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chr1 19348865 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 amygdala;angular gyrus;pons
chr1 19348873 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 21 19 amygdala;angular gyrus;cerebellum;claustrum;cuneus;entorhinal cortex;insular cortex;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;subiculum;substantia nigra;superior parietal lobule;supramarginal gyrus
chr1 19348891 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 anterior hippocampus;claustrum;occipital gyrus;posterior hippocampus
chr1 19348892 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 7 7 anterior hippocampus;entorhinal cortex;midbrain;middle frontal gyrus;middle temporal gyrus;precentral gyrus;spinal cord dorsal
chr1 19348963 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 60 38 amygdala;angular gyrus;annectant gyrus;anterior cingulate gyrus;anterior hippocampus;anterior hypothalamus;caudate nucleus;cerebellum;claustrum;cuneus;dentate gyrus;entorhinal cortex;geniculate nucleus;inferior frontal gyrus;inferior occipital gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;posterior cingulate gyrus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;putamen;septum;spinal cord dorsal;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus;thalamus
chr1 19348964 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 17 15 claustrum;cuneus;dentate gyrus;entorhinal cortex;inferior frontal gyrus;lateral occipitotemporal gyrus;middle temporal gyrus;posterior parahippocampal gyrus;precentral gyrus;septum;spinal cord dorsal;straight gyrus;substantia nigra;superior frontal gyrus;superior temporal gyrus
chr1 19348992 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 dentate gyrus;lateral occipitotemporal gyrus;septum
chr1 19348998 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 occipital gyrus;posterior parahippocampal gyrus;supramarginal gyrus
chr1 19349092 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 19 16 claustrum;cuneus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;occipital gyrus;pons;posterior parahippocampal gyrus;precentral gyrus;septum;straight gyrus;subiculum;superior frontal gyrus;supramarginal gyrus;thalamus
chr1 19349093 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 cuneus;inferior frontal gyrus;middle temporal gyrus;postcentral gyrus
chr1 19349095 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 8 7 cuneus;inferior frontal gyrus;middle frontal gyrus;middle temporal gyrus;occipital gyrus;septum;spinal cord dorsal
chr1 19349105 T C REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 9 9 caudate nucleus;cerebellum;claustrum;cuneus;middle temporal gyrus;precentral gyrus;straight gyrus;substantia nigra;superior parietal lobule
chr1 19349743 A G REP LINE/L1 ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 entorhinal cortex;postcentral gyrus;precentral gyrus
chr1 19353381 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 entorhinal cortex;precentral gyrus
chr1 19361778 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 middle frontal gyrus;supramarginal gyrus
chr1 19361793 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 7 7 cerebellum;inferior temporal gyrus;preoptic area;septum;spinal cord dorsal;subiculum;superior parietal lobule
chr1 19361824 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 8 8 annectant gyrus;claustrum;lateral occipitotemporal gyrus;middle frontal gyrus;occipital gyrus;precentral gyrus;straight gyrus;superior parietal lobule
chr1 19361881 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 anterior cingulate gyrus;geniculate nucleus;superior parietal lobule
chr1 19361882 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 26 21 amygdala;angular gyrus;annectant gyrus;anterior cingulate gyrus;cerebellum;claustrum;geniculate nucleus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;lateral occipitotemporal gyrus;middle frontal gyrus;occipital gyrus;orbital gyrus;pons;posterior cingulate gyrus;posterior hypothalamus;precentral gyrus;substantia nigra;superior parietal lobule;superior temporal gyrus
chr1 19361930 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 38 32 amygdala;angular gyrus;annectant gyrus;anterior hippocampus;anterior hypothalamus;claustrum;cuneus;entorhinal cortex;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;medulla;midbrain;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;postcentral gyrus;posterior cingulate gyrus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior temporal gyrus;thalamus
chr1 19361946 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 36 29 amygdala;annectant gyrus;anterior cingulate gyrus;anterior hippocampus;caudate nucleus;cerebellum;claustrum;cuneus;dentate gyrus;geniculate nucleus;inferior frontal gyrus;inferior occipital gyrus;insular cortex;lateral occipitotemporal gyrus;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;postcentral gyrus;posterior hippocampus;precentral gyrus;putamen;septum;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior parietal lobule;supramarginal gyrus
chr1 19361955 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 52 38 amygdala;annectant gyrus;anterior cingulate gyrus;anterior hippocampus;caudate nucleus;cerebellum;claustrum;cuneus;geniculate nucleus;inferior frontal gyrus;inferior occipital gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;midbrain;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;putamen;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus;thalamus
