content stringlengths 35 762k | sha1 stringlengths 40 40 | id int64 0 3.66M |
|---|---|---|
import os
import json
def read_config():
"""Read configuration file."""
config_file = os.getenv('CONFIG_FILE_PATH')
if not config_file:
config_file = os.path.join(
os.path.dirname(os.path.realpath(__file__)), 'config.json')
with open(config_file) as file:
return json.load(f... | 3df2d5d081e9a6f8326d4d85e0ab4405dd37d461 | 22,800 |
def sendSingleCommand(server, user, password, command):
"""Wrapper function to open a connection and execute a single command.
Args:
server (str): The IP address of the server to connect to.
username (str): The username to be used in the connection.
password (str): The password asso... | 78a339b2bcb320ad81e79b8656867b894be22ecd | 22,801 |
def test_piecewise_fermidirac(precision):
"""Creates a Chebyshev approximation of the Fermi-Dirac distribution within
the interval (-3, 3), and tests its accuracy for scalars, matrices, and
distributed matrices.
"""
mu = 0.0
beta = 10.0
def f(x):
return 1 / (np.exp(beta * (x - mu)) + 1)
is_vectori... | 587b7acfc5a114677f1bf5ab5a72a9f2019c6063 | 22,802 |
def load_img(flist):
""" Loads images in a list of arrays
Args : list of files
Returns list of all the ndimage arrays """
rgb_imgs = []
for i in flist:
rgb_imgs.append(cv2.imread(i, -1)) # flag <0 to return img as is
print "\t> Batch import of N frames\t", len(rgb_imgs)
size_var = ... | 74d3c312e936f434b3738eae79b8f499755cdd0a | 22,803 |
import astropy.io.fits as pyfits
def makesimpleheader(headerin,naxis=2,radesys=None,equinox=None,pywcsdirect=False):
"""
Function to make a new 'simple header' from the WCS information in the input header.
Parameters
----------
headerin : astropy.io.fits.header
Header object
nax... | ffdc8f755227451e3df2329e8ec804b7444a553d | 22,804 |
def _callcatch(ui, func):
"""like scmutil.callcatch but handles more high-level exceptions about
config parsing and commands. besides, use handlecommandexception to handle
uncaught exceptions.
"""
detailed_exit_code = -1
try:
return scmutil.callcatch(ui, func)
except error.AmbiguousC... | 495531b930187f1d3aff329453235f9683bc25bc | 22,805 |
def _determ_estim_update(new_bit, counts):
"""Beliefs only a sequence of all ones or zeros.
"""
new_counts = counts[:]
new_counts[new_bit] += 1
if new_counts[0] > 0 and new_counts[1] > 0:
return LOG_ZERO
log_p_new = _determ_log_p(new_counts)
log_p_old = _determ_log_p(counts)
ret... | ea6f172161b215d5d474241da18fdd222692f245 | 22,806 |
def get_projects(config):
"""Find all XNAT projects and the list of scan sites uploaded to each one.
Args:
config (:obj:`datman.config.config`): The config for a study
Returns:
dict: A map of XNAT project names to the URL(s) of the server holding
that project.
"""
proje... | 09824b67e73f8190d777ec782454940f27b70e33 | 22,807 |
import json
def load_jsonrpc_method(name):
"""Load a method based on the file naming conventions for the JSON-RPC.
"""
base_path = (repo_root() / "doc" / "schemas").resolve()
req_file = base_path / f"{name.lower()}.request.json"
resp_file = base_path / f"{name.lower()}.schema.json"
request = C... | 173fdaad563989042f6ff3c5622c4b56be1a5fa5 | 22,808 |
def download_missing_namespace(network_id: int, namespace: str):
"""Output a namespace built from the missing names in the given namespace.
---
tags:
- network
parameters:
- name: network_id
in: path
description: The database network identifier
required: true
... | daca8a78454aec73bbf1e8a54f1a006aa748681c | 22,809 |
def client_decrypt_hello_reply(ciphertext, iv1, key1):
"""
Decrypt the server's reply using the IV and key we sent to it.
Returns iv2, key2, salt2 (8 bytes), and the original salt1.
The pair iv2/key2 are to be used in future communications.
Salt1 is returned to help confirm the integrity of the oper... | 70f3361acbeaa26376d4a54605a526ecac5ea61e | 22,810 |
import pandas
def load_labeled_data(filename):
""" Loads data from a csv, where the last column is the label of the data in that row
:param filename: name of the file to load
:return: data frames and labels in separate arrays
"""
dataframe = pandas.read_csv(filename, header=None)
dataset = dat... | 727691d376b744ccfdffbd62dd9f386e7bd7c4dd | 22,811 |
import logging
def get_logger(name, level='debug', log_file='log.txt'):
"""
Retrieve the logger for SWIFLow with coloredlogs installed in the
right format
"""
# Setup logging
log_level = level.upper()
level = logging.getLevelName(log_level)
# Add a custom format for logging
fmt = ... | bb990320b689faa7385952612afe44fc17ae4d7b | 22,812 |
import sh
import os
import errno
import shutil
def filesystem_move(
source_path,
source_type,
destination_path,
destination_type,
backup_ending,
):
"""
Moves a file from the source to the destination.
