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from typing import OrderedDict def unzip(zipped): """ Pull parameters from Theano shared variables """ new_params = OrderedDict() for kk, vv in zipped.items(): new_params[kk] = vv.get_value() return new_params
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from typing import Union from typing import Callable def divisible_shape(divisor: AxesLike, axes: AxesLike = None, padding_values: Union[AxesParams, Callable] = 0, ratio: AxesParams = 0.5): """ Pads an incoming array to be divisible by ``divisor`` along the ``axes``. Afterwards the padding...
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def dQHIIdz(y, z,a,b,c,d): # specify the initial time point t0=0 """ Gives differential eq. for QHII """ theta=(a,b,c,d) trec = 3.19e2*(1+z)**(-3.) * (3./hz.Ch2)#ch2=3 H0m1 = 9.77*hz.h**(-1) #9.77*h^-1 Gyr dtdz = -H0m1*1./(1+z)*(hz.Om*(1+z)*...
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def linear(z): """The linear activation function""" return z
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import torch def sequence_mask(lens: torch.Tensor, max_len: int = None) -> torch.ByteTensor: """ Compute sequence mask. Parameters ---------- lens : torch.Tensor Tensor of sequence lengths ``[batch_size]``. max_len : int, optional (default: None) The maximum length (optional)...
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def pack_bin(in1): """ Pack binary arrary. Data will be packed with little endian for NVIDIA GPU compatibility. Parameters ---------- in1 : ndarray The ndarray to be pack at binary. Returns ------- out : ndarray An 1-dimensional array containing packed binary data. ...
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def boltzman_average_bond_order(bond_orders): """ Calculate the Boltzmann weighted bond order average. Parameters ---------- bond_orders: Dictionary of bond orders. The key is the energy of the molecule. Returns ------- bond_order_arrays: Dictionary of Boltzmann weighted bond orders. ...
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def compare_mssim(x_true, x_pred, data_range, multidimension, detail=False): """ :param x_true: :param x_pred: :param data_range: :param multidimension: :return: """ mssim = [structural_similarity(x_true[:, :, i], x_pred[:, :, i], data_range=data_range, multidimension=multidimension) ...
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def get_slave_exception_by_error(error: HTTPError) -> SlaveResponseException: """ Overview: Auto transform http error object to slave response exception object. Arguments: - error (:obj:`HTTPError`): Http error object Returns: - exception (:obj:`SlaveResponseException`): Slave re...
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def model_run(config_data): """ModelRun built from config """ return ModelRun.from_dict(config_data)
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def post_user_stats(user_info): # noqa: E501 """updates current user statistics count # noqa: E501 :param user_info: Which os and platform is the user on. :type user_info: dict | bytes :rtype: None """ if user_info is not None: (stat_id, windowsCount, macosCount, otherCount, isD...
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def check_game_finish(board, mark): """Return boolean value is the game finished or not.""" if win_check(board, mark): print(f'The player with the mark "{mark}" wins!') return True if full_board_check(PLAY_BOARD): print('The game ended in a draw.') return True return Fa...
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from operator import inv def generate_position_field( affine, velocity_fields, velocity_field_resolution, template_shape, template_resolution, target_shape, target_resolution, deform_to="template", ): """ Integrate velocity_fields and apply affine to produce a position field. ...
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import random def unique_random_string(model, field, length=16): """ Generates a random alphanumeric string, unique in code field from a django class model :param length: Length of the generated string. :param model: Model class, it has a code field. :param field: field name to be sure is unique. ...
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def async_pipe(*args, **kwargs): """A processor that asynchronously extracts sub-elements from an item. Args: item (dict): The entry to process kwargs (dict): The keyword arguments passed to the wrapper Kwargs: conf (dict): The pipe configuration. Must contain the key 'path'. May ...
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def nature_cnn_lite(scaled_images, **kwargs): """ CNN from Nature paper. :param scaled_images: (TensorFlow Tensor) Image input placeholder :param kwargs: (dict) Extra keywords parameters for the convolutional layers of the CNN :return: (TensorFlow Tensor) The CNN output layer """ activ = tf....