chr1 19361963 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 inferior frontal gyrus;superior parietal lobule
chr1 19367200 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 inferior occipital gyrus;putamen
chr1 19367253 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 2 septum;superior parietal lobule
chr1 19368988 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 postcentral gyrus;putamen
chr1 19369007 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 15 14 cerebellum;claustrum;dentate gyrus;middle frontal gyrus;middle temporal gyrus;occipital gyrus;postcentral gyrus;posterior cingulate gyrus;septum;spinal cord dorsal;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus
chr1 19369064 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 amygdala;anterior cingulate gyrus;inferior frontal gyrus;orbital gyrus
chr1 19369093 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 claustrum;geniculate nucleus
chr1 19369095 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 anterior cingulate gyrus;claustrum;geniculate nucleus;straight gyrus
chr1 19369220 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 insular cortex;pons
chr1 19370993 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 7 7 anterior hypothalamus;cerebellum;claustrum;inferior occipital gyrus;insular cortex;lateral occipitotemporal gyrus;superior parietal lobule
chr1 19370996 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 putamen;septum
chr1 19371009 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 11 11 amygdala;caudate nucleus;cerebellum;geniculate nucleus;inferior frontal gyrus;lateral occipitotemporal gyrus;middle frontal gyrus;orbital gyrus;subiculum;superior frontal gyrus;superior parietal lobule
chr1 19371010 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 9 8 amygdala;anterior cingulate gyrus;caudate nucleus;inferior frontal gyrus;lateral occipitotemporal gyrus;spinal cord dorsal;subiculum;supramarginal gyrus
chr1 19371011 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 12 12 amygdala;claustrum;geniculate nucleus;inferior frontal gyrus;lateral occipitotemporal gyrus;middle frontal gyrus;postcentral gyrus;posterior parahippocampal gyrus;substantia nigra;superior frontal gyrus;superior parietal lobule;supramarginal gyrus
chr1 19371022 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 caudate nucleus;geniculate nucleus;inferior frontal gyrus;spinal cord dorsal
chr1 19371048 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 6 6 claustrum;geniculate nucleus;lateral occipitotemporal gyrus;postcentral gyrus;precentral gyrus;septum
chr1 19371157 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 inferior frontal gyrus;pons
chr1 19374835 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 occipital gyrus;pons;posterior parahippocampal gyrus
chr1 19374845 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 6 6 entorhinal cortex;inferior temporal gyrus;occipital gyrus;posterior cingulate gyrus;posterior hypothalamus;precentral gyrus
chr1 19374869 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 13 12 amygdala;angular gyrus;anterior cingulate gyrus;caudate nucleus;cerebellum;claustrum;lateral occipitotemporal gyrus;medulla;occipital gyrus;pons;posterior hypothalamus;precentral gyrus
chr1 19374897 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 angular gyrus;cerebellum;occipital gyrus;subiculum
chr1 19374907 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 inferior temporal gyrus;postcentral gyrus;superior temporal gyrus
chr1 19374981 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 posterior hippocampus;supramarginal gyrus
chr1 19374987 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 46 32 amygdala;annectant gyrus;anterior hippocampus;anterior hypothalamus;caudate nucleus;claustrum;geniculate nucleus;globus pallidus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;posterior cingulate gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;superior colliculus;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus;thalamus
chr1 19375003 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 10 10 anterior hypothalamus;dentate gyrus;insular cortex;lateral occipitotemporal gyrus;orbital gyrus;posterior hippocampus;putamen;spinal cord dorsal;superior frontal gyrus;superior parietal lobule
chr1 19375020 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 geniculate nucleus;spinal cord dorsal
chr1 19375034 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 9 9 angular gyrus;annectant gyrus;cuneus;globus pallidus;inferior temporal gyrus;occipital gyrus;orbital gyrus;postcentral gyrus;superior parietal lobule
chr1 19375050 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 18 17 amygdala;cuneus;geniculate nucleus;inferior frontal gyrus;insular cortex;middle temporal gyrus;orbital gyrus;pons;posterior cingulate gyrus;posterior hypothalamus;precentral gyrus;putamen;septum;straight gyrus;subiculum;supramarginal gyrus;thalamus
chr1 19375068 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 35 26 amygdala;anterior cingulate gyrus;anterior hippocampus;anterior hypothalamus;caudate nucleus;cuneus;geniculate nucleus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;midbrain;middle frontal gyrus;occipital gyrus;orbital gyrus;pons;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;septum;spinal cord dorsal;straight gyrus;substantia nigra;superior frontal gyrus;superior parietal lobule
