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hongliangduan/Transformer-model-for-prediction-in-low-chemical-data-regimes
trainer_lib.py
T2TExperiment.continuous_decode_on_train_data
continuous_decode_on_train_data
Decode from dataset on new checkpoint.
[ "Decode", "from", "dataset", "on", "new", "checkpoint." ]
def continuous_decode_on_train_data(self): for _ in next_checkpoint(self._hparams.model_dir): self.decode(dataset_split=tf.estimator.ModeKeys.TRAIN)
['def', 'continuous_decode_on_train_data(self):', 'for', '_', 'in', 'next_checkpoint(self._hparams.model_dir):', 'self.decode(dataset_split=tf.estimator.ModeKeys.TRAIN)']
966,233
hongliangduan/Transformer-model-for-prediction-in-low-chemical-data-regimes
video_metrics.py
compute_one_decoding_video_metrics
compute_one_decoding_video_metrics
Computes the average of all the metric for one decoding.
[ "Computes", "the", "average", "of", "all", "the", "metric", "for", "one", "decoding." ]
def compute_one_decoding_video_metrics(iterator, feed_dict, num_videos): (output, target) = iterator.get_next() metrics_dict = compute_metrics(output, target) (metrics_names, metrics) = zip(*six.iteritems(metrics_dict)) (means, update_ops) = tf.metrics.mean_tensor(metrics) with tf.Session() as sess:...
['def', 'compute_one_decoding_video_metrics(iterator,', 'feed_dict,', 'num_videos):', '(output,', 'target)', '=', 'iterator.get_next()', 'metrics_dict', '=', 'compute_metrics(output,', 'target)', '(metrics_names,', 'metrics)', '=', 'zip(*six.iteritems(metrics_dict))', '(means,', 'update_ops)', '=', 'tf.metrics.mean_ten...
966,238
hongliangduan/Transformer-model-for-prediction-in-low-chemical-data-regimes
video_metrics.py
compute_all_metrics_statistics
compute_all_metrics_statistics
Computes statistics of metrics across multiple decodings.
[ "Computes", "statistics", "of", "metrics", "across", "multiple", "decodings." ]
def compute_all_metrics_statistics(all_results): statistics = {} for key in all_results[0].keys(): values = [result[key] for result in all_results] values = np.vstack(values) statistics[key + '_MEAN'] = np.mean(values, axis=0) statistics[key + '_STD'] = np.std(values, axis=0) ...
['def', 'compute_all_metrics_statistics(all_results):', 'statistics', '=', '{}', 'for', 'key', 'in', 'all_results[0].keys():', 'values', '=', '[result[key]', 'for', 'result', 'in', 'all_results]', 'values', '=', 'np.vstack(values)', 'statistics[key', '+', "'_MEAN']", '=', 'np.mean(values,', 'axis=0)', 'statistics[key',...
966,239
hongliangduan/Transformer-model-for-prediction-in-low-chemical-data-regimes
video_metrics.py
compute_and_save_video_metrics
compute_and_save_video_metrics
Compute and saves the video metrics.
[ "Compute", "and", "saves", "the", "video", "metrics." ]
def compute_and_save_video_metrics(output_dirs, problem_name, video_length, frame_shape): (statistics, all_results) = compute_video_metrics_from_png_files(output_dirs, problem_name, video_length, frame_shape) for (results, output_dir) in zip(all_results, output_dirs): save_results(results, output_dir, p...
['def', 'compute_and_save_video_metrics(output_dirs,', 'problem_name,', 'video_length,', 'frame_shape):', '(statistics,', 'all_results)', '=', 'compute_video_metrics_from_png_files(output_dirs,', 'problem_name,', 'video_length,', 'frame_shape)', 'for', '(results,', 'output_dir)', 'in', 'zip(all_results,', 'output_dirs)...
966,241
hongliangduan/Transformer-model-for-prediction-in-low-chemical-data-regimes
yellowfin.py
YellowFinOptimizer.apply_gradients
apply_gradients
Applying gradients and tune hyperparams with YellowFin.
[ "Applying", "gradients", "and", "tune", "hyperparams", "with", "YellowFin." ]
def apply_gradients(self, grads_and_vars, global_step=None, name=None): (self._grad, self._vars) = zip(*[(g, t) for (g, t) in grads_and_vars if g is not None]) with tf.variable_scope('apply_updates'): if self._clip_thresh_var is not None: (self._grad, _) = tf.clip_by_global_norm(self._grad, ...
['def', 'apply_gradients(self,', 'grads_and_vars,', 'global_step=None,', 'name=None):', '(self._grad,', 'self._vars)', '=', 'zip(*[(g,', 't)', 'for', '(g,', 't)', 'in', 'grads_and_vars', 'if', 'g', 'is', 'not', 'None])', 'with', "tf.variable_scope('apply_updates'):", 'if', 'self._clip_thresh_var', 'is', 'not', 'None:',...
966,242
hongliangduan/Transformer-model-for-prediction-in-low-chemical-data-regimes
series.py
Series.iteritems
iteritems
Lazily iterate over (index, value) tuples.
[ "Lazily", "iterate", "over", "(index,", "value)", "tuples." ]
def iteritems(self): return zip(iter(self.index), iter(self))
['def', 'iteritems(self):', 'return', 'zip(iter(self.index),', 'iter(self))']
967,278
hongliangduan/Transformer-model-for-prediction-in-low-chemical-data-regimes
range.py
RangeIndex.from_range
from_range
Create RangeIndex from a range (py3), or xrange (py2) object.
[ "Create", "RangeIndex", "from", "a", "range", "(py3),", "or", "xrange", "(py2)", "object." ]
def from_range(cls, data, name=None, dtype=None, **kwargs): if not isinstance(data, range): raise TypeError('{0}(...) must be called with object coercible to a range, {1} was passed'.format(cls.__name__, repr(data))) (start, stop, step) = get_range_parameters(data) return RangeIndex(start, stop, ste...
['def', 'from_range(cls,', 'data,', 'name=None,', 'dtype=None,', '**kwargs):', 'if', 'not', 'isinstance(data,', 'range):', 'raise', "TypeError('{0}(...)", 'must', 'be', 'called', 'with', 'object', 'coercible', 'to', 'a', 'range,', '{1}', 'was', "passed'.format(cls.__name__,", 'repr(data)))', '(start,', 'stop,', 'step)'...
967,764
huawei-noah/xingtian
record.py
ReportRecord.checkpoint_path
checkpoint_path
Set checkpoint_path and parse value into dict.
[ "Set", "checkpoint_path", "and", "parse", "value", "into", "dict." ]
def checkpoint_path(self, value): self._checkpoint_path = value
['def', 'checkpoint_path(self,', 'value):', 'self._checkpoint_path', '=', 'value']
968,343
huawei-noah/xingtian
record.py
ReportRecord.model_path
model_path
Set model_path and parse value into dict.
[ "Set", "model_path", "and", "parse", "value", "into", "dict." ]
def model_path(self, value): self._model_path = value
['def', 'model_path(self,', 'value):', 'self._model_path', '=', 'value']
968,344
huawei-noah/xingtian
record.py
ReportRecord.weights_file
weights_file
Set weights_file and parse value int dict.
[ "Set", "weights_file", "and", "parse", "value", "int", "dict." ]
def weights_file(self, value): self._weights_file = value
['def', 'weights_file(self,', 'value):', 'self._weights_file', '=', 'value']
968,345
huawei-noah/xingtian
record.py
ReportRecord.load_dict
load_dict
Load values from dict.
[ "Load", "values", "from", "dict." ]
def load_dict(self, src_dic): if src_dic: for (key, value) in src_dic.items(): setattr(self, key, value) return self
['def', 'load_dict(self,', 'src_dic):', 'if', 'src_dic:', 'for', '(key,', 'value)', 'in', 'src_dic.items():', 'setattr(self,', 'key,', 'value)', 'return', 'self']
968,348
huawei-noah/xingtian
record.py
ReportRecord.from_sample
from_sample
Load values from sample.
[ "Load", "values", "from", "sample." ]
def from_sample(self, sample, desc=None): if isinstance(sample, tuple): sample = dict(worker_id=sample[0], desc=sample[1]) self.load_dict(sample) if desc: self.desc = desc return self
['def', 'from_sample(self,', 'sample,', 'desc=None):', 'if', 'isinstance(sample,', 'tuple):', 'sample', '=', 'dict(worker_id=sample[0],', 'desc=sample[1])', 'self.load_dict(sample)', 'if', 'desc:', 'self.desc', '=', 'desc', 'return', 'self']
968,349
huawei-noah/xingtian
report_client.py
ReportClient.broadcast
broadcast
Broadcast one record to Shared Memory.
[ "Broadcast", "one", "record", "to", "Shared", "Memory." ]
def broadcast(cls, record): if not record: logging.warning('Broadcast Record is None.') return ShareMemory('{}.{}'.format(record.step_name, record.worker_id)).put(record.serialize()) cls._save_worker_record(record.serialize())
['def', 'broadcast(cls,', 'record):', 'if', 'not', 'record:', "logging.warning('Broadcast", 'Record', 'is', "None.')", 'return', "ShareMemory('{}.{}'.format(record.step_name,", 'record.worker_id)).put(record.serialize())', 'cls._save_worker_record(record.serialize())']
968,351
huawei-noah/xingtian
report_server.py
ReportServer.add_watched_var
add_watched_var
Add variable to ReportServer.
