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def ns_diff(newstr, oldstr): """ Calculate the diff. """ if newstr == STATUS_NA: return STATUS_NA # if new is valid but old is not we should return new if oldstr == STATUS_NA: oldstr = '0' new, old = int(newstr), int(oldstr) return '{:,}'.format(max(0, new - old))
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def get_crab(registry): """ Get the Crab Gateway :rtype: :class:`crabpy.gateway.crab.CrabGateway` # argument might be a config or a request """ # argument might be a config or a request regis = getattr(registry, 'registry', None) if regis is None: regis = registry return re...
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def create_meal(): """Create a new meal. --- tags: - meals parameters: - in: body name: body schema: id: Meal properties: name: type: string description: the name of the meal description: type...
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def buscaBinariaIterativa(alvo, array): """ Retorna o índice do array em que o elemento alvo está contido. Considerando a coleção recebida como parâmetro, identifica e retor- na o índice em que o elemento especificado está contido. Caso esse elemento não esteja presente na coleção, retorna -1. Utiliza ...
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def empiricalcdf(data, method='Hazen'): """Return the empirical cdf. Methods available: Hazen: (i-0.5)/N Weibull: i/(N+1) Chegodayev: (i-.3)/(N+.4) Cunnane: (i-.4)/(N+.2) Gringorten: (i-.44)/(N+.12) California: (i-1)/N Where i goes from ...
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def CCT_to_xy_Kang2002(CCT): """ Returns the *CIE XYZ* tristimulus values *CIE xy* chromaticity coordinates from given correlated colour temperature :math:`T_{cp}` using *Kang et al. (2002)* method. Parameters ---------- CCT : numeric or array_like Correlated colour temperature :mat...
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def tel_information(tel_number): """ check and return a dictionary that has element of validation and operator of number if number is not valid it return validation = 'False' and operator = 'None' """ validation = is_valid(tel_number) operator = tel_operator(tel_number) info_dict = {'valida...
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import pathlib from typing import Dict from typing import Any import yaml import json def load_file(file_name: pathlib.Path) -> Dict[str, Any]: """ Load JSON or YAML file content into a dict. This is not intended to be the default load mechanism. It should only be used if a OSCAL object type is unkno...
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from tests.test_plugins.documentations_plugin import DocumentPlugin def DocumentPlugin(): """ :return: document plugin class """ return DocumentPlugin
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import re def remove_extended(text): """ remove Chinese punctuation and Latin Supplement. https://en.wikipedia.org/wiki/Latin-1_Supplement_(Unicode_block) """ # latin supplement: \u00A0-\u00FF # notice: nbsp is removed here lsp_pattern = re.compile(r'[\x80-\xFF]') text = lsp_pattern.s...
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def appointment_letter(request, tid): """Display the appointment letter.""" paf = get_object_or_404(Operation, pk=tid) return render( request, 'transaction/appointment_letter.html', {'paf': paf}, )
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import random from typing import Iterable import itertools def balance_targets(sentences: Iterable[Sentence], method: str = "downsample_o_cat", shuffle=True) \ -> Iterable[Sentence]: """ Oversamples and/or undersamples training sentences by a number of targets. This is useful for linear shallow cl...
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def discriminator_loss(real_output, fake_output, batch_size): """ Computes the discriminator loss after training with HR & fake images. :param real_output: Discriminator output of the real dataset (HR images). :param fake_output: Discriminator output of the fake dataset (SR images). :param batch_siz...
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def NNx(time, IBI, ibimultiplier=1000, x=50): """ computes Heart Rate Variability metrics NNx and pNNx Args: time (pandas.DataFrame column or pandas series): time column IBI (pandas.DataFrame column or pandas series): column with inter beat intervals ibimultiplier...
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from datetime import datetime def datetimeobj_YmdHMS(value): """Convert timestamp string to a datetime object. Timestamps strings like '20130618120000' are able to be converted by this function. Args: value: A timestamp string in the format '%Y%m%d%H%M%S'. Returns: A datetime ob...
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def home(): """List devices.""" devices = Device.query.all() return render_template('devices/home.html', devices=devices)
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def translate_value(document_field, form_value): """ Given a document_field and a form_value this will translate the value to the correct result for mongo to use. """ value = form_value if isinstance(document_field, ReferenceField): value = document_field.document_type.objects.get(id=for...
