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chr1 4428680 A G ALU SINE/Alu - - Intergenic - - 2 2 posterior hypothalamus;spinal cord ventral
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chr1 4429276 A G ALU SINE/Alu - - Intergenic - - 4 4 cerebellum;midbrain;posterior hippocampus;putamen
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chr1 4429281 A G ALU SINE/Alu - - Intergenic - - 2 2 straight gyrus;superior parietal lobule
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chr1 4429294 A G ALU SINE/Alu - - Intergenic - - 4 4 caudate nucleus;cerebellum;septum;spinal cord dorsal
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chr1 4429317 A G ALU SINE/Alu - - Intergenic - - 2 2 pons;spinal cord dorsal
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chr1 4429429 A G ALU SINE/Alu - - Intergenic - - 7 7 cerebellum;lateral occipitotemporal gyrus;postcentral gyrus;posterior hypothalamus;preoptic area;putamen;superior colliculus
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chr1 4458285 A G ALU SINE/Alu - - Intergenic - - 3 3 cerebellum;postcentral gyrus;precentral gyrus
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chr1 4458346 A G ALU SINE/Alu - - Intergenic - - 3 3 cerebellum;middle frontal gyrus;precentral gyrus
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chr1 4510884 A G ALU SINE/Alu - - Intergenic - - 2 1 cerebellum
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chr1 4510949 A G ALU SINE/Alu - - Intergenic - - 2 1 cerebellum
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chr1 4512809 A G ALU SINE/Alu - - Intergenic - - 4 3 cerebellum;superior temporal gyrus;supramarginal gyrus
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chr1 4515297 A G ALU SINE/Alu - - Intergenic - - 3 2 anterior hypothalamus;cerebellum
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chr1 4516062 A G ALU SINE/Alu - - Intergenic - - 4 2 cerebellum;middle temporal gyrus
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chr1 4517403 A G ALU SINE/Alu - - Intergenic - - 2 1 cerebellum
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chr1 4581030 A G ALU SINE/Alu - - Intergenic - - 49 35 amygdala;anterior cingulate gyrus;caudate nucleus;cerebellum;claustrum;cuneus;dentate gyrus;entorhinal cortex;geniculate nucleus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;midbrain;middle frontal gyrus;occipital gyrus;pons;postcentral gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;subiculum;substantia nigra;superior colliculus;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;thalamus
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chr1 4581041 A G ALU SINE/Alu - - Intergenic - - 12 12 amygdala;annectant gyrus;cerebellum;lateral occipitotemporal gyrus;middle frontal gyrus;middle temporal gyrus;occipital gyrus;postcentral gyrus;posterior hippocampus;posterior parahippocampal gyrus;superior colliculus;superior parietal lobule
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chr1 4581054 A G ALU SINE/Alu - - Intergenic - - 38 32 amygdala;angular gyrus;anterior cingulate gyrus;caudate nucleus;claustrum;entorhinal cortex;globus pallidus;inferior frontal gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;midbrain;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;postcentral gyrus;posterior cingulate gyrus;posterior hippocampus;posterior hypothalamus;precentral gyrus;preoptic area;putamen;septum;spinal cord dorsal;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus
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chr1 4581061 A G ALU SINE/Alu - - Intergenic - - 10 10 anterior hypothalamus;caudate nucleus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;middle frontal gyrus;posterior hippocampus;superior frontal gyrus;superior parietal lobule;supramarginal gyrus
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chr1 4581065 A G ALU SINE/Alu - - Intergenic - - 23 21 angular gyrus;cerebellum;cuneus;geniculate nucleus;inferior frontal gyrus;inferior occipital gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;postcentral gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;septum;spinal cord dorsal;straight gyrus;subiculum;superior temporal gyrus;supramarginal gyrus