[ "Add", "variable", "to", "ReportServer." ]
def add_watched_var(cls, step_name, worker_id): cls.__variables__.add('{}.{}'.format(step_name, worker_id))
['def', 'add_watched_var(cls,', 'step_name,', 'worker_id):', "cls.__variables__.add('{}.{}'.format(step_name,", 'worker_id))']
968,354
huawei-noah/xingtian
report_server.py
ReportServer.remove_watched_var
remove_watched_var
Remove variable from ReportServer.
[ "Remove", "variable", "from", "ReportServer." ]
def remove_watched_var(cls, step_name, worker_id): key = '{}.{}'.format(step_name, worker_id) if key in cls.__variables__: cls.__variables__.remove(key)
['def', 'remove_watched_var(cls,', 'step_name,', 'worker_id):', 'key', '=', "'{}.{}'.format(step_name,", 'worker_id)', 'if', 'key', 'in', 'cls.__variables__:', 'cls.__variables__.remove(key)']
968,355
huawei-noah/xingtian
report_server.py
ReportServer.print_best
print_best
Print best performance and desc.
[ "Print", "best", "performance", "and", "desc." ]
def print_best(self, step_name): records = self.get_pareto_front_records(step_name) return [dict(worker_id=record.worker_id, performance=record._performance, desc=record.desc) for record in records]
['def', 'print_best(self,', 'step_name):', 'records', '=', 'self.get_pareto_front_records(step_name)', 'return', '[dict(worker_id=record.worker_id,', 'performance=record._performance,', 'desc=record.desc)', 'for', 'record', 'in', 'records]']
968,356
huawei-noah/xingtian
report_server.py
ReportServer.get_pareto_front_records
get_pareto_front_records
Get Pareto Front Records.
[ "Get", "Pareto", "Front", "Records." ]
def get_pareto_front_records(self, step_name=None, nums=None, selected_key=None): if not step_name: step_name = General.step_name records = self.all_records if selected_key is not None: new_records = [] selected_key.sort() for record in records: record._objective_...
['def', 'get_pareto_front_records(self,', 'step_name=None,', 'nums=None,', 'selected_key=None):', 'if', 'not', 'step_name:', 'step_name', '=', 'General.step_name', 'records', '=', 'self.all_records', 'if', 'selected_key', 'is', 'not', 'None:', 'new_records', '=', '[]', 'selected_key.sort()', 'for', 'record', 'in', 'rec...
968,358
huawei-noah/xingtian
report_server.py
ReportServer.restore
restore
Transfer cvs_file to records.
[ "Transfer", "cvs_file", "to", "records." ]
def restore(cls): step_path = TaskOps().step_path _file = os.path.join(step_path, '.reports') if os.path.exists(_file): with open(_file, 'rb') as f: data = pickle.load(f) cls._hist_records = data[0] cls.__instances__ = data[1]
['def', 'restore(cls):', 'step_path', '=', 'TaskOps().step_path', '_file', '=', 'os.path.join(step_path,', "'.reports')", 'if', 'os.path.exists(_file):', 'with', 'open(_file,', "'rb')", 'as', 'f:', 'data', '=', 'pickle.load(f)', 'cls._hist_records', '=', 'data[0]', 'cls.__instances__', '=', 'data[1]']
968,359
huawei-noah/xingtian
report_server.py
ReportServer.backup_output_path
backup_output_path
Back up output to local path.
[ "Back", "up", "output", "to", "local", "path." ]
def backup_output_path(self): backup_path = TaskOps().backup_base_path if backup_path is None: return FileOps.copy_folder(TaskOps().local_output_path, backup_path)
['def', 'backup_output_path(self):', 'backup_path', '=', 'TaskOps().backup_base_path', 'if', 'backup_path', 'is', 'None:', 'return', 'FileOps.copy_folder(TaskOps().local_output_path,', 'backup_path)']
968,360
huawei-noah/xingtian
report_server.py
ReportServer.output_step_all_records
output_step_all_records
Output step all records.
[ "Output", "step", "all", "records." ]
def output_step_all_records(self, step_name, desc=True, weights_file=True, performance=True): records = self.all_records logging.debug('All records in report, records={}'.format(self.all_records)) records = list(filter(lambda x: x.step_name == step_name, records)) logging.debug('Filter step records, rec...
['def', 'output_step_all_records(self,', 'step_name,', 'desc=True,', 'weights_file=True,', 'performance=True):', 'records', '=', 'self.all_records', "logging.debug('All", 'records', 'in', 'report,', "records={}'.format(self.all_records))", 'records', '=', 'list(filter(lambda', 'x:', 'x.step_name', '==', 'step_name,', '...
968,361
huawei-noah/xingtian
report_server.py
ReportServer.dump
dump
Dump report to file.
[ "Dump", "report", "to", "file." ]
def dump(self): try: _file = FileOps.join_path(TaskOps().step_path, 'reports.csv') FileOps.make_base_dir(_file) data = self.all_records data_dict = {} for step in data: step_data = step.serialize().items() for (k, v) in step_data: if k ...
['def', 'dump(self):', 'try:', '_file', '=', 'FileOps.join_path(TaskOps().step_path,', "'reports.csv')", 'FileOps.make_base_dir(_file)', 'data', '=', 'self.all_records', 'data_dict', '=', '{}', 'for', 'step', 'in', 'data:', 'step_data', '=', 'step.serialize().items()', 'for', '(k,', 'v)', 'in', 'step_data:', 'if', 'k',...
968,362
huawei-noah/xingtian
report_server.py
ReportServer.load_records_from_model_folder
load_records_from_model_folder
Transfer json_file to records.
[ "Transfer", "json_file", "to", "records." ]
def load_records_from_model_folder(cls, model_folder): if not model_folder or not os.path.exists(model_folder): logging.error('Failed to load records from model folder, folder={}'.format(model_folder)) return [] records = [] pattern = FileOps.join_path(model_folder, 'desc_*.json') files ...
['def', 'load_records_from_model_folder(cls,', 'model_folder):', 'if', 'not', 'model_folder', 'or', 'not', 'os.path.exists(model_folder):', "logging.error('Failed", 'to', 'load', 'records', 'from', 'model', 'folder,', "folder={}'.format(model_folder))", 'return', '[]', 'records', '=', '[]', 'pattern', '=', 'FileOps.joi...
968,363
huawei-noah/xingtian
share_memory.py
ClusterShareMemory.get
get
Get value from shared data.
[ "Get", "value", "from", "shared", "data." ]
def get(self): return ast.literal_eval(self.var.get(timeout=2))
['def', 'get(self):', 'return', 'ast.literal_eval(self.var.get(timeout=2))']
968,365
huawei-noah/xingtian
deserialize.py
pickle_worker
pickle_worker
Pickle worker to file.
[ "Pickle", "worker", "to", "file." ]
def pickle_worker(worker, id): config_file = os.path.join(worker.get_local_worker_path(), '.{0}.c.pkl'.format(id)) worker_config = _get_worker_config(worker) with open(config_file, 'wb') as f: pickle.dump(worker_config, f) worker_file = os.path.join(worker.get_local_worker_path(), '.{0}.w.pkl'.f...
['def', 'pickle_worker(worker,', 'id):', 'config_file', '=', 'os.path.join(worker.get_local_worker_path(),', "'.{0}.c.pkl'.format(id))", 'worker_config', '=', '_get_worker_config(worker)', 'with', 'open(config_file,', "'wb')", 'as', 'f:', 'pickle.dump(worker_config,', 'f)', 'worker_file', '=', 'os.path.join(worker.get_...
968,373
huawei-noah/xingtian
deserialize.py
load_worker
load_worker
Load worker from file.
[ "Load", "worker", "from", "file." ]
def load_worker(worker_file): import pickle with open(worker_file, 'rb') as f: worker = pickle.load(f) return worker
['def', 'load_worker(worker_file):', 'import', 'pickle', 'with', 'open(worker_file,', "'rb')", 'as', 'f:', 'worker', '=', 'pickle.load(f)', 'return', 'worker']
968,375
huawei-noah/xingtian
distributed_worker.py
DistributedWorker.train_process
train_process
Abstract base function for DistributedWorker to do the train process.
[ "Abstract", "base", "function", "for", "DistributedWorker", "to", "do", "the", "train", "process." ]
def train_process(self): raise NotImplementedError
['def', 'train_process(self):', 'raise', 'NotImplementedError']
968,377
huawei-noah/xingtian
run_remote_worker.py
run_remote_worker
run_remote_worker
Run worker on remote mochine.
[ "Run", "worker", "on", "remote", "mochine." ]
def run_remote_worker(worker_id, worker_path, id): from zeus.common.utils import init_log init_log(level='info', log_file='.temp_{}.log'.format(worker_id), log_path=worker_path) config = _load_config(worker_id, worker_path, id) zeus.register_zeus(os.environ['BACKEND_TYPE'].lower()) if zeus.is_gpu_de...
['def', 'run_remote_worker(worker_id,', 'worker_path,', 'id):', 'from', 'zeus.common.utils', 'import', 'init_log', "init_log(level='info',", "log_file='.temp_{}.log'.format(worker_id),", 'log_path=worker_path)', 'config', '=', '_load_config(worker_id,', 'worker_path,', 'id)', "zeus.register_zeus(os.environ['BACKEND_TYP...
