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from multi_mesh.components.plotter import create_projection def find_good_projection( name: str = "default", central_longitude: float = 0.0, central_latitude: float = 0.0, satellite_height: float = 10000000.0, lat_extent=(-90.0, 90.0), lon_extent=(-180.0, 180.0), ): """ Function which ...
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import torch def vectorize(ex, model): """Torchify a single example.""" word_dict = model.word_dict # Index words word_idx = [word_dict[w] for w in ex['sent']] if len(word_idx) == 0: print(ex) if model.args.model_type == 'cnn': pad = max(model.args.kernel_sizes) - 1 w...
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def edit_sub(request, proj='', srt1='', id1='', srt2='', id2=''): """Edit subitem - let op: theoretisch kan dit bij edit_item() in """ # try: # do we have form data? data = request.POST # except AttributeError: # data = {} obj1 = funcs.get_object(srt1, id1) # my.rectypes[srt1].objects....
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def main(output, effective_tld_filename): """ effective_tld_filename is the effective TLD file to parse. A C++ array of { domain, exception, wild } entries representing the eTLD file is then printed to output. """ def boolStr(b): if b: return "true" return "false" for etld in getEffectiveT...
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def byte_convert_(number, original, new, printed=False): """Convert from one suffix to another suffix.""" if original == '': if new == '': None elif new == 'kb': number = number/1_000 elif new == 'mb': number = number/1_000_000 elif new == 'gb'...
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def filter_none(data, split_by_client=False): """This function filters out ``None`` values from the given list (or list of lists, when ``split_by_client`` is enabled).""" if split_by_client: # filter out missing files and empty clients existing_data = [ [d for d in client_data if d ...
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from .main import main as main_blueprint import logging def create_app(options, config_name): """Create an application instance.""" app = Flask(__name__) # import configuration app.config.from_object(config[config_name]) config[config_name].init_app(app) #cfg = os.path.join(app_dir,...
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def cal_dist(weights, codes, keys_list=[-1, 0, 1]): """ Compute Distribution of CODES and generate results for PyPlot Args: weights (list): codes (list): keys_list (list): optional Returns: dist_dict (dict): a list of weights for each key """ dist_dict = dict.fromke...
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from typing import List def get_default_privileges(type: PgObjectType, owner: str) -> List[Privileges]: """Return a list of :class:`~pg_grant.types.Privileges` objects matching the default privileges for that type. This can be called when the ACL item from PostgreSQL is NULL to determine the implicit...
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def plot_contours(clf, xx, yy, **params): """Plot the inverese-transformed decision boundaries for a classifier. Parameters ---------- ax: matplotlib axes object clf: a classifier xx: meshgrid ndarray yy: meshgrid ndarray params: dictionary of params to pass to contourf, optional ""...
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def test_funding_reorg_remote_lags(node_factory, bitcoind): """Nodes may disagree about short_channel_id before channel announcement """ # may_reconnect so channeld will restart; bad gossip can happen due to reorg opts = {'funding-confirms': 1, 'may_reconnect': True, 'allow_bad_gossip': True} l1, l2...
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def print_num(n): """ there must be a package that does this better. oh well""" if n >= 1000000000: return "{}{}".format(round(float(n) / 1000000000, 2), "B") elif n >= 1000000: return "{}{}".format(round(float(n) / 1000000, 2), "M") elif n >= 1000: return "{}{}".format(round...
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def process_row(row): """Split a row into the original sentence, its corresponding summary and its rating. Args: row: a row in the MS dataset tsv file. Returns: current_original_sentence: the original sentence of the row current_shortened_sentences_list: a list of summaries corresponding to...
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def update_system(system): """ :param system: Dictionary with all the information of the system Dictionary system already has the indexes of the excited molecules 1. Looks for the neighbourhood of every centre. 2. Chooses a process for every exciton (KMC). This path variables include: dict(centre, p...
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def relu(Z): """Applies relu function to an array/value Arguments --------- Z: float/int/array_like Original Value Returns ------- A: same shape as input Value after applying relu function """ return np.maximum(Z, 0)
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import inspect def calculate_median(dataframe, *args, display=True, to_csv=False, to_html=False) -> DataFrame: """ This function calculates the median of all *numeric* columns within a Pandas dataframe. Alternately, users can specify a list of columns for which they would want to calculate the median. If ...