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def error_404(error): """Custom 404 Error Page""" return render_template("error.html", error=error), 404
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def sum_num(n1, n2): """ Get sum of two numbers :param n1: :param n2: :return: """ return(n1 + n2)
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def intensity_slice_volume(kernel_code, image_variables, g_variables, blockdim, bound_box, vol_dim, voxel_size, poses, ...
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def mean_filter(img, kernel_size): """take mean value in the neighbourhood of center pixel. """ return cv2.blur(img, ksize=kernel_size)
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def main(): """Return the module instance.""" return AnsibleModule( argument_spec=dict( data=dict(default=None), path=dict(default=None, type=str), file=dict(default=None, type=str), ) )
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from typing import Optional from pathlib import Path def load_RegNetwork_interactions( root_dir: Optional[Path] = None, ) -> pd.DataFrame: """ Loads RegNetwork interaction datafile. Downloads the file first if not already present. """ file = _download_RegNetwork(root_dir) return pd.read_csv( ...
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def get_model_config(model, dataset): """Map model name to model network configuration.""" if 'cifar10' == dataset.name: return get_cifar10_model_config(model) if model == 'vgg11': mc = vgg_model.Vgg11Model() elif model == 'vgg16': mc = vgg_model.Vgg16Model() elif model == 'vgg19': mc = vgg_mo...
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from datetime import datetime def utc_now(): """Return current utc timestamp """ now = datetime.datetime.utcnow() return int(now.strftime("%s"))
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def rrc_filter(alpha, length, osFactor, plot=False): """ Generates the impulse response of a root raised cosine filter. Args: alpha (float): Filter roll-off factor. length (int): Number of symbols to use in the filter. osFactor (int): Oversampling factor (number of samples per symbol...
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def get_available_services(project_dir: str): """Get standard services bundled with stakkr.""" services_dir = file_utils.get_dir('static') + '/services/' conf_files = _get_services_from_dir(services_dir) services = dict() for conf_file in conf_files: services[conf_file[:-4]] = services_dir ...
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def build_insert(table, to_insert): """ Build an insert request. Parameters ---------- table : str Table where query will be directed. to_insert: iterable The list of columns where the values will be inserted. Returns ------- str Built query. """ sq...
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from pathlib import Path import json def get_reference_data(fname): """ Load JSON reference data. :param fname: Filename without extension. :type fname: str """ base_dir = Path(__file__).resolve().parent fpath = base_dir.joinpath('reference', 'data', fname + '.json') with fpath.open()...
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def _is_l10n_ch_isr_issuer(account_ref, currency_code): """ Returns True if the string account_ref is a valid a valid ISR issuer An ISR issuer is postal account number that starts by 01 (CHF) or 03 (EUR), """ if (account_ref or '').startswith(ISR_SUBSCRIPTION_CODE[currency_code]): return _is_l10...
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import struct def little_endian_uint32(i): """Return the 32 bit unsigned integer little-endian representation of i""" s = struct.pack('<I', i) return struct.unpack('=I', s)[0]
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def evaluate_scores(scores_ID, scores_OOD): """calculates classification performance (ROCAUC, FPR@TPR95) based on lists of scores Returns: ROCAUC, fpr95 """ labels_in = np.ones(scores_ID.shape) labels_out = np.zeros(scores_OOD.shape) y = np.concatenate([labels_in, labels_out]) s...
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from typing import Union def check_cardinality(attribute_name: str, analysis: run_metadata_pb2.Analysis ) -> Union[None, str]: """Check whether the cardinality exceeds the predefined threshold Args: attribute_name: (string), analysis: (run_metadata_pb2.Anal...
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def create_df_from(dataset): """ Selects a method, based on the given dataset name, and creates the corresponding dataframe. When adding a new method, take care to have as index the ASN and the column names to be of the format "dataset_name_"+"column_name" (e.g., the column "X" from the dataset "setA", shou...
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def plasma_fractal(mapsize=256, wibbledecay=3): """ Generate a heightmap using diamond-square algorithm. Return square 2d array, side length 'mapsize', of floats in range 0-255. 'mapsize' must be a power of two. """ assert (mapsize & (mapsize - 1) == 0) maparray = np.empty((mapsize, mapsize), dtype=np.flo...