chr1 19375088 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 anterior cingulate gyrus;lateral occipitotemporal gyrus;middle frontal gyrus;occipital gyrus
chr1 19375096 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 6 5 inferior temporal gyrus;orbital gyrus;precentral gyrus;putamen;straight gyrus
chr1 19375102 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 15 14 amygdala;annectant gyrus;anterior hippocampus;claustrum;geniculate nucleus;middle frontal gyrus;occipital gyrus;orbital gyrus;postcentral gyrus;septum;straight gyrus;subiculum;substantia nigra;superior frontal gyrus
chr1 19387513 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 32 29 amygdala;angular gyrus;caudate nucleus;cuneus;dentate gyrus;entorhinal cortex;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;midbrain;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;posterior cingulate gyrus;posterior parahippocampal gyrus;precentral gyrus;preoptic area;septum;spinal cord dorsal;straight gyrus;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus;thalamus
chr1 19387626 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 lateral occipitotemporal gyrus;superior frontal gyrus
chr1 19387634 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 20 19 amygdala;anterior hypothalamus;geniculate nucleus;globus pallidus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;posterior cingulate gyrus;precentral gyrus;septum;spinal cord dorsal;spinal cord ventral;superior frontal gyrus;superior parietal lobule;supramarginal gyrus
chr1 19387698 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 geniculate nucleus;precentral gyrus
chr1 19387740 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 12 9 annectant gyrus;inferior temporal gyrus;lateral occipitotemporal gyrus;middle temporal gyrus;orbital gyrus;pons;postcentral gyrus;precentral gyrus;superior parietal lobule
chr1 19395129 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 inferior frontal gyrus;insular cortex
chr1 19398845 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 inferior frontal gyrus;spinal cord dorsal
chr1 19398856 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 8 7 amygdala;inferior frontal gyrus;insular cortex;middle frontal gyrus;septum;spinal cord dorsal;superior frontal gyrus
chr1 19439242 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 anterior hypothalamus;cerebellum
chr1 19439347 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 6 6 amygdala;geniculate nucleus;middle frontal gyrus;posterior cingulate gyrus;superior frontal gyrus;superior parietal lobule
chr1 19439439 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 globus pallidus;straight gyrus
chr1 19442323 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 8 8 anterior hypothalamus;geniculate nucleus;lateral occipitotemporal gyrus;middle frontal gyrus;orbital gyrus;precentral gyrus;superior parietal lobule;supramarginal gyrus
chr1 19442362 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 orbital gyrus;putamen
chr1 19442377 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 6 6 amygdala;annectant gyrus;anterior cingulate gyrus;cuneus;entorhinal cortex;occipital gyrus
chr1 19442386 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 anterior cingulate gyrus;entorhinal cortex;middle frontal gyrus;orbital gyrus
chr1 19442445 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 8 8 amygdala;claustrum;insular cortex;orbital gyrus;septum;straight gyrus;superior parietal lobule;superior temporal gyrus
chr1 19442481 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 cerebellum;entorhinal cortex;orbital gyrus
chr1 19442501 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 entorhinal cortex;middle frontal gyrus;posterior hypothalamus
chr1 19442962 T C NONREP - ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 22 20 amygdala;anterior cingulate gyrus;inferior frontal gyrus;inferior temporal gyrus;lateral occipitotemporal gyrus;middle frontal gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior parahippocampal gyrus;precentral gyrus;putamen;septum;spinal cord dorsal;straight gyrus;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus
chr1 19443733 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 middle frontal gyrus;precentral gyrus;superior parietal lobule
chr1 19443742 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 8 7 amygdala;insular cortex;lateral occipitotemporal gyrus;middle frontal gyrus;precentral gyrus;substantia nigra;supramarginal gyrus
chr1 19443844 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 cerebellum;septum;superior parietal lobule
chr1 19443935 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 29 26 angular gyrus;annectant gyrus;anterior cingulate gyrus;entorhinal cortex;geniculate nucleus;inferior frontal gyrus;inferior occipital gyrus;insular cortex;middle frontal gyrus;middle temporal gyrus;occipital gyrus;postcentral gyrus;posterior cingulate gyrus;posterior hippocampus;posterior parahippocampal gyrus;precentral gyrus;preoptic area;putamen;septum;spinal cord dorsal;subiculum;substantia nigra;superior colliculus;superior frontal gyrus;superior parietal lobule;superior temporal gyrus
