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import logging def _get_port_v1(port_name, depth=0, selector=None, **kwargs): """ Perform a GET call to retrieve data for a Port table entry :param port_name: Alphanumeric name of the port :param kwargs: keyword s: requests.session object with loaded cookie jar keyword url: URL in mai...
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import random def sample_with_replacement(population,len,choose=random.choice): """Sample from a population with replacement Taken from Python Cookbook, 2nd ed, recipe 18.3 """ s = [] for i in xrange(len): s.append(choose(population)) return s
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def power_mod(val, power, m_value): """ Calculate power mod the efficent way """ if power <= 100: return (val ** power) % m_value if power % 2 == 0: return (power_mod(val, power // 2, m_value) ** 2) % m_value return (power_mod(val, power // 2, m_value) * power_mod(val, power ...
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def stokes_right_circular(): """Stokes vector for right circular polarized light.""" return np.array([1, 0, 0, 1])
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def hello_http(request): """HTTP Cloud Function. Args: request (flask.Request): The request object. <http://flask.pocoo.org/docs/0.12/api/#flask.Request> Returns: The response text, or any set of values that can be turned into a Response object using `make_response` <...
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def search_objects(params: dict, results: dict, meta: dict): """ Convert Elasticsearch results into the RPC results conforming to the "search_objects" method """ post_processing = _get_post_processing(params) objects = _get_object_data_from_search_results(results, post_processing) ret = { ...
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def encode_raw(objs): """ Encode a list of raw data and types to binary wire format Useful for analyzing Protobuf messages with unknown schema """ return RawWire().encode(objs)
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def inv_income_weighted_utility(coin_endowments, utilities): """Social welfare, as weighted average utility (weighted by inverse endowment). Args: coin_endowments (ndarray): The array of coin endowments for each of the agents in the simulated economy. utilities (ndarray): The array ...
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from datetime import datetime def new_post(): """ Display and handle form for creating a new blog post. """ form = PostForm() if form.validate_on_submit(): post = Post(pub_date=datetime.date.today()) post.title = form.title.data post.content = form.content.data post...
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from typing import List def _inv_shift_rows(s: List[List[bytes]]) -> List[List[bytes]]: """ Performs the inverted shift rows transformation as described in the standard :param s: the state matrix :return: the new state matrix with shifted rows """ s[0][1], s[1][1], s[2][1], s[3][1] = s[3][1], ...
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def create(dtype, key_len=None, val_len=None): """ Input : Example input dtype=i32:i32 will create an i32_i32 instance. """ k_ty, v_type = None, None try: splitted_words = dtype.split(':') except AttributeError as e: raise TypeError("dtype must be a string") if len(splitted_words) != 2: raise ValueErr...
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import io def read(*filenames, **kwargs): """ Read specified filenames and return contents """ enc = kwargs.get('enc', 'utf-8') sep = kwargs.get('sep', '\n') buf = [] for filename in filenames: with io.open(filename, encoding=enc) as f: buf.append(f.read()) return sep.join...
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def tile_context_feature(feat, max_sequence_size): """ Tile context features to max_sequence_size. Do nothing if sequence feature Parameters ---------- feat: Tensor Feature tensor to be tiled Shape: [batch_size, max_len] or [batch_size, sequence_size, max_len] max_sequence_size:...
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def conv_transpose(num_filters, kernel_size=3, activation='relu', conv_order='conv_first', use_batch_norm=True, name=None, **conv_kwargs): """A composite layer for deconvolution with BatchNormalization.""" assert conv_order in ['conv_first', 'conv_last'] def inner(x): conv_first...
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def get_id_character_mapping(data, columns): """Creating a mapping between characters and ids given dataframe. Args: data: dataframe that contains characters that need to be converted to ids column: a column of the dataframe that contains characters that need to be converted to ids columns: ...
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def estimate_dimension(X, n_neighbors='auto', neighbors_estimator=None): """Estimate intrinsic dimensionality. Based on "Manifold-Adaptive Dimension Estimation" Farahmand, Szepavari, Audibert ICML 2007. Parameters ---------- X : nd-array, shape (n_samples, n_features) Input data. ...
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def start(subj, body): """ parse Twitter message """ lines = body.splitlines() for index, line in enumerate(lines): if line in SUBJECTS: text = '\n'.join(lines[index + 1:]) return TITLE + line + '\n' + cut_text(text) if DELIMETER in body: return convert_p...
