pdb_id
string
chain1
string
res_name1
string
res_seq_num1
int64
ins_code1
string
chain2
string
res_name2
string
res_seq_num2
int64
ins_code2
string
min_distance
float64
symmetry_op
string
label_final
string
label_bp
string
label_bs
string
filename
string
pair_type
string
pair_id
string
pdb_key
string
base1_type
string
base2_type
string
geometry_ok_01
float64
base_plane_angle_deg
float64
c1p_c1p_distance_A
float64
stack_interplane_distance_A
float64
stack_overlap_area_A2
float64
stack_parallel_plane_angle_deg
float64
hbond_min_da_dist
float64
hbond_num_da_lt_3p5
float64
hbond_max_angle_for_da_lt_3p5
float64
hbond_num_full
float64
hbond_pattern_present_01
float64
hbond_angle_defined_01
float64
coords_found_01
int64
core_feature_found_01
int64
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C
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identity
basestacks
non-bp
bs
2zjq_X_245_X_438_C_G
CG
2ZJQ_X_245_X_438_C_G
2zjq
C
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2
92.646632
1
1
1
1
1
1yi2
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304
null
0
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346
null
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identity
basepair
bp
non-bs
1yi2_0_304_0_346_G_U
GU
1YI2_0_304_0_346_G_U
1yi2
G
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null
0
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1
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4ujc
C1
A
84
null
C1
A
150
null
3.5232
identity
basepair
bp
non-bs
4ujc_C1_84_C1_150_A_A
AA
4UJC_C1_84_C1_150_A_A
4ujc
A
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null
0
0
0
1
1
1yi2
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null
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identity
basepair
bp
non-bs
1yi2_0_832_0_833_U_G
GU
1YI2_0_832_0_833_U_G
1yi2
U
G
1
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0
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1
88.142057
0
0
1
1
1
2zjq
X
A
311
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C
329
null
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identity
basepair
bp
non-bs
2zjq_X_311_X_329_A_C
AC
2ZJQ_X_311_X_329_A_C
2zjq
A
C
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0
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1
3j9w
AA
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A
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identity
basepair
bp
non-bs
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AU
3J9W_AA_971_AA_1210_U_A
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null
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1yi2
0
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identity
basestacks
non-bp
bs
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AC
1YI2_0_1366_0_1367_C_A
1yi2
C
A
1
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0
null
0
0
0
1
1
5ibb
13
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2
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13
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308
null
23.116
identity
non-interacting
non-bp
non-bs
5ibb_13_2_13_308_U_C
CU
5IBB_13_2_13_308_U_C
5ibb
U
C
1
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null
0
0
0
1
1
6e1s
A
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27
null
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identity
non-interacting
non-bp
non-bs
6e1s_A_16_A_27_C_A
AC
6E1S_A_16_A_27_C_A
6e1s
C
A
1
10.66815
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0
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0
null
0
0
0
1
1
3j9w
BA
U
730
null
BA
C
842
null
3.1674
identity
basepair
bp
non-bs
3j9w_BA_730_BA_842_U_C
CU
3J9W_BA_730_BA_842_U_C
3j9w
U
C
1
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0
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null
0
0
0
1
1
2zjq
X
C
2,382
null
X
C
2,395
null
5.5345
identity
basestacks
non-bp
bs
2zjq_X_2382_X_2395_C_C
CC
2ZJQ_X_2382_X_2395_C_C
2zjq
C
C
1
21.575509
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0
null
0
0
0
1
1
1yi2
0
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122
null
0
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123
null
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identity
basestacks
non-bp
bs
1yi2_0_122_0_123_C_U
CU
1YI2_0_122_0_123_C_U
1yi2
C
U
1
9.872817
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3.172301
1
110.914733
1
1
1
1
1
5no4
A
U
294
null
A
U
610
null
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identity
basepair
bp
non-bs
5no4_A_294_A_610_U_U
UU
5NO4_A_294_A_610_U_U
5no4
U
U
1
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null
0
0
0
1
1
4v50
AA
G
69
null
AA
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100
null
2.8858
identity
basepair
bp
non-bs
4v50_AA_69_AA_100_G_G
GG
4V50_AA_69_AA_100_G_G
4v50
G
G
1
15.970746
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0.754877
0
15.970746
2.8858
2
151.442891
2
1
1
1
1
1nlc
A
A
16
null
B
A
14
null
15.6743
identity
non-interacting