968,378
huawei-noah/xingtian
timm_trainer_callback.py
create_loader
create_loader
Create data loader for timm.
[ "Create", "data", "loader", "for", "timm." ]
def create_loader(dataset, input_size, batch_size, is_training=False, use_prefetcher=True, rand_erase_prob=0.0, rand_erase_mode='const', rand_erase_count=1, color_jitter=0.4, auto_augment=None, interpolation='bilinear', mean=IMAGENET_DEFAULT_MEAN, std=IMAGENET_DEFAULT_STD, num_workers=1, distributed=False, crop_pct=Non...
['def', 'create_loader(dataset,', 'input_size,', 'batch_size,', 'is_training=False,', 'use_prefetcher=True,', 'rand_erase_prob=0.0,', "rand_erase_mode='const',", 'rand_erase_count=1,', 'color_jitter=0.4,', 'auto_augment=None,', "interpolation='bilinear',", 'mean=IMAGENET_DEFAULT_MEAN,', 'std=IMAGENET_DEFAULT_STD,', 'nu...
968,387
huawei-noah/xingtian
timm_trainer_callback.py
TimmTrainerCallback.before_train
before_train
Be called before the training process.
[ "Be", "called", "before", "the", "training", "process." ]
def before_train(self, logs=None): self._init_all_settings()
['def', 'before_train(self,', 'logs=None):', 'self._init_all_settings()']
968,388
huawei-noah/xingtian
timm_trainer_callback.py
TimmTrainerCallback.make_batch
make_batch
Prepare batch data for train_step.
[ "Prepare", "batch", "data", "for", "train_step." ]
def make_batch(self, batch): (input, target) = batch if self.config.cuda and (not self.config.prefetcher): (input, target) = (input.cuda(), target.cuda()) return (input, target)
['def', 'make_batch(self,', 'batch):', '(input,', 'target)', '=', 'batch', 'if', 'self.config.cuda', 'and', '(not', 'self.config.prefetcher):', '(input,', 'target)', '=', '(input.cuda(),', 'target.cuda())', 'return', '(input,', 'target)']
968,390
huawei-noah/xingtian
timm_trainer_callback.py
TimmTrainerCallback.train_step
train_step
Train one step of model.
[ "Train", "one", "step", "of", "model." ]
def train_step(self, batch): (input, target) = batch self.trainer.optimizer.zero_grad() logits = self.trainer.model(input) loss = self.trainer.loss(logits, target) if self.use_amp: with amp.scale_loss(loss, self.trainer.optimizer) as scaled_loss: scaled_loss.backward() ...
['def', 'train_step(self,', 'batch):', '(input,', 'target)', '=', 'batch', 'self.trainer.optimizer.zero_grad()', 'logits', '=', 'self.trainer.model(input)', 'loss', '=', 'self.trainer.loss(logits,', 'target)', 'if', 'self.use_amp:', 'with', 'amp.scale_loss(loss,', 'self.trainer.optimizer)', 'as', 'scaled_loss:', 'scale...
968,391
huawei-noah/xingtian
trainer_base.py
TrainerBase.build
build
Build the trainer by assembling the necessary components.
[ "Build", "the", "trainer", "by", "assembling", "the", "necessary", "components." ]
def build(self): logging.debug('Trainer Config: {}'.format(self.config)) self._init_hps() self.do_validation = self.config.with_valid self.use_syncbn = self.config.syncbn if self.use_syncbn and zeus.is_torch_backend(): import apex self.model = apex.parallel.convert_syncbn_model(self....
['def', 'build(self):', "logging.debug('Trainer", 'Config:', "{}'.format(self.config))", 'self._init_hps()', 'self.do_validation', '=', 'self.config.with_valid', 'self.use_syncbn', '=', 'self.config.syncbn', 'if', 'self.use_syncbn', 'and', 'zeus.is_torch_backend():', 'import', 'apex', 'self.model', '=', 'apex.parallel....
968,395
huawei-noah/xingtian
callback_list.py
CallbackList.set_trainer
set_trainer
Set the trainer object for callback container.
[ "Set", "the", "trainer", "object", "for", "callback", "container." ]
def set_trainer(self, trainer): self.trainer = trainer for callback in self.callbacks: callback.set_trainer(trainer)
['def', 'set_trainer(self,', 'trainer):', 'self.trainer', '=', 'trainer', 'for', 'callback', 'in', 'self.callbacks:', 'callback.set_trainer(trainer)']
968,433
huawei-noah/xingtian
callback_list.py
CallbackList.init_trainer
init_trainer
Call before_epoch of the managed callbacks.
[ "Call", "before_epoch", "of", "the", "managed", "callbacks." ]
def init_trainer(self, logs=None): logs = logs or {} for callback in self.callbacks: callback.init_trainer(logs)
['def', 'init_trainer(self,', 'logs=None):', 'logs', '=', 'logs', 'or', '{}', 'for', 'callback', 'in', 'self.callbacks:', 'callback.init_trainer(logs)']
968,434
huawei-noah/xingtian
callback_list.py
CallbackList.before_train_step
before_train_step
Call before_train_step of the managed callbacks.
[ "Call", "before_train_step", "of", "the", "managed", "callbacks." ]
def before_train_step(self, batch_index, logs=None): logs = logs or {} for callback in self.callbacks: callback.before_train_step(batch_index, logs)
['def', 'before_train_step(self,', 'batch_index,', 'logs=None):', 'logs', '=', 'logs', 'or', '{}', 'for', 'callback', 'in', 'self.callbacks:', 'callback.before_train_step(batch_index,', 'logs)']
968,437
huawei-noah/xingtian
callback_list.py
CallbackList.after_epoch
after_epoch
Call after_epoch of the managed callbacks.
[ "Call", "after_epoch", "of", "the", "managed", "callbacks." ]
def after_epoch(self, epoch, logs=None): logs = logs or {} for callback in self.callbacks: callback.after_epoch(epoch, logs)
['def', 'after_epoch(self,', 'epoch,', 'logs=None):', 'logs', '=', 'logs', 'or', '{}', 'for', 'callback', 'in', 'self.callbacks:', 'callback.after_epoch(epoch,', 'logs)']
968,439
huawei-noah/xingtian
callback_list.py
CallbackList.after_train
after_train
Call after_train of the managed callbacks.
[ "Call", "after_train", "of", "the", "managed", "callbacks." ]
def after_train(self, logs=None): logs = logs or {} for callback in self.callbacks: callback.after_train(logs)
['def', 'after_train(self,', 'logs=None):', 'logs', '=', 'logs', 'or', '{}', 'for', 'callback', 'in', 'self.callbacks:', 'callback.after_train(logs)']
968,440
huawei-noah/xingtian
callback_list.py
CallbackList.after_valid_step
after_valid_step
Call after_valid_step of the managed callbacks.
[ "Call", "after_valid_step", "of", "the", "managed", "callbacks." ]
def after_valid_step(self, batch_index, logs=None): logs = logs or {} for callback in self.callbacks: callback.after_valid_step(batch_index, logs)
['def', 'after_valid_step(self,', 'batch_index,', 'logs=None):', 'logs', '=', 'logs', 'or', '{}', 'for', 'callback', 'in', 'self.callbacks:', 'callback.after_valid_step(batch_index,', 'logs)']
968,443
huawei-noah/xingtian
detection_metrics_evaluator.py
DetectionMetricsEvaluator.before_epoch
before_epoch
Be called before each epoach.
[ "Be", "called", "before", "each", "epoach." ]
def before_epoch(self, epoch, logs=None): super().before_epoch(epoch, logs) self.loss_sum_during_epoch_period = 0 self.step_count_during_epoch_period = 0
['def', 'before_epoch(self,', 'epoch,', 'logs=None):', 'super().before_epoch(epoch,', 'logs)', 'self.loss_sum_during_epoch_period', '=', '0', 'self.step_count_during_epoch_period', '=', '0']
968,446
huawei-noah/xingtian
detection_metrics_evaluator.py
DetectionMetricsEvaluator.after_train_step
after_train_step
Be called after each train batch.
[ "Be", "called", "after", "each", "train", "batch." ]
def after_train_step(self, batch_index, logs=None): (input, target) = self.train_batch batch_size = input.size(0) self.cur_loss = logs['loss'] self.loss_avg = self._average_loss_during_train_period(batch_size, self.cur_loss) logs.update({'cur_loss': self.cur_loss, 'loss_avg': self.loss_avg})
['def', 'after_train_step(self,', 'batch_index,', 'logs=None):', '(input,', 'target)', '=', 'self.train_batch', 'batch_size', '=', 'input.size(0)', 'self.cur_loss', '=', "logs['loss']", 'self.loss_avg', '=', 'self._average_loss_during_train_period(batch_size,', 'self.cur_loss)', "logs.update({'cur_loss':", 'self.cur_lo...
968,447
huawei-noah/xingtian
detection_progress_logger.py
DetectionProgressLogger.after_train_step
after_train_step
Be called before each batch training.
