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import scipy def doLogLikelihoodTest( complex_ll, complex_np, simple_ll, simple_np, significance_threshold = 0.05): """perform log-likelihood test between model1 and model2. """ assert complex_ll >= simple_ll, "log likelihood of complex model smaller than...
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def get_num_from_user(str_info, lower, upper): """Ask and returns a integer inputted by the user from a set range. :param str_info: Text shown to the user :param lower: Inferior range limit :param upper: Superior range limit :return: Integer from the user """ flag_finish = False aux_inp...
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def _import_resource(fixture_name, editor_group=None): """ Imports the XML resource description with the given file name. The new resource is published and returned. """ result = test_utils.import_xml('{0}/repository/fixtures/{1}' .format(ROOT_PATH, fixture_n...
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def edit_distance(s1: str, s2: str) -> int: """The minimum number of edits required to make s1 equal to s2. This is also known as the Levenshtein distance. An edit is the addition, deletion, or replacement of a character. """ if not s1: return len(s2) if not s2: return len(s1) M = [[0 for _ in...
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def parse_seed(secret): """Your Stream secret is a seed from which the true private key can be derived. The ``Seed.parse_json()`` method of stm-lib supports different ways of specifying the seed, including a 32-byte hex value. We just support the regular base-encoded secret format given to you by t...
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import requests def suggest_username(query: str) -> list: """ Function suggest the username for the Instagram Accounts by Instagram """ with requests.session() as s: response = s.get(home_url) token = response.cookies["csrftoken"] headers["x-csrftoken"] = token dat...
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def removeTags(text): """ """ # {} wrapper generates a set instead of list to deal with repeated tags tags = {tag.strip('#') for tag in text.split() if tag.startswith("#")} text = text.replace('#', '') return (text, tags)
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def _remap_cortex_out(cortex_out, region, out_file): """Remap coordinates in local cortex variant calls to the original global region. """ def _remap_vcf_line(line, contig, start): parts = line.split("\t") if parts[0] == "" or parts[1] == "": return None parts[0] = contig...
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def to_base(base: t.Literal[2, 8, 16], number: int) -> str: """Convert any passed integer into given base as string.""" if base == 2: return bin(number).replace("0b", "") elif base == 8: return oct(number).replace("0o", "") elif base == 16: return hex(number).replace("0x", "")
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def get_serial_model(session_obj): """Get device serial number and model""" global session session = session_obj serial = None model = None show_inventory = send_command('show inventory') for i in show_inventory.splitlines(): if i.rfind('Chassis') != -1: model = i.sp...
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def find_nearest(known_array, test_array): """Find closest value in `known_array` for each element in `test_array`. Parameters ---------- known_array : numpy array consisting of scalar values only; shape: (m, 1) test_array : numpy array consisting of scalar values only; shape: (n, 1)...
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import array def ReadNormalTag(tag): """ Read the raw data stored in Normal Tag. :param tag: The Normal Tag to read the data from. :type tag: c4d.NormalTag :return: A list with all the raw data. :rtype: list[int] """ # Retrieves the read buffer array buffer = tag.GetLowlevelDataAd...
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def power_out_time(value): """ 0 - 32767 seconds """ return "Seconds:{}".format(value)
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def _album_is_reviewed(album, user_key): """Check if an album has been reviewed. Args: album: An Album entity user_key: A stringified user key, or None. Returns: If user_key is None, returns True if and only if the album has any reviews at all. If user_key is not None, retu...
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def cubehandler(f): """ Wrap a function from metpy.calc submodule to pass iris cubes as arguments and get cubes as output. Copies coordinates from the first cube among the arguments. Only copies `dim_coords` and `aux_coords`. May not work with some units. """ @wraps(f) def wrapper(...
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def read_argv(argv): """Reads the config and source file from argvs""" try: config_file = argv[0] source_file = argv[1] return config_file, source_file except: Corrector.exit( "Invalid arguments when running corrector. e.g python corrector.py settingsPath sourcePa...
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def position_encoding_init(n_position, d_pos_vec): """ Generate the initial values for the sinusoid position encoding table. """ position_enc = np.array([[ pos / np.power(10000, 2 * (j // 2) / d_pos_vec) for j in range(d_pos_vec) ] if pos != 0 else np.zeros(d_pos_vec) for pos in rang...
