taxid int64 10.2k 3.46M | sequences listlengths 1 62 |
|---|---|
2,982,069 | [
"AGTCCGTTGTAAAATTTAATCAGGATTGATCAAAAAGTCCGTCAGTCCATCGCGAGCGAACCTTTTTCTTGCAGGCAATTCCCCTCAATCGAGCAGCCCCTTTCCCGTATCAACGCACTTCCCAACGGTTTGGCAAAGGTTTTGTTCTGCACCCTAGTCTAAATTGTTTTGCAGGATTTCATGGCTTCTGGTTCGAATCGCCCTCTTCACAATATCCGGCCTGACACTCTCGCCCCCCTTCGTGAGAAGATTCAACGCGCCACGGCGTTAATGGTTTCAATTGGGTTTAACGCCGCCGTCCTCACTGAGAGGGAA... |
335,326 | [
"AGCAAAAGCAGGGGATAATTCTATTAACCATGAAGACTATCATTGCTTTGAGCTACATTCTATGTCTGGTTTTCGCTCAAAAACTTCCCGGAAATGACAACAGCACGGCAACGCTGTGCCTTGGGCACCATGCAGTACCAAACGGAACGATAGTGAAAACAATCACGAATGACCAAATTGAAGTTACTAATGCTACTGAGCTGGTTCAGAGTTCCTCAACAGGTGGAATATGCGACAGTCCTCATCAGATCCTTGATGGAGAAAACTGCACACTAATAGATGCTCTATTGGGAGACCCTCAGTGTGATGGCTTCC... |
1,086,883 | [
"TAATTCTATTAACCATGAAGACTATCATTGCTTTGAGCTACATTTTATGTCTGGTTTTCGCCCAAAAACTTCCCGGAAATGACAACAGCACAGCAACGCTGTGCCTGGGGCATCATGCAGTGCCAAACGGAACTCTAGTGAAAACAATCACGAATGATCAAATTGAAGTGACTAATGCTACTGAGCTGGTTCAGAGTTCCTCAACAGGTAAAATATGCGACAGTCCTCACCGAATCCTCGATGGAAAAAACTGCACACTGATAGATGCTCTATTGGGAGACCCTCATTGTGATGACTTCCAAAATAAGGAATGGG... |
1,731,436 | [
"ATGGATTCCAACACTGTGTCAAGTTTCCAGGTAGATTGCTTTCTTTGGCATATCCGGAAACAAGTTGTAGACCAAAAACTGAGTGATGCCCCATTCCTCGATCGGCTTCGCCGAGATCAGAGGTCCCTAAGGGGAAGAGGCAATACTCTCGGTCTAGACATCAAAGCAGCCACCCATGTTGGAAAGCAAATCGTAGAAAAGATTCTGAAAGAAGAATCTGATGAGGCACTTAAAATGACCATGGTCTCAACACCTGCTTCGCGATACATAACTGACATGACTATTGAGGAATTGTCAAGAAACTGGTTCATGCTA... |
1,275,938 | [
"TTTCTAATATCCACAAAATGAAGGCAATAATTGTACTACTCATGGTAGTAACATCCAATGCAGATCGAATCTGCACTGGGATAACATCGTCAAACTCACCACATGTAGTCAAAACTGCTACTCAAGGGGAGGTCAATGTGACTGGTGTAATACCACTGACAACAACACCCACCAAATCTCATTTTGCAAATCTCAAAGGAACAGAAACCAGAGGGAAACTATGCCCAAAATGCCCCAACTGCACAGATTTGGACGTAGCCTTGGGCAGACCAAAATGCACGGGGAAAATACCCTCTGCAAGAGTTTCAATACTCC... |
1,934,278 | [
"GGCGTCTAACGACGCTAACGTTGCCGTTGCTTACAACAACAACAACGACAAGGAAAAATCTTCAGGTGAAGGCTTATTCACAAATATGTCTTCCACCTTAAAGAAAGCCCTCGGGGCCCGGCCCAAACAGTCCGCCCCGAGGGACAACTCACAAAAGCCCCCAAGACCACCAACTCCCGAGTTGGTTAAGAGGATACCCCCTCCCCCACCTAATGGTGAAGAAGAAGAGCCAGTCATTAGGTATGAGGTTAAGAGTGGGATCTCTGGCCTGCCCGAGCTCACAACAGTCCCCCAACCGGATGTGGCCAACACGGC... |
982,995 | [
