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def light_probe_sampling_variance_minimization_Viriyothai2009( light_probe, lights_count=16, colourspace=RGB_COLOURSPACES['sRGB']): """ Sample given light probe to find lights using *Viriyothai (2009)* variance minimization light probe sampling algorithm. Parameters ---------- light_pro...
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def view_diff(request, uid): """ View most recent diff to a post. """ # View most recent diff made to a post post = Post.objects.filter(uid=uid).first() diffs = Diff.objects.filter(post=post).order_by('-pk') # Post has no recorded changes, if not diffs.exists(): return ajax_su...
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def str2bool(val): """Convert string to boolean value """ try: if val.lower() in ['false', 'off', '0']: return False else: return True except AttributeError: raise TypeError('value {0} was not a string'.format(type(val)))
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import torch def make_gaussian_filter_tensor(single_filter, angles, device='cuda'): """ Generates 3D tensor of size (M, M, number_angles) with stack of rotated Fourier filters to be used for datacube extraction. :param single_filter: Initial filter as numpy array of size (M, M) :param angles: list...
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def remove_outliers(df): """Summary Line. Extended description of function. Args: arg1: Function will remove 1.5 IQR outliers from data set. Returns: Will return a data set with outliers within the 1.5 IQR range removed. """ q1 = df.quantile(0.25) q3 = df.quantile(0.75) iq...
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def loadfactory(theclass, *args): """Returns an extended instance of `theclass` initiated from dlite instance or storage. If `*args` is a dlite instance, the returned object is initiated form it. Otherwise `*args` is passed to dlite.Instance() """ inst = args[0] if isinstance(args[0], Instance...
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def find_diagonal_blocks(mat: np.ndarray) -> np.ndarray: """ Find perfect diagonal sub-blocks in a block-diagonalized binary matrix. Parameters ---------- mat : (n,n) np.ndarray binary matrix Returns ------- inds : (n,) np.ndarray[int] all elements comprising a unique p...
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def categorical_evaluation(prediction: np.ndarray, target: np.ndarray, metric_name: str, mask=None) -> pd.DataFrame: """ Evaluates a regression prediction with the F1 score on quantile-based categories Args: prediction: shape [n_classes, X] target: shape [n_classes, ...
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def get_layers(net_param): """Get layers information. Parameters ---------- net_param : caffe_pb2.NetParameter A pretrined network description. Returns ------- layers : list description of the layers. version : string version information of the pretrained model. ...
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from pathlib import Path def get_project_root() -> Path: """ Get project root directory with assumed structure as: ${PACKAGE_ROOT}/core/common/path.py """ return Path(__file__).resolve().parent.parent.parent
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def cvSubdiv2DEdgeOrg(edge): """CvSubdiv2DPoint cvSubdiv2DEdgeOrg( CvSubdiv2DEdge edge ) Returns edge origin [ctypes-opencv] returns None if no point is found """ ev = edge.value e = pointer(CvQuadEdge2D.from_address(ev & ~3)) return pointee(e[0].pt[ev & 3])
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async def kill_process(op: Operation, host: ObservedHost, pid: int, job_run_until_success) -> bool: """ Kills the specified process pid on the desired host Args: op: The operation currently being run host: The host to run the command on pid: The pid to kill job_run_until_succ...
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def delete(consul_url=None, token=None, key=None, **kwargs): """ Delete values from Consul :param consul_url: The Consul server URL. :param key: The key to use as the starting point for the list. :param recurse: Delete values recursively beginning at the value of key. :param cas: This flag is u...
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def indexCube(nodes, gridSize, n=None): """ Returns the index of nodes on the mesh. Input: nodes - string of which nodes to return. e.g. 'ABCD' gridSize - size of the nodal grid n - number of nodes each i,j,k direction: [ni,nj,nk] Output: index - index in th...
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def encode_cf_datetime(dates, units=None, calendar=None): """Given an array of datetime objects, returns the tuple `(num, units, calendar)` suitable for a CF compliant time variable. Unlike `date2num`, this function can handle datetime64 arrays. See also -------- netcdftime.date2num """ ...
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def aggclus(X, THRESHOLD): """ agglomerative clustering using single link X is the n x m vector where n is the number of samples uses euclidian distance """ clustering = AgglomerativeClustering(n_clusters=None, distance_threshold=THRESHOLD).fit(X) return clustering.labels_,clustering.n_clust...