non-bp
non-bs
1nlc_A_16_B_14_A_A
AA
1NLC_A_16_B_14_A_A
1nlc
A
A
1
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0
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0
null
0
0
0
1
1
1yi2
0
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null
0
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null
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identity
basepair
bp
non-bs
1yi2_0_1515_0_1671_A_U
AU
1YI2_0_1515_0_1671_A_U
1yi2
A
U
1
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0
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2
118.659461
2
1
1
1
1
6ymj
A
C
15
null
B
G
47
null
10.6586
identity
non-interacting
non-bp
non-bs
6ymj_A_15_B_47_C_G
CG
6YMJ_A_15_B_47_C_G
6ymj
C
G
1
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0
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0
null
0
0
0
1
1
3j9w
AA
G
719
null
AA
G
720
null
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identity
basestacks
non-bp
bs
3j9w_AA_719_AA_720_G_G
GG
3J9W_AA_719_AA_720_G_G
3j9w
G
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1
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1
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1
1
1
1
1
1yi2
0
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null
0
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2,407
null
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identity
basepair
bp
non-bs
1yi2_0_735_0_2407_C_G
CG
1YI2_0_735_0_2407_C_G
1yi2
C
G
1
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83.427978
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null
0
0
0
1
1
1yi2
0
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433
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identity
basestacks
non-bp
bs
1yi2_0_433_0_434_C_U
CU
1YI2_0_433_0_434_C_U
1yi2
C
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1
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1
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1
1
1
1
1
4oq9
P
A
161
null
4
U
195
null
19.1846
identity
non-interacting
non-bp
non-bs
4oq9_P_161_4_195_A_U
AU
4OQ9_P_161_4_195_A_U
4oq9
A
U
1
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22.216766
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0
64.137506
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0
null
0
0
0
1
1
5w1h
B
C
-21
null
B
A
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null
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identity
non-interacting
non-bp
non-bs
5w1h_B_-21_B_-5_C_A
AC
5W1H_B_-21_B_-5_C_A
5w1h
C
A
1
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6.068904
0
81.231351
10.241848
0
null
0
0
0
1
1
1yi2
0
A
1,978
null
0
U
2,008
null
4.326
identity
basepair
bp
non-bs
1yi2_0_1978_0_2008_A_U
AU
1YI2_0_1978_0_2008_A_U
1yi2
A
U
1
36.255703
8.333324
2.246003
0
36.255703
5.986605
0
null
0
0
0
1
1
2zjq
X
A
163
null
X
G
188
null
3.0859
identity
basestacks
non-bp
bs
2zjq_X_163_X_188_A_G
AG
2ZJQ_X_163_X_188_A_G
2zjq
A
G
1
8.22664
7.217127
3.157685
0.22862
8.22664
3.171729
1
76.924596
0
0
1
1
1
5mga
B
U
-17
null
B
G
-3
null
4.7824
identity
non-interacting
non-bp
non-bs
5mga_B_-17_B_-3_U_G
GU
5MGA_B_-17_B_-3_U_G
5mga
U
G
1
64.54248
13.160738
2.834283
0
64.54248
6.057127
0
null
0
0
0
1
1
3j9w
AA
A
902
null
AA
G
916
null
2.8001
identity
basepair
bp
non-bs
3j9w_AA_902_AA_916_A_G
AG
3J9W_AA_902_AA_916_A_G
3j9w
A
G
1
7.260298
9.81012
0.880736
0
7.260298
2.80007
2
152.846724
2
1
1
1
1
1yi2
0
C
571
null
0
G
572
null
3.2893
identity
basestacks
non-bp
bs
1yi2_0_571_0_572_C_G
CG
1YI2_0_571_0_572_C_G
1yi2
C
G
1
12.995438
5.185334
3.467045
1.852681
12.995438
3.447852
1
110.666682
1
1
1
1
1
1yi2
0
A
2,783
null
0
A
2,792
null
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identity
basestacks
non-bp
bs
1yi2_0_2783_0_2792_A_A
AA
1YI2_0_2783_0_2792_A_A
1yi2
A
A
1
9.830005
7.739224
3.515687
0.06915
9.830005
3.986315
0
null
0
0
0
1
1
3j9w
AA
G
46
null
AA
G
407
null
3.1165
identity
basestacks
non-bp
bs
3j9w_AA_46_AA_407_G_G
GG
3J9W_AA_46_AA_407_G_G
3j9w
G
G
1
1.476274
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3.123424
0
1.476274
3.322233
4
111.831716
1
1
1
1
1
1yi2
0
A
1,381
null
0
G
1,401
null
3.1671
identity
basepair
bp
non-bs
1yi2_0_1381_0_1401_A_G
AG
1YI2_0_1381_0_1401_A_G
1yi2
A
G
1
59.900894
8.387884
2.969051
0
59.900894
3.167151
1
115.266814
1
1
1
1
1
4x62
A
G
6
null
A
G
301
null
16.0132
identity
non-interacting
non-bp
non-bs
4x62_A_6_A_301_G_G
GG
4X62_A_6_A_301_G_G
4x62
G
G
1
64.769298
16.340497
10.361659
0
64.769298
17.488803
0
null
0
0
0
1
1
4v50
DB
C
2,452
null
DB
U
2,504
null
3.394
identity
basepair
bp
non-bs
4v50_DB_2452_DB_2504_C_U
CU
4V50_DB_2452_DB_2504_C_U
4v50
C
U
1
31.12376
9.003151
0.539211
0
31.12376
3.393996
2
120.257091
2
1
1
1
1
5no4
A
U
1,345
null
A
U
1,376
null
2.5305
identity
basepair
bp
non-bs
5no4_A_1345_A_1376_U_U
UU
5NO4_A_1345_A_1376_U_U
5no4
U
U
1
14.526843
8.30661
0.583699
0
14.526843
2.530519
2
106.088423
2
1
1
1
1
1yi2
0
C
101
null
0
A
102
null
3.0803
identity
basepair
bp
non-bs
1yi2_0_101_0_102_C_A
AC