Arguments
---------
source_path: path to the source
... | 5d3cb03248f04dc93d086026a01d43cc1c3bdd9f | 22,813 |
def _get_data_tuple(sptoks, asp_termIn, label):
"""
Method obtained from Trusca et al. (2020), no original docstring provided.
:param sptoks:
:param asp_termIn:
:param label:
:return:
"""
# Find the ids of aspect term.
aspect_is = []
asp_term = ' '.join(sp for sp in asp_termIn).... | 2dae699ba4da27f6a36b7aac21cc8bc759a71d67 | 22,814 |
from pathlib import Path
def setup_environment(new_region: Path) -> bool:
"""Try to create new_region folder"""
if new_region.exists():
print(f"{new_region.resolve()} exists, this may cause problems")
proceed = input("Do you want to proceed regardless? [y/N] ")
sep()
return pro... | 175e21b10aca860d9886841be743d8f2a240dfc6 | 22,815 |
def is_favorable_halide_environment(
i_seq,
contacts,
pdb_atoms,
sites_frac,
connectivity,
unit_cell,
params,
assume_hydrogens_all_missing=Auto):
"""
Detects if an atom's site exists in a favorable environment for a halide
ion. This includes coordinating by a positively charged sid... | dc09952a022c0bf8d946773db0487293da88c4a5 | 22,816 |
def headers():
"""Default headers for making requests."""
return {
'content-type': 'application/json',
'accept': 'application/json',
} | 53e42df6cae8ba9cbdc5f0e0a86a0154d3ba360e | 22,817 |
def merge_two_lists(l1: ListNode, l2: ListNode) -> ListNode:
"""Returns a single sorted, in-place merged linked list of two sorted input linked lists
The linked list is made by splicing together the nodes of l1 and l2
Args:
l1:
l2:
Examples:
>>> l1 = linked_list.convert_list_t... | 49033ef17e0940a201c70555cc0e49b8e745fb3b | 22,818 |
import csv
def map_SOPR_to_firm():
"""
Map SOPR identifiers to a lobbying CUID.
Return a dictionnary.
"""
firms = {}
with open(DATASET_PATH_TO['LOBBYING_FIRMS'], 'rb') as f:
reader = csv.reader(f, delimiter='%', quoting=csv.QUOTE_NONE)
for record in reader:
SOPR_reports =... | e0f00d7f720512eef3e32685bb8ba5ed4ed0203c | 22,819 |
from typing import Set
def specialbefores_given_external_square(
befores: Set[Before],
directly_playable_squares: Set[Square],
external_directly_playable_square: Square) -> Set[Specialbefore]:
"""
Args:
befores (Set[Before]): a set of Befores used to create Specialbefores.
... | bb0405cc783ee94130893d0dca0f0b06e43d71c5 | 22,820 |
import os
from typing import Tuple
def load_sets(path: WindowsPath = project_dir / 'data/processed') -> \
Tuple[pd.DataFrame,
pd.DataFrame,
pd.Series,
pd.Series]:
"""
:param path:
:return:
"""
X_train = pd.read_csv(os.path.join(path, "X_train.c... | 31afd27131579d2d14e9bf8e2ddbd81db4825c72 | 22,821 |
import pytest
def check_if_all_tests_pass(option='-x'):
"""Runs all of the tests and only returns True if all tests pass.
The -x option is the default, and -x will tell pytest to exit on the first encountered failure.
The -s option prints out stdout from the tests (normally hidden.)"""
options =... | 81e41cb985bcf346d9351d327d0ca0941ed7320e | 22,822 |
import http
def init(api, _cors, impl):
"""Configures REST handlers for allocation resource."""
namespace = webutils.namespace(
api, __name__, 'Local nodeinfo redirect API.'
)
@namespace.route('/<hostname>/<path:path>')
class _NodeRedirect(restplus.Resource):
"""Redirects to loca... | 77430c891ceac87bec3d8b1cfa46557fbc1fd9f5 | 22,823 |
def split_matrix_2(input1):
"""
Split matrix.
Args:
inputs:tvm.Tensor of type float32.
Returns:
akg.tvm.Tensor of type float32 with 3d shape.
"""
dim = input1.shape[0]
split_num = dim // split_dim
result_3 = allocate((split_num, split_dim, split_dim), input1.dtype, 'loc... | 8ee5b4069c28166ef6181cb8c6ef1e21232239a4 | 22,824 |
import glob
def load_all(path, jobmanager=None):
"""Load all jobs from *path*.