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import pickle def read_ids(): """ Reads the content from a file as a tuple and returns the tuple :return: node_id, pool_id (or False if no file) """ if not const.MEMORY_FILE.exists(): return False with open(const.MEMORY_FILE, 'rb') as f: data = pickle.load(f) assert typ...
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from pymbolic.primitives import Call def _match_caller_callee_argument_dimension_(program, callee_function_name): """ Returns a copy of *program* with the instance of :class:`loopy.kernel.function_interface.CallableKernel` addressed by *callee_function_name* in the *program* aligned with the argument ...
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def new_automation_jobs(issues): """ :param issues: issues object pulled from Redmine API :return: returns a new subset of issues that are Status: NEW and match a term in AUTOMATOR_KEYWORDS) """ new_jobs = {} for issue in issues: # Only new issues if issue.status.name == 'New': ...
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def make_data(revs, word_idx_map, max_l=50, filter_h=3, val_test_splits=[2, 3], validation_num=500000): """ Transforms sentences into a 2-d matrix. """ version = begin_time() train, val, test = [], [], [] for rev in revs: sent = get_idx_from_sent_msg(rev["m"], word_idx_map, max_l, True) ...
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def init(param_test): """ Initialize class: param_test """ # initialization param_test.default_args_values = {'di': 6.85, 'da': 7.65, 'db': 7.02} default_args = ['-di 6.85 -da 7.65 -db 7.02'] # default parameters param_test.default_result = 6.612133606 # assign default params if no...
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def add_width_to_df(df): """Adds an extra column "width" to df which is the angular width of the CME in degrees. """ df = add_helcats_to_df(df, 'PA-N [deg]') df = add_helcats_to_df(df, 'PA-S [deg]') df = add_col_to_df(df, 'PA-N [deg]', 'PA-S [deg]', 'subtract', 'width', abs_col=True) return ...
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def checkSeconds(seconds, timestamp): """ Return a string depending on the value of seconds If the block is mined since one hour ago, return timestamp """ if 3600 > seconds > 60: minute = int(seconds / 60) if minute == 1: return '{} minute ago'.format(minute) retu...
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def get_netrange_end(asn_cidr): """ :param str asn_cidr: ASN CIDR :return: ipv4 address of last IP in netrange :rtype: str """ try: last_in_netrange = \ ip2long(str(ipcalc.Network(asn_cidr).host_first())) + \ ipcalc.Network(asn_cidr).size() - 2 except ValueEr...
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def load_from_file(filepath, column_offset=0, prefix='', safe_urls=False, delimiter='\s+'): """ Load target entities and their labels if exist from a file. :param filepath: Path to the target entities :param column_offset: offset to the entities column (optional). :param prefix: URI prefix (Ex: htt...
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def _get_repos_info(db: Session, user_id: int): """Returns data for all starred repositories for a user. The return is in a good format for the frontend. Args: db (Session): sqlAlchemy connection object user_id (int): User id Returns: list[Repository(dict)]:repo_info = { ...
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def ultimate_oscillator(close_data, low_data): """ Ultimate Oscillator. Formula: UO = 100 * ((4 * AVG7) + (2 * AVG14) + AVG28) / (4 + 2 + 1) """ a7 = 4 * average_7(close_data, low_data) a14 = 2 * average_14(close_data, low_data) a28 = average_28(close_data, low_data) uo = 100 * ((a7...
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def get_completions(): """ Returns the global completion list. """ return completionList
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def breadth_first_search(): """ BFS Algorithm """ initial_state = State(3, 3, "left", 0, 0) if initial_state.is_goal(): return initial_state frontier = list() explored = set() frontier.append(initial_state) while frontier: state = frontier.pop(0) if state.is_g...
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import pandas def rankSimilarity(df, top = True, rank = 3): """ Returns the most similar documents or least similar documents args: df (pandas.Dataframe): row, col = documents, value = boolean similarity top (boolean): True: most, False: least (default = True) rank (int): num...
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def change_controller(move_group, second_try=False): """ Changes between motor controllers move_group -> Name of required move group. """ global list_controllers_service global switch_controllers_service controller_map = { 'gripper': 'cartesian_motor_controller', 'whole_...