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def extractValue(value, attrVal, attrLang, ttlList): """ Helper for getAttributes. It decides which characters are added to the value. For data properties: ""; for object properties: <>; for language tags: ""@<lang> """ if 'acdhi:' in value: ttlList.append(' '.join([attrVal, value])) eli...
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import os import tempfile def run_tiling(ds_or_path, **kwargs): """ Run the tiling process :param ds_or_path: The :class:`gdal.Dataset` or a path to a file on disk to be tiled :type ds_or_path: :class:`gdal.Dataset` or str :param kwargs: Optional arguments. :return: Creates the tiles in the g...
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import os import gzip def getSTRINGMapping(source="BLAST_UniProt_AC", download=True, db="STRING"): """ Parses database (db) and extracts relationships between identifiers to order databases (source). :param str url: link to download database raw file. :param str source: name of the source database fo...
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def modify_instance_or_cluster_for_verify(database, sg_ids): """Modify an RDS Instance or Cluster to allow connections. Args: database (:class:`dbsnap.database.Database`): the database or cluster to modify to allow access for verification routines. sg_ids (list): Security group ids t...
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def time_between_shutdowns(loglines): """TODO 2: Extract shutdown events ("Shutdown initiated") from loglines and calculate the timedelta between the first and last one. Return this datetime.timedelta object. """ shutdowns = [line for line in loglines if 'Shutdown initiated' in line] ...
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def numerordinatio_descendentibus( numerordinatio: str, collectio: list, ordo_maximo: int = None) -> list: """numerordinatio_descendentibus _summary_ Trivia: - collēctiō, s, f, , nominativus - dēscendentibus, pl, m/f/n, , dativus, https://en.wiktionary.org/wiki/descendens#Latin - ō...
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from math import cos, sin def general_rotation(x, y, z, a, b, c, u, v, w, angle): """ Rotation about an arbitrary line x,y,z : point to rotate a,b,c : line through point u,v,w : direction vector of the line (normalized) angle : rotation angle in radians when looked down the rotation ax...
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def get_option_block_info(block): """.""" os_name = sys_info.get_os_name() block_info = {'names': []} heads = get_heads(block) item_blocks = get_blocks_by_heads(block, heads) for item_block in item_blocks: head = get_heads(item_block)[0] item_block = remove_block_head(item_block...
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def read_fasta(filepath, to_df = False): """ Read data from a fasta file. Arguments --------- filename : str, the path to a file in fasta format. to_df : bool, should the function return a pandas dataframe instead of a list of dicts? (default is False) Returns --------- out : list, a list of sequence...
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import pbsmrtpipe.pb_io as IO import itertools import copy import os import uuid def add_gather_to_completed_task_chunks(bg, chunk_operators_d, registered_tasks_d, tasks_root_dir): """Create the gathered.chunk.json by gathering the Chunked Task Instances. 1. Find all scattered task nodes 2. Find all the ...
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def pca_localized_set(patient_id): """Simplified API for setting clinical PCa localized status w/o FHIR Requires simple JSON doc to set PCaLocalized diagnosis: '{"value": true}' Raises 401 if logged-in user lacks permission to edit requested patient. --- operationId: setPCaLocalized tags:...
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def compute_min_altitude(height, field_of_regard): """ Fast computation of minimum altitude angle required to observe a point. Args: height (float): Height (meters) above surface of the observation. field_of_regard (float): Angular width (degrees) of observation. Returns: float...
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import pickle def load_params(): """ Load parameters from file """ return pickle.load(open('params.p', mode='rb'))
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import time import calendar def get_certificates(params, node, server): """Convert XML Certificates metric to ZabbixMetric Return Zabbix packet elements. """ if params is None or node is None or server is None: return None p = [] try: name = node.find('./m:name', NS).text ...
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def parse_request_headers(headers): """ @param headers: @return: """ request_headers_keys = set(headers.keys(lower=True)) request_meta_keys = set(XHEADERS_TO_ARGS_DICT.keys()) data_headers_keys = request_headers_keys.intersection(request_meta_keys) return dict(([XHEADERS_TO_ARGS_DICT[key...