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chr1 4581087 A G ALU SINE/Alu - - Intergenic - - 2 2 annectant gyrus;precentral gyrus
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chr1 4581090 A G ALU SINE/Alu - - Intergenic - - 6 6 amygdala;entorhinal cortex;middle temporal gyrus;orbital gyrus;subiculum;thalamus
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chr1 4581100 A G ALU SINE/Alu - - Intergenic - - 63 41 amygdala;angular gyrus;annectant gyrus;anterior cingulate gyrus;anterior hypothalamus;caudate nucleus;cerebellum;claustrum;cuneus;entorhinal cortex;geniculate nucleus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;midbrain;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;putamen;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus;thalamus
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chr1 4581102 A G ALU SINE/Alu - - Intergenic - - 7 7 amygdala;cuneus;insular cortex;medulla;postcentral gyrus;posterior hypothalamus;superior frontal gyrus
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chr1 4581110 A G ALU SINE/Alu - - Intergenic - - 34 28 amygdala;annectant gyrus;anterior cingulate gyrus;caudate nucleus;cerebellum;claustrum;cuneus;entorhinal cortex;globus pallidus;inferior occipital gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;middle frontal gyrus;middle temporal gyrus;postcentral gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;septum;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus
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chr1 4581147 A G ALU SINE/Alu - - Intergenic - - 18 16 anterior hypothalamus;entorhinal cortex;globus pallidus;inferior occipital gyrus;insular cortex;midbrain;middle temporal gyrus;pons;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;preoptic area;straight gyrus;superior frontal gyrus;superior temporal gyrus
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chr1 4581164 A G ALU SINE/Alu - - Intergenic - - 11 10 anterior cingulate gyrus;cerebellum;globus pallidus;inferior occipital gyrus;lateral occipitotemporal gyrus;medulla;occipital gyrus;postcentral gyrus;posterior parahippocampal gyrus;spinal cord dorsal
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chr1 4581217 T C ALU SINE/Alu - - Intergenic - - 4 4 anterior cingulate gyrus;cerebellum;medulla;preoptic area
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chr1 4581226 A G ALU SINE/Alu - - Intergenic - - 2 2 occipital gyrus;orbital gyrus
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chr1 4581227 A G ALU SINE/Alu - - Intergenic - - 9 8 amygdala;annectant gyrus;middle temporal gyrus;occipital gyrus;postcentral gyrus;posterior parahippocampal gyrus;precentral gyrus;spinal cord dorsal
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chr1 4581228 A G ALU SINE/Alu - - Intergenic - - 8 8 annectant gyrus;cerebellum;insular cortex;middle temporal gyrus;pons;septum;spinal cord ventral;superior frontal gyrus
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chr1 4581240 A G ALU SINE/Alu - - Intergenic - - 34 26 amygdala;angular gyrus;annectant gyrus;anterior hypothalamus;caudate nucleus;cerebellum;claustrum;dentate gyrus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;posterior parahippocampal gyrus;precentral gyrus;preoptic area;septum;spinal cord dorsal;straight gyrus;superior frontal gyrus;superior parietal lobule;superior temporal gyrus
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chr1 4581245 T C ALU SINE/Alu - - Intergenic - - 9 7 angular gyrus;anterior cingulate gyrus;cerebellum;orbital gyrus;septum;substantia nigra;superior parietal lobule
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chr1 4581604 T C ALU SINE/Alu - - Intergenic - - 12 11 caudate nucleus;cerebellum;geniculate nucleus;globus pallidus;insular cortex;lateral occipitotemporal gyrus;middle temporal gyrus;posterior hippocampus;posterior parahippocampal gyrus;spinal cord dorsal;substantia nigra
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chr1 4581626 T C ALU SINE/Alu - - Intergenic - - 7 6 caudate nucleus;cerebellum;cuneus;globus pallidus;orbital gyrus;spinal cord dorsal