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import base64 def base64_encode(text): """<string> -- Encode <string> with base64.""" return base64.b64encode(text.encode()).decode()
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def _signed_bin(n): """Transform n into an optimized signed binary representation""" r = [] while n > 1: if n & 1: cp = _gbd(n + 1) cn = _gbd(n - 1) if cp > cn: # -1 leaves more zeroes -> subtract -1 (= +1) r.append(-1) n +=...
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def get_neighbor_v6_by_ids(obj_ids): """Return NeighborV6 list by ids. Args: obj_ids: List of Ids of NeighborV6's. """ ids = list() for obj_id in obj_ids: try: obj = get_neighbor_v6_by_id(obj_id).id ids.append(obj) except exceptions.NeighborV6DoesNot...
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import base64 def decode_b64_to_image(b64_str: str) -> [bool, np.ndarray]: """解码base64字符串为OpenCV图像, 适用于解码三通道彩色图像编码. :param b64_str: base64字符串 :return: ok, cv2_image """ if "," in b64_str: b64_str = b64_str.partition(",")[-1] else: b64_str = b64_str try: img = base6...
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def _get_index_videos(course, pagination_conf=None): """ Returns the information about each video upload required for the video list """ course_id = str(course.id) attrs = [ 'edx_video_id', 'client_video_id', 'created', 'duration', 'status', 'courses', 'transcripts', 'transcription_s...
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def get_user_by_api_key(api_key, active_only=False): """ Get a User object by api_key, whose attributes match those in the database. :param api_key: API key to query by :param active_only: Set this flag to True to only query for active users :return: User object for that user ID :raises UserDoe...
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def get_pixel_values_of_line(img, x0, y0, xf, yf): """ get the value of a line of pixels. the line defined by the user using the corresponding first and last pixel indices. Parameters ---------- img : np.array. image on a 2d np.array format. x0 : int raw number of the st...
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def _filter_out_variables_not_in_dataframe(X, variables): """Filter out variables that are not present in the dataframe. Function removes variables that the user defines in the argument `variables` but that are not present in the input dataframe. Useful when ussing several feature selection procedures...
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import gzip def file_format(input_files): """ Takes all input files and checks their first character to assess the file format. 3 lists are return 1 list containing all fasta files 1 containing all fastq files and 1 containing all invalid files """ fasta_files = [] fastq_files = [] inv...
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def sub_vector(v1: Vector3D, v2: Vector3D) -> Vector3D: """Substract vector V1 from vector V2 and return resulting Vector. Keyword arguments: v1 -- Vector 1 v2 -- Vector 2 """ return [v1[0] - v2[0], v1[1] - v2[1], v1[2] - v2[2]]
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def create_validity_dict(validity_period): """Convert a validity period string into a dict for issue_certificate(). Args: validity_period (str): How long the signed certificate should be valid for Returns: dict: A dict {"Value": number, "Type": "string" } representation of the ...
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def analyse_latency(cid): """ Parse the resolve_time and download_time info from cid_latency.txt :param cid: cid of the object :return: time to resolve the source of the content and time to download the content """ resolve_time = 0 download_time = 0 with open(f'{cid}_latency.txt', 'r') a...
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import re def process_ref(paper_id): """Attempt to extract arxiv id from a string""" # if user entered a whole url, extract only the arxiv id part paper_id = re.sub("https?://arxiv\.org/(abs|pdf|ps)/", "", paper_id) paper_id = re.sub("\.pdf$", "", paper_id) # strip version paper_id = re.sub(...
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import re def augment_test_func(test_func): """Augment test function to parse log files. `tools.create_tests` creates functions that run an LBANN experiment. This function creates augmented functions that parse the log files after LBANN finishes running, e.g. to check metrics or runtimes. No...
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def nstep_td(env, pi, alpha=1, gamma=1, n=1, N_episodes=1000, ep_max_length=1000): """Evaluates state-value function with n-step TD Based on Sutton/Barto, Reinforcement Learning, 2nd ed. p. 144 Args: env: Environment pi: Policy alpha: Step size gamma: Discount facto...
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def open_file(path): """more robust open function""" return open(path, encoding='utf-8')
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def test_subscribe(env): """Check async. interrupt if a process terminates.""" def child(env): yield env.timeout(3) return 'ohai' def parent(env): child_proc = env.process(child(env)) subscribe_at(child_proc) try: yield env.event() except Interru...
