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import six def parse_fetch_response(text, normalise_times=True, uid_is_key=True): """Pull apart IMAP FETCH responses as returned by imaplib. Returns a dictionary, keyed by message ID. Each value a dictionary keyed by FETCH field type (eg."RFC822"). """ if text == [None]: return {} res...
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def compute_result(result_parameter, inputs, env, fix_point): """ Funciton to generate the expected result of the testcase. Arguments --------- result_parameter: Either OutputArgument or ReturnValue (see pulp_dsp_test.py) inputs: Dict mapping name to the Argument, with arg.value, arg.ctype (and...
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import re def read_mp_feat(pred_path): """ if no prediction was done take mp_feat_norm """ header = [] temp = {} test = makehash() for line in open(pred_path, "r"): line = line.rstrip("\n") if line.startswith(str("ID") + "\t"): header = re.split(r"\t+", line) ...
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from typing import Any def netconf_capabilities(task: Task, **kwargs: Any) -> Result: """nornir get netconf capabilities :params task: type object :returns: nornir result object """ conn = task.host.get_connection( connection="netconf", configuration=task.nornir.config ) results =...
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def objective_fun(beta, lam, K, y): """Dual objective of binary kernel SVMs with intercept.""" # The dual objective is: # fun(beta) = 0.5 beta^T K beta - beta^T y # subject to # sum(beta) = 0 # 0 <= beta_i <= C if y_i = 1 # -C <= beta_i <= 0 if y_i = -1 # where C = 1.0 / lam return 0.5 * jnp.dot(beta,...
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def is_unquoted_text(token): """ :param token: Token :return: boolean """ return isinstance(token, UnquotedText)
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def gallery(request): """renders the gallery for all images """ if request.user.is_authenticated(): return render(request, 'gallery.html') return HttpResponseRedirect("/")
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def rel_rmse(obs, mod): """returns RMSE of model results given observations""" arg = ((mod - obs) / obs) ** 2 return sqrt(nanmean(arg))
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import json import logging def spell_check(request): """ Returns a HttpResponse that implements the TinyMCE spellchecker protocol. """ try: if not enchant: raise RuntimeError("install pyenchant for spellchecker functionality") raw = force_text(request.body) input =...
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def initialize_firebase(): """Initialize Firebase, unless already initialized. Returns: (Firestore client): A Firestore database instance. """ try: initialize_app() except ValueError: pass return firestore.client()
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def evaluate_(batch_iter, model): """ To evaluate the model in EDU segmentation. 因内存原因,我们依旧选择批量运算的方式 不同的解码评测,不同的是,这个模式下只要一句一句进行,因为边界是未知 的,所以模型要做完边界预测才知道下一步做什么。 """ c_b, g_b, h_b = 0., 0., 0. for n_batch, (inputs, target) in enumerate(batch_iter, start=1): word_ids, word_e...
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from typing import Tuple from pathlib import Path def saved_model(od_detection_learner, tiny_od_data_path) -> Tuple[str, Path]: """ A saved model so that loading functions can reuse. """ model_name = "test_fixture_model" od_detection_learner.save(model_name) assert (Path(tiny_od_data_path) / "models" ...
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import itertools def build_instance(ξ, n, m, r, D): """The graph generation algorithm.""" assert n <= m <= n * (n - 1), f"invalid number of arcs {m=}" network = Network(nodes=range(n)) # Create optimal shortest path tree m_neg = nb_neg_arcs(n, m, r) m_neg_tree = nb_neg_tree_arcs(ξ, n, m, m_neg...
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import pathlib def _check_if_python_module_exists(path: str) -> bool: """Check if an Earth Engine python module has been created from a JavaScript module in ee_extra. Args: path: str Returns: Whether the python module has been created. """ return pathlib.Path(_convert_path_to_ee_...
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def conv2d_bn(x, filters, num_row, num_col, padding='same', strides=(1, 1), name=None): """Utility function to apply conv + BN. Arguments: x: input tensor. filters: filters in `Conv2D`. num_row: height o...
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def rho_basis(qubits): """ Generates a complete orthonormal basis composed of pure states for the n-qubit density matrix. :param qubits: number of qubits :type qubits: int :return: pure state spectral decomposition :rtype: np.ndarray, float """ return np.array([i*np.conjugate(j)....