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def calc_pval(x, y, nulls): """ Calculates p-values for simulations in `x` and `y` using `spatnull` Parameters ---------- {x, y} : (N,) array_like Simulated GRF brain maps nulls : (N, P) array_like Null versions of `y` GRF brain map Returns ------- pval : float ...
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def norm_bbox(img, bbox, x_corr=0.025, y_corr=0.025): """Add adition value for bbox results in x and y-axis In order to ensure the detected region can cover all the table, we will add an addition value for both x and y axis of the bbox Using the correlation value x_corr for x-axis and y_corr for y-axis ...
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def get_latest_draft_version(version): """Get latest draft version of version object """ drafts = Version.objects.filter_by_content_grouping_values(version.content).filter( state=DRAFT ) return drafts.first()
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from typing import Optional def delete_datasource_mapping(connection: Connection, id: str, error_msg: Optional[str] = None): """Delete a datasource mapping based on id. Args: connection: MicroStrategy REST API connection object id (string): ID of the mapping meant to be deleted. error...
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from typing import Union from typing import Mapping from typing import Any from typing import Sequence def _build_entity_object_ids(entities: Union[str, Mapping[str, Any], Sequence[str]]) -> str: """ Builds the string of object ids as required by the GetObject transaction request. See section 5.3 for the ...
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def get_all_coords(rdmol): """Function to get all the coordinates for an RDMol Returns three lists""" conf = rdmol.GetConformer() x_coords = [] y_coords = [] z_coords = [] for atm in rdmol.GetAtoms(): x_coords.append(conf.GetAtomPosition(atm.GetIdx()).x) y_coords.append(conf....
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from typing import BinaryIO from typing import Any def make_sized_bytes(size): """ Create a streamable type that subclasses "hexbytes" but requires instances to be a certain, fixed size. """ name = "bytes%d" % size def __new__(self, v): v = bytes(v) if not isinstance(v, bytes)...
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def evaluations(ty, pv): """ evaluations(ty, pv) -> ACC Calculate accuracy using the true values (ty) and predicted values (pv). """ if len(ty) != len(pv): raise ValueError("len(ty) must equal to len(pv)") total_correct = total_error = 0 for v, y in zip(pv, ty): if y == v: ...
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def _is_member_of(cls, obj): """ returns True if obj is a member of cls This has to be done without using getattr as it is used to check ownership of un-bound methods and nodes. """ if obj in cls.__dict__.values(): return True # check the base classes if cls.__bases__: f...
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from typing import Union from typing import List def get_base_info(stock_codes: Union[str, List[str]]) -> Union[pd.Series, pd.DataFrame]: """ Parameters ---------- stock_codes : Union[str, List[str]] 股票代码或股票代码构成的列表 Returns ------- Union[Series, DataFrame] - ``Series`` : 包...
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def photom(data,stars,uncertainty=None,rad=[3],skyrad=None,display=None, gain=1,rn=0,mag=True,utils=True) : """ Aperture photometry of input image with current star list """ # input radius(ii) in a list if type(rad) is int or type(rad) is float: rad = [rad] # uncertainty either speci...
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def discount_cumsum(x, dones, gamma): """ computing discounted cumulative sums of vectors that resets with dones input: vector x, vector dones, [x0, [0, x1, 0, x2 1, x3 0, x4] 0] output: [x0 + discount * x1...
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from typing import Iterable import itertools def determine_resolves_to_generate( all_known_user_resolve_names: Iterable[KnownUserResolveNames], all_tool_sentinels: Iterable[type[GenerateToolLockfileSentinel]], requested_resolve_names: set[str], ) -> tuple[list[RequestedUserResolveNames], list[type[Generat...
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import torch def prepare_laplacian(laplacian): """Prepare a graph Laplacian to be fed to a graph convolutional layer """ def estimate_lmax(laplacian, tol=5e-3): r"""Estimate the largest eigenvalue of an operator.""" lmax = sparse.linalg.eigsh(laplacian, k=1, tol=tol, ...
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import hmac def hash_str(s): """Hash the user_id and SECRET (a constant) to create a cookie hash.""" return hmac.new(SECRET, s).hexdigest()
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from typing import Optional from typing import Any from typing import Tuple def transition_kernel_wrapper( current_state: 'fun_mc_lib.FloatNest', kernel_results: 'Optional[Any]', kernel: 'tfp.mcmc.TransitionKernel') -> 'Tuple[fun_mc_lib.FloatNest, Any]': """Wraps a `tfp.mcmc.TransitionKernel` as a `Transiti...