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import gzip def _parse_data(f, dtype, shape): """Parses the data.""" dtype_big = np.dtype(dtype).newbyteorder(">") count = np.prod(np.array(shape)) # See: https://github.com/numpy/numpy/issues/13470 use_buffer = type(f) == gzip.GzipFile if use_buffer: data = np.frombuffer(f.read(), dty...
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def test_target(target # type: Any ): """ A simple decorator to declare that a case function is associated with a particular target. >>> @test_target(int) >>> def case_to_test_int(): >>> ... This is actually an alias for `@case_tags(target)`, that some users may find a bit...
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def plot_spatial(adata, color, img_key="hires", show_img=True, **kwargs): """Plot spatial abundance of cell types (regulatory programmes) with colour gradient and interpolation (from Visium anndata). This method supports only 7 cell types with these colours (in order, which can be changed using reorder_cma...
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def stats_by_group(df): """Calculate statistics from a groupby'ed dataframe with TPs,FPs and FNs.""" EPSILON = 1e-10 result = df[['tp', 'fp', 'fn']].sum().reset_index().assign( precision=lambda x: (x['tp'] + EPSILON) / (x['tp'] + x['fp'] + EPSILON), recall=lambda x: (x['tp'] + EPSIL...
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def in_this_prow(prow): """ Returns a bool describing whether this processor inhabits `prow`. Args: prow: The prow. Returns: The bool. """ return prow == my_prow()
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def _keypair_from_file(key_pair_file: str) -> Keypair: """Returns a Solana KeyPair from a file""" with open(key_pair_file) as kpf: keypair = kpf.read() keypair = keypair.replace("[", "").replace("]", "") keypair = list(keypair.split(",")) keypair = [int(i) for i in keypair] r...
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import binascii def val_to_bitarray(val, doing): """Convert a value into a bitarray""" if val is sb.NotSpecified: val = b"" if type(val) is bitarray: return val if type(val) is str: val = binascii.unhexlify(val.encode()) if type(val) is not bytes: raise BadConver...
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def unpack_uint64_from(buf, offset=0): """Unpack a 64-bit unsigned integer from *buf* at *offset*.""" return _uint64struct.unpack_from(buf, offset)[0]
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def del_none(dictionary): """ Recursively delete from the dictionary all entries which values are None. Args: dictionary (dict): input dictionary Returns: dict: output dictionary Note: This function changes the input parameter in place. """ for key, value in list(dic...
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def get_table_header(driver): """Return Table columns in list form """ header = driver.find_elements(By.TAG_NAME, value= 'th') header_list = [item.text for index, item in enumerate(header) if index < 10] return header_list
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from rx.core.operators.connectable.refcount import _ref_count from typing import Callable def ref_count() -> Callable[[ConnectableObservable], Observable]: """Returns an observable sequence that stays connected to the source as long as there is at least one subscription to the observable sequence. """...
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def radius_provider_modify(handle, name, **kwargs): """ modifies a radius provider Args: handle (UcsHandle) name (string): radius provider name **kwargs: key-value pair of managed object(MO) property and value, Use 'print(ucscoreutils.get_meta_info(<classid>).confi...
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def _read_table(table_node): """Return a TableData object for the 'table' element.""" header = [] rows = [] for node in table_node: if node.tag == "th": if header: raise ValueError("cannot handle multiple headers") elif rows: raise ValueErr...
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def postorder(root: Node): """ Post-order traversal visits left subtree, right subtree, root node. >>> postorder(make_tree()) [4, 5, 2, 3, 1] """ return postorder(root.left) + postorder(root.right) + [root.data] if root else []
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def merge_triangulations(groups): """ Each entry of the groups list is a list of two (or one) triangulations. This function takes each pair of triangulations and combines them. Parameters ---------- groups : list List of pairs of triangulations Returns ------- list ...
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def compute_relative_pose(cam_pose, ref_pose): """Compute relative pose between two cameras Args: cam_pose (np.ndarray): Extrinsic matrix of camera of interest C_i (3,4). Transforms points in world frame to camera frame, i.e. x_i = C_i @ x_w (taking into account homogeneous dime...