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def have_double_impl(math_name): """ Check whether we have an implementation of the math function in libc for type double (e.g. logf or logl may not be available, but log may be). """ return math_suffix(math_name, double) in libc_math_funcs
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def translate_name(name): """ 因为老数据的缘故,导致有些人名错了,需要翻译一下 :param name: 成员或组合名 :return: """ name_dict = { 'ruru_dambara': 'ruru_danbara', 'memi_tamura': 'meimi_tamura', 'chisaki_morito_m': 'chisaki_morito', 'musubu_funaki_a': 'musubu_funaki' } return name_dic...
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import argparse def parse_args(): """ Parse command line arguments """ parser = argparse.ArgumentParser( description="This program outputs axt alignments for cases comparing " "fastas for which the sequences of one file are completely and exactly " " contained in another. For example, our need for this came ...
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from typing import Union from typing import Iterable from datetime import datetime def query_unexpired_records(*, users: Union[User, Iterable[User]]=None, types: Union[RecordType, Iterable[RecordType]]=None ): """ :param users...
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def _pds_to_de(dict_values): """ takes all the pds fields values in dict (PDSxxxx) and creates list of DE strings :param dict_values: dict containing "PDSxxxx" elements :return: list of byte strings containing pds data, or None if no fields """ # get the PDS field keys in order keys = sorte...
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from bs4 import BeautifulSoup import re import logging def skip_team(soup: BeautifulSoup) -> bool: """Skip team if no players meet the minimum :param soup: BeautifulSoup object for a team :returns: True if the team should be skipped, False otherwise """ pattern = re.compile("No players meet the m...
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def _battin_second_equation(u, h1, h2): """Battin's second equation. Parameters ---------- u: float The dependent variable. h1: float The first of the h coefficients. h2: float The second of the h coefficients. Returns ------- y: float The dependent ...
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import argparse def get_arg_parser(): """Routine for parsing the flags Returns: arg_parser: the argument parser """ parser = argparse.ArgumentParser() parser.add_argument('-s', '--savepath', default=DEFAULT_SAVE_PATH, help="specify where to save the processed data") parser.add_arg...
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def compute_pca(data2d): """ Compute PCA using sklearn :param data2d: 2d array. PCA will be computed on non-zeros values. :return: coordsrc: 2d array: centered non-zero coordinates\ pca: object: PCA result.\ centermass: 2x1 array: 2d coordinates of the center of mass """ # round...
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def le(n, alpha, beta=0): """ Draw from the Levy-stable ensemble :param n: size of random matrix :param alpha: parameter controlling the asymptotic power law of the distribution tails, between 0 and 2 :param beta: skew of the distribution, between -1 and 1 :return: random n by n matrix, drawn f...
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def run_database_command(client, command): """ Run a database command using the "mysql -e" command :param client: String :param command: String database command :return: """ return mode.run_command( helper.get_command(client, 'mysql') + ' ' + generate_mysql_credentials( c...
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def get_kw_active(df): """ returns the df with only enabled keyword status """ return select_col_equals(df,'Keyword state','enabled')
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import urllib def _urlencode(items): """A Unicode-safe URLencoder.""" try: return urllib.urlencode(items) except UnicodeEncodeError: return urllib.urlencode([(k, smart_str(v)) for k, v in items])
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import os def escape(pathname): """Escape all special characters. """ # Escaping is done by wrapping any of "*?[" between square brackets. # Metacharacters do not work in the drive part and shouldn't be escaped. drive, pathname = os.path.splitdrive(pathname) if isinstance(pathname, bytes): ...
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def LLV(x: pd.Series, n: int): """ talib.MIN() """ LLV = [np.NAN] * (n - 1) for index in range(len(x)): if index < n - 1: continue else: window = x[index - n + 1:index + 1] LLV.append(min(window)) return pd.Series(LLV)
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from typing import List def find_max_consecutive_ones(numbers: List[int]) -> int: """https://leetcode.com/problems/max-consecutive-ones/""" current_sum, max_sum = 0, 0 for value in numbers: current_sum += value if not value: max_sum = max(max_sum, current_sum) curr...
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def _amplitudeFromPeak(peak, x, y, radius, x_0=10, y_0=10): """ This function can be used to estimate an Airy disc amplitude from the peak pixel, centroid and radius. """ rz = jn_zeros(1, 1)[0] / np.pi r = np.sqrt((x - x_0) ** 2 + (y - y_0) ** 2) / (radius / rz) if r == 0.: return peak ...