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def get_valid_output_response(data): """ Returns success message correct processing of post/get request :param str data: message :return: response :rtype: object """ response = {"status": 200, "message": "Success", "data": data} return response
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def _get_column_data_type(dataframe: pd.DataFrame): """ Returns ------- when krx.read_date(date='2021-06-22') {'종목명': 'str', '시장구분': 'str', '소속부': 'str', '종가': 'np.int64', '대비': 'np.int64', '등락률': 'float', '시가': 'np.int64', '고가'...
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from typing import Dict from typing import Any async def create_pr( maintainer_can_modify: bool = True, draft: bool = False, *, owner: str, repo: str, head: str, base: str, title: str, body: str, app: Application, logger: BoundLogger, ) -> Dict[str, Any]: """Create a Gi...
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def build_metadata_table(city_names): """Return the name of a temp file with metadata from the given city.""" metadata = get_complete_metadata(uploadable=True) city_metadata_rows = metadata[COLUMNS.CITY].str.lower().isin(city_names) city_metadata = metadata[city_metadata_rows] city_metadata_file_han...
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from datetime import datetime def format_log_entry(msg): """Add timestamp and align msg for logging purposes""" timestamp = str(datetime.datetime.now()) # Align colon (msg must begin with 'CTRL', 'SEM' or '3VIEW'): try: i = msg.index(':') except: i = 0 return (timestamp[:22] + ...
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from ldap3.extend import StandardExtendedOperations from anima.utils import authenticate def test_authenticate_with_stalker_and_ldap_authenticates_an_existing_ldap_user(ldap_server, create_db, monkeypatch): """testing if the anima.utils.authenticate() function will authenticate a ldap user without a problem ...
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def multi_quat_diff(nq1, nq0): """return the relative quaternions q1-q0 of N joints""" nq_diff = np.zeros_like(nq0) for i in range(nq1.shape[0] // 4): ind = slice(4*i, 4*i + 4) q1 = nq1[ind] q0 = nq0[ind] nq_diff[ind] = quaternion_multiply(q1, quaternion_inverse(q0)) ret...
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def index(path): """UI base view.""" return render_template('invenio_app_ils/index.html')
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def wrap_exceptions(callable): """Call callable into a try/except clause so that if an OSError EPERM exception is raised we translate it into psutil.AccessDenied. """ def wrapper(self, *args, **kwargs): try: return callable(self, *args, **kwargs) except OSError, err: ...
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def multi_multi_log_loss(predicted, actual, class_column_indices=BOX_PLOTS_COLUMN_INDICES, eps=1e-15): """ Multi class version of Logarithmic Loss metric as implemented on DrivenData.org """ class_scores = np.ones(len(clas...
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def filter_production_brand(production_id): """ 产品品牌 :param production_id: :return: """ production_info = get_production_row_by_id(production_id) return production_info.production_brand if production_info else '-'
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def print_sami(s, idfile, queryText, outFile=True, verbose=True): # ~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~ """ Define a Row Iterator for screen output """ # Prepare some variables. counter = 0 idlist = [] # Iterate over all supplied rows. if outFile: ...
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def extract_tables(sql): """ 获取sql语句中的库、表名 :param sql: :return: """ tables = list() for i in extract_tables_by_sql_parse(sql): tables.append({ "schema": i.schema, "name": i.name, }) return tables
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import traceback def session_wrapper(send_message=True, private=False): """Create a session, handle permissions, handle exceptions and prepare some entities.""" def real_decorator(func): """Parametrized decorator closure.""" @wraps(func) def wrapper(update, context): sessio...
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import requests def fetch_j_league_schedule(year: int = 1992) -> pd.DataFrame: """Load J League schedule dataset.""" url = "https://data.j-league.or.jp/SFMS01/search" params = {"competition_years": year, "lang": "en"} response = requests.get(url, params=params) attrs = {"class": "table-base00 sea...
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def cancel_job(request, job_id): """ Cancels the current job. :param request: Django request object. :param job_id: id of the job. :return: Redirects to relevant view. """ should_redirect = False # to decide which page to forward if not coming from any http referrer. # this happens...
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from typing import Optional from typing import Dict from typing import List def scripts(page_content: Optional[Dict]) -> List[str]: """ .. _`example reference server`: https://github.com/stellar/django-polaris/tree/master/example Replace this function with another by passing it to ``register_integrat...