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def determine_clim_by_standard_deviation(color_data, n_std_dev=2.5): """Automatically determine color limits based on number of standard deviations from the mean of the color data (color_data). Useful if there are outliers in the data causing difficulties in distinguishing most of the data. Outputs vmin...
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def ec_double(point: ECPoint, alpha: int, p: int) -> ECPoint: """ Doubles a point on an elliptic curve with the equation y^2 = x^3 + alpha*x + beta mod p. Assumes the point is given in affine form (x, y) and has y != 0. """ assert point[1] % p != 0 m = div_mod(3 * point[0] * point[0] + alpha, 2 ...
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def scaled_dot_product_attention(q, k, v, mask): """ Calculate the attention weights. q, k, v must have matching leading dimensions. k, v must have matching penultimate dimension, i.e.: seq_len_k = seq_len_v. The mask has different shapes depending on its type(padding or look ahead) but it must ...
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import re def _parse_message(message): """Parses the message. Splits the message into separators and tags. Tags are named tuples representing the string ^^type:name:format^^ and they are separated by separators. For example, in "123^^node:Foo:${file}^^456^^node:Bar:${line}^^789", there are two tags and t...
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def model_fn(features, labels, mode, params): """Model function.""" del labels, params encoder_module = hub.Module(FLAGS.retriever_module_path) block_emb = encoder_module( inputs=dict( input_ids=features["block_ids"], input_mask=features["block_mask"], segment_ids=features["b...
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def get_rotated_coords(vec, coords): """ Given the unit vector (in cartesian), 'vec', generates the rotation matrix and rotates the given 'coords' to align the z-axis along the unit vector, 'vec' Args: vec, coords - unit vector to rotate to, coordinates Returns: rot_coords: ro...
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def merge_on_pids(all_pids, pdict, ddict): """ Helper function to merge dictionaries all_pids: list of all patient ids pdict, ddict: data dictionaries indexed by feature name 1) pdict[fname]: patient ids 2) ddict[fname]: data tensor corresponding to each patient """ set_ids = s...
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import requests import numpy def do_inference(hostport, work_dir, concurrency, num_tests): """Tests PredictionService over Tensor-Bridge. Args: hostport: Host:port address of the PredictionService. work_dir: The full path of working directory for test data set. concurrency: Maximum number of concurre...
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def test_true() -> None: """This is a test that should always pass. This is just a default test to make sure tests runs. Parameters ---------- None Returns ------- None """ # Always true test. assert_message = "This test should always pass." assert True, assert_message ...
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def parseStylesheetFile(filename): """Load and parse an XSLT stylesheet""" ret = libxsltmod.xsltParseStylesheetFile(filename) if ret == None: return None return stylesheet(_obj=ret)
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import torch def tensor_to_index(tensor: torch.tensor, dim=1) -> np.ndarray: """Converts a tensor to an array of category index""" return tensor_to_longs(torch.argmax(tensor, dim=dim))
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def _le_(x: symbol, y: symbol) -> symbol: """ >>> isinstance(le_(symbol(3), symbol(2)), symbol) True >>> le_.instance(3, 2) False """ return x <= y
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from typing import List def convert_country_codes(source_codes: List[str], source_format: str, target_format: str, throw_error: bool = False) -> List[str]: """ Convert country codes, e.g., from ISO_2 to full name. Parameters ---------- source_codes: List[str] Lis...
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def get_simple_lca_length(std_tree, test_gold_dict, node1, node2): """ get the corresponding node of node1 and node2 on std tree. calculate the lca distance between them Exception: Exception("[Error: ] std has not been lca initialized yet") std tree need to be initialized before running ...
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def edit_catagory(catagory_id): """edit catagory""" name = request.form.get('name') guest_id = session['guest_id'] exists = db.session.query(Catalogs).filter_by(name=name, guest_id=guest_id).scalar() if exists: return abort(404) if name...
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def match_patterns(name, name_w_pattern, patterns): """March patterns to filename. Given a SPICE kernel name, a SPICE Kernel name with patterns, and the possible patterns, provide a dictionary with the patterns as keys and the patterns values as value after matching it between the SPICE Kernel name...
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def _generate_good_delivery_token_email(request, good_delivery, msg=''): """ Send an email to user with good_delivery activation URL and return the token :type request: HttpRequest :type good_delivery: GoodDelivery :type msg: String :param structure_slug: current HttpRequest :param str...
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