[ "Be", "called", "before", "each", "batch", "training." ]
def after_train_step(self, batch_index, logs=None): if self.train_verbose >= 2 and self.is_chief and (batch_index % self.train_report_steps == 0): try: out_buffer = OrderedDict(time=time.strftime('%Y-%m-%d @ %H:%M:%S'), epoch=f'{self.cur_epoch}/{self.epochs}', step=f'{self._format_batch(batch_in...
['def', 'after_train_step(self,', 'batch_index,', 'logs=None):', 'if', 'self.train_verbose', '>=', '2', 'and', 'self.is_chief', 'and', '(batch_index', '%', 'self.train_report_steps', '==', '0):', 'try:', 'out_buffer', '=', "OrderedDict(time=time.strftime('%Y-%m-%d", '@', "%H:%M:%S'),", "epoch=f'{self.cur_epoch}/{self.e...
968,449
huawei-noah/xingtian
detection_progress_logger.py
DetectionProgressLogger.after_valid_step
after_valid_step
Be called after each batch of the validation.
[ "Be", "called", "after", "each", "batch", "of", "the", "validation." ]
def after_valid_step(self, batch_index, logs=None): if self.valid_verbose >= 2 and self.is_chief and self.do_validation and (batch_index % self.valid_report_steps == 0): metrics_results = logs.get('valid_step_metrics', None) if metrics_results is not None: out_buffer = OrderedDict(time=t...
['def', 'after_valid_step(self,', 'batch_index,', 'logs=None):', 'if', 'self.valid_verbose', '>=', '2', 'and', 'self.is_chief', 'and', 'self.do_validation', 'and', '(batch_index', '%', 'self.valid_report_steps', '==', '0):', 'metrics_results', '=', "logs.get('valid_step_metrics',", 'None)', 'if', 'metrics_results', 'is...
968,450
huawei-noah/xingtian
detection_progress_logger.py
DetectionProgressLogger.after_valid
after_valid
Be called after validation.
[ "Be", "called", "after", "validation." ]
def after_valid(self, logs=None): if self.valid_verbose >= 1 and self.is_chief and self.do_validation: cur_valid_perfs = logs.get('cur_valid_perfs', None) if cur_valid_perfs is not None: log_info = 'epoch [{}/{}], current valid perfs {}'.format(self.cur_epoch + 1, self.epochs, self._form...
['def', 'after_valid(self,', 'logs=None):', 'if', 'self.valid_verbose', '>=', '1', 'and', 'self.is_chief', 'and', 'self.do_validation:', 'cur_valid_perfs', '=', "logs.get('cur_valid_perfs',", 'None)', 'if', 'cur_valid_perfs', 'is', 'not', 'None:', 'log_info', '=', "'epoch", '[{}/{}],', 'current', 'valid', 'perfs', "{}'...
968,451
huawei-noah/xingtian
lr_scheduler.py
LearningRateScheduler.before_train
before_train
Be called before training.
[ "Be", "called", "before", "training." ]
def before_train(self, logs=None): self.lr_scheduler = self.trainer.lr_scheduler
['def', 'before_train(self,', 'logs=None):', 'self.lr_scheduler', '=', 'self.trainer.lr_scheduler']
968,452
huawei-noah/xingtian
lr_scheduler.py
LearningRateScheduler.after_epoch
after_epoch
Be called before each epoch.
[ "Be", "called", "before", "each", "epoch." ]
def after_epoch(self, epoch, logs=None): if self.lr_scheduler and self.lr_scheduler.by_epoch: self.lr_scheduler.step(epoch=epoch)
['def', 'after_epoch(self,', 'epoch,', 'logs=None):', 'if', 'self.lr_scheduler', 'and', 'self.lr_scheduler.by_epoch:', 'self.lr_scheduler.step(epoch=epoch)']
968,454
huawei-noah/xingtian
lr_scheduler.py
LearningRateScheduler.after_train_step
after_train_step
Call after_train_step of the managed callbacks.
[ "Call", "after_train_step", "of", "the", "managed", "callbacks." ]
def after_train_step(self, batch_index, logs=None): if self.lr_scheduler and (not self.lr_scheduler.by_epoch): step = self.trainer.batch_num_train * self.epoch + self.epoch + batch_index self.lr_scheduler.step(epoch=step)
['def', 'after_train_step(self,', 'batch_index,', 'logs=None):', 'if', 'self.lr_scheduler', 'and', '(not', 'self.lr_scheduler.by_epoch):', 'step', '=', 'self.trainer.batch_num_train', '*', 'self.epoch', '+', 'self.epoch', '+', 'batch_index', 'self.lr_scheduler.step(epoch=step)']
968,455
huawei-noah/xingtian
metrics_evaluator.py
MetricsEvaluator.before_train_step
before_train_step
Be called before a batch training.
[ "Be", "called", "before", "a", "batch", "training." ]
def before_train_step(self, batch_index, logs=None): self.train_batch = logs['train_batch']
['def', 'before_train_step(self,', 'batch_index,', 'logs=None):', 'self.train_batch', '=', "logs['train_batch']"]
968,458
huawei-noah/xingtian
metrics_evaluator.py
MetricsEvaluator.before_valid_step
before_valid_step
Be called before a batch validation.
[ "Be", "called", "before", "a", "batch", "validation." ]
def before_valid_step(self, batch_index, logs=None): self.valid_batch = logs['valid_batch']
['def', 'before_valid_step(self,', 'batch_index,', 'logs=None):', 'self.valid_batch', '=', "logs['valid_batch']"]
968,460
huawei-noah/xingtian
metrics_evaluator.py
MetricsEvaluator.after_epoch
after_epoch
Be called after each epoch.
[ "Be", "called", "after", "each", "epoch." ]
def after_epoch(self, epoch, logs=None): self.summary_perfs = logs.get('summary_perfs', {}) self.summary_perfs.update({'loss_avg': self.loss_avg}) if self.train_metrics is not None and self.get_train_metric_after_epoch: metrics_results = self.train_metrics.results self.cur_train_perfs = metr...
['def', 'after_epoch(self,', 'epoch,', 'logs=None):', 'self.summary_perfs', '=', "logs.get('summary_perfs',", '{})', "self.summary_perfs.update({'loss_avg':", 'self.loss_avg})', 'if', 'self.train_metrics', 'is', 'not', 'None', 'and', 'self.get_train_metric_after_epoch:', 'metrics_results', '=', 'self.train_metrics.resu...
968,463
huawei-noah/xingtian
model_statistics.py
ModelStatistics.after_train_step
after_train_step
Be called after each batch of Training.
[ "Be", "called", "after", "each", "batch", "of", "Training." ]
def after_train_step(self, batch_index, logs=None): try: if self.input is None: (input, target) = logs['train_batch'] self.input = torch.unsqueeze(input[0], 0) except Exception as ex: logging.warning('model statics failed, ex=%s', ex)
['def', 'after_train_step(self,', 'batch_index,', 'logs=None):', 'try:', 'if', 'self.input', 'is', 'None:', '(input,', 'target)', '=', "logs['train_batch']", 'self.input', '=', 'torch.unsqueeze(input[0],', '0)', 'except', 'Exception', 'as', 'ex:', "logging.warning('model", 'statics', 'failed,', "ex=%s',", 'ex)']
968,469
huawei-noah/xingtian
model_statistics.py
ModelStatistics.after_train
after_train
Be called after train.
[ "Be", "called", "after", "train." ]
def after_train(self, logs=None): if not self.calc_params_each_epoch: self.update_flops_params(logs=logs) if self.calc_latency: self.update_latency(logs=logs)
['def', 'after_train(self,', 'logs=None):', 'if', 'not', 'self.calc_params_each_epoch:', 'self.update_flops_params(logs=logs)', 'if', 'self.calc_latency:', 'self.update_latency(logs=logs)']
968,471
huawei-noah/xingtian
runtime_callback.py
RuntimeCallback.after_epoch
after_epoch
Obtain estimated running time after epoch.
[ "Obtain", "estimated", "running", "time", "after", "epoch." ]
def after_epoch(self, epoch, logs=None): self.remain_time['train'] = self.rt_est.remaining_time('train', step=epoch + 1) using_time = self.rt_est.using_time('train') self.whole_time['train'] = self.remain_time['train'] + using_time logs.update({'runtime': {'remain_time': self.remain_time, 'whole_time': ...
['def', 'after_epoch(self,', 'epoch,', 'logs=None):', "self.remain_time['train']", '=', "self.rt_est.remaining_time('train',", 'step=epoch', '+', '1)', 'using_time', '=', "self.rt_est.using_time('train')", "self.whole_time['train']", '=', "self.remain_time['train']", '+', 'using_time', "logs.update({'runtime':", "{'rem...
968,489
huawei-noah/xingtian
runtime_callback.py
RuntimeCallback.after_train_step
after_train_step
Obtain estimated running time after step.
[ "Obtain", "estimated", "running", "time", "after", "step." ]
def after_train_step(self, batch_index, logs=None): self.remain_time['epoch'] = self.rt_est.remaining_time('epoch', step=batch_index + 1) using_time = self.rt_est.using_time('epoch') self.whole_time['epoch'] = self.remain_time['epoch'] + using_time
['def', 'after_train_step(self,', 'batch_index,', 'logs=None):', "self.remain_time['epoch']", '=', "self.rt_est.remaining_time('epoch',", 'step=batch_index', '+', '1)', 'using_time', '=', "self.rt_est.using_time('epoch')", "self.whole_time['epoch']", '=', "self.remain_time['epoch']", '+', 'using_time']
968,490
huawei-noah/xingtian
visual_callback.py
make_keys_readable
make_keys_readable
Make keys readable with flat&join.