This function works as a multiple execution of |load_job|. It searches for ``.dill`` files inside the directory given by *path*, yet not directly in it, but one level deeper. In other words, all files matching ``path/*/*.dill`` ar... | f76e2baeaa0b35283eed4748d68403827bdaff97 | 22,825 |
import numpy
def relative_error(estimate, exact):
"""
Compute the relative error of an estimate, in percent.
"""
tol = 1e-15
if numpy.abs(exact) < tol:
if numpy.abs(estimate - exact) < tol:
relative_error = 0.0
else:
relative_error = numpy.inf
else:
... | 4170fd4a7c448eb312ea9f42d436d12acd828695 | 22,826 |
import os
def extract_sample_paths(seq_dir):
""" Obtain the sample paths.
Parameters
----------
seq_dir : str
Input directory containing all of the sample files.
Returns
-------
dict of list of str
Samples with a list of their forward and reverse files.
"""
fps = os... | 8e02cec67a6c836bb08d31f47c9513af5fae6114 | 22,827 |
def list_users(cursor):
"""
Returns the current roles
"""
cursor.execute(
"""
SELECT
r.rolname AS name,
r.rolcanlogin AS login,
ARRAY(
SELECT b.rolname
FROM pg_catalog.pg_auth_members m
JOIN pg_catalog.pg_roles b ON (m.roleid = b.oid)
W... | b51efbae5da08089987e3bc2753e1da3c13ee365 | 22,828 |
import subprocess
def getVelocityRange(vis, options={}):
"""
Parse the velocity range from uvlist.
Useful when resampling and re-binning data in `line` selections
Returns a tuple of the form (starting velocity, end velocity)
"""
options['vis'] = vis
options['options'] = 'spec'
specdata = uvlist(options, std... | 268a2228f45f05b364b8173ec0ee4b2571ae068f | 22,829 |
def get_job_exe_output_vol_name(job_exe):
"""Returns the container output volume name for the given job execution
:param job_exe: The job execution model (must not be queued) with related job and job_type fields
:type job_exe: :class:`job.models.JobExecution`
:returns: The container output volume name
... | c625b596f9ee819eb0c7afc9aed1328ecef0e206 | 22,830 |
def bytes2human(n, format='%(value).1f %(symbol)s', symbols='customary'):
"""
Convert n bytes into a human readable string based on format.
symbols can be either "customary", "customary_ext", "iec" or "iec_ext",
see: http://goo.gl/kTQMs
>>> bytes2human(0)
'0.0 B'
>>> bytes2human(0.9)
... | 21d3f52fe60a25a860c8350c20e0b43209802751 | 22,831 |
def check_if_free(driver, available, movie_hulu_url):
"""
Check if "Watch Movie" button is there
if not, it's likely available in a special package (Starz etc) or availabe for Rent on Hulu.
"""
is_free = False
if available:
driver.get(movie_hulu_url)
sleep(3)
watch_movie_button = driver.find_elements_... | e27d62538e5bf9c416bcaedb4b7c5c4706493ba0 | 22,832 |
def scatter_add(data, indices, updates, axis=0):
"""Update data by adding values in updates at positions defined by indices
Parameters
----------
data : relay.Expr
The input data to the operator.
indices : relay.Expr
The index locations to update.
updates : relay.Expr
... | 641d96562700553a2ed4a5c4df323d468bba1bd8 | 22,833 |
def generate_test_linked_list(size=5, singly=False):
"""
Generate node list for test case
:param size: size of linked list
:type size: int
:param singly: whether or not this linked list is singly
:type singly: bool
:return: value list and generated linked list
"""
assert size >= 1
... | 5d6d5fc3c6027cc18fd6da24a7cefc506e64eb2a | 22,834 |
def _bytes_to_long(bytestring, byteorder):
"""Convert a bytestring to a long
For use in python version prior to 3.2
"""
result = []
if byteorder == 'little':
result = (v << i * 8 for (i, v) in enumerate(bytestring))
else:
result = (v << i * 8 for (i, v) in enumerate(reversed(byt... | fcaa038b21aef2822ad7a513c28a7a2ed3c08cbc | 22,835 |
import os
def process_manifest_for_key(manifest, manifest_key, installinfo,
parentcatalogs=None):
"""Processes keys in manifests to build the lists of items to install and
remove.
Can be recursive if manifests include other manifests.