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chr1 4581656 A G ALU SINE/Alu - - Intergenic - - 11 11 amygdala;anterior cingulate gyrus;caudate nucleus;globus pallidus;midbrain;postcentral gyrus;precentral gyrus;preoptic area;septum;subiculum;superior parietal lobule
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chr1 4581682 A G ALU SINE/Alu - - Intergenic - - 6 6 inferior temporal gyrus;lateral occipitotemporal gyrus;preoptic area;subiculum;superior frontal gyrus;superior parietal lobule
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chr1 4581711 A G ALU SINE/Alu - - Intergenic - - 2 2 inferior temporal gyrus;insular cortex
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chr1 4581715 A G ALU SINE/Alu - - Intergenic - - 3 3 globus pallidus;medulla;superior frontal gyrus
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chr1 4581727 A G ALU SINE/Alu - - Intergenic - - 37 28 amygdala;angular gyrus;anterior cingulate gyrus;anterior hypothalamus;cerebellum;dentate gyrus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;middle frontal gyrus;middle temporal gyrus;occipital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior parahippocampal gyrus;precentral gyrus;preoptic area;septum;spinal cord dorsal;subiculum;substantia nigra;superior frontal gyrus;supramarginal gyrus;thalamus
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chr1 4581737 A G ALU SINE/Alu - - Intergenic - - 23 20 amygdala;cerebellum;dentate gyrus;entorhinal cortex;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;middle temporal gyrus;pons;posterior cingulate gyrus;posterior parahippocampal gyrus;precentral gyrus;preoptic area;putamen;septum;spinal cord dorsal;straight gyrus;substantia nigra;superior frontal gyrus
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chr1 4581738 A G ALU SINE/Alu - - Intergenic - - 20 20 amygdala;dentate gyrus;globus pallidus;inferior occipital gyrus;inferior temporal gyrus;lateral occipitotemporal gyrus;middle frontal gyrus;middle temporal gyrus;posterior cingulate gyrus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;preoptic area;putamen;septum;spinal cord dorsal;straight gyrus;subiculum;superior frontal gyrus;superior temporal gyrus
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chr1 4581747 A G ALU SINE/Alu - - Intergenic - - 2 2 subiculum;superior temporal gyrus
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chr1 4581779 A G ALU SINE/Alu - - Intergenic - - 20 18 cuneus;geniculate nucleus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;medulla;middle temporal gyrus;orbital gyrus;pons;precentral gyrus;septum;spinal cord dorsal;straight gyrus;subiculum;superior frontal gyrus;superior temporal gyrus;thalamus
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chr1 4581799 A G ALU SINE/Alu - - Intergenic - - 2 2 entorhinal cortex;lateral occipitotemporal gyrus
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chr1 4581801 T C ALU SINE/Alu - - Intergenic - - 3 3 geniculate nucleus;globus pallidus;insular cortex
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chr1 4581807 A G ALU SINE/Alu - - Intergenic - - 76 45 amygdala;angular gyrus;annectant gyrus;anterior cingulate gyrus;anterior hippocampus;anterior hypothalamus;caudate nucleus;cerebellum;claustrum;cuneus;dentate gyrus;entorhinal cortex;geniculate nucleus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;midbrain;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;preoptic area;putamen;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus;thalamus
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chr1 4581808 A G ALU SINE/Alu - - Intergenic - - 68 43 amygdala;annectant gyrus;anterior cingulate gyrus;anterior hippocampus;anterior hypothalamus;caudate nucleus;cerebellum;cuneus;dentate gyrus;entorhinal cortex;geniculate nucleus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;midbrain;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;preoptic area;putamen;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus;thalamus