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def simplesubspec(signal, wlen, inc, NIS, a, b): """ simple spectral subtraction denoise :param signal: noisy speech signal :param wlen: frame length :param inc: frame shift :param NIS: leading unvoiced segment frame number :param a: over subtraction factor :param b: gain compensation factor :return output: de...
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def get_possible_topologies(no_ami_fgs, no_alde_fgs): """ Determine possible topologies based on the FGs in BBs. """ if no_ami_fgs == 2 and no_alde_fgs == 3: pos_topo = ['2p3', '4p6', '4p62', '6p9'] elif no_ami_fgs == 3 and no_alde_fgs == 3: pos_topo = ['1p1', '4p4'] return po...
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import requests def hits(batter_id=None): """Get the number of hits for each historical batter. If batterId is specified, only that batter is returned. `batter_id` is a single string UUID or list of string UUIDs. Returns dictionary {batter_id: count}""" params = {} if batter_id: params['b...
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def valid_axes( draw, ndim, pos_only=False, single_axis_only=False, permit_none=True, min_dim=0, max_dim=None, ): """ Hypothesis search strategy: Given array dimensionality, generate valid `axis` arguments (including `None`) for numpy's sequential functions. Examples from this s...
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def index_intellectuels() : """ Route permettant l'affichage de l'index des intellectuels enregistrés :return : affichage du template index_intellectuels.html """ titre="index_intellectuels" #On vérifie que la base de données n'est pas vide intellectuells = Intellectuel.query.all() if len(intellectuells) ==...
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import time def random_split_by_user(dataset, user_id='user_id', item_id='item_id', max_num_users=1000, item_test_proportion=.2, random_seed=0): """Create a recommender-friendly train-test ...
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from typing import Union from typing import List from typing import Any import yaml def read_yaml(content: Text, reader_type: Union[Text, List[Text]] = "safe") -> Any: """Parses yaml from a text. Args: content: A text containing yaml content. reader_type: Reader type to use. By default "safe"...
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def _GetSheriffForTest(test): """Gets the Sheriff for a test, or None if no sheriff.""" if test.sheriff: return test.sheriff.get() return None
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def smooth_surround_LS_v1(p, is_obs, sd_dv): """ Smooth via LS on each vic in a loop. :param p: n, n_vic :param is_obs: n, n_vic :param sd_dv: :return: x: n, n_vic, 2 """ n, n_vic = p.shape x0 = np.zeros((n_vic, 2)) P0 = np.zeros((n_vic, 2, 2)) P0[:] = np.eye(2) * 1e8...
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def booth(args): """ Booth function Global minimum: f(1.0,3.0) = 0.0 Search domain: -10.0 <= x, y <= 10.0 """ return (args[0] + 2*args[1] - 7)**2 + (2*args[0] + args[1] - 5)**2
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import fnmatch def is_cms_app(app_name): """ Return whether the given application is a CMS app """ for pat in appsettings.FLUENT_DASHBOARD_CMS_APP_NAMES: if fnmatch(app_name, pat): return True return False
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def deeplabv3_resnet101(pretrained=False, progress=True, num_classes=21, aux_loss=None, **kwargs): """Constructs a DeepLabV3 model with a ResNet-101 backbone. Args: pretrained (bool): If True, returns a model pre-trained on COCO train2017 which contains the same clas...
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def query_model(master_df, query_sid): """ NOTE: Fields containing enzyme, compound PubChem sid, and SMILES string must be named ['entry', 'PubChem', 'SMILES'] respectively """ # get query SMILES string & pair query compound with each unique enzyme in the master DataFrame updated_df = pair_q...
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def makeset(weatherpart): """ with open("WeatherWear/clothes.csv") as f: reader = csv.reader(f) next(reader) data = [] for row in reader: data.append( [float(cell) for cell in row[:13]] ) clothes = data """ clothes = [[0.0...
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import requests from bs4 import BeautifulSoup def create_soup(url): """ Create soup object from url """ try: page = requests.get(url) soup = BeautifulSoup(page.content, 'html.parser') return soup except Exception as e: print("[ERROR] Error occurred in requesting htm...
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def get_vtk_edges(vtkdata): """ Get mesh edges. Parameters ---------- vtkdata : VTK object Mesh, scalar, vector and tensor data. Returns ------- edges : VTK object Mesh, scalar, vector and tensor data. """ edges = vtk.vtkExtractEdges() if vtk_version < 6: ...