chr1 19449620 T C NONREP - ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 inferior occipital gyrus;inferior temporal gyrus;occipital gyrus
chr1 19452903 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 insular cortex;precentral gyrus
chr1 19469797 T C NONREP - ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 globus pallidus;middle temporal gyrus
chr1 19471793 T C NONREP - ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 58 39 amygdala;angular gyrus;annectant gyrus;anterior cingulate gyrus;anterior hippocampus;caudate nucleus;claustrum;cuneus;entorhinal cortex;geniculate nucleus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;midbrain;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;putamen;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;subiculum;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus;thalamus
chr1 19471794 T C NONREP - ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 14 13 amygdala;anterior cingulate gyrus;anterior hippocampus;caudate nucleus;lateral occipitotemporal gyrus;occipital gyrus;postcentral gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;spinal cord dorsal;thalamus
chr1 19471979 T C REP Simple_repeat ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 13 11 amygdala;claustrum;geniculate nucleus;inferior occipital gyrus;insular cortex;posterior cingulate gyrus;precentral gyrus;spinal cord dorsal;straight gyrus;subiculum;supramarginal gyrus
chr1 19472150 T C REP Simple_repeat ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 septum;substantia nigra
chr1 19472949 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 3 3 amygdala;claustrum;posterior hypothalamus
chr1 19473032 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 7 7 amygdala;cerebellum;geniculate nucleus;inferior occipital gyrus;precentral gyrus;superior frontal gyrus;supramarginal gyrus
chr1 19473142 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 3 amygdala;claustrum;superior parietal lobule
chr1 19473183 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 24 21 amygdala;anterior cingulate gyrus;anterior hippocampus;cuneus;dentate gyrus;geniculate nucleus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;middle frontal gyrus;middle temporal gyrus;orbital gyrus;posterior cingulate gyrus;posterior hypothalamus;precentral gyrus;putamen;straight gyrus;subiculum;superior parietal lobule;supramarginal gyrus;thalamus
chr1 19473690 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 caudate nucleus;precentral gyrus
chr1 19473692 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 6 6 cerebellum;insular cortex;postcentral gyrus;precentral gyrus;septum;subiculum
chr1 19473701 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 42 38 amygdala;angular gyrus;annectant gyrus;anterior cingulate gyrus;anterior hippocampus;anterior hypothalamus;caudate nucleus;cerebellum;claustrum;cuneus;entorhinal cortex;geniculate nucleus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;midbrain;middle frontal gyrus;middle temporal gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;septum;spinal cord ventral;straight gyrus;subiculum;substantia nigra;superior colliculus;superior frontal gyrus;supramarginal gyrus;thalamus
chr1 19473768 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 20 19 annectant gyrus;cerebellum;claustrum;globus pallidus;inferior occipital gyrus;insular cortex;lateral occipitotemporal gyrus;middle temporal gyrus;orbital gyrus;pons;posterior cingulate gyrus;posterior hypothalamus;putamen;septum;subiculum;superior frontal gyrus;superior parietal lobule;supramarginal gyrus;thalamus
chr1 19473770 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 7 7 cerebellum;claustrum;entorhinal cortex;globus pallidus;inferior occipital gyrus;insular cortex;putamen
chr1 19473793 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 3 claustrum;posterior hypothalamus;superior parietal lobule
chr1 19473797 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 2 2 claustrum;subiculum
chr1 19473802 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 66 41 amygdala;angular gyrus;annectant gyrus;anterior cingulate gyrus;anterior hippocampus;anterior hypothalamus;caudate nucleus;cerebellum;claustrum;cuneus;dentate gyrus;entorhinal cortex;geniculate nucleus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;midbrain;middle frontal gyrus;middle temporal gyrus;orbital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;putamen;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;subiculum;superior colliculus;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus
chr1 19473803 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 32 22 amygdala;anterior cingulate gyrus;claustrum;cuneus;geniculate nucleus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;lateral occipitotemporal gyrus;medulla;middle frontal gyrus;middle temporal gyrus;occipital gyrus;pons;posterior cingulate gyrus;posterior parahippocampal gyrus;precentral gyrus;putamen;septum;straight gyrus;subiculum;supramarginal gyrus
chr1 19473829 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 annectant gyrus;inferior occipital gyrus;middle frontal gyrus;posterior hypothalamus
chr1 19473847 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 cuneus;inferior occipital gyrus;inferior temporal gyrus;middle frontal gyrus
chr1 19473852 T C ALU SINE/Alu ENSMFAG00000043385:GALNT2 GALNT2 Intronic - - 4 4 claustrum;middle frontal gyrus;septum;superior frontal gyrus