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def formatted_value(value, array=True): """Format a given input value to be compliant for USD Args: array (bool): If provided, will treat iterables as an array rather than a tuple """ if isinstance(value, str): value = '"{}"'.format(value.replace('"', '\\"')) elif isinstance(value,...
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import math def estimate_highest_divisor(method, divisor, populations, seats): """ Calculates the estimated highest possible divisor. :param method: The method used. :type method: str :param divisor: A working divisor in calculating fair shares. :type divisor: float :param populations: ...
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def growth_rate(x, steps=1): """ calculates first differences""" return x[steps:]-x[:-steps]
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def vit_base_patch16_224_in21k(num_classes: int = 21843, has_logits: bool = True): """ ViT-Base model (ViT-B/16) from original paper (https://arxiv.org/abs/2010.11929). ImageNet-21k weights @ 224x224, source https://github.com/google-research/vision_transformer. weights ported from official Google JAX i...
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def rigidbodies(traj,pdb_output=None,pdb_keep_all=False,pdb_filter=False,cluster_output=False,cutoff=None,ndomains=2,similarity_type='distance_fluctuation',similarity_binarize=None): """rigidbodies Description ----------- Rigid body decomposition through Ward clustering of a pariwise atom similarity ma...
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def swinnet50ts_256(pretrained=False, **kwargs): """ """ kwargs.setdefault('img_size', 256) return _create_byoanet('swinnet50ts_256', 'swinnet50ts', pretrained=pretrained, **kwargs)
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import logging def produce_segmentation(mtx, gamma, good_bins='default', method='modularity', max_intertad_size=3, max_tad_size=10000): """ Produces single segmentation (TADs or CDs calling) of mtx with one gamma with the algorithm provided. :param mtx: input numpy matrix :param gamma: parameter for s...
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def role_required(*roles): """Ensure that logged in user has one of the required roles. Return 403 if the user doesn't have a required role. Should be applied before the `@login_required` decorator: @login_required @role_required('admin', 'admin-ccs-category') def view(): ...
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def ResNet50(inputs): """ Implementation of the popular ResNet50 the following architecture: CONV2D -> BATCHNORM -> RELU -> MAXPOOL -> CONVBLOCK -> IDBLOCK*2 -> CONVBLOCK -> IDBLOCK*3 -> CONVBLOCK -> IDBLOCK*5 -> CONVBLOCK -> IDBLOCK*2 -> AVGPOOL -> TOPLAYER Arguments: input_shape -- shape of th...
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import csv def readCSV(path, datatype=float, realVal=True): """ Function to read from a CSV file in the given path. Rows of the CSV file are read in as list into an arrays. Parameters ---------- path : str path to the CSV file Returns ------- list list containing the ...
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import torch def build_lm_1(state_dict_path): """ :meta private: """ model = SkipLSTM(21, 100, 1024, 3) state_dict = torch.load(state_dict_path) model.load_state_dict(state_dict) model.eval() return model
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from typing import Union from pathlib import Path def _filename(path: Union[str, Path]) -> str: """Get filename and extension from the full path.""" if isinstance(path, str): return Path(path).name return path.name
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def stitch(probs, positions, decode_consensus_func): """Stitch predictions on chunks into a contiguous sequence. Args: probs: 3D array of predicted probabilities. no. of chunks X no. of positions in chunk X no. of bases. positions: Corresponding list of position array for each chunk in probs. ...
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from typing import Optional from typing import Union def sync( *, client: AuthenticatedClient, form_data: FormBody, multipart_data: MultiPartBody, json_body: Json, ) -> Optional[Union[str, int]]: """ POST endpoint """ return sync_detailed( client=client, form_data=form_dat...
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def O2_sat(P_air, temp): """This equation returns saturaed oxygen concentration in mg/L. It is valid for 278 K < T < 318 K Parameters ---------- Pressure_air : float air pressure with appropriate units. Temperature : water temperature with appropriate units Returns ----...
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def new_version_available(): """ Checks this version and checks the download site for a new version. """ return current_version() < available_version()
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def getAppModuleFromProcessID(processID: int) -> AppModule: """Finds the appModule that is for the given process ID. The module is also cached for later retreavals. @param processID: The ID of the process for which you wish to find the appModule. @returns: the appModule """ with _getAppModuleLock: mod=runningTab...