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def get_user(token): """Find user authenticated by token or return None.""" return USERS.get(token)
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import urllib import json from datetime import datetime def by_location_id(id): """ retrieve next appointment by location id """ raw = urllib.request.urlopen(SCHED_URL + str(id)).read() appt = json.loads(raw.decode('utf-8')) ts = None if len(appt) > 0: ts = datetime.datetime.strptime(a...
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def sieve(limit): """ Returns a list of prime numbers up to but not including the given number. """ array = [True] * limit array[0] = array[1] = False primes = [] for (number, prime) in enumerate(array): if prime: primes.append(number) ...
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async def async_setup_entry(hass: HomeAssistant, entry: ConfigEntry) -> bool: """Set up LoadShedding as config entry.""" suburb = Suburb( id=entry.data.get("suburb_id"), name=entry.data.get("suburb"), municipality=entry.data.get("municipality"), province=entry.data.get("province...
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from typing import List from typing import Tuple def key_exists(key: str, list_keys: List) -> Tuple[int, bool]: """ Finds a dict which has `key` defined from a list `list_keys` Args: key: the key to find list_keys: list of dicts Returns: index of key if found, whether the key...
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def combined_threshold_4(color_img, show_dbg=False): """Applies different methods to find the thresholds in the image.""" hls = cv2.cvtColor(color_img, cv2.COLOR_RGB2HLS) s_channel = hls[:, :, 2] gray = cv2.cvtColor(color_img, cv2.COLOR_RGB2GRAY) sobelx = cv2.Sobel(gray, cv2.CV_64F, 1, 0) # Take th...
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def mod_rand_invertible(p): """Return a random invertible element modulo p for p > 1""" assert p > 1 while True: a = randint(1, p - 1) # Check with the Euclidean algorithm if a is invertible a2, a1 = p, a while a1 > 0: a2, a1 = a1, a2 % a1 # Now a is in...
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def normed_duration(catalog): """ One-line description Full description Parameters ---------- Returns ------- Examples -------- """ return (catalog['T']/day_hrs)/(catalog['period'])**(1/3.0)
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def total_ordering_from_cmp(cls): """Class decorator that fills in missing ordering methods from __cmp__. This lets us take a class defined for Python 2's ordering system (using __cmp__) and use it with minimal changes -- just a decorator -- in Python 3. This implementation is adapted from the Python 2 versio...
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from typing import Any from typing import Optional from typing import Callable def unmarshal_dict( obj: dict, cls: Any, allow_extra_keys: bool=True, ctor: Optional[Callable]=None, ): """ Unmarshal @obj into @cls Args: obj: The dict to unmarshal into @cls cls: ...
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import os import logging import traceback def run(type_, input_, output, altitude=None, tres=300, tlim=None, tshift=0., zres=50, zlim=[0., 15000.], cloud_detection='default', cloud_base_detection='default', noise_removal='default', calibration='default', output_sampling=86400, overlap_file=None, calibrat...
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import sys def random_float() -> float: """Return a random float.""" return uniform(-sys.maxsize, sys.maxsize)
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import os def retrieve_buff_usages(simdirs, config): """ Retrieve all the buff usages simulation result from the dummy simulation directories. Parameters ---------- simdirs : list(str) The list of dummy simulation directories. Returns ------- dict The retrieved buff u...
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def make_label_df(labels, behavior_subj, psychometric_params): """Turns labels into a parsed df""" label_df = pd.DataFrame(data={"stim_id": labels}) morphs.data.parse.stim_id(label_df) label_df["behave_data"] = False for dim, dim_group in label_df.groupby("morph_dim"): if dim in psychometri...
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def dwolla_get_url(url): """ A helper method for the DwollaClient to retreive any url Args: url (str): the url to retreive Returns: response """ try: result = DwollaClient.instance().token.get(url) return result.body except Exception as e: logger.err...
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from typing import Optional from typing import List from typing import Tuple def cat1_gt_cat2( df: pd.DataFrame, cat1: str, cat2: str, drop_levels: Optional[List[str]] = None ) -> Tuple[bool, pd.MultiIndex]: """ Checks that values from subset where `category == cat1` are greater than the values from s...