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def _require_auth(fnc): """Authentication decorator.""" @wraps(fnc) @_assure_identity def _wrapped(*args, **kwargs): if not identity.authenticated: msg = "Authentication required before calling '%s'." % fnc.__name__ raise exc.NotAuthenticated(msg) return fnc(*args...
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def get_random_word(alphabet: str, length: int): """Generate a random word on alphabet with given length""" random_word = '' for i in range(length): random_word += alphabet[randint(0, len(alphabet) - 1)] return random_word
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import sqlite3 def load_history_db(history_db): """ Load simulation history from provided db. In case no db is given, returns an empty history :param history_db: :return: """ history = {} if history_db is not None: conn = sqlite3.connect(history_db) cursor = conn.cursor() ...
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import functools def compute_network_criticality( parameters, module_objective_fn, init_loop_variables_mapping, final_loop_variables_mapping, ): """Compute the criticality of a network parameterized by `parameters`.""" def _module_criticality_by_ref(layer_ref): return compute_module_criticali...
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import shutil def async_get_engine(hass, config): """Set up macOS speech component.""" if shutil.which("say", path="/usr/bin") is None: _LOGGER.error("'/usr/bin/say' not found") return False if shutil.which("reattach-to-user-namespace", path="/usr/local/bin") is None: _LOGGER.error...
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def validate_data(first_name, age,investment_amount,risk_level, intent_request): """ Validates the data provided by the user. """ # Validate that the user is over 0 and less than 65 if first_name is None: # first_Name validation # age=parse_int(age) return build_validatio...
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def get_targets(data, n_groups): """ In order to obtain our final set of labels for the data, this function transforms the data first using PCA, then Agglomerative Hierarchical Clustering. It returns the target labels as a pandas dataframe. Parameters: data: The dataset in question. n_g...
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def string_to_datetime(timestamp_string): """Convert string timestamp to datetime instance.""" try: return dt.datetime.strptime(timestamp_string, "%Y-%m-%dT%H:%M:%S.%fZ") except ValueError: return dt.datetime.strptime(timestamp_string, "%Y-%m-%dT%H:%M:%SZ")
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from typing import Any def _filter_keep(value: Any, keep_always: bool) -> bool: """Determine whether we should keep a value in serialized output.""" if keep_always: return True return value is not MISSING
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def GetScopedName(scope, type_defn): """Gets the prefix string to reference a type from a given scope. This function returns a concatenation of C++ scope operators such as, in the context of the given scope, when prefixing the name of the given type, it will reference exactly that type. For example, given: ...
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def SNR(info, magnitude=24.5, exptime=565.0, exposures=3, galaxy=True, background=True, diginoise=False): """ Calculates the signal-to-noise ratio for an object of a given magnitude in a given exposure time and a number of exposures. :param info: instrumental information such as zeropoint and backgroun...
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def ipusage(request): """Lists all assets.""" inventory = netspot.NetSPOT(collection=netspot_settings.COLL_IP) search_result = inventory.search('', key='ip', sort=[("date", 1), ("time", 1)], limit=20) return render( request, 'ipusage.htm', context={'filter': '', 'ips': search_result,}, )
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def max_employment(countries, employment): """ Fill in this function to return the name of the country with the highest employment in the given employment data, and the employment in that country. """ i = np.argmax(employment) max_value = employment[i] max_country = countries[i] ret...
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def dB_to_amplitude(SNR): """Returns the amplitude ratio, converted from decibels. Arguments --------- SNR : float The ratio in decibels to convert. Example ------- >>> round(dB_to_amplitude(SNR=10), 3) 3.162 >>> dB_to_amplitude(SNR=0) 1.0 """ return 10 ** (SNR ...
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def upload_location(instance, filename, **kwargs): """Upload location for profile image""" return f"accounts/{instance.username}/{filename}"
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def v9_tail(iterable, n): """Return the last n items of given iterable. This solution uses deque, a double-ended queue class, from the collections module... We're setting the maximum size of our deque to n. When you append to a deque which has reached it's maximum length, it will efficiently remov...