1YI2_0_101_0_102_C_A
1yi2
C
A
1
7.437309
5.640076
2.897013
0
7.437309
3.690839
0
null
0
0
0
1
1
1yi2
0
G
958
null
0
C
962
null
3.5734
identity
basepair
bp
non-bs
1yi2_0_958_0_962_G_C
CG
1YI2_0_958_0_962_G_C
1yi2
G
C
1
34.256211
12.471064
2.656997
0
34.256211
5.355197
0
null
0
0
0
1
1
3j9w
AA
G
597
null
AA
A
762
null
2.9216
identity
basestacks
non-bp
bs
3j9w_AA_597_AA_762_G_A
AG
3J9W_AA_597_AA_762_G_A
3j9w
G
A
1
9.233131
7.270604
3.346529
2.823867
9.233131
2.921663
2
104.36712
2
1
1
1
1
3j9w
BA
C
532
null
BA
C
533
null
3.0857
identity
basestacks
non-bp
bs
3j9w_BA_532_BA_533_C_C
CC
3J9W_BA_532_BA_533_C_C
3j9w
C
C
1
14.762163
5.636722
3.365214
0.021057
14.762163
3.632227
0
null
0
0
0
1
1
3j9w
AA
G
1,321
null
AA
U
1,322
null
3.1878
identity
basestacks
non-bp
bs
3j9w_AA_1321_AA_1322_G_U
GU
3J9W_AA_1321_AA_1322_G_U
3j9w
G
U
1
8.31045
5.606877
3.344764
2.142078
8.31045
3.400971
2
117.969964
1
1
1
1
1
3j9w
AA
G
30
null
AA
C
565
null
2.9648
identity
basestacks
non-bp
bs
3j9w_AA_30_AA_565_G_C
CG
3J9W_AA_30_AA_565_G_C
3j9w
G
C
1
14.588536
8.461853
2.522697
0
14.588536
2.964826
3
106.921209
2
1
1
1
1
4v50
BB
U
2,086
null
BB
U
2,233
null
2.7567
identity
basepair
bp
non-bs
4v50_BB_2086_BB_2233_U_U
UU
4V50_BB_2086_BB_2233_U_U
4v50
U
U
1
17.557258
8.791424
0.807024
0
17.557258
2.756664
2
122.534178
2
1
1
1
1
4lg2
J
G
4
null
J
C
6
null
5.5735
identity
non-interacting
non-bp
non-bs
4lg2_J_4_J_6_G_C
CG
4LG2_J_4_J_6_G_C
4lg2
G
C
1
25.900666
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0
25.900666
5.57349
0
null
0
0
0
1
1
6wua
a
C
952
null
a
C
1,357
null
12.236
identity
non-interacting
non-bp
non-bs
6wua_a_952_a_1357_C_C
CC
6WUA_A_952_A_1357_C_C
6wua
C
C
1
48.327571
14.785689
9.888722
0
48.327571
14.253403
0
null
0
0
0
1
1
3j9w
BA
A
1,074
null
BA
A
1,172
null
3.3448
identity
basepair
bp
non-bs
3j9w_BA_1074_BA_1172_A_A
AA
3J9W_BA_1074_BA_1172_A_A
3j9w
A
A
1
43.024069
10.715132
1.995415
0
43.024069
3.344835
1
134.509065
1
1
1
1
1
1yi2
0
C
937
null
0
G
938
null
3.1072
identity
basestacks
non-bp
bs
1yi2_0_937_0_938_C_G
CG
1YI2_0_937_0_938_C_G
1yi2
C
G
1
25.970224
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3.885726
3.132202
25.970224
3.485736
1
74.312192
0
0
1
1
1
1yi2
0
C
18
null
0
G
525
null
2.6991
identity
basepair
bp
non-bs
1yi2_0_18_0_525_C_G
CG
1YI2_0_18_0_525_C_G
1yi2
C
G
1
19.077286
10.553226
0.190741
0
19.077286
2.699139
4
129.957991
4
1
1
1
1
6e1s
A
A
10
null
A
A
27
null
15.2437
identity
non-interacting
non-bp
non-bs
6e1s_A_10_A_27_A_A
AA
6E1S_A_10_A_27_A_A
6e1s
A
A
1
11.210348
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13.297574
0
11.210348
15.323875
0
null
0
0
0
1
1
1yi2
0
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2,567
null
0
G
2,700
null
2.8688
identity
basepair
bp
non-bs
1yi2_0_2567_0_2700_G_G
GG
1YI2_0_2567_0_2700_G_G
1yi2
G
G
1
32.221489
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1.866837
0
32.221489
2.868806
2
124.112047
2
1
1
1
1
1yi2
0
C
1,377
null
0
G
1,723
null
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identity
basestacks
non-bp
bs
1yi2_0_1377_0_1723_C_G
CG
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1
1
1
1
1
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identity
basestacks
non-bp
bs
2zjq_X_1319_X_1320_C_A
AC
2ZJQ_X_1319_X_1320_C_A
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C
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1
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0
1
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3j9w
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null
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identity
basestacks
non-bp
bs
3j9w_AA_114_AA_322_A_C
AC
3J9W_AA_114_AA_322_A_C
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A
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identity
basestacks
non-bp
bs
2zjq_X_1700_X_1701_C_C
CC
2ZJQ_X_1700_X_1701_C_C
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C
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null
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0
1
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1yi2
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identity
basestacks
non-bp
bs
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CU
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1
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1
1
1
1
1
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identity
basepair
bp
non-bs
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1
1
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identity
basestacks
non-bp
bs
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AG
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identity
basepair
bp
non-bs
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AU
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129.863234
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1
1
1
1
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identity
basepair
bp
non-bs
