| --- |
| license: cc-by-4.0 |
| tags: |
| - rna |
| - rna-rna-interaction |
| - attention |
| - interpretability |
| --- |
| |
| # MARRI headline model — test-set interpretability export |
|
|
| Per-sample interpretability/diagnostics for the MARRI headline configuration |
| (`dyn ft-rnafm`, seed 42 — RNA-FM fine-tuned, RNet2D frozen, dynamic negative |
| resampling), evaluated on the fixed held-out test split (n=16,058 pairs, |
| seed 42). |
|
|
| Code and training/evidence logs: https://github.com/GainGod-Xu/MARRI |
|
|
| ## Files |
|
|
| - `marri_ft-rnafm_dyn_bs4_seed42_test_results_interpretability.h5` — per-sample |
| diagnostics: cross-attention maps (A→B, B→A) at every fusion layer (global |
| and local-window scope), the hybridization-gain (H_ij) matrices, fused |
| logits, opening-penalty terms, and RNet2D per-base structural features, all |
| in fp16 with gzip compression, plus per-sample metadata (sequence IDs, raw |
| sequences, local-window coordinates, gene type/genomic context). |
| - `marri_ft-rnafm_dyn_bs4_seed42_test_results.h5` — the corresponding |
| predictions/probabilities/targets/ROC and PR curves for the same test run |
| (test ROC-AUC 0.7530, PR-AUC 0.7346, Accuracy 0.6830, Precision 0.6663, |
| Recall 0.7255, F1 0.6947, MCC 0.3677). |
| |
| Generated by re-running the test/export phase against the already-trained |
| checkpoint (no retraining); metrics are identical to the ones reported for |
| this run in the paper. |
| |