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import operator def add(n_in: int = 2) -> Foldl: """Creates an addition combinator. >>> from redex import combinator as cb >>> add = cb.add() >>> add(4, 2) == 6 True Args: n_in: a number of inputs. Returns: a combinator. """ return foldl(func=operator.add, n_in=n...
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import base64 def base64url_to_hex(data): """ Converts a base64url encoded string to a hex encoded string Args: data (str): The base64url encoded string """ data = data.replace("-", "+").replace("_", "/") missing_padding = len(data) % 4 if missing_padding: data += "=" * (...
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def read_release_version(): """Read version information from VERSION file""" try: with open(VERSION_FILE, "r") as infile: version = str(infile.read().strip()) if len(version) == 0: version = None return version except IOError: return None
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def read_rpg_header(file_name): """Reads header from RPG binary file. Supports Level 0/1 and version 2/3/4. Args: file_name (str): name of the file. Returns: tuple: 2-element tuple containing the header (as dict) and file position. """ def read(*fields): block = np.fr...
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def quantize(dt, *, resolution=timedelta(minutes=15)): """Get the period from a fixed-size grid which contains the given time""" # The grid is zeroed at midnight, so resolution must fit into a day without leaving a remainder. assert not Period.DAY % resolution from_midnight = timedelta(hours=dt.hour, mi...
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def validate_redirection_target(path): """Checks if login can safely redirect to a path. For example, if instead of a path a full url is used (with a domain part), the redirect could leak a login token in the Referer header (not an obvious problem since token is intended to be one time, but better ...
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import sqlite3 def create_connection(db_file) -> sqlite3.Connection: """ This method connects to the database and returns the connection """ connection = None try: connection = sqlite3.connect(db_file) except Error as e: print(e) return connection
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def kldiv2(s, t): """ Kullback-Leibler divergence with base 2 """ return kldiv(s, t, log="2")
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def get_meta(number): """ Retrieve the level 3 classname and official RGB value for each clc class. Parameters ---------- number: int CLC_CODE of the class Examples -------- >>> get_meta(111) Returns ------- Official RGB colors as (r,g,b) Level 3 name of t...
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def submat(X,ii,jj): """ Pick a block submatrix from block matrix X by rows ii and cols jj """ return {(ix,jx): X.get((i,j), None) for (ix,i),(jx,j) in product(enumerate(ii), enumerate(jj))}
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import csv def corpus_maker(f_name): """ Takes a csv file and creates a set of decklists in list of lists, DataFrame, and tomotopy Corpus objects. Parameters: f_name: .csv file Term-document matrix: columns are card names, rows are decks, and each cell is the co...
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def summed_area_table(img): """ Use summed_area_table_fast() instead. Leaving this for reference. """ # Convert to numpy array if necessary if not isinstance(img, np.ndarray): img = np.array(img) table = np.zeros(img.shape) # Raster scan #---- Do top and left edges table[0, 0] = im...
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def find_omp(verbose=False): """ Find omp in environment. Parameters ---------- verbose : bool to print paths to include and library directories Returns ------- tuple(list(str), list(str)) path to include directory, path to library directory """ omp_include, omp...
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def safe_filename(infilename): """ Take a filename and remove special characters like the asterisk and slash which mess things up. Warning: if you pass a directory path to this function, it will remove the slashes. Do not do that. :param infilename: filename to be processed. :type infilename: strin...
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import collections from typing import Mapping def namedtuple(typename, field_names, default_values=()): """ Overwriting namedtuple class to use default arguments for variables not passed in at creation of object Can manually set default value for a variable; otherwise None will become default value ""...
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import warnings import json def _validate(nodes_fname, meta_fname, streamlines_fname): """ Run checks to ensure requirements and warns of inconsistencies. Parameters ---------- nodes_fname : str Full path to nodes table CSV file meta_fname : str Full path to metadata CSV fil...
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def _truncate_log(log_txt): """ Truncate the ``log_txt`` in case it exeeds the max. log size. :param log_txt: A ``str``. """ max_log_bytes = config.getint('job_runner_worker', 'max_log_bytes') if len(log_txt) > max_log_bytes: top_length = int(max_log_bytes * 0.2) botto...