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def DispatchKeyForTagSpecOrNone(tag_spec): """For a provided tag_spec, generates its dispatch key. If the value (or value_casei) is used, uses the first value from the protoascii. Args: tag_spec: an instance of type validator_pb2.TagSpec. Returns: a string indicating the dispatch key, or None. ""...
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def convert_column_to_input(column: Column) -> InputField: """Converts a sqlalchemy column into a graphql field or input field""" sqla_type = type(column.type) gql_type = convert_input_type(sqla_type) return InputField(gql_type)
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import math def rainbow_search(x, y, step): """Returns RGB color tuple """ xs = math.sin((step) / 100.0) * 20.0 ys = math.cos((step) / 100.0) * 20.0 scale = ((math.sin(step / 60.0) + 1.0) / 5.0) + 0.2 r = math.sin((x + xs) * scale) + math.cos((y + xs) * scale) g = math.sin((x + xs) * s...
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def check_codes(df, col, schema_codes): """ Get values not in list of codes. Parameters ---------- df : pd.DataFrame col : str pd.DataFrame column name schema_codes : array_like List of allowed values Returns ------- array_like Invalid values >>> in...
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from typing import Optional def orbit_number_validator(orbit_number: str) -> Optional[str]: """Validates the parameter to check whether it is a valid orbit number (1 To 999999) Args: orbit_number::str Value that could be orbit number either single value or a range Returns: ...
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def get_result(data: bytes): """start the thrift client and transform data to server through the client""" with TransportClient(host=config.THRIFT_HOST, port=config.THRIFT_PORT) as client: res = client.send(data) return res
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def generate_pwd(number=8): """ Generate radom secure password :return: random string for pasword """ generater = pwgen.pwgen password = generater(number) return password
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def map_remove_by_value_rank_range_relative( bin_name, value, offset, return_type, count=None, inverted=False): """Create a map remove by value rank range relative operation Create map remove by value relative to rank range operation. Server removes and returns map items nearest to value and greate...
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def _has_scf_convergence_message(output_str): """ Assess whether the output file string contains the message signaling successful convergence of the SCF procedure. :param output_str: string of the program's output file :type output_str: str :rtype: bool """ pattern = 'Conve...
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from typing import List from re import I from typing import Union def append_measure_register(program: Program, qubits: List = None, trials: int = 10, ham: PauliSum = None) -> Program: """Creates readout register, MEASURE instruct...
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def recursive_any_to_dict(anyElement): """ Recursive any nested type into a dict (so that it can be JSON'able). :param anyElement: Just about any 'attrs-ized' instance variable type in Python. :return: A dict structure """ if isinstance(anyElement, dict): simple_dict = {} for key...
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from typing import OrderedDict def genListHeaders(P4Graph): """ Generate the dictionnary of headers. P4Graph : JSon imported file Name, size """ headers = OrderedDict() return headers
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def colorize(s, color, bold=False, reverse=False, start=None, end=None): """ Colorize a string with the color given. :param string s: The string to colorize. :param color: The color to use. :type color: :class:`Colors` class :param bool bold: Whether to mark up in bold. :param bool reverse:...
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def join_url(url, *paths): """ Joins individual URL strings together, and returns a single string. Usage:: >>> join_url("pillar:5000", "shots") 'pillar:5000/shots' """ assert isinstance(url, string_type), 'URL must be string type, not %r' % url url_parts = [url.rstrip('/')] ...
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def has_liked(obj, user_or_id): """whether the objects is liked by an user. :param obj: Any Django model instance. :param user_or_id: :class:`~hashup.users.models.User` instance or id. """ obj_type = get_obj_type_for_model(obj) if isinstance(user_or_id, get_user_model()): user_id = use...
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def _int_to_riff(i: int, length: int) -> bytes: """Convert an int to its byte representation in a RIFF file. Represents integers as unsigned integers in *length* bytes encoded in little-endian. Args: i (int): The integer to represent. length (int): The number of...
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def read(filename): """ Read the file """ if "time" not in filename.name: args = dict(unpack=True, comments="P", skiprows=2) else: args = dict(unpack=True, delimiter=":", usecols=1) data = np.loadtxt(filename, **args) return data
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from typing import List def get_site_surveys(client: SymphonyClient, location: Location) -> List[SiteSurvey]: """Retrieve all site survey completed in the location. Args: location ( `pyinventory.consts.Location` ): could be retrieved from getLocation or addLocation api Returns: ...