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import torch def img_collate(imgs): """ Args: imgs: Returns: torch.tensor, (B, 3, H, W) """ w = imgs[0].width h = imgs[0].height tensor = torch.zeros( (len(imgs), 3, h, w), dtype=torch.uint8).contiguous() for i, img in enumerate(imgs): nump_array = np.a...
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def __args_to_weka_options(args): """ Function that creates list with options (args) in format approperiate for weka. :param args: dictionery with command line input :return: list of command line arguments """ result = [] for k,v in args.items(): if v: result.append(...
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import json def execute( context: cli.CommandContext, verbose: bool = False, as_json: bool = False ) -> Response: """ :return: """ response = context.response settings = environ.package_settings if verbose: data = environ.systems.get_system_data() dat...
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import torch def generate_response(tokenizer, model, chat_round, chat_history_ids, question): """ Generate a response to some user input. """ # Encode user input and End-of-String (EOS) token new_input_ids = tokenizer.encode(">> You: "+ question + tokenizer.eos_token, return_tensors='pt') ...
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def gamma_closures(expressions, could_not_close=None): """ Try to compute gamma closure for each of expressions. :param expressions: list of moment expressions, where each expression is a product of powers of moments :param could_not_close: a list that will be filled with expressions that c...
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def find_by_history(view: kvstore.View, storage: bool, key: bytes, block_number: int) -> (bytes, bytes): """find_by_history""" if storage: bucket = tables.STORAGE_HISTORY_LABEL else: bucket = tables.ACCOUNTS_HISTORY_LABEL index_chunck_key = history_index.index_chunck_key(key, block_numb...
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def linear_coeff(x, y): """ This function returns the inclination coeffecient and y axis interception coeffecient m and b. ---------- Parameters ---------- x : Output of the split vector function. y : Output of the split vector function. ------- Returns ------- float numb...
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import struct def _package_contents_metadata(origin_label, grouping_label): """Named construct for helping to identify conflicting packaged contents""" return struct( origin = origin_label if origin_label else "<UNKNOWN>", group = grouping_label, )
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import math def str_to_feet(value="0'-0"): """ Returns string converted into decimal feet. Acceptible formats include: 1. 5'-7" 5'-7 1/2" 5'-7 1/2'' 5'-7 5'-7 1/2 2. 7 3/4 -8 The trailing quotation mark can b...
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from typing import Tuple from typing import List def deconstruct_answer( answer_sentence: T5_SENTENCE = '' ) -> Tuple[List[T5_SENTENCE], List[str]]: """Gets individual answer subsentences from the compound answer sentence. Args: answer sentence: a T5 output sentence. Examples: >>> se...
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def distance_modulus(distance): """Given a distance in parsecs, returns the value :math:`m - M`, a characteristic value used to convert from apparent magnitude :math:`m` to absolute magnitude, :math:`M`. Uses the formula from Carroll and Ostlie, where :math:`d` is in parsecs .. math:: m - M = 5 \log_{...
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def _serialize_data_asset(asset: DataAsset) -> JSON: """Serialize a DataAsset to JSON.""" return _serialize_asset(asset)
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def behroozi10_model_dictionary(redshift=sim_defaults.default_redshift, **kwargs): """ Dictionary that can be passed to the `~halotools.empirical_models.SubhaloModelFactory` to build a subhalo-based composite model using the stellar-to-halo-mass relation published in Behroozi et al. (2010), `arXiv:1...
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def detects(label=None, frac=None): """list of outlier detection algorithms to select from""" algo = {'isoForest': IsolationForest(contamination=frac, random_state=42), 'MCD': EllipticEnvelope(contamination=frac), 'LOF': LocalOutlierFactor(n_neighbors=20, contamination=frac)} return ...
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def zpadlist(values: list, inputtype: str, minval: int, maxval: int) -> list: """Return a list of zero padded strings and perform input checks. Returns a list of zero padded strings of day numbers from a list of input days. Invalid month numbers (e.g. outside of 1-31) will raise an exception. Para...
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def find_backend(txt): """ Determine the needed background based on a text string Parameters ---------- txt : str name to find in the list Returns ------- b : :class:`~beast.physicsmodel.helpers.gridbackends.GridBackend` subclass corresponding backend class """ ...