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def extract_all(session_path, save=False, bpod_trials=False, settings=False): """Extract all datasets from habituationChoiceWorld Note: only the datasets from the HabituationTrials extractor will be saved to disc. :param session_path: The session path where the raw data are saved :param save: If True, ...
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def compute_norm_metrics(gradient): """Compute the metrics""" l1 = np.linalg.norm(gradient, ord=1) l2 = np.linalg.norm(gradient) Min = np.linalg.norm(gradient, ord=-np.inf) ## min(abs(x)) Max = np.linalg.norm(gradient, ord=np.inf) ## max(abs(x)) Mean = np.average(gradient) Skewness = skew(...
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def perform_wavelet_transf(f, Jmin, dir, filter = "9-7",separable = 0, ti = 0): """"" perform_wavelet_transf - peform fast lifting transform y = perform_wavelet_transf(x, Jmin, dir, filter = "9-7",separable = 0, ti = 0); Implement 1D and 2D symmetric wavelets with symmetric boundary treatements, using ...
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import os def loadPeaks(peakFile=None, peakfolder=None, isMacs=True, CTFlist=[], skiprows=0): """ will merge them file listed in a MACS2-way in a given MACS2 output folder all into one dataframe Args: ---- peakFile: str filepaht if just one peakfile that you want to load (else leave it empty) peakfolder: str...
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import os import glob def get_best_thresh(dat, model): """Use validation set to get the best threshold value """ # get files for this test set validation_files = dat.validation_files test_set_path = test_path() thresh_vals = np.arange(0.1, 1.0, 0.1) thresh_scores = {t: [] for t in thresh...
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def create_channel(n_or_buffer=1): """Create a new channel. As a conveinence, if n_or_buffer is a positive integer then creates a blocking buffer for the new channel. """ buf = n_or_buffer if isinstance(n_or_buffer, int): buf = create_blocking_buffer(n_or_buffer) elif buf.maxsize < ...
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def filter(src): """Filter a comments and blank lines out of heredoc-style source string""" lines = src.strip().split("\n") lines = [L.split("#")[0].strip() for L in lines] # filter comments lines = [L for L in lines if len(L) > 0] # filter empty lines return lines
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import sys def get_unicode_console(): """ Get Unicode console objects. @return: stdin, stdout, stderr, argv @rtype: tuple """ # Make Unicode console output work independently of the current code page. # This also fixes http://bugs.python.org/issue1602. # Credit to Michael Kaplan #...
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def lower_convex_hull ( bs ) : """Get lower convex hull for BSpline >>> bspline = ... >>> lower = bspline.lower_convex_hull () >>> lower = lower_convex_hull ( bspline ) - for all values of x: bspline(x) >= lower ( x ) """ return Ostap.Math.lower_convex_hull ( bs.bspline() )
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import random def death_with_chance(p_death: float) -> bool: """ Takes a float between 0 and 1 and returns a boolean if the player has survived (based on random chance) Returns True if death, False if survived """ return p_death > random.random()
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from datetime import datetime def make_timestamp(): """ Generate a timestamp of the current time. returns: datetime.datetime: The current time. """ return datetime.datetime.now()
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def _radix_length(num: int) -> int: """Finds the number of digits for a number""" if num == 0: return 1 digits: int = 0 while num != 0: digits += 1 num = int(num / 10) return digits
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import imp def _pip_install(): """If `pip` isn't installed, install it""" try: # Check if `pip` installed imp.find_module('pip') return True except ImportError: # If not installed, install it get_pip = """do shell script "python '{0}/get-pip.py'" """.format( ...
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def service(): """ Returns an instance of the service """ return Clickstream()
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def enabled(mapper, args) -> bool: """Determine if hooks are enabled for the current method.""" if not settings.HOOKS_ENABLED: return False if mapper is None: return False if mapper.manual: return False if args and isinstance(args[0], str): if args[0] in {"Meta", "...
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from typing import List from typing import Tuple from typing import Dict from typing import Union from typing import Callable def optimize_huggingface_model( model: PreTrainedModel, tokenizer: PreTrainedTokenizer, input_texts: List[str], batch_size: int, max_input_sizes: List[Tuple[int, ...]], ...