[ "Make", "keys", "readable", "with", "flat&join." ]
def make_keys_readable(records): return [('/'.join(k), v) for (k, v) in _flat_items(records)]
['def', 'make_keys_readable(records):', 'return', "[('/'.join(k),", 'v)', 'for', '(k,', 'v)', 'in', '_flat_items(records)]']
968,492
huawei-noah/xingtian
visual_callback.py
VisualCallBack.before_train
before_train
Fetch trainer info before train stage.
[ "Fetch", "trainer", "info", "before", "train", "stage." ]
def before_train(self, logs=None): self._fix_path = '_'.join([self.trainer.step_name, str(self.trainer.worker_id)]) self.summary = SummaryBoard(self._archive_root, self._fix_path) if zeus.is_tf_backend(): import tensorflow as tf datasets = self.trainer.valid_input_fn() data_iter = tf...
['def', 'before_train(self,', 'logs=None):', 'self._fix_path', '=', "'_'.join([self.trainer.step_name,", 'str(self.trainer.worker_id)])', 'self.summary', '=', 'SummaryBoard(self._archive_root,', 'self._fix_path)', 'if', 'zeus.is_tf_backend():', 'import', 'tensorflow', 'as', 'tf', 'datasets', '=', 'self.trainer.valid_in...
968,493
huawei-noah/xingtian
visual_callback.py
VisualCallBack.after_train
after_train
Shutdown summary after train.
[ "Shutdown", "summary", "after", "train." ]
def after_train(self, logs=None): self.summary.close()
['def', 'after_train(self,', 'logs=None):', 'self.summary.close()']
968,497
huawei-noah/xingtian
ms_lr_scheduler.py
MultiStepLR.construct
construct
Call lr scheduler class.
[ "Call", "lr", "scheduler", "class." ]
def construct(self, global_step): lr_each_step = [] decay_step_index = [int(global_step * (self.milestones[i] / self.total_epoch)) for i in range(len(self.milestones) + 1)] for i in range(global_step): if i < decay_step_index[0]: lr_each_step.append(self.base_lr) elif i < decay_s...
['def', 'construct(self,', 'global_step):', 'lr_each_step', '=', '[]', 'decay_step_index', '=', '[int(global_step', '*', '(self.milestones[i]', '/', 'self.total_epoch))', 'for', 'i', 'in', 'range(len(self.milestones)', '+', '1)]', 'for', 'i', 'in', 'range(global_step):', 'if', 'i', '<', 'decay_step_index[0]:', 'lr_each...
968,507
huawei-noah/xingtian
warmup_scheduler_tf.py
WarmupScheduler.step
step
Step forward for current scheduler.
[ "Step", "forward", "for", "current", "scheduler." ]
def step(self, epoch=None): self.lr.step(epoch)
['def', 'step(self,', 'epoch=None):', 'self.lr.step(epoch)']
968,512
huawei-noah/xingtian
optimizer.py
dynamic_distributed_optimizer
dynamic_distributed_optimizer
Dynamically choose distributed optimizer.
[ "Dynamically", "choose", "distributed", "optimizer." ]
def dynamic_distributed_optimizer(optimizer_class, optimizer): class DynamicDistributedOptimizer(optimizer_class, OptimizerStep): def __init__(self, optimizer): optimizer_class.__init__(self, optimizer) OptimizerStep.__init__(self, learning_rate=optimizer.base_lr, weight_decay=opti...
['def', 'dynamic_distributed_optimizer(optimizer_class,', 'optimizer):', 'class', 'DynamicDistributedOptimizer(optimizer_class,', 'OptimizerStep):', 'def', '__init__(self,', 'optimizer):', 'optimizer_class.__init__(self,', 'optimizer)', 'OptimizerStep.__init__(self,', 'learning_rate=optimizer.base_lr,', 'weight_decay=o...
968,514
huawei-noah/xingtian
optimizer.py
OptimizerStep.set_lr
set_lr
Uptate learning rate of optimizer.
[ "Uptate", "learning", "rate", "of", "optimizer." ]
def set_lr(self, learning_rate): if hasattr(self, '_learning_rate'): self._learning_rate = learning_rate elif hasattr(self, '_lr'): self._lr = learning_rate
['def', 'set_lr(self,', 'learning_rate):', 'if', 'hasattr(self,', "'_learning_rate'):", 'self._learning_rate', '=', 'learning_rate', 'elif', 'hasattr(self,', "'_lr'):", 'self._lr', '=', 'learning_rate']
968,515
huawei-noah/xingtian
optimizer.py
OptimizerStep.step
step
Compute and update gradients.
[ "Compute", "and", "update", "gradients." ]
def step(self, loss, loss_scale, global_step, var_list=None): loss = loss + self.regularize_loss(loss) if loss_scale != 1: scaled_grad_vars = self.compute_gradients(loss * loss_scale, var_list=var_list) unscaled_grad_vars = [] for (grad, var) in scaled_grad_vars: unscaled_gra...
['def', 'step(self,', 'loss,', 'loss_scale,', 'global_step,', 'var_list=None):', 'loss', '=', 'loss', '+', 'self.regularize_loss(loss)', 'if', 'loss_scale', '!=', '1:', 'scaled_grad_vars', '=', 'self.compute_gradients(loss', '*', 'loss_scale,', 'var_list=var_list)', 'unscaled_grad_vars', '=', '[]', 'for', '(grad,', 'va...
968,516
huawei-noah/xingtian
optimizer.py
OptimizerStep.regularize_loss
regularize_loss
Compute and return l2 loss.
[ "Compute", "and", "return", "l2", "loss." ]
def regularize_loss(self, loss): l2_loss_list = [tf.nn.l2_loss(v) for v in tf.compat.v1.trainable_variables() if 'batch_normalization' not in v.name] loss = loss + self.weight_decay * tf.add_n(l2_loss_list) return loss
['def', 'regularize_loss(self,', 'loss):', 'l2_loss_list', '=', '[tf.nn.l2_loss(v)', 'for', 'v', 'in', 'tf.compat.v1.trainable_variables()', 'if', "'batch_normalization'", 'not', 'in', 'v.name]', 'loss', '=', 'loss', '+', 'self.weight_decay', '*', 'tf.add_n(l2_loss_list)', 'return', 'loss']
968,517
huawei-noah/xingtian
loss.py
NT_Xent.forward
forward
Calculate the compare loss.
[ "Calculate", "the", "compare", "loss." ]
def forward(self, z_i, z_j): N = 2 * self.batch_size z = torch.cat((z_i, z_j), dim=0) sim = self.similarity_f(z.unsqueeze(1), z.unsqueeze(0)) / self.temperature sim_i_j = torch.diag(sim, self.batch_size) sim_j_i = torch.diag(sim, -self.batch_size) positive_samples = torch.cat((sim_i_j, sim_j_i),...
['def', 'forward(self,', 'z_i,', 'z_j):', 'N', '=', '2', '*', 'self.batch_size', 'z', '=', 'torch.cat((z_i,', 'z_j),', 'dim=0)', 'sim', '=', 'self.similarity_f(z.unsqueeze(1),', 'z.unsqueeze(0))', '/', 'self.temperature', 'sim_i_j', '=', 'torch.diag(sim,', 'self.batch_size)', 'sim_j_i', '=', 'torch.diag(sim,', '-self.b...
968,519
huawei-noah/xingtian
model.py
SimclrModel.output_channel
output_channel
Output Channel for last conv2d.
[ "Output", "Channel", "for", "last", "conv2d." ]
def output_channel(self): return [module.out_channels for (name, module) in self.named_modules() if isinstance(module, nn.Conv2d)][-1]
['def', 'output_channel(self):', 'return', '[module.out_channels', 'for', '(name,', 'module)', 'in', 'self.named_modules()', 'if', 'isinstance(module,', 'nn.Conv2d)][-1]']
968,521
huawei-noah/xingtian
tensorboarder.py
is_board_running
is_board_running
Check if process running.
[ "Check", "if", "process", "running." ]
def is_board_running(pro_name='tensorboard'): cmd = 'ps aux | grep "' + pro_name + '" | grep -v grep | grep -v tail | grep -v keepH5ssAlive' try: process_num = len(os.popen(cmd).readlines()) if process_num >= 1: return True else: return False except BaseExcept...
['def', "is_board_running(pro_name='tensorboard'):", 'cmd', '=', "'ps", 'aux', '|', 'grep', '"\'', '+', 'pro_name', '+', '\'"', '|', 'grep', '-v', 'grep', '|', 'grep', '-v', 'tail', '|', 'grep', '-v', "keepH5ssAlive'", 'try:', 'process_num', '=', 'len(os.popen(cmd).readlines())', 'if', 'process_num', '>=', '1:', 'retur...
968,524
huawei-noah/xingtian
tensorboarder.py
SummaryBoard.insert_epoch_logs
insert_epoch_logs
Insert logs after epoch.