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def length_along_path(pp, index): """ Get the lenth measured along the path up to the given index. """ index = min(index, len(pp) - 1) # beware of the end diff_squared = (pp[:index] - pp[1:index+1]) ** 2 distances = diff_squared.sum(1) return (distances ** 0.5).sum() # == sum(pp[j].distance...
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def generate_background(options): """ Fonction permettant d'ajouter un background :return: etree.Element """ width = options.width height = options.height background_group = etree.Element('g') etree.SubElement(background_group, 'title').text = 'background' background = etree.SubEle...
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import re def get_generators(cmakePath=findexe("cmake"), as_list=False): """get available CMake generators Parameter: as_list str: True to return a list of dict of all generators. Each entry consists of 'name', 'desc', and 'default' Returns: str if as_list==False else dic...
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import calendar def _get_month_info(localtime): """获取月相关的信息""" now_day = localtime.tm_mday now_year = localtime.tm_year now_month = localtime.tm_mon now_month_max_day = calendar.monthrange(now_year, now_month)[1] left_day = now_month_max_day - now_day month_percent, progress_bar = _get_pro...
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def init(cfg: GenomeConfig): """Random initialized weight value, calculated via a normal distribution.""" return clip(gauss(cfg.weight_init_mean, cfg.weight_init_stdev), a_min=cfg.weight_min_value, a_max=cfg.weight_max_value)
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def tokenize_and_tag(filepath): """Load the book's text, tokenize and tag in memory.""" with open(filepath+'.txt', 'r') as f: book = f.read() return pos_tag(word_tokenize(book))
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import json def output(): """Prints out the first 10 rows in the database""" my_query = get_database_data("SELECT * FROM Data LIMIT %s", (10,)) json_output = json.dumps(my_query, default=str) return json_output
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def get_user_env_var() -> str: """returns the environment variable "USER", if it doesn't exists, return a default value""" user_var = ps.get_env_var( 'USER' ) if user_var == None: user_var = 'USER' return user_var
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def RFile(): """Return a raman data file for testing.""" return 'examples/testdata/1/0001.txt'
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def zzX_mul(f, g): """Multiply polynomials in Z[X]. """ if poly_univariate_p(f): return zzx_mul(f, g) if f == g: return zzX_sqr(f) if zzX_zero_p(f): return f if zzX_zero_p(g): return g df = zzX_degree(f) dg = zzX_degree(g) h, l = [], poly_level(f)-1 ...
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def compute_performance_easy(trials): """ Compute performance on easy trials (stimulus >= 50 %) from trials object :param trials: trials object that must contain contrastLeft, contrastRight and feedbackType keys :type trials: dict returns: float containing performance on easy contrast trials ...
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import math def check_transcript_eir_tc_state(tr_id, exid2cov_dic, trid2exc_dic, filter_ei_ratio=1.0, min_ei_cov=20, min_ei_cov_sum=False, exid2isrn_dic=False, ...
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def find_node(_node_number, geometry): """ Check if node number exist in the f2u model """ _node = [] for _number in _node_number: try: _test = geometry._mesh.nodes[_number] _node.append(_number) except KeyError: continue return _node
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def confidence_score(classifier, X: np.ndarray) -> np.ndarray: """Measure the confidence score of a model for a set of samples. Args: classifier: The classifier for which the labels are to be queried. X: The pool of samples to query from. Returns: The confidence score for each samp...
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import random def roll_die(): """Returns a random int between 1 and 6""" return random.choice([1,2,3,4,5,6])
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def report(uid): """ Render object report for verify """ database = DataProvider() # get checklist and show it in edit mode item = first_or_default(database.checklists, lambda x: x.uid == uid) item.visit_by(session['user_name']) database.update_checklist(item) questions = database.checklist ...
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def convert_to_HSV(image): """convert RGB(BGR in opencv numpy) to HSV color space""" hsv_image = cv2.cvtColor(image,cv2.COLOR_BGR2HSV) return hsv_image
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def size(input, name=None, out_type=dtypes.int32): # pylint: disable=redefined-builtin """Returns the size of a tensor. Returns a 0-D `Tensor` representing the number of elements in `input` of type `out_type`. Defaults to tf.int32. For example: ```python t = tf.constant([[[1, 1, 1], [2, 2, 2]], [[3, 3,...