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import logging def new_algo_logger(): """ Create and return a logger for the simulation algorithms. :return: Logger object from the logging library """ algo_logger = logging.getLogger("algo_logger") algo_logger.propagate = False formatter = logging.Formatter(ALGO_LOGGER_FORMAT) strea...
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def device(request): """Run a test case for all available devices.""" return request.param
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def _xls_eval_ir_test_impl(ctx): """The implementation of the 'xls_eval_ir_test' rule. Executes the IR Interpreter on an IR file. Args: ctx: The current rule's context object. Returns: DefaultInfo provider """ src = ctx.file.src runfiles, cmd = get_eval_ir_test_cmd(ctx, src) ...
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def map_dimensions_to_integers(dimensions): """ FragmentSelector requires percentages expressed as integers. https://www.w3.org/TR/media-frags/#naming-space """ int_dimensions = {} for k, v in dimensions.items(): int_dimensions[k] = round(v) return int_dimensions
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def get_source_title(meta_data): """ get source title for cards on web app :return: string """ if 'source_title' in meta_data: return meta_data['source_title'] crawler_used = meta_data["crawler_used"] display_source = CRAWLER_TO_SOURCE_TITLE_LOOKUP[crawler_used] return display_...
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from typing import Union from typing import List from typing import Tuple def write_LUT_SonySPI3D( LUT: Union[LUT3D, LUTSequence], path: str, decimals: Integer = 7 ) -> Boolean: """ Writes given *LUT* to given *Sony* *.spi3d* *LUT* file. Parameters ---------- LUT :class:`LUT3D` or :cl...
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def padstr(x, align=8): """Pad string x with null bytes so it's a multiple of align bytes long. Return bytes object""" nbytes = len(x) rem = nbytes % align npadbytes = align - rem if rem else 0 # nbytes to pad with for 8 byte alignment x = x.encode('ascii') # ensure it's pure ASCII, where each c...
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def rmsprop(step_size, gamma=0.9, eps=1e-8): """Construct optimizer triple for RMSProp. Args: step_size: positive scalar, or a callable representing a step size schedule that maps the iteration index to positive scalar. Returns: An (init_fun, update_fun, get_params) triple. """ step_size = mak...
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def get_mail(monitoring: Monitoring): """ メールを取得する Params ------ monitoring: Monitoring 監視設定オブジェクト """ config = Config() run_time = RunTime(monitoring.search_word) # メールボックスへの接続 credentials = (config.client_id, config.client_secret) token_backend = FileSystemTokenBa...
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def grpdelay(b, a=1, nfft=512, whole='none', analog=False, Fs=2.*pi): #================================================================== """ Calculate group delay of a discrete time filter, specified by numerator coefficients `b` and denominator coefficients `a` of the system function `H` ( `z`). ...
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def request_recognizer(user_id, message): """ Выделяет команду из сообщения и передает на выполнение ответственному модулю :param user_id: str or int :param message: str :return: tuple(str, tuple(str, bool)) """ answer = "Не понял вас. Напиши 'помощь', чтобы узнать мои команды", ('text',) ...
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def unbox(boxed_pixels): """ assumes the pixels came from box and unboxes them! """ flat_pixels = [] for boxed_row in boxed_pixels: flat_row = [] for pixel in boxed_row: flat_row.extend(pixel) flat_pixels.append(flat_row) return flat_pixels
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from re import T def log_multinomial(x, p, eps=0.0): """ Compute log pdf of multinomial distribution .. math:: \log p(x; p) = \sum_x p(x) \log q(x) where p is the true class probability and q is the predicted class probability. Parameters ---------- x : Theano tensor Va...
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import re def parse_human_input(file_size): """Parse an input in human-readable format and return a number of bytes.""" multipliers = { "K": 10 ** 3, "M": 10 ** 6, "G": 10 ** 9, "T": 10 ** 12, "Ki": 2 ** 10, "Mi": 2 ** 20, "Gi": 2 ** 30, "Ti": 2 ...
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def check_internet_connection(ad, ping_addr): """Validate internet connection by pinging the address provided. Args: ad: android_device object. ping_addr: address on internet for pinging. Returns: True, if address ping successful """ droid, ed = ad.droid, ad.ed ping = d...