[ "Insert", "logs", "after", "epoch." ]
def insert_epoch_logs(self, logs, epoch): for (k, v) in logs: if not v: continue self.add_scalar(k, v, epoch, flush=False) self.writer.flush()
['def', 'insert_epoch_logs(self,', 'logs,', 'epoch):', 'for', '(k,', 'v)', 'in', 'logs:', 'if', 'not', 'v:', 'continue', 'self.add_scalar(k,', 'v,', 'epoch,', 'flush=False)', 'self.writer.flush()']
968,525
huawei-noah/xingtian
visual_rewards.py
parse_xt_train_config
parse_xt_train_config
Create utils for parse xt config file.
[ "Create", "utils", "for", "parse", "xt", "config", "file." ]
def parse_xt_train_config(yaml_obj): env = yaml_obj.get('env_para') alg = yaml_obj.get('alg_para') _model = yaml_obj.get('model_para') alg['model_info'] = _model agent = yaml_obj.get('agent_para') return (env, alg, agent)
['def', 'parse_xt_train_config(yaml_obj):', 'env', '=', "yaml_obj.get('env_para')", 'alg', '=', "yaml_obj.get('alg_para')", '_model', '=', "yaml_obj.get('model_para')", "alg['model_info']", '=', '_model', 'agent', '=', "yaml_obj.get('agent_para')", 'return', '(env,', 'alg,', 'agent)']
968,530
huawei-noah/xingtian
visual_rewards.py
handle_once_local_data_record
handle_once_local_data_record
Handle the record from local file.
[ "Handle", "the", "record", "from", "local", "file." ]
def handle_once_local_data_record(case_paras, use_index, stage='eval', clear_tensorboard=True): (env_info, alg_info, agent_info) = parse_xt_train_config(case_paras) benchmark_info = case_paras.get('benchmark', dict()) bm_args = parse_benchmark_args(env_info, alg_info, agent_info, benchmark_info) records...
['def', 'handle_once_local_data_record(case_paras,', 'use_index,', "stage='eval',", 'clear_tensorboard=True):', '(env_info,', 'alg_info,', 'agent_info)', '=', 'parse_xt_train_config(case_paras)', 'benchmark_info', '=', "case_paras.get('benchmark',", 'dict())', 'bm_args', '=', 'parse_benchmark_args(env_info,', 'alg_info...
968,531
huawei-noah/xingtian
visual_rewards.py
write2board
write2board
Write record into tensorboard, include, loss, reward etc.
[ "Write", "record", "into", "tensorboard,", "include,", "loss,", "reward", "etc." ]
def write2board(stage, record_dict, use_index, case_tb_dir): if use_index == 'step': x_key = 'sample_step' elif use_index == 'sec': x_key = 'elapsed_sec' else: raise KeyError("need in 'step' or 'sec', get: {}".format(use_index)) if stage == 'eval': display_list = ['eval_r...
['def', 'write2board(stage,', 'record_dict,', 'use_index,', 'case_tb_dir):', 'if', 'use_index', '==', "'step':", 'x_key', '=', "'sample_step'", 'elif', 'use_index', '==', "'sec':", 'x_key', '=', "'elapsed_sec'", 'else:', 'raise', 'KeyError("need', 'in', "'step'", 'or', "'sec',", 'get:', '{}".format(use_index))', 'if', ...
968,532
SapienzaNLP/xl-amr
vocabulary.py
Vocabulary.extend_from_instances
extend_from_instances
Extends an already generated vocabulary using a collection of instances.
[ "Extends", "an", "already", "generated", "vocabulary", "using", "a", "collection", "of", "instances." ]
def extend_from_instances(self, params: Params, instances: Iterable['adi.Instance']=()) -> None: min_count = params.pop('min_count', None) max_vocab_size = pop_max_vocab_size(params) non_padded_namespaces = params.pop('non_padded_namespaces', DEFAULT_NON_PADDED_NAMESPACES) pretrained_files = params.pop(...
['def', 'extend_from_instances(self,', 'params:', 'Params,', 'instances:', "Iterable['adi.Instance']=())", '->', 'None:', 'min_count', '=', "params.pop('min_count',", 'None)', 'max_vocab_size', '=', 'pop_max_vocab_size(params)', 'non_padded_namespaces', '=', "params.pop('non_padded_namespaces',", 'DEFAULT_NON_PADDED_NA...
968,548
SapienzaNLP/xl-amr
vocabulary.py
Vocabulary.is_padded
is_padded
Returns whether or not there are padding and OOV tokens added to the given namepsace.
[ "Returns", "whether", "or", "not", "there", "are", "padding", "and", "OOV", "tokens", "added", "to", "the", "given", "namepsace." ]
def is_padded(self, namespace: str) -> bool: return self._index_to_token[namespace][0] == self._padding_token
['def', 'is_padded(self,', 'namespace:', 'str)', '->', 'bool:', 'return', 'self._index_to_token[namespace][0]', '==', 'self._padding_token']
968,549
SapienzaNLP/xl-amr
graph_repair.py
GraphRepair.remove_redundant_edges
remove_redundant_edges
Edge labels such as ARGx, ARGx-of, and 'opx' should only appear at most once in each node's outgoing edges.
[ "Edge", "labels", "such", "as", "ARGx,", "ARGx-of,", "and", "'opx'", "should", "only", "appear", "at", "most", "once", "in", "each", "node's", "outgoing", "edges." ]
def remove_redundant_edges(self): graph = self.graph nodes = [node for node in graph.get_nodes()] removed_nodes = set() for node in nodes: if node in removed_nodes: continue edges = list(graph._G.edges(node)) edge_counter = defaultdict(list) for (source, targe...
['def', 'remove_redundant_edges(self):', 'graph', '=', 'self.graph', 'nodes', '=', '[node', 'for', 'node', 'in', 'graph.get_nodes()]', 'removed_nodes', '=', 'set()', 'for', 'node', 'in', 'nodes:', 'if', 'node', 'in', 'removed_nodes:', 'continue', 'edges', '=', 'list(graph._G.edges(node))', 'edge_counter', '=', 'default...
968,552
SapienzaNLP/xl-amr
polarity.py
Polarity.predict_polarity
predict_polarity
Use rules to predict polarity and its head.
[ "Use", "rules", "to", "predict", "polarity", "and", "its", "head." ]
def predict_polarity(self): for i in range(len(self.amr.tokens)): if self.is_negation(i): head = self.get_head(i) if head is not None: self.negations.append((i, head)) else: self.add_special_negation(i)
['def', 'predict_polarity(self):', 'for', 'i', 'in', 'range(len(self.amr.tokens)):', 'if', 'self.is_negation(i):', 'head', '=', 'self.get_head(i)', 'if', 'head', 'is', 'not', 'None:', 'self.negations.append((i,', 'head))', 'else:', 'self.add_special_negation(i)']
968,555
SapienzaNLP/xl-amr
sense_remover.py
SenseRemover.map_instance_to_lemmas
map_instance_to_lemmas
Get the candidate lemmas which can be used to represent the instance.
[ "Get", "the", "candidate", "lemmas", "which", "can", "be", "used", "to", "represent", "the", "instance." ]
def map_instance_to_lemmas(self, instance): if not (isinstance(instance, str) and (not re.search('^".*"$', instance))): instance = str(instance) if re.search('-\\d\\d$', instance): lemmas = self.node_utils.get_lemmas(instance) else: lemmas = [instance] return lemmas
['def', 'map_instance_to_lemmas(self,', 'instance):', 'if', 'not', '(isinstance(instance,', 'str)', 'and', '(not', 're.search(\'^".*"$\',', 'instance))):', 'instance', '=', 'str(instance)', 'if', "re.search('-\\\\d\\\\d$',", 'instance):', 'lemmas', '=', 'self.node_utils.get_lemmas(instance)', 'else:', 'lemmas', '=', '[...
968,557
SapienzaNLP/xl-amr
tokenizer.py
Tokenizer.batch_tokenize
batch_tokenize
Batches together tokenization of several texts, in case that is faster for particular tokenizers.
[ "Batches", "together", "tokenization", "of", "several", "texts,", "in", "case", "that", "is", "faster", "for", "particular", "tokenizers." ]
def batch_tokenize(self, texts: List[str]) -> List[List[Token]]: raise NotImplementedError
['def', 'batch_tokenize(self,', 'texts:', 'List[str])', '->', 'List[List[Token]]:', 'raise', 'NotImplementedError']
968,568
SapienzaNLP/xl-amr
word_filter.py
WordFilter.filter_words
filter_words
Returns a filtered list of words.
[ "Returns", "a", "filtered", "list", "of", "words." ]
def filter_words(self, words: List[Token]) -> List[Token]: raise NotImplementedError
['def', 'filter_words(self,', 'words:', 'List[Token])', '->', 'List[Token]:', 'raise', 'NotImplementedError']
968,570
SapienzaNLP/xl-amr
word_splitter.py
WordSplitter.split_words
split_words
Splits ``sentence`` into a list of :class:`Token` objects.
[ "Splits", "``sentence``", "into", "a", "list", "of", ":class:`Token`", "objects." ]
def split_words(self, sentence: str) -> List[Token]: raise NotImplementedError
['def', 'split_words(self,', 'sentence:', 'str)', '->', 'List[Token]:', 'raise', 'NotImplementedError']
968,572
SapienzaNLP/xl-amr
openai_transformer_byte_pair_indexer.py
text_standardize
text_standardize
Apply text standardization following original implementation.