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def insertion_sort(arr): """Performs insertion sort of given IntsToSort""" if len(arr) < 2: return arr if len(arr) > 1: i = 1 while i < len(arr): curr_val = arr[i] j = i - 1 # Start with curr val and compare to all previous values whil...
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from datetime import datetime def get_latest_news(channel, top=None, show_Body=False): """ 获取即时新闻 Parameters ------- channel: str, 待获取的新闻所在频道(id或名称) top: int, 最多获取多少条新闻,默认None全获取 show_body: bool, 是否返回新闻正文,默认False不返回 Result ------- pandas.DataFrame, 包括如下列: ...
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def cartesian2spherical(m): """Convert from cartesian to spherical""" # nC = int(len(m)/3) x = m[:, 0] y = m[:, 1] z = m[:, 2] a = (x**2.0 + y**2.0 + z**2.0) ** 0.5 t = np.zeros_like(x) t[a > 0] = np.arcsin(z[a > 0] / a[a > 0]) p = np.zeros_like(x) p[a > 0] = np.arctan2(y[a ...
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import unittest def nightly_gpu(): """ Nightly GPU tests. Runs on CircleCI nightly, and when [gpu] or [long] appears in a commit string. """ test_loader = unittest.TestLoader() test_suite = test_loader.discover('tests/nightly/gpu') test_suite = _circleci_parallelism(test_suite) return...
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def robot_x_fn(state, u = None, dt=1.0): """ State update for nonlinear system Computes next state using the non-linear dynamics """ x = state.value[0][0] y = state.value[1][0] theta = state.value[2][0] v = state.value[3][0] w = state.value[4][0] x += v * cos(theta)*dt y +=...
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def default_resolution(): """Note that this and the number of ts objects created below are fine tuned for these tests to create just over a week of data, and changing them might cause the tests to fail. See docstrings of tests for info""" return 20
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def dataframe_to_panel_by_colgroup(df,keylist,prefix='',surfix=''): """ transfer a dataframe into panel by separating the columns into different groups by keywords. Parameters: ----------- keylist: a list of strings indicating the keylists used to group the columns. """ if n...
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import torch def embedding_similarity( batch: torch.Tensor, similarity: str = 'cosine', reduction: str = 'none', zero_diagonal: bool = True ) -> torch.Tensor: """ Computes representation similarity Example: >>> from pytorch_lightning.metrics.functional import embedding_similarity ...
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def non_independent_joint(a, operation, b): """非独立联合事件""" if operation == 'and' or operation == MathSymbols.intersection: return a * non_independent_joint(b, MathSymbols.condition, a)
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def read_annotation_from_dataset(dataset: (list, tuple, dict), label_key): """reads the annotation from dataset. Basically reverting annotate. Args: dataset: label_key: Returns: annotation >>> dataset = [{'timestamp': 0., 'audio_length': 1.}, {'timestamp': 2., 'audio_length': 5.}, {'t...
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def get_plots_figure(should_show_plots, should_write_movie): """ :param should_show_plots: Indicates whether the animation of SLAM should be plotted, in real time. :param should_write_movie: Indicates whether the animation of SLAM should be written to a movie file. :return: A figure if the plots should ...
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import requests import tqdm def stock_jgdy_tj_em(date: str = "20220101") -> pd.DataFrame: """ 东方财富网-数据中心-特色数据-机构调研-机构调研统计 http://data.eastmoney.com/jgdy/tj.html :param date: 开始时间 :type date: str :return: 机构调研统计 :rtype: pandas.DataFrame """ url = "http://datacenter-web.eastmoney.com...
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from typing import List from typing import Dict from typing import Any def venue_author_representation( venues: List[str], published_papers: List[Dict[str, Any]] ) -> np.ndarray: """Create an author vector representation based on the venues an author has published at. The returned vector is N-dimensional...
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def reconstruct_parallel2d(img, basis, ncores=8, algo=reconstruct_1Dmagic): """A simple wrapper to reconstruct 2D images assuming the lines are independent. Careful, this wrapper consider the lines as independent reconstructions to be performed. Args: - img (numpy 2d matrix mxN): input compressed m...