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AA
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1
1
1
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identity
basestacks
non-bp
bs
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GU
3J9W_AA_187_AA_188_U_G
3j9w
U
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null
0
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0
1
1
4v50
BB
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null
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identity
basestacks
non-bp
bs
4v50_BB_1018_BB_1019_U_U
UU
4V50_BB_1018_BB_1019_U_U
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1
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0
13.716234
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1
127.912547
1
1
1
1
1
1yi2
0
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null
0
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null
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identity
basestacks
non-bp
bs
1yi2_0_1452_0_1676_G_G
GG
1YI2_0_1452_0_1676_G_G
1yi2
G
G
1
8.5029
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3.32139
0.447372
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1
78.351151
0
0
1
1
1
4lel
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7
null
QA
A
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null
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identity
non-interacting
non-bp
non-bs
4lel_QA_7_QA_26_G_A
AG
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G
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1
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null
0
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0
1
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3j9w
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null
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identity
basepair
bp
non-bs
3j9w_AA_380_AA_382_C_A
AC
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C
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1
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1
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1
1
1
1
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identity
non-interacting
non-bp
non-bs
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AU
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null
0
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0
1
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3j9w
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null
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identity
basepair
bp
non-bs
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CG
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1
1
1
1
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null
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identity
basestacks
non-bp
bs
1yi2_0_2736_0_2737_U_C
CU
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1
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1
1
1
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identity
basepair
bp
non-bs
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1
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1
1
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identity
basestacks
non-bp
bs
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1
1
1
1yi2
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null
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identity
basestacks
non-bp
bs
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CU
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0
0
1
1
1
1yi2
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null
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identity
basepair
bp
non-bs
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GU
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null
0
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0
1
1
2zjq
X
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null
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null
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identity
basestacks
non-bp
bs
2zjq_X_588_X_589_G_C
CG
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2zjq
G
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1
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1
109.890923
1
1
1
1
1
2zjq
X
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null
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null
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identity
basestacks
non-bp
bs
2zjq_X_538_X_2025_A_A
AA
2ZJQ_X_538_X_2025_A_A
2zjq
A
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1
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null
0
0
0
1
1
2zjq
X
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null
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null
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identity
basepair
bp
non-bs
2zjq_X_834_X_983_A_G
AG
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2zjq
A
