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chr1 18738120 A G ALU SINE/Alu - - Intergenic - - 4 4 dentate gyrus;globus pallidus;medulla;thalamus |
chr1 18738331 A G ALU SINE/Alu - - Intergenic - - 6 6 anterior cingulate gyrus;orbital gyrus;pons;preoptic area;septum;subiculum |
chr1 18767114 T C REP DNA/hAT-Charlie ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 6 6 anterior hippocampus;caudate nucleus;claustrum;posterior hypothalamus;septum;superior temporal gyrus |
chr1 18777035 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 2 2 posterior hypothalamus;septum |
chr1 18777127 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 2 2 posterior hypothalamus;substantia nigra |
chr1 18777145 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 3 3 dentate gyrus;posterior hypothalamus;superior colliculus |
chr1 18777187 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 4 4 midbrain;posterior hypothalamus;septum;superior colliculus |
chr1 18778486 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 3 3 globus pallidus;midbrain;posterior hypothalamus |
chr1 18778488 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 3 3 anterior hypothalamus;geniculate nucleus;posterior hypothalamus |
chr1 18779722 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 6 6 anterior hypothalamus;midbrain;posterior hippocampus;posterior hypothalamus;straight gyrus;subiculum |
chr1 18779739 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 2 2 caudate nucleus;posterior hypothalamus |
chr1 18779746 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 11 11 amygdala;anterior hippocampus;anterior hypothalamus;caudate nucleus;geniculate nucleus;medulla;midbrain;posterior hippocampus;posterior hypothalamus;septum;subiculum |
chr1 18779754 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 3 3 caudate nucleus;medulla;posterior hypothalamus |
chr1 18779831 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 5 5 caudate nucleus;geniculate nucleus;medulla;posterior hippocampus;spinal cord dorsal |
chr1 18779833 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 6 6 caudate nucleus;geniculate nucleus;midbrain;posterior hippocampus;posterior hypothalamus;septum |
chr1 18784827 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 2 2 amygdala;posterior hypothalamus |
chr1 18784875 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 14 12 caudate nucleus;dentate gyrus;entorhinal cortex;globus pallidus;lateral occipitotemporal gyrus;midbrain;occipital gyrus;posterior hippocampus;posterior hypothalamus;septum;spinal cord dorsal;subiculum |
chr1 18784901 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 2 2 posterior hypothalamus;spinal cord dorsal |
chr1 18784919 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 2 2 posterior hypothalamus;septum |
chr1 18785036 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 2 2 anterior hippocampus;occipital gyrus |
chr1 18786682 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 3 3 caudate nucleus;posterior hypothalamus;septum |
chr1 18786695 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 3 3 amygdala;postcentral gyrus;posterior hippocampus |
chr1 18786773 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 3 3 caudate nucleus;posterior hippocampus;spinal cord ventral |
chr1 18786830 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 4 4 caudate nucleus;posterior hypothalamus;septum;spinal cord ventral |
chr1 18786890 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 4 4 amygdala;caudate nucleus;posterior hippocampus;posterior hypothalamus |
chr1 18786895 T C ALU SINE/Alu ENSMFAG00000042957:CAPN9 CAPN9 Intronic - - 6 6 amygdala;caudate nucleus;dentate gyrus;posterior hippocampus;posterior hypothalamus;thalamus |