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def _set_health_check_defaults(health_check): """Sets default values for any missing attributes in HealthCheck. These defaults need to be kept up to date with the production values in health_check.cc Args: health_check: An instance of appinfo.HealthCheck or None. Returns: An instance of appinfo.Hea...
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import math def singular_values_plot(syslist, omega=None, plot=True, omega_limits=None, omega_num=None, *args, **kwargs): """Singular value plot for a system Plots a Singular Value plot for the system over a (optional) frequency range. Parameters ---...
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def find_spike_from_templates(recording, waveform_extractor, method='simple', method_kwargs={}, **job_kwargs): """Find spike from a recording from given templates. Parameters ---------- recording: RecordingExtractor The recording extractor object. waveform_extr...
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def model_outputs() -> str: """ Parses the model outputs in a human readable format. It also gets the boathouses by reach, so the user knows what boathouses are associated with each reach. Returns: Rendering of the model outputs via the `model_outputs.html` template. """ df = latest...
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import itertools import copy import logging def check_process(process, evaluator, quick, options): """Check the helas calls for a process by generating the process using all different permutations of the process legs (or, if quick, use a subset of permutations), and check that the matrix element is in...
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def getFileState(fileName, workDir, jobId, ftype="output"): """ Return the current state of a given file """ # create a temporary file state object FS = FileState(workDir=workDir, jobId=jobId, ftype=ftype) # update this file state = FS.getFileState(fileName) # cleanup del FS return s...
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def to_minimal_subject_jobject(subdomain, minimal_subject): """Converts the given MinimalSubject of Subject into an object that can be passed to to_json().""" subject_types = cache.SUBJECT_TYPES[subdomain] attributes = get_attributes_to_render(subject_types) attribute_jobjects, attribute_is = make_j...
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def left_ascending_super_operator(hamiltonian, isometry, unitary): """ binary mera left ascending super operator Args: hamiltonian (tf.Tensor): hamiltonian isometry (tf.Tensor): isometry of the binary mera unitary (tf.Tensor): disentanlger of the mera Returns: tf.Tensor...
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def TASK_JUMP_FWD(step=1): """Jumps to the next task - eng.jumpCallForward() example: A, B, TASK_JUMP_FWD(2), C, D, ... will produce: A, B, D @var step: int """ def _x(obj, eng): eng.jumpCallForward(step) _x.__name__ = 'TASK_JUMP_FWD' return _x
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from pathlib import Path import jinja2 from functools import reduce def __save__( script_name: str, benchbuild: BoundCommand, experiment: 'Experiment', projects: tp.Iterable[str] ) -> str: """ Dump a bash script that can be given to SLURM. Args: script_name (str): name of the bash script....
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def fib_iterative(n): """Calcualte n-th element of Fibonacci sequence. Assumes n >= 2 Returns: Fibonacci sequence up to element n, and n-th element of the seq. """ fibSeq = [0, 1] # base case for ii in range(2,n): # note: list(range(2,2)) is an empty list [] fibSeq.append(fibSeq[ii-2...
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from typing import Union from pathlib import Path from typing import Iterable from typing import Type from typing import Callable from typing import List from typing import Any def discover_functions( source: Union[Path, str, Module, Iterable[Module], type], signature: Type[Callable] = Callable, # ty...
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def bytescale(im): """ The input should be between [0,1] output is [0,255] in a unsigned byte array """ imout = (im*255).astype('u1') return imout
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import hashlib def gen_md5(src_byte): """ gen md5 :param src_byte: :return: """ m2 = hashlib.md5() m2.update(src_byte.encode("utf-8")) return m2.hexdigest()
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import json def workout_map_shot(context, request): """ Ask for the screenshot of a map, creating one if it does not exist. A json object is returned, containing the info for the needed screenshot """ if context.map_screenshot is None: save_map_screenshot(context, request) info = {'ur...
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def to_string(opt): """Encodes the option into a string""" entry = opt.entry if not tosave(entry): return False line = '' for key, val in entry.items(): if key in ['kid']: continue val = '{!r}'.format(val) val = val.replace(assign_sym, ...
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from typing import List from typing import Union from typing import Optional from typing import Match import re def search_in_comments( comments: List[Union[str, Comment]], filter_regex: str ) -> Optional[Match[str]]: """ Find match in pull request description or comments. Args: comments: Lis...