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from typing import List from typing import Dict from typing import Any import logging import json def entity2tag(token_list: List[str], entities: List[Dict[str, Any]]): """ 将实体 entity 格式转为 tag 格式,若标注过程中有重叠标注,则会自动将靠后的 实体忽略、删除。针对单条处理,不支持批量处理。 Args: token_list(List[str]): token 化的文本的 list en...
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def results(domain): """.""" xn = XNTwist() results = xn.twist(domain, simple=True) return render_template('results.html', domain=domain, possible_squats=results['possible_squats'], count=results['count'])
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import logging import csv def write_to_csv(incidents, fields_dict, filename, max_count=None, filter=None, in_log=None): """ Write incidents to a CSV file according to the field definition. This function is factorized out intentionally for better unit test. :param incidents: list of incidents in...
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def add_cell_to_compute_node(compute_node, cell_name): """Fix compute_node attributes that should be unique. Allows API cell to query the 'id' by cell@id. """ # NOTE(sbauza): As compute_node is a ComputeNode object, we need to wrap it # for adding the cell_path information compute_proxy = Compu...
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def im_detect_keypoints_scale(model, im, scale, max_size, boxes, hflip=False): """Computes keypoint predictions at the given scale.""" # Store the original scale orig_scales = cfg.TEST.SCALES orig_max_size = cfg.TEST.MAX_SIZE # Perform detection at the given scale cfg.TEST.SCALES = (scale, ) ...
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def bundle_archive(request, tmp_path): """ Prepare tar file from dir without using bundle packer """ return _pack_bundle(request.param, tmp_path)
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import sys def loadingFinder(load): """ """ _load = str(load).lower() _load = _load.replace(' ','') _load = _load.replace('-','') _load = _load.replace('_','') _load = _load.strip() # _static = ['static'] _dyamic = ['dynamic'] # if _load in _static : _type = 'static' ...
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def lmap(*args, **kwargs): """Take map generator and make a list for Python 3 work""" return list(map(*args, **kwargs))
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import os def get_run_directory() -> str: """Returns the run directory for the current rank. Returns: str: The run directory. """ run_dir = os.path.join(get_node_run_directory(), f"rank_{dist.get_global_rank()}") os.makedirs(run_dir, exist_ok=True) return run_dir
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from typing import Optional from typing import Union def eckart( vibfreq: float, delta_forward: float, delta_backward: Optional[float] = None, temperature: Union[float, np.ndarray] = 298.15, ) -> Union[float, np.ndarray]: """Calculate the Eckart correction to quantum tunneling. References are...
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import json from typing import OrderedDict def _handle_response(response, feature_names, feature_names_accu): """Parse an elasticsearch response from requests into a feature vector. Parameters ---------- response : dict msearch responses feature_names : list feature names feat...
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def is_space_element(level_element: LevelElement) -> bool: """Determines whether the object is a `Space` level element or not.""" return isinstance(level_element, Space)
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import os def decide_verifier(file, szexe=None): """ Decide which verifier function to use. :param file: Filename. :type file: str :param szexe: Path to 7z executable, if needed. :type szexe: str """ print("VERIFYING: {0}".format(file)) if file.endswith(".7z") and szexe is not No...
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def fib(n): """ Computing the nth of Fib series Implemetation focusing on 1 time running of fib. """ memoire = [0] * 100 def rec_fib(n): if n == 1 or n == 2: memoire[n-1] = 1 return 1 else: if memoire[n - 1] == 0: mem...
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def cfg_get(cfgfile,item,delimiter,detail=False, config=None): """Get value of a config item. """ if not config: config = loadconfig(cfgfile,delimiter,detail=detail) if config.has_key(item): return config[item] else: return None
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def Find(string1, string2): """Looks for a substring inside a specified string.""" return NexRun("Find", locals())
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def sort_tables(tables, skip_fn=None, extra_dependencies=None): """sort a collection of Table objects in order of their foreign-key dependency.""" tables = list(tables) tuples = [] if extra_dependencies is not None: tuples.extend(extra_dependencies) def visit_foreign_key(fk...