chr1 18824887 A G ALU SINE/Alu - - Intergenic - - 2 2 cerebellum;geniculate nucleus |
chr1 18825036 A G ALU SINE/Alu - - Intergenic - - 2 1 cerebellum |
chr1 18825400 A G ALU SINE/Alu - - Intergenic - - 4 4 anterior hippocampus;cerebellum;geniculate nucleus;septum |
chr1 18825406 A G ALU SINE/Alu - - Intergenic - - 2 2 anterior hypothalamus;cerebellum |
chr1 18825482 A G ALU SINE/Alu - - Intergenic - - 2 2 cerebellum;posterior hypothalamus |
chr1 18825495 A G ALU SINE/Alu - - Intergenic - - 23 17 amygdala;anterior hippocampus;caudate nucleus;cerebellum;dentate gyrus;entorhinal cortex;geniculate nucleus;insular cortex;midbrain;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;septum;spinal cord dorsal;straight gyrus;substantia nigra;supramarginal gyrus |
chr1 18826561 A G ALU SINE/Alu - - Intergenic - - 5 4 caudate nucleus;cerebellum;pons;preoptic area |
chr1 18831264 A G ALU SINE/Alu - - Intergenic - - 3 2 cerebellum;septum |
chr1 18833025 A G REP LINE/L1 - - Intergenic - - 2 2 geniculate nucleus;spinal cord dorsal |
chr1 18837235 A G ALU SINE/Alu - - Intergenic - - 2 2 dentate gyrus;septum |
chr1 18905394 T C ALU SINE/Alu ENSMFAG00000036591:COG2 COG2 Intronic - - 7 7 annectant gyrus;cerebellum;cuneus;globus pallidus;inferior frontal gyrus;occipital gyrus;orbital gyrus |
chr1 18907153 T C ALU SINE/Alu ENSMFAG00000036591:COG2 COG2 Intronic - - 3 3 cuneus;occipital gyrus;posterior hippocampus |
chr1 18907171 T C ALU SINE/Alu ENSMFAG00000036591:COG2 COG2 Intronic - - 13 11 caudate nucleus;inferior frontal gyrus;insular cortex;lateral occipitotemporal gyrus;middle frontal gyrus;occipital gyrus;posterior cingulate gyrus;posterior parahippocampal gyrus;septum;straight gyrus;superior temporal gyrus |
chr1 18931803 T C REP DNA/hAT-Charlie ENSMFAG00000036591:COG2 COG2 Intronic - - 3 3 inferior temporal gyrus;pons;superior parietal lobule |
chr1 18931881 T C REP DNA/hAT-Charlie ENSMFAG00000036591:COG2 COG2 Intronic - - 29 20 annectant gyrus;anterior cingulate gyrus;cerebellum;cuneus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;precentral gyrus;spinal cord dorsal;straight gyrus;subiculum;superior parietal lobule;supramarginal gyrus;thalamus |
chr1 18931887 T C REP DNA/hAT-Charlie ENSMFAG00000036591:COG2 COG2 Intronic - - 40 26 amygdala;angular gyrus;anterior cingulate gyrus;cerebellum;claustrum;cuneus;entorhinal cortex;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;middle frontal gyrus;middle temporal gyrus;occipital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;precentral gyrus;spinal cord dorsal;subiculum;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus |
chr1 18932015 T C REP DNA/hAT-Charlie ENSMFAG00000036591:COG2 COG2 Intronic - - 4 3 occipital gyrus;precentral gyrus;spinal cord dorsal |
chr1 18942132 T C ALU SINE/Alu - - Intergenic - - 4 4 amygdala;lateral occipitotemporal gyrus;postcentral gyrus;posterior cingulate gyrus |
chr1 18970414 T C NONREP - - - Intergenic - - 2 2 postcentral gyrus;subiculum |
chr1 18971273 T C REP LTR/ERVL-MaLR - - Intergenic - - 7 7 amygdala;anterior cingulate gyrus;claustrum;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;straight gyrus |
chr1 18971293 T C REP LTR/ERVL-MaLR - - Intergenic - - 11 11 amygdala;anterior cingulate gyrus;claustrum;cuneus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;middle frontal gyrus;postcentral gyrus;putamen;straight gyrus |
chr1 18971350 T C REP LTR/ERVL-MaLR - - Intergenic - - 8 7 amygdala;entorhinal cortex;lateral occipitotemporal gyrus;middle temporal gyrus;orbital gyrus;posterior parahippocampal gyrus;superior temporal gyrus |
chr1 18971357 T C REP LTR/ERVL-MaLR - - Intergenic - - 5 5 amygdala;dentate gyrus;entorhinal cortex;posterior parahippocampal gyrus;superior temporal gyrus |