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def create_frozen_request(sheet_id, rows=None, cols=None): """ Create v4 API request to freeze rows and/or columns for a given worksheet. """ grid_properties = {} if rows is not None and rows >= 0: grid_properties["frozen_row_count"] = rows if cols is not None and cols >= 0: ...
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from pathlib import Path def create_path(): """function to create traffic monitor directory""" data_store_path = '~/Documents/TrafficMonitor' path = Path(data_store_path).expanduser() path.mkdir(parents=True, exist_ok=True) return str(path)
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def search(request): """ Search page view """ try: query = request.GET.get('query') if len(query) < 3: messages.warning(request, "Search query must be at least 4 characters.") query = "NONE" except: query = "NONE" cards = Card.objects.filter(nam...
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def gauss_function(x, a, x0, sigma): """ Gaussian _________ Arguments: x (float or float array) - argument a (float) - amplitude x0 (float) - mathematical expectation sigma (float) - standard deviation __________________________________ Returns: Gauss function by formula ...
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import requests import random def bingimage(text, bot): """<query> - returns the first bing image search result for <query>""" api_key = bot.config.get("api_keys", {}).get("bing_azure") # handle NSFW show_nsfw = text.endswith(" nsfw") # remove "nsfw" from the input string after checking for it ...
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def convert_to_axes(axes, container=tuple): """Convert `obs` to the list of obs, also if it is a :py:class:`~ZfitSpace`. Return None if axes is None. Raises TypeError: if the axes are not int """ if axes is None: return axes axes = convert_to_container(value=axes, container=cont...
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def aumentar(n=0, p=0, formato=False): """ Somar porcentagem :param n: número a ser somado :param p: porcentagem a ser somada :param formato: (opicional) mostrar o moeda :return: resultado """ n = float(n) resultado = n + (n * p / 100) return moeda(resultado) if formato else resu...
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import math def calculate_threshold_value(q: int, t: int, p: int, lmbda: int, w: float, lower_val: float, upper_val: float, ...
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import pandas as pd import pbio.misc.parallel as parallel def _parse_gtf_group(rows): """ This is a helper function for parsing GTF attributes from a data frame. It is not intended for external use. """ res = parallel.apply_df_simple(rows, parse_gtf_attributes) res = pd.DataFrame(res) retu...
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def z_levels(fid, x, y, variable, n_levels, n_frames, t_idx, symflag, n_lev_auto, n_dec, n_seg, avleng): """ list(float) = zlevels(fid, variable, n_levels, n_frames, t_idx, symflag, n_lev_auto, n_dec, n_seg, avleng) """ z_levs_auto = auto_z_levels(fid, x, y, variab...
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from typing import Union import io from typing import Optional def getint( string: Union[io.StringIO, str], key: str, section: Optional[str] = None ) -> Union[int, None]: """get option's value in `int` type""" val = get(string, key, section) if val: return int(val)
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def fec_old_patch(): """ Further Education College UK RSF patch generated with the old `rsfcreate.py` script. """ with open("tests/fixtures/fec_old_patch.rsf") as handle: return handle.read().splitlines()
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def get_n_pixels(bad_bin_mask, window=10, ignore_diags=2): """ Calculate the number of "good" pixels in a diamond at each bin. """ N = len(bad_bin_mask) n_pixels = np.zeros(N) loc_bad_bin_mask = np.zeros(N, dtype=bool) for i_shift in range(0, window): for j_shift in range(0, window)...
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def ruleset_refresh(p_engine, p_username, rulesetname, envname): """ Refresh ruleset on the Masking engine param1: p_engine: engine name from configuration param2: rulesetname: ruleset name param3: envname: environment name return 0 if added, non 0 for error """ return ruleset_worker(p_...
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from typing import Any def str_or_raise(value: Any) -> str: """Return string or raise exception.""" return enforce_type(str_or_none(value), str)
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def trima(close, timeperiod=30): """Triangular Moving Average 三角移动平均线 the triangular moving average (TMA) is a technical indicator that is similar to other moving averages. The TMA shows the average (or mean) price of an asset over a specified number of data points—usually a number of price bars. H...
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def CheckCardinalities(*cardinality): """Checks cardinality values for compatibility. None is treated as a wild card that matches all cardinalities. It returns the resulting cardinality, or None if all are wild cards. If they don't match then a ProcessingError is raised.""" cReturn = None for...