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138.35091
2
1
1
1
1
1yi2
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null
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null
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identity
basepair
bp
non-bs
1yi2_0_540_0_617_A_C
AC
1YI2_0_540_0_617_A_C
1yi2
A
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1
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null
0
0
0
1
1
2zjq
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null
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null
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identity
basepair
bp
non-bs
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AC
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2zjq
A
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1
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1
1
1
1
3j9w
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identity
basestacks
non-bp
bs
3j9w_AA_478_AA_479_G_G
GG
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G
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1
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103.772573
1
1
1
1
1
1yi2
0
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null
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identity
basestacks
non-bp
bs
1yi2_0_2265_0_2266_U_A
AU
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U
A
1
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0
1
1
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AA
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null
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identity
basepair
bp
non-bs
3j9w_AA_870_AA_879_A_A
AA
3J9W_AA_870_AA_879_A_A
3j9w
A
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null
0
0
0
1
1
1yi2
0
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null
0
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1,205
null
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identity
basepair
bp
non-bs
1yi2_0_1193_0_1205_A_U
AU
1YI2_0_1193_0_1205_A_U
1yi2
A
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1
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null
0
0
0
1
1
2zjq
X
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null
X
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null
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identity
basepair
bp
non-bs
2zjq_X_1099_X_1100_A_G
AG
2ZJQ_X_1099_X_1100_A_G
2zjq
A
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1
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null
0
0
0
1
1
2zjq
X
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null
X
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null
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identity
basestacks
non-bp
bs
2zjq_X_1926_X_1928_U_G
GU
2ZJQ_X_1926_X_1928_U_G
2zjq
U
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1
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null
0
0
0
1
1
2zjq
X
G
1,494
null
X
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1,495
null
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identity
basestacks
non-bp
bs
2zjq_X_1494_X_1495_G_G
GG
2ZJQ_X_1494_X_1495_G_G
2zjq
G
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1
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3.553613
0
null
0
0
0
1
1
3j9w
BA
C
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null
BA
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null
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identity
basestacks
non-bp
bs
3j9w_BA_399_BA_400_C_U
CU
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3j9w
C
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1
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null
0
0
0
1
1
4lf5
A
C
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810
null
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identity
basepair
bp
non-bs
4lf5_A_770_A_810_C_C
CC
4LF5_A_770_A_810_C_C
4lf5
C
C
1
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null
0
0
0
1
1
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BA
A
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null
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null
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identity
basepair
bp
non-bs
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AC
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3j9w
A
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1
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null
0
0
0
1
1
5ew4
A
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null
A
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14
null
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identity
non-interacting
non-bp
non-bs
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CC
5EW4_A_7_A_14_C_C
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C
C
1
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null
0
0
0
1
1
5ibb
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null