chr1 18971438 T C REP LTR/ERVL-MaLR - - Intergenic - - 2 2 insular cortex;lateral occipitotemporal gyrus |
chr1 18971470 T C REP LTR/ERVL-MaLR - - Intergenic - - 2 2 amygdala;geniculate nucleus |
chr1 18971596 T C REP LTR/ERVL-MaLR - - Intergenic - - 6 6 inferior occipital gyrus;middle frontal gyrus;pons;spinal cord dorsal;straight gyrus;supramarginal gyrus |
chr1 18971726 T C REP LTR/ERVL-MaLR - - Intergenic - - 3 3 amygdala;entorhinal cortex;middle frontal gyrus |
chr1 18971918 T C REP LTR/ERVL-MaLR - - Intergenic - - 6 6 amygdala;entorhinal cortex;orbital gyrus;posterior cingulate gyrus;posterior parahippocampal gyrus;subiculum |
chr1 18971929 T C REP LTR/ERVL-MaLR - - Intergenic - - 16 16 anterior cingulate gyrus;caudate nucleus;dentate gyrus;entorhinal cortex;geniculate nucleus;inferior temporal gyrus;insular cortex;middle temporal gyrus;orbital gyrus;postcentral gyrus;posterior hippocampus;posterior parahippocampal gyrus;precentral gyrus;spinal cord dorsal;subiculum;superior frontal gyrus |
chr1 18985453 T C REP LINE/L1 - - Intergenic - - 5 5 amygdala;anterior cingulate gyrus;subiculum;superior parietal lobule;superior temporal gyrus |
chr1 18985478 T C REP LINE/L1 - - Intergenic - - 2 2 amygdala;superior parietal lobule |
chr1 18985499 T C NONREP - - - Intergenic - - 2 2 subiculum;superior temporal gyrus |
chr1 18987178 T C NONREP - - - Intergenic - - 7 7 amygdala;cuneus;lateral occipitotemporal gyrus;orbital gyrus;posterior cingulate gyrus;posterior parahippocampal gyrus;thalamus |
chr1 18988620 T C ALU SINE/Alu - - Intergenic - - 2 2 amygdala;lateral occipitotemporal gyrus |
chr1 18989867 T C ALU SINE/Alu - - Intergenic - - 9 8 cuneus;entorhinal cortex;insular cortex;lateral occipitotemporal gyrus;occipital gyrus;orbital gyrus;posterior parahippocampal gyrus;subiculum |
chr1 18989875 T C ALU SINE/Alu - - Intergenic - - 21 21 amygdala;anterior cingulate gyrus;cuneus;entorhinal cortex;globus pallidus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;middle frontal gyrus;occipital gyrus;orbital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior parahippocampal gyrus;putamen;straight gyrus;subiculum;superior frontal gyrus;superior parietal lobule;superior temporal gyrus |
chr1 18993339 T C REP DNA/hAT-Blackjack - - Intergenic - - 3 3 anterior hippocampus;lateral occipitotemporal gyrus;supramarginal gyrus |
chr1 18993629 T C ALU SINE/Alu - - Intergenic - - 3 3 amygdala;lateral occipitotemporal gyrus;posterior parahippocampal gyrus |
chr1 18993630 T C ALU SINE/Alu - - Intergenic - - 2 2 amygdala;lateral occipitotemporal gyrus |
chr1 18996112 T C ALU SINE/Alu - - Intergenic - - 2 2 anterior cingulate gyrus;thalamus |
chr1 18996181 T C ALU SINE/Alu - - Intergenic - - 4 4 amygdala;entorhinal cortex;putamen;substantia nigra |
chr1 19015375 T C REP LINE/L1 - - Intergenic - - 7 7 amygdala;angular gyrus;inferior temporal gyrus;middle temporal gyrus;postcentral gyrus;posterior parahippocampal gyrus;straight gyrus |
chr1 19017335 T C REP LINE/L1 - - Intergenic - - 2 2 amygdala;posterior parahippocampal gyrus |
chr1 19020993 T C REP LINE/L1 - - Intergenic - - 16 14 caudate nucleus;dentate gyrus;entorhinal cortex;inferior temporal gyrus;lateral occipitotemporal gyrus;middle temporal gyrus;orbital gyrus;pons;posterior parahippocampal gyrus;precentral gyrus;straight gyrus;superior frontal gyrus;superior parietal lobule;superior temporal gyrus |
chr1 19021096 T C REP LINE/L1 - - Intergenic - - 6 6 anterior hippocampus;caudate nucleus;dentate gyrus;inferior frontal gyrus;insular cortex;superior parietal lobule |
chr1 19021108 T C REP LINE/L1 - - Intergenic - - 2 2 caudate nucleus;insular cortex |
chr1 19028120 T C REP LINE/L1 - - Intergenic - - 5 5 amygdala;anterior cingulate gyrus;lateral occipitotemporal gyrus;straight gyrus;superior temporal gyrus |