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def cli(ctx, result_id, file_path): """Download a result to a file Output: None """ return ctx.gi.result.download(result_id, file_path)
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def dummy_encode(df): """ Encode any dataframe column of type category or object. --- df: pandas dataframe """ columnsToEncode = list( df.select_dtypes(include=['category', 'object'])) df1 = df.copy() for feature in columnsToEncode: le = LabelEncoder() try: ...
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def main(reactor, jid, secret): """ Connect to the given Jabber ID and return a L{Deferred} which will be called back when the connection is over. @param reactor: The reactor to use for the connection. @param jid: A L{JID} to connect to. @param secret: A C{str} """ return Client(reactor...
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from pathlib import Path from typing import List def get_schema_metadata_error_messages(file_path: Path) -> List[str]: """Return a list of error messages for the table schema at file_path Undefined behaviour if the table schema is valid """ s = Schema(descriptor=file_path) return [err.message for...
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def create_holiday_calendar( weekend_mask=None, holidays=None, start_year=None, end_year=None): """Creates a holiday calendar. Note: providing bounds for the calendar, i.e. `holidays` and/or `start_year`, `end_year` yields a better-performing calendar. Args: weekend_mask: Boolean `Tensor` ...
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import copy def get_object_vector_to(cls, search_cls, subtype, avoid=None): """ Returns a list of all possible paths to the given class. Only searches classes that are subtype of the given class. """ # Does the name point to this class? Then we are done. if search_cls == cls: return [(...
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from typing import Any from typing import Optional import json import hashlib def gethash( value: "Any", hashtype: str = "sha256", encoding: str = "utf-8", json_encoder: "Optional[json.JSONEncoder]" = None, ) -> str: """Return a hash of `value`. Can hash most python objects. Bytes and bytearr...
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def subplot(nrows, ncols, plot_number, **kwargs): """ Returen a subplot axes positioned by the given grid definition. :param nrows, nrows: (*int*) Whree *nrows* and *ncols* are used to notionally spli the figure into ``nrows * ncols`` sub-axes. :param plot_number: (*int) Is used to identif...
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def sub(a: PipeNumeric, b: PipeNumeric) -> PipeNumeric: """ Pipeline node which subtracts b from a. :param a: parameter a :param b: parameter b :return: PipeNumeric """ if a.get_type() == b.get_type(): number_type = a.get_type() if isinstance(number_type, num.FloatingNumberTy...
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def get_raw_hcor(thing: dict) -> dict: """For an RAW hsilo-like dict, get only the non hmeta part. This function requires at leat one key that seems an hmeta, but if more than one exists, will also return None. Args: thing (dict): An HSilo-like dictionary Returns: dict: An dict wi...
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def decode_message(buf, message_type=None, timestart=None, timeout_after=10): """Decode a message to a Python dictionary. Returns tuple of (values, types) """ if message_type is None or isinstance(message_type, str): if message_type not in known_messages: message_type = {} e...
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def makeReturn(items: dict) -> dict: """ Format output for alfred """ out = {'items': items} return out
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def yices_bvproduct(n, t): """Returns the product of an array on bitvectors, or the NULL_TERM if there's an error. bvproduct(n, t): Product of n bitvector terms t[0] ... t[n-1] - n must be positive - all t[i]s must be bitvector terms of the same type (same number of bits) Error reports: if...
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async def spotify(id: str): """ A live API call to spotify, to get the information about a certain trackID :return: """ # a random api call to spotify db = get_db() songs = db.query(Songdb).order_by(func.random()).limit(1).all() db.close() song_id=[] for song in songs: s...
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from typing import Iterable def interquartile_range(data: Iterable[Real]) -> Real: """ Calculates the inter-quartile range of an iterable of real values. :param data: The real values to calculate the inter-quartile range from. :return: The upper quartile. """ ordered = sorted(data) ...
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import json def read_json(file): """ Read JSON file """ try: with open(file, 'r') as f: data = json.load(f) except FileNotFoundError: data = None return data
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import re def parse_dot_bands(bands_lines): """ Parse an CASTEP bands file Extract Kpoints and each bands for each kpoints. This is a generic parsing function. Return python builtin types. The problems is the order of the kpoints written is parallelisation dependent and may not be the same as...
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import re def ref2name(transaction, df_securities): """Find the security name corresponding to a given reference""" try: reference = transaction.findall("security")[0].attrib["reference"] regex_ = r".*/security\[(\d+)\]" index = int(re.search(regex_, reference, re.IGNORECASE).group(1))...