Probably doesn't handle circular mani... | 1bb5386f35c9197963a4640203965aa79fa7e221 | 22,836 |
import contextlib
import ast
def SoS_exec(script: str, _dict: dict = None, return_result: bool = True) -> None:
"""Execute a statement."""
if _dict is None:
_dict = env.sos_dict.dict()
if not return_result:
if env.verbosity == 0:
with contextlib.redirect_stdout(None):
... | c524aa064dfc396d421cdef9962d81ca79c7010b | 22,837 |
def aten_dim(mapper, graph, node):
""" 构造获取维度的PaddleLayer。
TorchScript示例:
%106 : int = aten::dim(%101)
参数含义:
%106 (int): 输出，Tensor的维度。
%101 (Tensor): 输入的Tensor。
"""
scope_name = mapper.normalize_scope_name(node)
output_name = mapper._get_outputs_name(node)[0]
lay... | 8037cc1943577aed2737aceee47b97b59c6a9244 | 22,838 |
import numpy
def calcBlockingMatrix(vs , NC = 1 ):
"""Calculate the blocking matrix for a distortionless beamformer,
and return its Hermitian transpose."""
vsize = len(vs)
bsize = vsize - NC
blockMat = numpy.zeros((vsize,bsize), numpy.complex)
# Calculate the perpendicular projection op... | a46955771ba729a22fe18959ca6f9ac82af031b3 | 22,839 |
def plot_LA(mobile, ref, GDT_TS, GDT_HA, GDT_ndx,
sel1="protein and name CA", sel2="protein and name CA",
cmap="GDT_HA", **kwargs):
"""
Create LocalAccuracy Plot (heatmap) with
- xdata = residue ID
- ydata = frame number
- color = color-coded pair distance
.. Note... | 8103dbeb9801b08125ebb5e26cb5f76c948262ec | 22,840 |
import os
import pickle
def calculate_psfs(output_prefix):
"""Tune a family of comparable line-STED vs. point-STED psfs.
"""
comparison_filename = os.path.join(output_prefix, 'psf_comparisons.pkl')
if os.path.exists(comparison_filename):
print("Loading saved PSF comparisons...")
compar... | 0608ceee2089d692268d422acc0c16270aaa733f | 22,841 |
def simulateGVecs(pd, detector_params, grain_params,
ome_range=[(-np.pi, np.pi), ],
ome_period=(-np.pi, np.pi),
eta_range=[(-np.pi, np.pi), ],
panel_dims=[(-204.8, -204.8), (204.8, 204.8)],
pixel_pitch=(0.2, 0.2),
... | bdff9dc1b7fd15d7b3b1cf45a4364dc495790293 | 22,842 |
import logging
def get_logger(name: str):
"""Get logger call.
Args:
name (str): Module name
Returns:
Logger: Return Logger object
"""
logger = logging.getLogger(name)
logger.setLevel(logging.INFO)
logger.addHandler(get_file_handler())
logger.addHandler(get_stream_hand... | 6d661896d38e2227b6825e649bdbd719dd64670a | 22,843 |
def create_label_colormap(dataset=_PASCAL):
"""Creates a label colormap for the specified dataset.
Args:
dataset: The colormap used in the dataset.
Returns:
A numpy array of the dataset colormap.
Raises:
ValueError: If the dataset is not supported.
"""
if dataset == _PASCAL:
return create... | 683d52f3f2c476b0e39e41ae7f2a0f897fee60d3 | 22,844 |
def SDM_lune(params, dvals, title=None, label_prefix='ham='):
"""Exact calculation for SDM circle intersection. For some reason mine is a slight upper bound on the results found in the book. Uses a proof from Appendix B of the SDM book (Kanerva, 1988). Difference is neglible when norm=True."""
res = expected_i... | e1465e002632ceb1431fa1a668abfdaa7deb307b | 22,845 |
def font_match(obj):
"""
Matches the given input againts the available
font type matchers.
Args:
obj: path to file, bytes or bytearray.
Returns:
Type instance if matches. Otherwise None.
Raises:
TypeError: if obj is not a supported type.
"""
return match(obj, f... | 8cf99e626578d278b3ce9e598233cb6dfa407820 | 22,846 |
def process_image(debug=False):
"""Processes an image by:
-> sending the file to Vision Azure api
-> returns a dictionary containing the caption
and confidence level associated with that image
TODO implement
"""
# get the json data
json_data = response.json()
if json_... | 6931d523223c960721c37bffd47d89f2daeba7f6 | 22,847 |
import six
def time_monotonically_increases(func_or_granularity):
"""
Decorate a unittest method with this function to cause the value
of :func:`time.time` and :func:`time.gmtime` to monotonically
increase by one each time it is called. This ensures things like
last modified dates always increase.... | f3f76502cf0cd5f402cb4f585d6cd06db8eb5851 | 22,848 |
def rotate_coordinates(coords: np.ndarray, axis_coords: np.ndarray) -> np.ndarray:
"""
Given a set of coordinates, `coords`, and the eigenvectors of the principal
moments of inertia tensor, use the scipy `Rotation` class to rotate the
coordinates into the principal axis frame.