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def find_part(part_id): """ This function is defined as an abstraction barrier, in case we want to use a different storage object for BoM, such as perhaps a read/write database. :part_id: the ID of the part specified :return: part object specified by part_id, else None if DNE """ return...
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import random def Transform(depth_image: np.array, ir_image: np.array, boxes: np.array, labels: np.array, train: bool): """ Apply transformation. :param depth_image: np.array(uint16), Depth image :param ir_image: np.array(uint16), IR image :param boxes: np.array(np.float), a list of N boxes of th...
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def FormatScoreTimes(score_times): """Provide a color-coded formatting of the output of ScoreLogFile.""" ok = '\033[94m' warn = '\033[93m' fail = '\033[91m' result = [] for name, score_time in score_times.iteritems(): if score_time < 0.2: color = ok elif score_time < 2.0: color = warn ...
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def isWithin(rect1, rect2): """Checks whether rectangle 1 is within rectangle 2 Parameters: rect1: list of coordinates [minx, maxy, maxx, miny] rect2: list of coordinates [minx, maxy, maxx, miny] Returns: True if rect1 within rect2 else False """ minx1, maxy1,maxx1, miny1 = r...
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import numpy import itertools import six from operator import concat def n_step_lstm( n_layers, dropout_ratio, hx, cx, ws, bs, xs, train=True, use_cudnn=True): """Stacked Long Short-Term Memory function for sequence inputs. This function calculates stacked LSTM with sequences. This function g...
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def login_post(): """Obdelaj izpolnjeno formo za prijavo""" # Uporabniško ime, ki ga je uporabnik vpisal v formo username = request.forms.username # Izračunamo MD5 has gesla, ki ga bomo spravili password = password_md5(request.forms.password) # Preverimo, ali se je uporabnik pravilno prijavil ...
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def doolittle(matrix_a): """ Doolittle's Method for LU-factorization. :param matrix_a: Input matrix (must be a square matrix) :type matrix_a: list, tuple :return: a tuple containing matrices (L,U) :rtype: tuple """ # Initialize L and U matrices matrix_u = [[0.0 for _ in range(len(matrix...
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def is_form_submitted(): """ Check if current method is PUT or POST """ return request and request.method in ("PUT", "POST")
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import random def randFunc(): """ Rand # generating func :return: int """ return random.randint(1,3)
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def hilbert(w): """ Take the Hilbert transform of some function to get the analytic signal :type w: np.array :param w: signal data, must be real """ return np.imag(analytic(w))
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def get_model_list(): """Get the entire list of model names in model_zoo. Returns ------- list of str Entire list of model names in model_zoo. """ return _models.keys()
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def get_delay_queue_max_size(): """Returns max allowed number of "waiting" messages in the delay queue. :return: Positive integer number or None if infinite :rtype: int """ if 'replica' not in settings.CQRS: return None return settings.CQRS['replica']['delay_queue_max_size']
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def getRequest(request): """ Get an openid request from the session, if any. """ return request.session.get('openid_request')
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from typing import Tuple def make_networks( spec: specs.EnvironmentSpec, hidden_layer_sizes: Tuple[int, ...] = (256, 256)) -> ValueDiceNetworks: """Creates networks used by the agent.""" num_dimensions = np.prod(spec.actions.shape, dtype=int) def _actor_fn(obs): network = hk.Sequential([ h...
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def pad_to_longest(vals: AnyList) -> StringList: """Pad all strings to length of longest in list Arguments: strs {StringList} -- string list Returns: StringList -- list of strings """ strs = [str(x) for x in vals] pad_len = max([len(x) for x in strs]) pad_str = ' ' * pad_le...
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def histogram_widget(value, title=None, description=None, footer=None, read_only=False, buckets=20, weight=1): """Helper function for quickly creating a histogram widget. Histogram widgets display the distribution of a numeric attribute, in buckets, to group ranges of values in your da...