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async def index_route(request): """ Redirect to the dashboard. """ return response.redirect('/jobs')
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def make_format_plugin_table(group="waveform", method="read", numspaces=4, unindent_first_line=True): """ Returns a markdown formatted table with read waveform plugins to insert in docstrings. >>> table = make_format_plugin_table("event", "write", 4, True) >>> print(tab...
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def create_gsheet(gc, eid, program_db): """ Creates a Google sheet for the program. :param gc: The `gspread.Client` object. Should have called `gc = authorize_google_sheets()` before passing into this function. :type gc: `gspread.Client` object :param eid: The eid of the program. :type...
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def probability_of_selection(spt, snr): """ probablity of selection for a given snr and spt """ ref_df=SELECTION_FUNCTION.dropna() #self.data['spt']=self.data.spt.apply(splat.typeToNum) interpoints=np.array([ref_df.spt.values, ref_df.logsnr.values]).T return griddata(interpoints, ref_df.tot_...
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def entryPoint(coursesCompleted, coursesDesired, startSem): """ This is the entry point function for the ILP scheduler. coursesCompleted: a list of courses that the person already has credits for coursesDesired: a list of courses that the person wants to take. startSem: either 0 or 1 indicating wet...
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def render(template, context=None, **kwargs): """ Return the given template string rendered using the given context. """ renderer = Renderer() return renderer.render(template, context, **kwargs)
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def deserialize_graph(data): """De-serialize from the given json data.""" graph = import_class(data['module'], data['cls'])() graph._nodes = [] for node in data['nodes']: graph._nodes.append(deserialize_node(node)) nodes = {n.identifier: n for n in graph.nodes} for node in data['nodes']:...
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def normalCdf(x,mu=0.0,sigma=1.0): """ Computation of normal cdf @ In, x, list or np.array, x values @ In, mu, float, optional, mean @ In, sigma, float, optional, sigma @ Out, cdfReturn, list or np.array, cdf """ return stats.norm.cdf(x,mu,sigma)
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def transform(codec): """ transform post """ if codec not in CODECS: return abort(404) return run(codec, request.get_data())
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def largest_connected_component(H): """ A function to find the largest connected component of a hypergraph. Parameters ---------- H: Hypergraph object The hypergraph of interest Returns ------- set The largest connected component (a set of nodes) of the hypergraph. ...
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import time def log_str(proc_str, start): """Create a preamble string for stdout.""" former = "[{:>4}".format(proc_str) latter = "] {:.2f}".format(round(time.time() - start, 3)) return former + latter
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def authenticate_user_from_request(request): """ Given a request, attempt to authenticate based on Auth Header Scheme/Credentials Called via the middleware, etc """ # Step 1: Detect if we have an Auth Header raw_auth_header_val = request.headers.get('Authorization', None) if not raw_auth_he...
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def linear_kernel(X, Y=None): """Compute linear Gram matrix between X and Y (or X) Parameters ---------- X: torch.Tensor of shape (n_samples_1, n_features) First input on which Gram matrix is computed Y: torch.Tensor of shape (n_samples_2, n_features), default None Second input on whic...
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def split_to_pieces(number, name, lang, doc_path): """ :param number: id number of document :param name: file name :param lang: language one of ENG, RUS, ESP, JAP, etc. :param doc_path: document path :return: pieces ids :structure: list(ObjectId Bson) """ if len(doc...
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def hit(health): """Hits health for a random number between 1 and 10""" hit_value = random.randint(1, 10) print "hits for:", hit_value health = health - hit_value print "health now:", health return health
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from joblib import Parallel, delayed def parallel_func(func, n_jobs): """Return parallel instance with delayed function Util function to use joblib only if available Parameters ---------- func: callable A function n_jobs: int Number of jobs to run in parallel Returns ...
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def evaluate_task_accuracy(scenario, prediction_results, subclasses, null_label=NULL_LABEL): """ Evaluates the accuracy of the predictor for each task, where we consider the best possible performance as the ground truth. The best possible is the perfect labeling for current iteration. :param scenario: ...
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def _graycode(bqm): """Get a numpy array containing all possible samples in a gray-code order""" # developer note: there are better/faster ways to do this, but because # we're limited in performance by the energy calculation, this is probably # more readable and easier. n = len(bqm.variables) ns...