Parameters
------... | 686657f464fdf846fa394128ad1f8be6d00adf06 | 22,849 |
from typing import Type
from typing import Any
def get_maggy_ddp_wrapper(module: Type[TorchModule]):
"""Factory function for MaggyDDPModuleWrapper.
:param module: PyTorch module passed by the user.
"""
class MaggyDDPModuleWrapper(TorchDistributedDataParallel):
"""Wrapper around PyTorch's DDP... | 53f7e5096c41221072d7584470dd8a1bcf32a04f | 22,850 |
def random_jitter(cv_img, saturation_range, brightness_range, contrast_range):
"""
图像亮度、饱和度、对比度调节，在调整范围内随机获得调节比例，并随机顺序叠加三种效果
Args:
cv_img(numpy.ndarray): 输入图像
saturation_range(float): 饱和对调节范围，0-1
brightness_range(float): 亮度调节范围，0-1
contrast_range(float): 对比度调节范围，0-1
Retur... | f7ff6d2e0bbe1656abe5ad1dca404e1903417166 | 22,851 |
from typing import Union
def render_orchestrator_inputs() -> Union[Driver, None]:
""" Renders input form for collecting orchestrator-related connection
metadata, and assembles a Synergos Driver object for subsequent use.
Returns:
Connected Synergos Driver (Driver)
"""
with st.sidebar.... | d67f3a40347a2f247183e2b9092429ca118bc739 | 22,852 |
import logging
def json_cache_wrapper(func, intf, cache_file_ident):
"""
Wrapper for saving/restoring rpc-call results inside cache files.
"""
def json_call_wrapper(*args, **kwargs):
cache_file = intf.config.cache_dir + '/insight_dash_' + cache_file_ident + '.json'
try: # looking int... | 176c6f5a7b14dc2389592c415ffa9e122ebcd794 | 22,853 |
def type_assert_dict(
d,
kcls=None,
vcls=None,
allow_none: bool=False,
cast_from=None,
cast_to=None,
dynamic=None,
objcls=None,
ctor=None,
desc: str=None,
false_to_none: bool=False,
check=None,
):
""" Checks that every key/value in @d is an instance of @kcls: @vcls
... | 8a5590a86a0f2e1b4dbef5218c4a294dde3675e1 | 22,854 |
def get_missing_ids(raw, results):
"""
Compare cached results with overall expected IDs, return missing ones.
Returns a set.
"""
all_ids = set(raw.keys())
cached_ids = set(results.keys())
print("There are {0} IDs in the dataset, we already have {1}. {2} are missing.".format(len(all_ids), len... | cb380c12f26de8b4d3908964f4314bc7efe43056 | 22,855 |
import collections
def _spaghettinet_edgetpu_s():
"""Architecture definition for SpaghettiNet-EdgeTPU-S."""
nodes = collections.OrderedDict()
outputs = ['c0n1', 'c0n2', 'c0n3', 'c0n4', 'c0n5']
nodes['s0'] = SpaghettiStemNode(kernel_size=5, num_filters=24)
nodes['n0'] = SpaghettiNode(
num_filters=48,
... | 93b98a29654f8a838f39d6bfa59f78719ff6c42c | 22,856 |
def instance_of(type):
"""
A validator that raises a :exc:`TypeError` if the initializer is called
with a wrong type for this particular attribute (checks are perfomed using
:func:`isinstance` therefore it's also valid to pass a tuple of types).
:param type: The type to check for.
:type type: t... | 2d41d457e9f7e60fa5e5d77f83454ca75dc112f7 | 22,857 |
import subprocess
import os
def execute_command(command):
"""
execute command
"""
output = subprocess.PIPE
flag = 0
# for background execution
if("nohup" in command) or ("\&" in command):
output = open('result.log', 'w')
flag = 1
child = subprocess.Popen(command.split()... | a5f80a2fc0c9adc4f8f01eab26d1466aa4b0b438 | 22,858 |
def ass(stream: Stream, *args, **kwargs) -> FilterableStream:
"""https://ffmpeg.org/ffmpeg-filters.html#ass"""
return filter(stream, ass.__name__, *args, **kwargs) | 7f9d88fe1fdeb2337acce25e8b40db94d59f8748 | 22,859 |
def resultcallback(group):
"""Compatibility layer for Click 7 and 8."""
if hasattr(group, "result_callback") and group.result_callback is not None:
decorator = group.result_callback()
else:
# Click < 8.0
decorator = group.resultcallback()
return decorator | 1eb938400c90667eb532366f5ca83d02dd6429e1 | 22,860 |
from licensedcode import cache
def get_license_matches(location=None, query_string=None):
"""
Return a sequence of LicenseMatch objects.