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def generate_process_tag(slug): """Generate test tag for a given process.""" return '{}.{}'.format(TAG_PROCESS, slug)
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def artificialNeuralNetwork(obj, weights): """ obj is a list of values (like [0.5, 6.0, 0]. Keep away from inf and nan and stuff). weights is a vector where the first element is the number of hidden layers. (Call it N) Then there should follow N integers that show how many n...
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def run(adj_list, node_mappings, games=50): """ Function: run ------------- Runs the simulation on a graph with the given node mappings. adj_list: A dictionary representation of the graph adjacencies. node_mappings: A dictionary where the key is a name and the value is a array list of seed...
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def filter_staged(position_name, position_annotations, timepoint_annotations): """Filter-function for filter_annotations() to return worms that have been stage-annotated fully and are noted as "dead".""" stages = [tp.get('stage') for tp in timepoint_annotations.values()] # NB: all(stages) below is True ...
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def feature_importance_mad(clf, alpha=0.05, ignored_percentile=None): """This function fetches the feature importance values and runs a criteria using the median absolute deviation. If a feature importance difference to the median importance is greater t...
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import math def parse_sizes(raw: dict) -> dict: """Pass.""" parsed = {} parsed["disk_free_mb"] = math.floor(raw["disk_free"] / 1024 / 1024) parsed["disk_used_mb"] = math.ceil(raw["disk_used"] / 1024 / 1024) parsed["historical_sizes_devices"] = raw["entity_sizes"].get("Devices", {}) parsed["his...
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def associated_polynomials(cos_theta, sin_theta, max_n, max_m, k=None): """ Specific legendre legrende_polynomials for application in geomagnetic calculation Recursion Constants (k) can be pre-calculated to improve performance, otherwise the function will perform this for you """ if k is None: ...
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def cov(x, y, pi): """Covariance of two discretized random variables with supports x and y common probability mass function pi.""" return np.sum(pi * (x - mean(x, pi)) * (y - mean(y, pi)))
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def color_validator(input_str): """ A filter allowing only the particular colors used by the Google Calendar API Raises ValidationError otherwise. """ try: assert input_str in VALID_OVERRIDE_COLORS + [''] return input_str except AssertionError: raise ValidationError(...
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def getError(cur_pose, prev_pose, cur_gt, prev_gt): """ Computes the error of the transformation between 2 poses """ error_t = np.linalg.norm((prev_pose[:3, -1] - cur_pose[:3,-1]) - (cur_gt[:3,-1] - prev_gt[:3,-1])) gt_prev_qt = quaternion.from_rotation_matrix(prev_gt[:3, :3]) gt_qt = quaternion.from_rot...
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def Oxygen(): """Create a `PureFluid` object using the equation of state for oxygen.""" return PureFluid('liquidvapor.xml','oxygen')
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from typing import List from typing import Tuple from typing import Iterator import itertools def find_best_worst_lists(sequence_of_lists: List[SpreadingRatio]) -> BestAndWorstLists: """ This function finds the "best" and "worst" lists from a set of lists. See explanation below. :param sequence_of_lists: ...
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def computeSumAbsPerPolarity(jz, jz_err, bz, bz_err, conf_disambig, bitmap, nx, ny, rsun_ref, rsun_obs, cdelt1_arcsec, munaught): """function: computeSumAbsPerPolarity This function computes the sum of the absolute value of the current per polarity. It is defined as follows: The sum of the absolute value...
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def clang_describe_function(func): """Describe the function at the given clang AST node.""" assert func.kind == CursorKind.FUNCTION_DECL sig, defaults = clang_describe_args(func) signatures = {sig: {'return': clang_describe_type(func.result_type, func.location), 'defaults': defau...
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import hashlib def password_hash(password, password_salt=None): """Hashes a specified password""" password_salt = password_salt or oz.settings["session_salt"] salted_password = password_salt + password return "sha256!%s" % hashlib.sha256(salted_password.encode("utf-8")).hexdigest()
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def allowed_file(filename): """Determine if a file has an allowed extension.""" return '.' in filename and \ filename.rsplit('.', 1)[1] in app.config['ALLOWED_EXTENSIONS']
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