[ "Apply", "text", "standardization", "following", "original", "implementation." ]
def text_standardize(text): text = text.replace('âÂ\x80Â\x94', '-') text = text.replace('âÂ\x80Â\x93', '-') text = text.replace('âÂ\x80Â\x95', '-') text = text.replace('âÂ\x80¦', '...') text = text.replace('Ã\x82´', "'") text = re.sub('(-+|~+|!+|"+|;+|\\?+|\\++|,+|\\)+|\\(+|\\+|\\/+|\\*+|\...
['def', 'text_standardize(text):', 'text', '=', "text.replace('âÂ\\x80Â\\x94',", "'-')", 'text', '=', "text.replace('âÂ\\x80Â\\x93',", "'-')", 'text', '=', "text.replace('âÂ\\x80Â\\x95',", "'-')", 'text', '=', "text.replace('âÂ\\x80¦',", "'...')", 'text', '=', "text.replace('Ã\\x82´',", '"\'")', 'text', '=', 're....
968,575
SapienzaNLP/xl-amr
token_indexer.py
TokenIndexer.get_padding_token
get_padding_token
When we need to add padding tokens, what should they look like? This method returns a "blank" token of whatever type is returned by :func:`tokens_to_indices`.
[ "When", "we", "need", "to", "add", "padding", "tokens,", "what", "should", "they", "look", "like?", "This", "method", "returns", "a", "\"blank\"", "token", "of", "whatever", "type", "is", "returned", "by", ":func:`tokens_to_indices`." ]
def get_padding_token(self) -> TokenType: raise NotImplementedError
['def', 'get_padding_token(self)', '->', 'TokenType:', 'raise', 'NotImplementedError']
968,578
SapienzaNLP/xl-amr
token_indexer.py
TokenIndexer.get_keys
get_keys
Return a list of the keys this indexer return from ``tokens_to_indices``.
[ "Return", "a", "list", "of", "the", "keys", "this", "indexer", "return", "from", "``tokens_to_indices``." ]
def get_keys(self, index_name: str) -> List[str]: return [index_name]
['def', 'get_keys(self,', 'index_name:', 'str)', '->', 'List[str]:', 'return', '[index_name]']
968,581
SapienzaNLP/xl-amr
attachment_score.py
AttachmentScores.get_metric
get_metric
Returns ------- The accumulated metrics as a dictionary.
[ "Returns", "-------", "The", "accumulated", "metrics", "as", "a", "dictionary." ]
def get_metric(self, reset: bool=False): unlabeled_attachment_score = 0.0 labeled_attachment_score = 0.0 unlabeled_exact_match = 0.0 labeled_exact_match = 0.0 edge_loss = 0.0 edge_node_loss = 0.0 edge_label_loss = 0.0 if self._total_words > 0.0: unlabeled_attachment_score = float...
['def', 'get_metric(self,', 'reset:', 'bool=False):', 'unlabeled_attachment_score', '=', '0.0', 'labeled_attachment_score', '=', '0.0', 'unlabeled_exact_match', '=', '0.0', 'labeled_exact_match', '=', '0.0', 'edge_loss', '=', '0.0', 'edge_node_loss', '=', '0.0', 'edge_label_loss', '=', '0.0', 'if', 'self._total_words',...
968,582
SapienzaNLP/xl-amr
metric.py
Metric.reset
reset
Reset any accumulators or internal state.
[ "Reset", "any", "accumulators", "or", "internal", "state." ]
def reset(self) -> None: raise NotImplementedError
['def', 'reset(self)', '->', 'None:', 'raise', 'NotImplementedError']
968,584
SapienzaNLP/xl-amr
model.py
Model.get_parameters_for_histogram_tensorboard_logging
get_parameters_for_histogram_tensorboard_logging
Returns the name of model parameters used for logging histograms to tensorboard.
[ "Returns", "the", "name", "of", "model", "parameters", "used", "for", "logging", "histograms", "to", "tensorboard." ]
def get_parameters_for_histogram_tensorboard_logging(self) -> List[str]: return [name for (name, _) in self.named_parameters()]
['def', 'get_parameters_for_histogram_tensorboard_logging(self)', '->', 'List[str]:', 'return', '[name', 'for', '(name,', '_)', 'in', 'self.named_parameters()]']
968,587
SapienzaNLP/xl-amr
openai_transformer_embedder.py
OpenaiTransformerEmbedder.get_output_dim
get_output_dim
The last dimension of the output, not the shape.
[ "The", "last", "dimension", "of", "the", "output,", "not", "the", "shape." ]
def get_output_dim(self): return self._transformer.embed.embedding_dim
['def', 'get_output_dim(self):', 'return', 'self._transformer.embed.embedding_dim']
968,619
SapienzaNLP/xl-amr
trainer.py
Trainer.train
train
Trains the supplied model with the supplied parameters.
[ "Trains", "the", "supplied", "model", "with", "the", "supplied", "parameters." ]
def train(self): try: (epoch_counter, dev_metric_per_epoch) = self._restore_checkpoint() except RuntimeError: traceback.print_exc() raise ConfigurationError('Could not recover training from the checkpoint. Did you mean to output to a different serialization directory or delete the exist...
['def', 'train(self):', 'try:', '(epoch_counter,', 'dev_metric_per_epoch)', '=', 'self._restore_checkpoint()', 'except', 'RuntimeError:', 'traceback.print_exc()', 'raise', "ConfigurationError('Could", 'not', 'recover', 'training', 'from', 'the', 'checkpoint.', 'Did', 'you', 'mean', 'to', 'output', 'to', 'a', 'different...
968,627
SapienzaNLP/xl-amr
environment.py
occupy_gpu
occupy_gpu
To prevent somebody taking you gpu if you are not using them.
[ "To", "prevent", "somebody", "taking", "you", "gpu", "if", "you", "are", "not", "using", "them." ]
def occupy_gpu(device): torch.cuda.LongTensor(0)
['def', 'occupy_gpu(device):', 'torch.cuda.LongTensor(0)']
968,637
SapienzaNLP/xl-amr
file.py
get_spacy_model
get_spacy_model
In order to avoid loading spacy models a whole bunch of times, we'll save references to them, keyed by the options we used to create the spacy model, so any particular configuration only gets loaded once.
[ "In", "order", "to", "avoid", "loading", "spacy", "models", "a", "whole", "bunch", "of", "times,", "we'll", "save", "references", "to", "them,", "keyed", "by", "the", "options", "we", "used", "to", "create", "the", "spacy", "model,", "so", "any", "particul...
def get_spacy_model(spacy_model_name: str, pos_tags: bool, parse: bool, ner: bool) -> SpacyModelType: options = (spacy_model_name, pos_tags, parse, ner) if options not in LOADED_SPACY_MODELS: disable = ['vectors', 'textcat'] if not pos_tags: disable.append('tagger') if not pa...
['def', 'get_spacy_model(spacy_model_name:', 'str,', 'pos_tags:', 'bool,', 'parse:', 'bool,', 'ner:', 'bool)', '->', 'SpacyModelType:', 'options', '=', '(spacy_model_name,', 'pos_tags,', 'parse,', 'ner)', 'if', 'options', 'not', 'in', 'LOADED_SPACY_MODELS:', 'disable', '=', "['vectors',", "'textcat']", 'if', 'not', 'po...
968,646
SapienzaNLP/xl-amr
__init__.py
is_lazy
is_lazy
Checks if the given iterable is lazy, which here just means it's not a list.
[ "Checks", "if", "the", "given", "iterable", "is", "lazy,", "which", "here", "just", "means", "it's", "not", "a", "list." ]
def is_lazy(iterable: Iterable[A]) -> bool: return not isinstance(iterable, list)
['def', 'is_lazy(iterable:', 'Iterable[A])', '->', 'bool:', 'return', 'not', 'isinstance(iterable,', 'list)']
968,683
deepmind/xmanager
auth.py
get_creds
get_creds
Gets the google credentials to be used with GCP APIs.
[ "Gets", "the", "google", "credentials", "to", "be", "used", "with", "GCP", "APIs." ]
def get_creds(scopes: Iterable[str]=_DEFAULT_SCOPES): (creds, _) = auth.default(scopes=scopes) return creds
['def', 'get_creds(scopes:', 'Iterable[str]=_DEFAULT_SCOPES):', '(creds,', '_)', '=', 'auth.default(scopes=scopes)', 'return', 'creds']
968,691
deepmind/xmanager
auth.py
enable_apis
enable_apis
Enables APIs on the GCP Project.
[ "Enables", "APIs", "on", "the", "GCP", "Project." ]
def enable_apis(): resource = discovery.build('serviceusage', 'v1') body = {'serviceIds': ['aiplatform.googleapis.com', 'cloudbuild.googleapis.com', 'cloudresourcemanager.googleapis.com', 'compute.googleapis.com', 'container.googleapis.com', 'containerregistry.googleapis.com', 'iam.googleapis.com', 'logging.goo...
['def', 'enable_apis():', 'resource', '=', "discovery.build('serviceusage',", "'v1')", 'body', '=', "{'serviceIds':", "['aiplatform.googleapis.com',", "'cloudbuild.googleapis.com',", "'cloudresourcemanager.googleapis.com',", "'compute.googleapis.com',", "'container.googleapis.com',", "'containerregistry.googleapis.com'...