"""
if not query_string:
return []
idx = cache.get_index()
return idx.match(location=location, query_string=query_string) | 5d2891d36dd10e6c4d1c24280df86d1bf39e464a | 22,861 |
def compute_corrector_prf(results, logger, on_detected=True):
"""
References:
https://github.com/sunnyqiny/
Confusionset-guided-Pointer-Networks-for-Chinese-Spelling-Check/blob/master/utils/evaluation_metrics.py
"""
TP = 0
FP = 0
FN = 0
all_predict_true_index = []
all_gol... | 1f86b5f7cd91aba9a50007493d83cd3480eb9e20 | 22,862 |
def nonzero_sign(x, name=None):
"""Returns the sign of x with sign(0) defined as 1 instead of 0."""
with tf.compat.v1.name_scope(name, 'nonzero_sign', [x]):
x = tf.convert_to_tensor(value=x)
one = tf.ones_like(x)
return tf.compat.v1.where(tf.greater_equal(x, 0.0), one, -one) | 1955f37bece137537d53cde6681a8f56554cafea | 22,863 |
def tls_control_system_tdcops(tls_control_system):
"""Control system with time-dependent collapse operators"""
objectives, controls, _ = tls_control_system
c_op = [[0.1 * sigmap(), controls[0]]]
c_ops = [c_op]
H1 = objectives[0].H
H2 = objectives[1].H
objectives = [
krotov.Objective(... | b94f438291671e863bb759ce024a0e42e6230481 | 22,864 |
def create_new_credential(site_name,account_name, account_password):
"""Function to create a new account and its credentials"""
new_credential = Credentials(site_name,account_name, account_password)
return new_credential | 127335a31054d1b89521a1bc8b354ad51e193be6 | 22,865 |
import os
def create_inception_graph():
""""Creates a graph from saved GraphDef file and returns a Graph object.
Returns:
Graph holding the trained Inception network, and various tensors we'll be
manipulating.
"""
with tf.Session() as sess:
model_filename = os.path.join(
... | 69fc47bdceca23e530c21d6beb0e53b4adc24a3a | 22,866 |
from typing import Dict
def prepare_request_params(
request_params: Dict, model_id: Text, model_data: Dict
) -> Dict:
""" reverse hash names and correct types of input params """
request_params = correct_types(request_params, model_data["columns_data"])
if model_data["hashed_indexes"]:
request... | c7aee17db83e96cb3bcf6ce75ea650414035654a | 22,867 |
import pandas as pd
import os
def help_full(path):
"""Health Evaluation and Linkage to Primary Care
The HELP study was a clinical trial for adult inpatients recruited from
a detoxification unit. Patients with no primary care physician were
randomized to receive a multidisciplinary assessment and a brief
mo... | ec84932a5fb6cceeb86530145bd136890ed60568 | 22,868 |
from typing import List
def get_all_listening_ports() -> List[int]:
"""
Returns all tcp port numbers in LISTEN state (on any address).
Reads port state from /proc/net/tcp.
"""
res = []
with open('/proc/net/tcp', 'r') as file:
try:
next(file)
for line in file:
... | cfc1b4b93358954ad802ce3727bd9d424ef9d136 | 22,869 |
async def mock_race_result() -> dict:
"""Create a mock race-result object."""
return {
"id": "race_result_1",
"race_id": "190e70d5-0933-4af0-bb53-1d705ba7eb95",
"timing_point": "Finish",
"no_of_contestants": 2,
"ranking_sequence": ["time_event_1", "time_event_2"],
... | 33a2889bcb2665642a3e5743128a478bb103a82b | 22,870 |
import re
import binascii
def qr_to_install_code(qr_code: str) -> tuple[zigpy.types.EUI64, bytes]:
"""Try to parse the QR code.
if successful, return a tuple of a EUI64 address and install code.
"""
for code_pattern in QR_CODES:
match = re.search(code_pattern, qr_code, re.VERBOSE)
if... | 91ec3f90385e95b94c47c338f56b26315ff12e99 | 22,871 |
def vwr(scene, analyzer, test_number, workbook=None, sheet_format=None, agg_dict=None):
"""
Calculates Variability Weighted Return (VWR).
:param workbook: Excel workbook to be saved to disk.
:param analyzer: Backtest analyzer.
:param sheet_format: Dictionary holding formatting information such as co... | 7fa8c9794e443be91d0cf246c209dfdc86e19f54 | 22,872 |
def dec2hms(dec):
"""
ADW: This should really be replaced by astropy
"""
DEGREE = 360.
HOUR = 24.
MINUTE = 60.
SECOND = 3600.
dec = float(dec)
fhour = dec*(HOUR/DEGREE)
hour = int(fhour)
fminute = (fhour - hour)*MINUTE
minute = int(fminute)
second = (fminut... | 4c2c564631d431d908f66486af40e380598f2724 | 22,873 |
def logfpsd(data, rate, window, noverlap, fmin, bins_per_octave):
"""Computes ordinary linear-frequency power spectral density, then multiplies by a matrix
that converts to log-frequency space.