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def create_local_adapter_access(mmu_access, adapter_description, adapter): """ Creates a local adapter access. Parameters ------------ mmu_access : MMUAccess The mmu access the adapters are connected to adapter_descriptions : AdapterDescription The adapter description ad...
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def avro_artifacts(version = "1.8.2"): """ version: str = "1.8.2" - the version of avro to fetch """ return [ maven.artifact( group = group_id, artifact = artifact_id, version = version, ) for [group_id, artifact_id] in [AVRO, AVRO_TOOLS] ]
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import re def parse(docs): """Parse __docs__ text into markdown. Will parse directives like `:param name:` etc""" # strip leading tabs if not docs: return "" docs = strip_leading_tabs(docs) if ":param" in docs: out, title_set = [], False for line in docs.splitlines(): if ":param" in line: if not t...
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def mergersort(arr): """Sort function.""" def split(arr): if len(arr) <= 1: return lst mid = len(arr) // 2 left = arr[:middle] right = arr[middle:] left = split(left) right = split(right) return merge(left, right) def merge(left, right):...
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def default_interface(): """ Return just the default interface device dictionary. """ parser = get_parser() return parser.default_interface
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def ape(y, p): """Absolute Percentage Error (APE). Args: y (float): target p (float): prediction Returns: e (float): APE """ assert np.abs(y) > EPS return np.abs(1 - p / y)
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def new_record(score): """Verifie si le score peu entrer dans le top ten""" topten = load_json('topten.json') for index, player in enumerate(topten): if score > player["score"]: return index return None
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def _mean_of_cycle(data, setup_time=30, data_dict={}): """ Calculates mean of raw and reference signal during a zero cycle setup_time in seconds """ row_selection = (data.zerocycle_runtime >= setup_time) & (data.State_Zero == 1) cycle = data.loc[row_selection].agg( { "times...
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def proteinnet_tf_dataset(pn_map, batch_size, prefetch=0, shuffle_buffer=0, repeat=True): """ Initiate a TensorFlow Dataset from a ProteinNetMap. Create a TensorFlow Dataset from a ProteinNetMap, taking the output of the map and adding batching, shuffling and repeating in additio...
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import json import requests def post_gist(content, description="", filename="file", auth=False): """Post some text to a Gist, and return the URL.""" post_data = json.dumps( { "description": description, "public": True, "files": {filename: {"content": content}}, ...
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import functools def lru_cache(protected: bool = False, maxsize: int = 128, typed: bool = False): """ Wrapped version of the functools.lru_cache decorator which keeps track of all decorated functions to allow clearing all caches. :param protected: if set to True, the cache for this function will only...
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def mask2rle(mask): """ Efficient implementation of mask2rle, from @paulorzp img: numpy array, 1 - mask, 0 - background Returns run length as string formated Source: https://www.kaggle.com/xhlulu/efficient-mask2rle """ pixels = mask.T.flatten() pixels = np.pad(pixels, ((1, 1), )) ru...
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def CreateUniformBuffer(program, uniform_type, uniform_name, default_data=None): """ create uniform buffer from .mat(shader) file """ uniform_classes = [ UniformBool, UniformInt, UniformUint, UniformFloat, UniformVector2, UniformVector3, UniformVector4, UniformBoolVector2, UniformBoolVec...
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def root(): """Base view.""" over10 = Record.query.filter(Record.value >= 10).all() return str(over10)
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def tr_to_final_ph(stage, tr_to_ph, wind_final_perf, final_ph): """ Computes the number of trials required to reach the final phase. """ time = np.where(stage == final_ph)[0] # find those trials in phase 4 reached = False if len(time) != 0: first_tr = np.min(time) # min trial is first tria...
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def get_shannon_entropy(sequence): """Given a sequence, compute the Shannon Entropy, defined in https://ijssst.info/Vol-16/No-4/data/8258a127.pdf Args: sequence (np.array, [t, ]): sequence over which to compute. Returns: float: shannon entropy. """ # Remove zero entries in sequ...
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def interpolate_df(x, name, fp): """Interpolate a dataframe :param x: the x-coordinates at which to evaluate the interpolated values :type x: array :param name: the name of the column to use in the dataframe for the x-coordinate :type name: str :param fp: the dataframe containing the y-coordina...