"ATGAAGGCAATAATAGTAGTCTTGCTATATACATTTGCAACTGCAGATGCTGACACATTATGTATAGGCTATCATGCAAATAATTCAACTGACACTGTTGACACAGTACTAGAAAAGAATGTAACAGTAACACACTCTGTTAACCTTCTAGAGAACAAGCATGACGGGAAACTATGTAAACTAAGAGGGGTAGCCCCATTGCATTTGGGTAAATGTAACATTGCTGGATGGCTCTTGGGAAACCCAGAGTGTGAATCACTATTCACAGCAAGCTCATGGTCCTACATAGTGGAAACGCCTAATTCAGACAATGGG... |
1,166,639 | [
"GGTTATACCATAGACAACCGAACAAAGACAATGACCATCACTTTTCTCATCCTCCTGTTCACAGTAGTGAAAGGGGACCAAATATGTATCGGATACCATGCCAACAATTCCACAGAAAAAGTTGACACAATCTTGGAACGAAACGTCACCGTGACTCATGCCAAGGACATTCTTGAAAAAACGCATAATGGAAAGTTGTGCAGATTAAGCGGGATCCCTCCATTGGAACTGGGGGAATGCAGCATTGCAGGTTGGCTCCTTGGAAATCCGGAATGTGACCGGCTCTTAAGTGTACCTGAATGGTCCTATATAGTG... |
1,149,467 | [
"ATGGACAGAATAAAAGAACTAAGAGATCTGATGTCACAGTCTCGCACCCGCGAGATACTAACAAAAACCACTGTGGACCATATGGCCATAATCAAAAAATATACGTCAGGAAGACAGGAGAAGAATCCTGCTCTCAGAATGAAATGGATGATGGCGATGAAATACCCGATTACAGCTGACAAAAGAATAATGGAGATGATTCCCGAACGGAATGAACAAGGTCAAACTCTTTGGAGCAAAACAAATGATGCTGGATCAGACAGAGTAATGGTATCACCTCTGGCTGTAACGTGGTGGAACAGGAATGGACCAACA... |
1,980,830 | [
"TCAATTATATTCAGCATGGAAAGAATAAAAGAACTACGGAATCTAATGTCGCAGTCTCGCACTCGCGAGATACTGACAAAAACCACAGTGGACCATATGGCCATAATTAAGAAGTACACATCGGGGAGACAGGAAAAGAACCCGTCACTTAGGATGAAATGGATGATGGCAATGAAATATCCAATCACTGCTGACAAAAGGATAACAGAAATGGTTCCGGAGAGAAATGAACAAGGACAAACTCTATGGAGTAAAATGAGTGATGCTGGATCAGATAGAGTGATGGTATCACCTTTGGCTGTAACATGGTGGAAT... |
1,432,629 | [
"GGAAAATAAAAACAACCAAAATGAAAGTAAAACTACTGATCCTGTTTTGTACATTTACAGCTACATATGCGGACACAATATGTATAGGATACCATGCCAACAACTCAACCGACACTGTTGACACAGTACTTGAAAAGAATGTGACAGTGACACACTCTGTCAACCTACTTGAGGACAGTCACAATGGGAAGCTGTGCCTACTAAAGGGAATAGCCCCCCTACAATTGGGTAATTGCAGCGTTGCCGGATGGATATTAGGAAACCCAGAATGCGAATCACTGATTTCCAAGAAATCATGGTCCTACATTGTAGAAA... |
1,763,010 | [
"GCGAAAGCAGGTCAAATATATTCAATATGGAGAGAATAAAAGAACTAAGAGATTTGATGTCGCAGTCTCGCACTCGCGAGATACTGACAAAAACCACTGTGGACCATATGGCCATAATTAAGAAGTACACGTCAGGAAGACAGGAAAAGAATCCTGCCCTTAGGATGAAATGGATGATGGCAATGAAATATCCGATCACAGCAGACAAAAGAATAATGGAAATGATCCCTGAGAGAAATGAACAAGGCCAGACTCTCTGGAGCAAAACAAATGATGCTGGATCAGATAGAGTGATGGTGTCACCTCTGGCTGTGA... |
437,351 | [