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identity
non-interacting
non-bp
non-bs
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GU
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U
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1
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null
0
0
0
1
1
5ibb
13
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2
null
13
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4
null
13.6055
identity
non-interacting
non-bp
non-bs
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UU
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5ibb
U
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1
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null
0
0
0
1
1
4tzy
X
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null
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identity
basepair
bp
non-bs
4tzy_X_47_X_51_U_U
UU
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U
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1
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1
1
1
1
1
1yi2
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null
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identity
basestacks
non-bp
bs
1yi2_0_682_0_683_A_G
AG
1YI2_0_682_0_683_A_G
1yi2
A
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1
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0
null
0
0
0
1
1
2zjq
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null
X
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1,587
null
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identity
basepair
bp
non-bs
2zjq_X_1364_X_1587_C_A
AC
2ZJQ_X_1364_X_1587_C_A
2zjq
C
A
1
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59.56789
7.165413
0
null
0
0
0
1
1
4lf5
A
C
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null
A
U
367
null
3.8581
identity
basepair
bp
non-bs
4lf5_A_366_A_367_C_U
CU
4LF5_A_366_A_367_C_U
4lf5
C
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1
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0
null
0
0
0
1
1
3j9w
BA
U
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null
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C
686
null
2.9292
identity
basestacks
non-bp
bs
3j9w_BA_685_BA_686_U_C
CU
3J9W_BA_685_BA_686_U_C
3j9w
U
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1
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2
104.077382
2
1
1
1
1
1yi2
0
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null
0
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null
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identity
basepair
bp
non-bs
1yi2_0_547_0_608_A_A
AA
1YI2_0_547_0_608_A_A
1yi2
A
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1
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0
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0
null
0
0
0
1
1
2zjq
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null
X
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2,211
null
2.8284
identity
basepair
bp
non-bs
2zjq_X_2070_X_2211_G_U
GU
2ZJQ_X_2070_X_2211_G_U
2zjq
G
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1
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0.175376
0
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2
106.457457
2
1
1
1
1
4lg2
E
G
4
null
E
C
6
null
6.16
identity
non-interacting
non-bp
non-bs
4lg2_E_4_E_6_G_C
CG
4LG2_E_4_E_6_G_C
4lg2
G
C
1
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6.159978
0
null
0
0
0
1
1
4x62
A
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A
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null
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identity
non-interacting
non-bp
non-bs
4x62_A_10_A_506_A_G
AG
4X62_A_10_A_506_A_G
4x62
A
G
1
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0
35.696205
7.812942
0
null
0
0
0
1
1
6ff7
2
G
4
null
2
G
12
null
23.1139
identity
non-interacting
non-bp
non-bs
6ff7_2_4_2_12_G_G
GG
6FF7_2_4_2_12_G_G
6ff7
G
G
1
23.650175
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0
23.650175
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0
null
0
0
0
1
1
2zjq
X
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null
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2,350
null
2.7091
identity
basepair
bp
non-bs
2zjq_X_2324_X_2350_G_G
GG
2ZJQ_X_2324_X_2350_G_G
2zjq
G
G
1
28.733904
11.260998
1.392405
0
28.733904
2.709065
3
147.691933
2
1
1
1
1
3ov7
D
C
20
null
D
C
21
null
3.0035
identity
basestacks
non-bp
bs
3ov7_D_20_D_21_C_C
CC
3OV7_D_20_D_21_C_C
3ov7
C
C
1
32.359019
5.569366
3.257023
0.161749
32.359019
3.888529
0
null
0
0
0
1
1
4v50
BB
U
2,783
null
BB
U
2,784
null
3.2973
identity
basestacks
non-bp
bs
4v50_BB_2783_BB_2784_U_U
UU
4V50_BB_2783_BB_2784_U_U
4v50
U
U
1
1.196863
5.620718
3.313195
0
1.196863
3.636625
0
null
0
0
0
1
1
2zjq
X
U
1,182
null
X
C
1,183
null
3.1736
identity
basestacks
non-bp
bs
2zjq_X_1182_X_1183_U_C
CU
2ZJQ_X_1182_X_1183_U_C
2zjq
U
C
1
11.090748
4.606542
3.230785
0.719759
11.090748
3.236639
2
99.499756
2
1
1
1
1