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def read_annotations_brainvision(fname, sfreq='auto'): """Create Annotations from BrainVision vrmk. This function reads a .vrmk file and makes an :class:`mne.Annotations` object. Parameters ---------- fname : str | object The path to the .vmrk file. sfreq : float | 'auto' T...
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def redshift_prior(zbins, prior="uniform"): """ """ available_priors = [ "uniform", "volume", ] if prior not in available_priors: msg = ("'{}' is not in the list of available priors".format(prior)) raise ValueError(msg) if prior == "uniform": Pz = np.on...
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import logging def get_logger(log_level: str) -> logging.Logger: """ Create the default logger according to log level setting of the adapter instance. """ level = { "critical": logging.CRITICAL, "error": logging.ERROR, "warning": logging.WARNING, "info": logging.INFO, ...
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def parse_visualizers(args_parser, args): """ Parses argparse arguments for visualizers, returning update_visulization and connect_visualizers. """ def update_visualization(plant, scene_graph): if args.visualize_collisions: # Find all the geometries that have not already been ma...
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def blastwave(t, p0, t0, alpha=0.0): """ Acoustic blastwave that can be used as a source for surface explosions out to several scale kilometers. Note: alpha = 0 produces the Friedlander blastwave model. Parameters ---------- ...
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import pickle import codecs def pickle_string_to_obj(string: str): """Pickle string to object Arguments: s {str} -- String object to pickle Returns: [pickle] -- base64 encoded pickled object """ unmarshal = pickle.loads(codecs.decode(string.encode(), "base64")) return...
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def get_template(im_source=None, center=None, side=None): """ Get a square template from image considering the a central coordinate. **Input:** * **im_source** (`ndarray`) Image source is the image from where the template is retrieved. * **center** (`list/tuple/ndarray`) Coordinate...
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def tvt_split(X): """ X is a pandas dataframe Function splits data into train, validation and test datasets with 80-20 split. """ train, test = train_test_split(X, train_size=0.8, test_size=0.2) train, val = train_test_split(train, train_size=0.8, test_size=0.2) return train, ...
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def longestCommonPrefix(strs): """ :type strs: List[str] :rtype: str """ if not strs or not strs[0]: return "" start=0 end=len(strs[0]) element=strs[0][start] result="" while self.check_str(element,strs,start) and start<end: result+=element start+=1 ...
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def credentials_existance(name): """ function that checks if a a particular account and its credentials exist based on searched account_name """ return Credentials.credentials_exists(name)
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import struct from unittest.mock import patch import types def load_code(self): """ Returns a Python code object like xdis.unmarshal.load_code(), but in we decrypt the data in self.bufstr. That is: * calculate the TEA key, * decrypt self.bufstr * create and return a Python code-obje...
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def _compute_initial_position(A, a, B, b): """ Compute initial beam position from two monitor read-outs at different quadrupole settings. A, B are the 7D SECTORMAPs from start to the monitor. a, b are the 2D measurement vectors (x, y) This function solves the linear system: Ax = a...
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def normalize_for_evaluation(img): """ Normalize an image to range [0,255] :param img: Image to normalize :return: Normalized image """ old_min, old_max = get_previous_range(img) # NewValue = (((OldValue - OldMin) * NewRange) / OldRange) + NewMin # NewMin = 0, NewMax = 255, NewRange = 1 ...
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def user_session_info_rpc(self, api_timeout=''): """ This is an auto-generated method for the PySwitchLib. **Supported Versions**: * NOS: 6.0.2f, 7.2.0 * SLXOS: 17r.1.01a, 17r.2.00, 17s.1.02 :type api_timeout: long or tuple(long, long) :param api_timeout: Timeout for connectio...
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def list_of_strs(value): """ Value must be iterable. All elements will be converted to strings. """ if not isiterable(value): raise ValueError(value) return list(map(str, value))
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def sample(res_kf, M, Q, u=None, nsamples=1): """ Sample from the posterior of the states given the observations. Parameters ---------- res_kf: results dict from the Kalman filter run M: np.array or list of np.arrays of shape (n, n), dynamics model matrices Q: np.array or list of np.arrays ...
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def pad_number(number, bits): """Pad integer number to bits after converting to binary.""" return f'{bin(number)[2:]:0>{bits}}'
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