"AGCAGGGGAAAATAAAAGCAACCGAAATGAAGGCAATACTATTAGTCTTGCTATGTACATTTACAGCCACAAATGCAGACACACTATGTATAGGTTATCATGCAAATAATTCAACTGAAACTGTTGATACAGTACTAGAAAAGAATGTAACAGTAACACACTCTGTTAACCTTCTTGAAGACAGACATAATGGGAAACTATGTAAACTAGGGGGGATAGCTCCATTGCATCTGGGTAAATGTAACATTGCCGGATGGCTTTTGGGAAACCCAGAATGTGAATTACTATTCACAGTAAGCTCATGGTCTTACATTG... |
1,634,194 | [
"ATGGAAAGAATAAAAGAACTAAGAGATTTGATGTCACAGTCTCGCACTCGCGAGATACTGACAAGAACAACTGTGGACCATATGGCCATAATCAAGAAATATACATCGGGAAGACAGGAGAAGAATCCTGCCCTTAGGATGAAGTGGATGATGGCGATGAAATATCCAATTACAGCAGACAAAAGGATAATGGAGATGATCCCGGAAAGAAATGAGCAAGGTCAGACCCTTTGGAGCAAGACAAATGATGCTGGATCAGACAGAGTGATGGTGTCACCCCTGGCTGTTACGTGGTGGAACAGAAATGGACCAACG... |
1,517,355 | [
"AGCRAAAGCAGGTAGATATTGAAAGATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCTCTCTATCGTTCCATCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTTGAAGATGTCTTTGCTGGGAAAAACACAGATCTTGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATTCTGTCACCTCTGACTAAGGGGATTTTAGGGTTTGTTTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTCAATGGGAATGGAGACCCAAATAACATGGACAAAGCAGT... |
104,393 | [
"GGGAACAACAGTGGGCAACCCTCTACAGTTGTTGATAACACACTTATGGTTGTTGTTGCTGTTTATTATTCCTGTTTGAAATCTGGCTGGATCTGTAGCGAACTTAAAGATAAGCTTATATTCTTCGCAAATGGGGATGATATAATACTAGCAGTTGAACCTCATAGTGTTAACATTCTTGACACATTCAAGGAATCTTTTTGGGAACTTGGATTGAGTTATGACTTCTCTGAGAGAACAAGGGAGCGAGAGCAGTTATGGTTTATGTCACATCAAGCAAAGCTTATAAATGATGTGTATATCCCCAAGTTAGAG... |
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ViroBench Dataset (58,314 viral sequences)
ViroBench is a curated viral genomics dataset and benchmark suite designed to stress-test nucleotide foundation models (NFMs) under realistic distribution shifts and to support responsible viral sequence modeling.
- Sequences: 58,314 viral nucleotide sequences
- Tasks: 18 total (12 classification + 6 generation)
- Project repo: https://github.com/QIANJINYDX/ViroBench
ViroBench-CLS-Lite Dataset (8,000 viral sequences)
ViroBench-CLS-Lite is a curated lightweight viral genomics subset designed to support rapid prototyping, hyperparameter screening, preliminary model comparison, and efficient evaluation of nucleotide foundation models on taxonomy and host classification tasks under realistic temporal and taxonomic distribution shifts.
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