chr1 19028146 T C REP LINE/L1 - - Intergenic - - 6 6 amygdala;anterior cingulate gyrus;lateral occipitotemporal gyrus;straight gyrus;subiculum;superior temporal gyrus |
chr1 19032344 T C ALU SINE/Alu - - Intergenic - - 2 2 amygdala;lateral occipitotemporal gyrus |
chr1 19032363 T C ALU SINE/Alu - - Intergenic - - 16 11 amygdala;entorhinal cortex;lateral occipitotemporal gyrus;middle temporal gyrus;orbital gyrus;posterior parahippocampal gyrus;spinal cord dorsal;subiculum;superior frontal gyrus;superior parietal lobule;superior temporal gyrus |
chr1 19033743 T C REP LINE/L1 - - Intergenic - - 2 2 pons;posterior parahippocampal gyrus |
chr1 19033772 T C REP LINE/L1 - - Intergenic - - 3 3 insular cortex;posterior parahippocampal gyrus;spinal cord dorsal |
chr1 19038827 T C REP LINE/L1 - - Intergenic - - 2 2 amygdala;orbital gyrus |
chr1 19039534 T C ALU SINE/Alu - - Intergenic - - 2 2 insular cortex;posterior parahippocampal gyrus |
chr1 19039543 T C ALU SINE/Alu - - Intergenic - - 2 2 lateral occipitotemporal gyrus;thalamus |
chr1 19039590 T C ALU SINE/Alu - - Intergenic - - 2 2 amygdala;orbital gyrus |
chr1 19039604 T C ALU SINE/Alu - - Intergenic - - 3 3 amygdala;subiculum;substantia nigra |
chr1 19039605 T C ALU SINE/Alu - - Intergenic - - 4 4 amygdala;lateral occipitotemporal gyrus;orbital gyrus;straight gyrus |
chr1 19039683 T C ALU SINE/Alu - - Intergenic - - 7 7 anterior cingulate gyrus;lateral occipitotemporal gyrus;posterior cingulate gyrus;posterior parahippocampal gyrus;precentral gyrus;superior frontal gyrus;superior temporal gyrus |
chr1 19039694 T C ALU SINE/Alu - - Intergenic - - 3 3 amygdala;orbital gyrus;posterior parahippocampal gyrus |
chr1 19039715 T C ALU SINE/Alu - - Intergenic - - 2 2 amygdala;lateral occipitotemporal gyrus |
chr1 19039738 T C ALU SINE/Alu - - Intergenic - - 16 15 amygdala;anterior cingulate gyrus;claustrum;entorhinal cortex;geniculate nucleus;inferior frontal gyrus;lateral occipitotemporal gyrus;middle frontal gyrus;postcentral gyrus;posterior parahippocampal gyrus;precentral gyrus;putamen;straight gyrus;superior parietal lobule;supramarginal gyrus |
chr1 19039771 T C ALU SINE/Alu - - Intergenic - - 7 6 amygdala;entorhinal cortex;lateral occipitotemporal gyrus;posterior parahippocampal gyrus;precentral gyrus;superior frontal gyrus |
chr1 19039775 T C ALU SINE/Alu - - Intergenic - - 2 2 amygdala;superior frontal gyrus |
chr1 19042851 T C ALU SINE/Alu - - Intergenic - - 9 7 amygdala;entorhinal cortex;inferior frontal gyrus;insular cortex;posterior parahippocampal gyrus;putamen;straight gyrus |
chr1 19045217 T C REP LTR/ERVL - - Intergenic - - 2 2 angular gyrus;putamen |
chr1 19051543 T C ALU SINE/Alu - - Intergenic - - 5 5 amygdala;dentate gyrus;lateral occipitotemporal gyrus;orbital gyrus;substantia nigra |
chr1 19051604 T C ALU SINE/Alu - - Intergenic - - 8 7 amygdala;dentate gyrus;entorhinal cortex;inferior temporal gyrus;posterior cingulate gyrus;posterior parahippocampal gyrus;precentral gyrus |
chr1 19053577 T C REP LTR/ERVL-MaLR - - Intergenic - - 2 2 caudate nucleus;inferior temporal gyrus |
chr1 19054214 T C ALU SINE/Alu - - Intergenic - - 2 2 claustrum;subiculum |
chr1 19064462 T C REP LTR/ERV1 - - Intergenic - - 2 2 straight gyrus;superior temporal gyrus |
chr1 19064547 T C REP LTR/ERV1 - - Intergenic - - 16 13 amygdala;anterior cingulate gyrus;entorhinal cortex;globus pallidus;inferior frontal gyrus;occipital gyrus;postcentral gyrus;posterior hippocampus;posterior parahippocampal gyrus;precentral gyrus;putamen;superior parietal lobule;superior temporal gyrus |
chr1 19064789 T C REP LTR/ERV1 - - Intergenic - - 2 2 precentral gyrus;subiculum |
chr1 19064833 T C REP LTR/ERV1 - - Intergenic - - 2 2 globus pallidus;subiculum |
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