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def geocoder_to_place(result): """Convert a result object from geocoder to a Place object""" return Place( name=result.address, country=result.country, country_code=result.country_code, state=result.state, description=result.description + " - " + result.class_description,...
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def query_session_job_status(session, status, user=None): """ :type session: Session :type user: User """ session = Session.objects.with_id(session) if not session: return None, HTTPStatus.NOT_FOUND if status not in ['success', 'started', 'dispatched', 'ready', 'failure', 'created']...
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def replace_string_newline(str_start: str, str_end: str, text: str) -> str: """ re.sub function stops at newline characters, but this function moves past these params: str_start, the start character of the string to be delted str_end, the end character of the string to be deleted te...
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def convert_cell(ase_cell): """ Convert a parallelepiped (forming right hand basis) to lower triangular matrix LAMMPS can accept. This function transposes cell matrix so the bases are column vectors """ cell = ase_cell.T if not is_upper_triangular(cell): tri_mat = np.zeros((3, 3)) ...
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def header_required(response, name, callback=do_nothing): """Checks that a specific header is in a headers dictionary. Args: response (object): An HTTP response object, expected to have a ``headers`` attribute that is a ``Mapping[str, str]``. name (str): The name of a required heade...
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def test_node_catchup_when_3_not_primary_node_restarted( looper, txnPoolNodeSet, tdir, tconf, allPluginsPath, steward1, stewardWallet): """ Test case: 1. Create pool of 4 nodes 2. Stop not primary node 3. Send some txns 4. Start stopped node 5. Ensure, that restarted node go...
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def get_model(point_cloud, is_training, num_class, bn_decay=None): """ Semantic segmentation PointNet, input is BxNx3, output Bxnum_class """ if isinstance(num_class, int): num_class = [num_class] batch_size = point_cloud.get_shape()[0].value num_point = point_cloud.get_shape()[1].value end_...
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def get_internal_weights(model): """Get all weights of a model without Wrapper specific weights. Args: model (keras.models.Model): wrapped model Returns: internal layer weights """ weights = [] for layer in model.layers: if isinstance(layer, PruningWrapper): weig...
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from datetime import datetime def get_visit_date(fecha_inicio): """ :param fecha_inicio: :return: date string YYYY-mm-dd """ if not fecha_inicio.strip(): return "" try: date_obj = datetime.strptime(fecha_inicio, "%m/%d/%y %H:%M %p") except ValueError: try: ...
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import re def text_normalize(text): """ Normalize Vietnamese accents """ text = re.sub(r"òa", "oà", text) text = re.sub(r"óa", "oá", text) text = re.sub(r"ỏa", "oả", text) text = re.sub(r"õa", "oã", text) text = re.sub(r"ọa", "oạ", text) text = re.sub(r"òe", "oè", text) text = ...
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from datetime import datetime def from_iso8601(s): """ convert iso8601 string to datetime object. refer to http://xml2rfc.ietf.org/public/rfc/html/rfc3339.html#anchor14 for details. :param str s: time in ISO-8601 :rtype: datetime.datetime """ m = _iso8601_fmt.match(s) if not m: ...
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def _ExtStorageEnvironment(unique_id, ext_params, size=None, grow=None, metadata=None, name=None, uuid=None, snap_name=None, snap_size=None, exclusive=None): """Calculate the environment for an External Storage...
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import types async def process_invoise_invalid(message: types.Message): """ If invoise is invalid """ return await message.reply("Номер заказа должен быть цифровой.\nВведите последние 5 цифр заказа:")
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def g(i, k, l): """ Stage cost. Please check page 384 and page 385 of [1]. :param i: state :param k: control :param l: switching :return: the cost """ n = 9 m = 4 X = inverse_map(i, n) U = inverse_map(k, m) A = [-28, -12, 12, 16, 0, 0, 0, 20, 16] B = [-8, 40, 20, 40]...
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import tqdm import scipy def fit_predict_update(clf, X_train, X_tests, y_train, y_tests, t_train, t_tests, fit_function=None, predict_function=None, rebalancers=(), rejectors=(), selectors=()): """Sliding window classification of a timestamp par...
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import time def is_expired(epoch_time): """True if current time has passed the provided epoch_time""" return time.time() > epoch_time
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import scipy def _assembleInit(xdata, ydata, bounds=None): """assemble the initial values based on the spectrum""" #INTITIALIZE VARIABLES init = scipy.zeros((3*len(semiEmperical)+1,)) output = scipy.zeros((len(init), 2)) ones = scipy.ones(semiEmperical.shape) #set baseline init[0] = ...