968,692
deepmind/xmanager
auth_test.py
GetServiceAccountTest.test_get_service_account_existing_account
test_get_service_account_existing_account
Tests that `get_service_account` does nothing on a properly configured account.
[ "Tests", "that", "`get_service_account`", "does", "nothing", "on", "a", "properly", "configured", "account." ]
def test_get_service_account_existing_account(self, sys_argv, expected_account_name): flags.FLAGS(sys_argv) mock_service_accounts = mock.Mock() mock_service_accounts.list.return_value.execute.return_value = {'accounts': [{'email': f'{expected_account_name}@test-project.iam.gserviceaccount.com'}]} mock_s...
['def', 'test_get_service_account_existing_account(self,', 'sys_argv,', 'expected_account_name):', 'flags.FLAGS(sys_argv)', 'mock_service_accounts', '=', 'mock.Mock()', 'mock_service_accounts.list.return_value.execute.return_value', '=', "{'accounts':", "[{'email':", "f'{expected_account_name}@test-project.iam.gservice...
968,694
deepmind/xmanager
auth_test.py
GetServiceAccountTest.test_get_service_account_new_account
test_get_service_account_new_account
Tests if `get_service_account` creates a new account and permissions properly.
[ "Tests", "if", "`get_service_account`", "creates", "a", "new", "account", "and", "permissions", "properly." ]
def test_get_service_account_new_account(self, sys_argv, expected_account_name): flags.FLAGS(sys_argv) mock_service_accounts = mock.Mock() mock_service_accounts.list.return_value.execute.return_value = {} mock_service_accounts.create.return_value.execute.return_value = None mock_projects = mock.Mock...
['def', 'test_get_service_account_new_account(self,', 'sys_argv,', 'expected_account_name):', 'flags.FLAGS(sys_argv)', 'mock_service_accounts', '=', 'mock.Mock()', 'mock_service_accounts.list.return_value.execute.return_value', '=', '{}', 'mock_service_accounts.create.return_value.execute.return_value', '=', 'None', 'm...
968,695
deepmind/xmanager
auth_test.py
GetServiceAccountTest.test_get_service_account_some_permissions
test_get_service_account_some_permissions
Tests if `get_service_account` creates permissions properly for an existing account with some permissions.
[ "Tests", "if", "`get_service_account`", "creates", "permissions", "properly", "for", "an", "existing", "account", "with", "some", "permissions." ]
def test_get_service_account_some_permissions(self, sys_argv, expected_account_name): flags.FLAGS(sys_argv) mock_service_accounts = mock.Mock() mock_service_accounts.list.return_value.execute.return_value = {'accounts': [{'email': f'{expected_account_name}@test-project.iam.gserviceaccount.com'}, {'email': '...
['def', 'test_get_service_account_some_permissions(self,', 'sys_argv,', 'expected_account_name):', 'flags.FLAGS(sys_argv)', 'mock_service_accounts', '=', 'mock.Mock()', 'mock_service_accounts.list.return_value.execute.return_value', '=', "{'accounts':", "[{'email':", "f'{expected_account_name}@test-project.iam.gservice...
968,697
deepmind/xmanager
build_image.py
build
build
Build a Docker image from a Python project.
[ "Build", "a", "Docker", "image", "from", "a", "Python", "project." ]
def build(py_executable: xm.PythonContainer, args: xm.SequentialArgs, env_vars: Dict[str, str], image_name: Optional[str]=None, project: Optional[str]=None, bucket: Optional[str]=None, pull_image: bool=False) -> str: if not image_name: image_name = _get_image_name(py_executable) dockerfile = _create_doc...
['def', 'build(py_executable:', 'xm.PythonContainer,', 'args:', 'xm.SequentialArgs,', 'env_vars:', 'Dict[str,', 'str],', 'image_name:', 'Optional[str]=None,', 'project:', 'Optional[str]=None,', 'bucket:', 'Optional[str]=None,', 'pull_image:', 'bool=False)', '->', 'str:', 'if', 'not', 'image_name:', 'image_name', '=', '...
968,698
deepmind/xmanager
build_image.py
build_by_dockerfile
build_by_dockerfile
Build a Docker image from a Docker directory.
[ "Build", "a", "Docker", "image", "from", "a", "Docker", "directory." ]
def build_by_dockerfile(path: str, dockerfile: str, image_name: str, project: Optional[str]=None, bucket: Optional[str]=None, pull_image: bool=False): print('Building Docker image, please wait...') if _BUILD_IMAGE_LOCALLY.value: if docker_lib.is_docker_installed(): return docker_lib.build_do...
['def', 'build_by_dockerfile(path:', 'str,', 'dockerfile:', 'str,', 'image_name:', 'str,', 'project:', 'Optional[str]=None,', 'bucket:', 'Optional[str]=None,', 'pull_image:', 'bool=False):', "print('Building", 'Docker', 'image,', 'please', "wait...')", 'if', '_BUILD_IMAGE_LOCALLY.value:', 'if', 'docker_lib.is_docker_in...
968,699
deepmind/xmanager
cloud_build.py
Client.build_docker_image
build_docker_image
Create a Docker image via Cloud Build and push to Cloud Repository.
[ "Create", "a", "Docker", "image", "via", "Cloud", "Build", "and", "push", "to", "Cloud", "Repository." ]
def build_docker_image(self, image: str, directory: str, upload_name: str) -> str: (repository, tag) = docker_utils.parse_repository_tag(image) if not tag: tag = datetime.datetime.now().strftime('%Y%m%d-%H%M%S_%f') (_, archive_path) = tempfile.mkstemp(suffix='.tar.gz') with tarfile.open(archive_...
['def', 'build_docker_image(self,', 'image:', 'str,', 'directory:', 'str,', 'upload_name:', 'str)', '->', 'str:', '(repository,', 'tag)', '=', 'docker_utils.parse_repository_tag(image)', 'if', 'not', 'tag:', 'tag', '=', "datetime.datetime.now().strftime('%Y%m%d-%H%M%S_%f')", '(_,', 'archive_path)', '=', "tempfile.mkste...
968,701
deepmind/xmanager
cloud_build.py
Client.wait_for_build
wait_for_build
Waits for build to finish and return the image URI of the result.
[ "Waits", "for", "build", "to", "finish", "and", "return", "the", "image", "URI", "of", "the", "result." ]
def wait_for_build(self, build_id: str, kaniko_image: str) -> str: backoff = 30 while True: time.sleep(backoff) result = self.cloudbuild_api.projects().builds().get(projectId=self.project, id=build_id).execute() status = result['status'] print('Cloud Build status:', status) ...
['def', 'wait_for_build(self,', 'build_id:', 'str,', 'kaniko_image:', 'str)', '->', 'str:', 'backoff', '=', '30', 'while', 'True:', 'time.sleep(backoff)', 'result', '=', 'self.cloudbuild_api.projects().builds().get(projectId=self.project,', 'id=build_id).execute()', 'status', '=', "result['status']", "print('Cloud", 'B...
968,702
deepmind/xmanager
docker_lib.py
prepare_directory
prepare_directory
Stage all inputs into the destination directory.
[ "Stage", "all", "inputs", "into", "the", "destination", "directory." ]
def prepare_directory(destination_directory: str, source_directory: str, project_name: str, entrypoint_file: str, dockerfile: str) -> None: source_path = pathlib.Path(source_directory) size = sum((f.stat().st_size for f in source_path.glob('**/*') if f.is_file())) print(f'Size of Docker input: {humanize.nat...
['def', 'prepare_directory(destination_directory:', 'str,', 'source_directory:', 'str,', 'project_name:', 'str,', 'entrypoint_file:', 'str,', 'dockerfile:', 'str)', '->', 'None:', 'source_path', '=', 'pathlib.Path(source_directory)', 'size', '=', 'sum((f.stat().st_size', 'for', 'f', 'in', "source_path.glob('**/*')", 'i...
968,703
deepmind/xmanager
docker_lib.py
is_docker_installed
is_docker_installed
Checks if Docker is installed and accessible.
[ "Checks", "if", "Docker", "is", "installed", "and", "accessible." ]
def is_docker_installed() -> bool: try: docker_client = docker.from_env() logging.info('Local docker: %s', docker_client.version()) return True except docker.errors.DockerException as e: if 'No such file or directory' in str(e): return False logging.info(e) ...
['def', 'is_docker_installed()', '->', 'bool:', 'try:', 'docker_client', '=', 'docker.from_env()', "logging.info('Local", 'docker:', "%s',", 'docker_client.version())', 'return', 'True', 'except', 'docker.errors.DockerException', 'as', 'e:', 'if', "'No", 'such', 'file', 'or', "directory'", 'in', 'str(e):', 'return', 'F...
968,704
deepmind/xmanager
kubernetes.py
requirements_from_executor
requirements_from_executor
Get resource limits from the executor.
[ "Get", "resource", "limits", "from", "the", "executor." ]
def requirements_from_executor(executor: local_executors.Kubernetes) -> k8s_client.V1ResourceRequirements: limits = {} for (resource, value) in executor.requirements.task_requirements.items(): if resource in xm.GpuType: limits['nvidia.com/gpu'] = f'{value:g}' elif resource in xm.TpuT...
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