi2_0_13_0_2652_G_U
GU
1YI2_0_13_0_2652_G_U
1yi2
G
U
1
13.406986
20.090903
2.742245
0
13.406986
23.561639
0
null
0
0
0
1
1
5no4
A
C
689
null
A
C
699
null
2.9
identity
basepair
bp
non-bs
5no4_A_689_A_699_C_C
CC
5NO4_A_689_A_699_C_C
5no4
C
C
1
10.987224
7.560939
2.287557
0
10.987224
3.89729
0
null
0
0
0
1
1
2zjq
X
C
1,791
null
X
U
1,810
null
3.0189
identity
basepair
bp
non-bs
2zjq_X_1791_X_1810_C_U
CU
2ZJQ_X_1791_X_1810_C_U
2zjq
C
U
1
10.950875
6.62525
2.984571
0
10.950875
3.654629
0
null
0
0
0
1
1
1yi2
0
C
141
null
0
A
144
null
3.2964
identity
basepair
bp
non-bs
1yi2_0_141_0_144_C_A
AC
1YI2_0_141_0_144_C_A
1yi2
C
A
1
63.507987
10.200945
2.68178
0
63.507987
3.296356
1
167.406812
1
1
1
1
1