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def get_indices_of_line(l, angle, dist): """ Return indices in square matrix of <l>x<l> for Hough line defined by <angle> and <dist> """ # Get start and end points of line to traverse from angle and dist x0, y0, x1, y1 = get_extremes(angle, dist, l) # To ensure no lines are defined outside th...
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def get_oaa_connection(agent): """return the LibOaa OAA connection for the specified agent, or None if none exists""" if _AGENT_OAA.has_key(agent): return _AGENT_OAA[agent] return None
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def diaresnet18(**kwargs): """ DIA-ResNet-18 model 'DIANet: Dense-and-Implicit Attention Network,' https://arxiv.org/abs/1905.10671. Parameters: ---------- pretrained : bool, default False Whether to load the pretrained weights for model. root : str, default '~/.chainer/models' ...
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def mc_indices(context_vector, fns, mc = 50): """Return the indices of the @mc highest values of context_vector. @fns is just for reference. Not really optimized. """ # If the context vector has more nonzero elements than mc, only take the mc occurrences! if len(np.flatnonzero(context_vector)) > mc...
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def split_date(dates): """ Split datetime64 dates into year, month, day components. """ y = dates.astype("<M8[Y]").astype(int) + 1970 m = dates.astype("<M8[M]").astype(int) % 12 + 1 d = (dates - dates.astype("<M8[M]")).astype("<m8[D]").astype(int) + 1 return y, m, d
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from typing import Dict def random_random_crop(image: tf.Tensor, size: tf.Tensor, groundtruths: Dict[str, tf.Tensor], seed=None) -> (tf.Tensor, tf.Tensor): """Will `randomly` perform a random crop of a tensor to a given size. Slices a shape ...
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def flowless(hyper_list, T, weight=None): """ Implementation of greedy++ algorithm proposed in [1]. It efficiently compute almost densest subgraph without max flow. Parameters ---------- G: undirected, graph (networkx). T: int, number of iterations. weight: str that specify the edge att...
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def getDmzProxySecurityActionValue( nodename, proxyname, action, ): """Gets an individual security value""" return getDmzProxySecurityActionLevelOrValue( nodename, proxyname, action, 'values' )
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def get_left_right_spans(ribo): """ In counting number of reads going to each region (UTR5, CDS and UTR3), We artificially introduce two regions UTR5_junction: A region between UTR5 and CDS containing the start site [start_site - left_span, start_site + leftspan] UTR3_junction: ...
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def filters_effect( ftype=None, cutoff_hz=None, sfreq=None, width_hz=None, ripple_db=None, window=None, ): """ Generate example filter input-output plots for pure sinewave data. Parameters ---------- key=val see :ref:`check_filter params() Parameters <filter_parameters_label>` R...
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def _aggregate(y, aggfunc, weights): """Apply aggregation function by row. Parameters ---------- y : pd.DataFrame Multivariate series to transform. aggfunc : str Aggregation function used for transformation. weights : list of floats Weights to apply in aggregation. ...
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def create_session(engine): """ Create a session for accessing the DB. """ return sqla.orm.scoped_session( sqla.orm.sessionmaker( autocommit=False, autoflush=False, bind=engine ) )
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from datetime import datetime def request(caller_id): """ Method requests single PublicIP address for caller. If caller's quota is exceeded, exception is raised. Otherwise caller obtains a new PublicIP address. @cmview_user @response{string} newly obtained PublicIP's address @raises{publ...
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def get_user_tweets(user_name): """Retrieve all (accessible) tweets from a given user name by stepping backward through the status paging""" all_tweets, lowest_id = _get_user_tweets_batch(user_name) while True: next_batch, lowest_id = _get_user_tweets_batch(user_name, lowest_id) all_tweets +...
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def hex_to_chars(num): """ Convert the hex representation of the number to a correctly ordered string. Parameters ---------- val: int The integer representing the string. This is in reverse order. Ie. XXYYZZ -> chr(ZZ)chr(YY)chr(XX) Returns ------- str The actua...
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def Split(l, indexes, axis=-1, merge_sublayers=False, name=""): """\ Split layer into a list of tensor layers. :param l: parent layer :param indexes: ``[20, 60] => [:20, 20:60, 60:]`` :param axis: which axis to split on (-1 = last) :merge_sublayers: merge layers symbolically (affects plotting)...
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import pickle def load(filename): """ Load a compressed pickle from disk """ return pickle.loads(_loads(filename))
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