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chr1 4581813 A G ALU SINE/Alu - - Intergenic - - 76 43 amygdala;angular gyrus;annectant gyrus;anterior cingulate gyrus;caudate nucleus;cerebellum;claustrum;cuneus;dentate gyrus;entorhinal cortex;geniculate nucleus;globus pallidus;inferior frontal gyrus;inferior occipital gyrus;inferior temporal gyrus;insular cortex;lateral occipitotemporal gyrus;medulla;midbrain;middle frontal gyrus;middle temporal gyrus;occipital gyrus;orbital gyrus;pons;postcentral gyrus;posterior cingulate gyrus;posterior hippocampus;posterior hypothalamus;posterior parahippocampal gyrus;precentral gyrus;preoptic area;putamen;septum;spinal cord dorsal;spinal cord ventral;straight gyrus;subiculum;substantia nigra;superior frontal gyrus;superior parietal lobule;superior temporal gyrus;supramarginal gyrus;thalamus
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chr1 4581837 A G ALU SINE/Alu - - Intergenic - - 2 2 geniculate nucleus;posterior hypothalamus
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chr1 4582853 T C ALU SINE/Alu - - Intergenic - - 3 3 cerebellum;inferior occipital gyrus;posterior parahippocampal gyrus
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chr1 4617406 A G ALU SINE/Alu - - Intergenic - - 3 3 annectant gyrus;globus pallidus;septum
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chr1 4617428 A G ALU SINE/Alu - - Intergenic - - 4 4 globus pallidus;medulla;septum;superior temporal gyrus
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chr1 4624794 A G ALU SINE/Alu - - Intergenic - - 2 2 middle temporal gyrus;straight gyrus
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chr1 4659681 A G ALU SINE/Alu - - Intergenic - - 2 1 putamen
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chr1 4660177 A G ALU SINE/Alu - - Intergenic - - 3 3 caudate nucleus;globus pallidus;putamen
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chr1 4661671 A G ALU SINE/Alu - - Intergenic - - 2 2 caudate nucleus;putamen
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chr1 4661695 A G ALU SINE/Alu - - Intergenic - - 8 5 caudate nucleus;claustrum;geniculate nucleus;globus pallidus;putamen
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chr1 4662369 A G ALU SINE/Alu - - Intergenic - - 3 3 caudate nucleus;globus pallidus;putamen
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chr1 4662376 A G ALU SINE/Alu - - Intergenic - - 3 2 caudate nucleus;putamen
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chr1 4668151 A G ALU SINE/Alu - - Intergenic - - 3 2 claustrum;globus pallidus
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chr1 4668287 A G ALU SINE/Alu - - Intergenic - - 2 2 caudate nucleus;globus pallidus
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chr1 4684184 A G ALU SINE/Alu - - Intergenic - - 3 3 caudate nucleus;geniculate nucleus;globus pallidus
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chr1 4684724 A G ALU SINE/Alu - - Intergenic - - 9 5 caudate nucleus;claustrum;geniculate nucleus;globus pallidus;putamen
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chr1 4684730 A G ALU SINE/Alu - - Intergenic - - 4 3 caudate nucleus;geniculate nucleus;putamen
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chr1 4684773 A G ALU SINE/Alu - - Intergenic - - 2 2 globus pallidus;putamen
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chr1 4684777 A G ALU SINE/Alu - - Intergenic - - 4 4 caudate nucleus;claustrum;geniculate nucleus;putamen
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chr1 4687964 A G ALU SINE/Alu - - Intergenic - - 3 3 caudate nucleus;globus pallidus;putamen
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chr1 4688398 A G ALU SINE/Alu - - Intergenic - - 3 2 caudate nucleus;putamen
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chr1 4688437 A G ALU SINE/Alu - - Intergenic - - 3 2 caudate nucleus;geniculate nucleus
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chr1 4688444 A G ALU SINE/Alu - - Intergenic - - 2 1 caudate nucleus
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chr1 4688472 A G ALU SINE/Alu - - Intergenic - - 3 3 caudate nucleus;geniculate nucleus;putamen
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chr1 4688720 A G ALU SINE/Alu - - Intergenic - - 2 2 caudate nucleus;geniculate nucleus
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chr1 4692205 A G ALU SINE/Alu - - Intergenic - - 3 2 caudate nucleus;putamen
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chr1 4692229 A G ALU SINE/Alu - - Intergenic - - 3 3 geniculate nucleus;globus pallidus;putamen