Returns the log-frequency PSD, the centers of the frequency bins,
and the time points.
Adapted from Matlab... | cf9a9ee3a248760e6bfa36a82ae782d607269b10 | 22,874 |
def ppg_dual_double_frequency_template(width):
"""
EXPOSE
Generate a PPG template by using 2 sine waveforms.
The first waveform double the second waveform frequency
:param width: the sample size of the generated waveform
:return: a 1-D numpy array of PPG waveform
having diastolic peak at the... | 9c04afb7687e19a96fb84bf1d5367dc79ce6ceea | 22,875 |
import os
import fnmatch
def _run_fast_scandir(dir, fn_glob):
"""
Quickly scan nested directories to get a list of filenames that match the fn_glob string.
Modified from https://stackoverflow.com/a/59803793/2441026
(faster than os.walk or glob methods, and allows filename matching in subdirectories).
... | 79f95bb312663c7870ec71cc93a0b6000c08ebdd | 22,876 |
def str_input(prompt: str) -> str:
"""Prompt user for string value.
Args:
prompt (str): Prompt to display.
Returns:
str: User string response.
"""
return input(f"{prompt} ") | ac6c3c694adf227fcc1418574d4875d7fa637541 | 22,877 |
def action(ra_deg, dec_deg, d_kpc, pm_ra_masyr, pm_dec_masyr, v_los_kms,
verbose=False):
"""
parameters:
----------
ra_deg: (float)
RA in degrees.
dec_deg: (float)
Dec in degress.
d_kpc: (float)
Distance in kpc.
pm_ra_masyr: (float)
RA proper motion... | 0e707bff67cee3c909213f14181927a14d5d5656 | 22,878 |
def getProcWithParent(host,targetParentPID,procname):
""" returns (parentPID,procPID) tuple for the procname with the specified parent """
cmdStr="ps -ef | grep '%s' | grep -v grep" % (procname)
cmd=Command("ps",cmdStr,ctxt=REMOTE,remoteHost=host)
cmd.run(validateAfter=True)
sout=cmd.get_re... | 77f4f13eb381dc840eee26875724cd6e1cdf1e57 | 22,879 |
def temporal_autocorrelation(array):
"""Computes temporal autocorrelation of array."""
dt = array['time'][1] - array['time'][0]
length = array.sizes['time']
subsample = max(1, int(1. / dt))
def _autocorrelation(array):
def _corr(x, d):
del x
arr1 = jnp.roll(array, d, 0)
ans = arr1 * ar... | 69640da51fa94edd92e793f2c86ac34090e70a28 | 22,880 |
import json
def kv_detail(request, kv_class, kv_pk):
"""
GET to:
/core/keyvalue/api/<kv_class>/<kv_pk>/detail/
Returns a single KV instance.
"""
Klass = resolve_class(kv_class)
KVKlass = Klass.keyvalue_set.related.model
try:
kv = KVKlass.objects.get(pk=kv_pk)
except KVKlas... | bd8961c25e39f8540b57753b8f923229e77ae795 | 22,881 |
from typing import Protocol
import json
def opentrons_protocol(protocol_id):
"""Get OpenTrons representation of a protocol."""
current_protocol = Protocol.query.filter_by(id=protocol_id).first()
if not current_protocol:
flash('No such specification!', 'danger')
return redirect('.')
i... | 3a8cc4355763f788f01bb1d95aa43f5cb249a68f | 22,882 |
import os
def get_link_external():
""" Return True if we should link to system BLAS / LAPACK
If True, attempt to link to system BLAS / LAPACK. Otherwise, compile
lapack_lite, and link to that.
First check ``setup.cfg`` file for section ``[lapack]`` key ``external``.
If this value undefined, th... | 2a6c867bf3cebf7966951f19f9beddddd22f0fad | 22,883 |
def flag(request, comment_id, next=None):
"""
Flags a comment. Confirmation on GET, action on POST.
Templates: `comments/flag.html`,
Context:
comment
the flagged `comments.comment` object
"""
comment = get_object_or_404(comments.get_model(), pk=comment_id, site__pk=settings.... | e0997313c13446150ed3a0f402b2df74089aa4e9 | 22,884 |
from typing import List
def get_nodes_for_homek8s_group(inventory, group_name) -> List[str]:
"""Return the nodes' names of the given group from the inventory as a list."""
hosts_dict = inventory['all']['children']['homek8s']['children'][group_name]['hosts']
if hosts_dict:
return list(hosts_dict.keys())
el... | 806394259816ec4311e69dcd46e7b111c7ca0652 | 22,885 |
def is_blank_or_none(value: str):
"""
Returns True if the specified string is whitespace, empty or None.