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def backwardEliminationP(x, y, sl): """Function that applies a Backward Elimination on a model with p-values only Arguments: x {Array} -- The Predictors values y {Array} -- The Dependent Variable sl {Float} -- The Significance Level Returns: Array -- The New Optimized M...
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import pathlib def sample_odb_fixture(): """Get the fully qualified path to the sample odb file.""" return str(pathlib.Path(__file__).parent.parent / "resources" / "sample.odb")
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def day_of_week(df): """Return weekday/weekend using NHTSA convention.""" hr = df['HOUR'] day = df['DAY_WEEK'] conditions = [ (((day == 2) & hr.between(6, 23)) | day.isin([3, 4, 5]) | ((day == 6) & (hr.between(0, 17) | (hr == 24)))), (((day == 6) & hr.between(18, 23)) | day.isi...
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def C_r(m_pert, m_c, a, j1, j2): """ Constant from resonant part of disturbing function (M+D equation 8.32) """ alpha = (j2/(j2-1))**(2/3) P = 2*np.pi*np.sqrt(a**3/m_c) n = 2*np.pi/P return (m_pert/m_c)*n*alpha*f_d(j1, alpha)
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import six import collections def to_iterable(item): """Converts an item or iterable into an iterable.""" if isinstance(item, six.string_types): return [item] elif isinstance(item, collections.Iterable): return item else: return [item]
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def reproject(link, node, epsg): """ reporoject link and node geodataframes for nodes, update X and Y columns """ link = link.to_crs(epsg=epsg) node = node.to_crs(epsg=epsg) node["X"] = node["geometry"].apply(lambda p: p.x) node["Y"] = node["geometry"].apply(lambda p: p.y) retur...
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def conv2d(conv_input, n, kernel, stride, pad, name='', bias=True, init_method=None, scale=0.1): """ define simple 2d convlution """ if init_method == 'kaiming_normal': std = nn.initializer.calc_normal_std_he_forward( conv_input.shape[1], n, kernel=(kernel, kernel)) w_init =...
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import tqdm def get_accuracy(params_repl, nbr_samples): """Returns accuracy evaluated on the test set.""" good = total = 0 steps = nbr_samples // batch_size #20000 // batch_size for _, batch in zip(tqdm.trange(steps), ds_test.as_numpy_iterator()): predicted = vit_apply_repl(params_repl, batch['image']) ...
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from typing import cast def binary_search(ib, sequence_offset, search_range, sorted_sequence, value, right, out_dtype): """Common IR generator for binary search used by CPU and GPU backends. `sorted_sequence` is a N-D Buffer whose innermost dimension we want to search for `value`, and `search_range` is t...
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import re def genbank_features_parser(input_filename): """ Return dictionary with features contains inside a genbank file. :param str input_filename: genbank formated file """ logger.warning("deprecated. please use GenBank.genbank_features_parser instead") new_feature = {} records = {} fe...
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def guess_shape(dic): """ Determine data shape and complexity from Bruker dictionary. Returns ------- shape : tuple Shape of data in Bruker binary file (R+I for all dimensions). cplex : bool True for complex data in last (direct) dimension, False otherwise. """ # determ...
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def diff_element_with_children(): """Construct a DiffElement that has some diffs of its own as well as a child diff with additional diffs.""" # parent_element has differing "role" attribute, while "location" does not differ parent_element = DiffElement("device", "device1", {"name": "device1"}) parent_el...
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def cohort_preview(): """List the samples, cases, and counts a given set of cohort filters would produce""" code = None response_obj = None st_logger.write_text_log_entry(log_name, activity_message.format(request.method, request.full_path)) try: cohort_counts = get_cohort_counts() ...
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def rle(inarray): """ run length encoding. Partial credit to R rle function. Multi datatype arrays catered for including non Numpy returns: tuple (runlengths, startpositions, values) """ ia = np.asarray(inarray) # force numpy n = len(ia) if n == 0: return (None, ...
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def extract_coordinates_combined(ref, trj, sel_string, out_name, start_frame=0, verbose=False): """ Extracts selected coordinates from several trajectory files. Parameters ---------- ref : list of str File names for the reference topologies. Can read all MDAnalysis...
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def route_search(search_string): """ Searches through titles. Parameters ---------- search_string : str The search string. Returns ------- A JSON string that contains a list of the found titles grouped by categories. """ result = _search_video_titles(search_string) ...
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def katamari(): """creates and returns the katamari object""" k = Katamari() return k
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