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def strtobool(val: str) -> bool: """Convert a string representation of truth to True or False. True values are 'y', 'yes', 't', 'true', 'on', and '1'; false values are 'n', 'no', 'f', 'false', 'off', and '0'. Raises ValueError if 'val' is anything else. """ if not isinstance(val, str): ...
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from statsmodels.stats.multitest import multipletests def programs2go(program2gene_dict,organism="hsapiens",fdr=0.1): """Get GO terms for programs. ...
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import hashlib import re import regex def api_string_search_choices(request, slug): """Return valid choices for a string search given other search criteria. This is a PRIVATE API. Return all valid choices for a given string search slug given the partial search value entered for that slug, its q-type...
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def get_screensaver_running_status(): """ Get the status of the running screensaver. """ screensaver = { 'name': 'screensaver_status' } is_screensaver_running = False try: is_screensaver_running = checkPidRunning(int(get_pid("xautolock"))) except: screensaver['full_text'...
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def position_extrapolate(dist_1_coords, dist_2_coords, delta_heading, delta_distance): """ update pdr predictions based on extrapolating last SfM position and direction :param dist_1_coords: sfm point immediately preceding or following (distance = 1) :param dist_2_coords: sfm point next to dist_1_coord...
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def detect_nose(cv_image): """Detects nose based on haar. Returns ponts""" return NOSE_HAAR.detectMultiScale(cvimage_grayscale(cv_image))
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import token def cvt_try_stmt(node: pytree.Base, ctx: Ctx) -> ast_cooked.Base: """ try_stmt: ('try' ':' suite ((except_clause ':' suite)+ ['else' ':' suite] ['finally' ':' suite] | 'finally' ':' suite)) """ #-# Try(stmt* body, excepthandler...
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from datetime import datetime def get_date_tag(date_format: str = DATE_FORMAT) -> str: """Returns a date string tag according to the DATE_FORMAT specifier, e.g. '2019-04-01'""" return datetime.now().strftime(date_format)
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def translate(image, dx, dy, **kwargs): """ Shift image horizontally and vertically >>> image = np.eye(3, dtype='uint8') * 255 >>> translate(image, 2, 1) array([[ 0, 0, 0], [ 0, 0, 255], [ 0, 0, 0]], dtype=uint8) :param numpy array image: Numpy array with ran...
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def stations_by_river(stations, river): """Takes a list of stations and returns a list of all the station names on a specific river in alphabetic order""" station_names = [] for station in stations: if station.river == river: station_names.append(station.name) station_names = sor...
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def read_career_info(carrera_id, test=False): """Consulta la información de una carrera según su código.""" query = 'SELECT * FROM carrera WHERE id = %s' return execute_sql(query, args=[carrera_id], rows=1, test=test)
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def get_atomic_species_card(name, **kwargs): """ Convert XML data to ATOMIC_SPECIES card :param name: Card name :param kwargs: Dictionary with converted data from XML file :return: List of strings """ try: atomic_species = kwargs['atomic_species'] species = atomic_species['s...
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from typing import Tuple import requests import json import logging def _get_document_pdf(data: dict, data_key: str, token: str, config: BaseConfig) -> Tuple[bytes, HTTPStatus]: """Retrieve the document pdf from the Reports API. Args: data: The data to send to the API. token: The token to acc...
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def is_url(arg): """输入是一个字符串,且值是一个合法的url""" if not isinstance(arg, str): return False try: result = urlparse(arg) return all([result.scheme, result.netloc]) except ValueError: return False
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def run_hybrid(wf, selector, workers): """ Returns the result of evaluating the workflow; runs through several supplied workers in as many threads. :param wf: Workflow to compute :type wf: :py:class:`Workflow` or :py:class:`PromisedObject` :param selector: A function selecting ...
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def getCompartment(rxn): """ This function is used to obtain the compartment information from reaction of yeastGEM :param rxn: example acetyl-CoA[m] + L-glutamate[m] -> coenzyme A[m] + H+[m] + N-acetyl-L-glutamate[m]' :return: """ cp1 = ['[c]','[ce]','[e]','[er]','[erm]','[g]','[gm]','[lp]','[...
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