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chr1 4692387 A G ALU SINE/Alu - - Intergenic - - 5 3 caudate nucleus;geniculate nucleus;putamen
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chr1 4693487 A G ALU SINE/Alu - - Intergenic - - 2 2 geniculate nucleus;globus pallidus
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chr1 4714812 A G NONREP - - - Intergenic - - 5 4 caudate nucleus;geniculate nucleus;globus pallidus;putamen
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chr1 4715339 A G ALU SINE/Alu - - Intergenic - - 4 4 caudate nucleus;geniculate nucleus;globus pallidus;putamen
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chr1 4715485 A G ALU SINE/Alu - - Intergenic - - 2 2 caudate nucleus;putamen
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chr1 4715740 A G ALU SINE/Alu - - Intergenic - - 6 4 caudate nucleus;geniculate nucleus;globus pallidus;putamen
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chr1 4715748 A G ALU SINE/Alu - - Intergenic - - 3 3 caudate nucleus;geniculate nucleus;putamen
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chr1 4718499 A G ALU SINE/Alu - - Intergenic - - 5 4 caudate nucleus;geniculate nucleus;globus pallidus;putamen
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chr1 4718717 A G ALU SINE/Alu - - Intergenic - - 3 2 caudate nucleus;putamen
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chr1 4718953 A G ALU SINE/Alu - - Intergenic - - 4 3 caudate nucleus;globus pallidus;putamen
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chr1 4718965 A G ALU SINE/Alu - - Intergenic - - 3 3 caudate nucleus;geniculate nucleus;globus pallidus
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chr1 4718967 A G ALU SINE/Alu - - Intergenic - - 3 3 caudate nucleus;globus pallidus;putamen
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chr1 4718971 A G ALU SINE/Alu - - Intergenic - - 5 4 caudate nucleus;geniculate nucleus;globus pallidus;putamen
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chr1 4722052 A G ALU SINE/Alu - - Intergenic - - 7 5 caudate nucleus;claustrum;geniculate nucleus;globus pallidus;putamen
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chr1 4722098 A G ALU SINE/Alu - - Intergenic - - 5 3 geniculate nucleus;globus pallidus;putamen
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chr1 4722114 A G ALU SINE/Alu - - Intergenic - - 2 2 caudate nucleus;claustrum
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chr1 4723065 A G ALU SINE/Alu - - Intergenic - - 2 2 globus pallidus;putamen
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chr1 4725030 A G ALU SINE/Alu - - Intergenic - - 3 2 caudate nucleus;geniculate nucleus
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chr1 4726503 A G ALU SINE/Alu - - Intergenic - - 2 2 geniculate nucleus;globus pallidus
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chr1 4726556 A G ALU SINE/Alu - - Intergenic - - 4 3 caudate nucleus;globus pallidus;putamen
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chr1 4727852 A G ALU SINE/Alu - - Intergenic - - 3 2 caudate nucleus;putamen
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chr1 4727873 A G ALU SINE/Alu - - Intergenic - - 2 1 putamen
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chr1 4728676 A G ALU SINE/Alu - - Intergenic - - 2 2 geniculate nucleus;putamen
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chr1 4728755 A G ALU SINE/Alu - - Intergenic - - 2 2 caudate nucleus;putamen
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chr1 4737765 T C ALU SINE/Alu ENSMFAG00000032549:DESI2 DESI2 Intronic - - 2 2 middle frontal gyrus;putamen
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chr1 4737771 T C ALU SINE/Alu ENSMFAG00000032549:DESI2 DESI2 Intronic - - 24 19 amygdala;angular gyrus;cerebellum;geniculate nucleus;inferior occipital gyrus;middle frontal gyrus;orbital gyrus;pons;posterior cingulate gyrus;posterior hippocampus;posterior parahippocampal gyrus;putamen;septum;spinal cord dorsal;spinal cord ventral;superior colliculus;superior frontal gyrus;superior parietal lobule;superior temporal gyrus
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