:param value: the string to check
:return: True if the specified string is whitespace, empty or None
"""
try:
return "".__eq__(value.strip())
except AttributeError:
retur... | 062e1ab33fc5043435af9e97cdf2443ffc4625bd | 22,886 |
import typing
def __get_play_widget(function: typing.Any) -> typing.Any:
"""Generate play widget.
:param function: Function to associate with Play.
:return: Play widget.
"""
play = widgets.interactive(
function,
i=widgets.Play(
value=0,
min=0,
m... | 5bb63256f84f1c6f50e2ae007a08e6e794535bc5 | 22,887 |
def add_data_to_profile(id, profile_id, read_only, tree_identifier, folder_path=None, web_session=None):
"""Shares data to user group
Args:
id (int): The id of the data
profile_id (int): The id of profile
read_only (int): The flag that specifies whether the data is read only
tre... | 489d246b90506b7581ee8aef66c7f5f2ba6b9b88 | 22,888 |
def get_activation_function(activation):
"""
Gets an activation function module given the name of the activation.
:param activation: The name of the activation function.
:return: The activation function module.
"""
if activation == 'ReLU':
return nn.ReLU()
elif activation == 'LeakyR... | ae5d8e91667e2dc4fe34eb1ac96cff329d542103 | 22,889 |
def get_value_from_time(a_node="", idx=0):
"""
gets the value from the time supplied.
:param a_node: MFn.kAnimCurve node.
:param idx: <int> the time index.
:return: <tuple> data.
"""
return OpenMaya.MTime(a_node.time(idx).value(), OpenMaya.MTime.kSeconds).value(), a_node.value(idx), | 77c6cb47c4381df3537754dc66e03ef4366557de | 22,890 |
def getrinputs(rtyper, graph):
"""Return the list of reprs of the input arguments to the 'graph'."""
return [rtyper.bindingrepr(v) for v in graph.getargs()] | bb0f8861a29cd41af59432f267f07ff67601460c | 22,891 |
import os
def _apply_mask(head_file, mask_file, write_dir=None,
caching=False, terminal_output='allatonce'):
"""
Parameters
----------
head_file : str
Path to the image to mask.
mask_file : str
Path to the image mask to apply.
write_dir : str or None, optional... | fe2964ad62aa466f6ca92c0329e15ef80ca48460 | 22,892 |
def mars_reshape(x_i):
"""
Reshape (n_stacks, 3, 16, 112, 112) into (n_stacks * 16, 112, 112, 3)
"""
return np.transpose(x_i, (0, 2, 3, 4, 1)).reshape((-1, 112, 112, 3)) | d842d4d9b865feadf7c56e58e66d09c4a3389edf | 22,893 |
def Rz_to_coshucosv(R,z,delta=1.):
"""
NAME:
Rz_to_coshucosv
PURPOSE:
calculate prolate confocal cosh(u) and cos(v) coordinates from R,z, and delta
INPUT:
R - radius
z - height
delta= focus
OUTPUT:
(cosh(u),cos(v))
HISTORY:
2012-11-27 -... | f01ed002c09e488d89cfd4089343b16346dfb5fd | 22,894 |
import ast
import numpy
def rpFFNET_createdict(cf,ds,series):
""" Creates a dictionary in ds to hold information about the FFNET data used
to gap fill the tower data."""
# get the section of the control file containing the series
section = pfp_utils.get_cfsection(cf,series=series,mode="quiet")
... | 60646de63106895eeb716f763c49195b9c5459e8 | 22,895 |
def svn_client_relocate(*args):
"""
svn_client_relocate(char dir, char from_prefix, char to_prefix, svn_boolean_t recurse,
svn_client_ctx_t ctx, apr_pool_t pool) -> svn_error_t
"""
return _client.svn_client_relocate(*args) | 55e78e311d461e5a20e5cd04778e6c8431a6d990 | 22,896 |
def get_pairs(image1, image2, global_shift, current_objects, record, params):
""" Given two images, this function identifies the matching objects and
pairs them appropriately. See disparity function. """
nobj1 = np.max(image1)
nobj2 = np.max(image2)
if nobj1 == 0:
print('No echoes found in ... | 5013764c7e2a1d5e12abc2107ffdbfca640f1423 | 22,897 |
def getComparedVotes(request):
"""
* @api {get} /getComparedVotes/?people_same={people_same_ids}&parties_same={parties_same_ids}&people_different={people_different_ids}&parties_different={parties_different_ids} List all votes where selected MPs/PGs voted the same/differently
* @apiName getComparedVotes
... | e49b2e1b181761e56795868a3dd6ff5a0452cd05 | 22,898 |
def get_bits(register, index, length=1):
"""
Get selected bit(s) from register while masking out the rest.
Returns as boolean if length==1
:param register: Register value
:type register: int
:param index: Start index (from right)
:type index: int
:param length: Number of bits (default 1... | 0663d925c2c74ece359a430392881cf24b75a575 | 22,899 |
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