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def RNA_to_AA(numeric_columns): """ Translate an RNA codon to its corresponding amino acid """ return translation[codon]
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def remove_stopwords(text, swords=None): """Remove stopwords """ if swords is None: swords = stopwords.words('english') words = wordpunct_tokenize(text) words = [w for w in words if w not in swords] text = ' '.join(words) return text
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def u2_(U1, h=1., z1=2., z2=10.): # pragma: no cover """ :param xU1: measurement at one height :param xh: canopy height (m) :param xz: measurement height (m) :return u2: wind at another height """ zo = zo_(h) d = d_(h) return U1*(log((z2 - d) / zo))/(log((z1 - d) / zo))
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def build_pmid_exclusion_filter(pmids: Strings) -> EdgePredicate: """Fail for edges with citations whose references are one of the given PubMed identifiers. :param pmids: A PubMed identifier or list of PubMed identifiers to filter against """ return invert_edge_predicate(build_pmid_inclusion_filter(pmi...
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def onboarding_ml_app_patterns_get(): # noqa: E501 """Get list of all MLApp patterns # noqa: E501 :rtype: List[MLAppPattern] """ return 'do some magic!'
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def extractMask(video_masks, frame_time): """ Extract one mask from a group of videomasks given the frame_time :param video_masks: :param frame_time: time or frame number :return: """ extract_time_tuple = tool_set.getMilliSecondsAndFrameCount(frame_time, defaultValue=(0, 1)) timeManager...
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import tempfile import os import subprocess def run_c_source(src, cflags): """ Compile and run C source code :param src: the c language code to run :param cflags: additional cflags passing to compiler :return: """ binname = tempfile.mktemp(prefix="mbedtls") fd, srcname = tempfile.mkste...
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def FormatArguments(*args, **kwargs): """Format function call arguments in a human-readable way for logging.""" def _FormatArg(arg): return FormatLogArgument(arg) # Truncate arguments. args = [_FormatArg(arg) for arg in args] kwargs = {key: _FormatArg(value) for key, value in kwargs.items()} return "(...
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def _fetchUnicodes(glif): """ Get a list of unicodes listed in glif. """ parser = _FetchUnicodesParser() parser.parse(glif) return parser.unicodes
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from datetime import datetime def login_user(): """ Function to check the user credentials. If they are correct, then generate a valid JWT token and return it. :return: status of the request or the user token """ # if the request doesn't have a Basic Authentication header, then discard it ...
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def plot3d(*args, **kwargs): """ Create a 3D surface plot of the specified 2D array (matrix). Plot3D image(surface): surface is a 2D array (matrix). Plot3D image(x, y, surface): surface is a 2D array (matrix); x and y are matrices of the same size that provide the x and y coordinates. x and y are expect...
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def run_county(fips): """ Run the R_t inference for each county in a state. Parameters ---------- fips: str County fips to run against """ if not fips: return None df = RtInferenceEngine.run_for_fips(fips) county_output_file = get_run_artifact_path(fips, RunArtifact...
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def parse_test_names( filedoc ): """ Determine the test name and check for validity. If this XML file is not an "rtest" then returns None. Otherwise returns a list of test names. """ if filedoc == None or filedoc.getName() != "rtest": return [] # determine the test name name = fi...
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def get_files(path, keywords = ["features_ OR msd_"]): """ Takes in a path and list of keywords. Returns a list of filenames that are within the path that contain one of the keyword in the list. Set keyword to "" to get all files in the path. Parameters ---------- path : string file...
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def EndOfBatches() -> Data: """Construct a 'end of batches' marker.""" return Data(graph_ids=[], data=None, end_of_batches=True)
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def GetClientInstance(release_track=base.ReleaseTrack.GA, use_http=True): """Returns an instance of the Cloud Build client. Args: release_track: The desired value of the enum googlecloudsdk.calliope.base.ReleaseTrack. use_http: bool, True to create an http object for this client. Returns: base...
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def driver_fixture(client, controller_state): """Return a driver instance with a supporting client.""" return Driver(client, controller_state)
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import math def project_onto_ball(positions, head_position, radius): """ params: positions: 3-d numpy array, the original positions collected from unity params: head_position: 3-d numpy array, the center of fitting sphere params: radius: float, radius of the sphere return: """ new_position...
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def authorize_twitter(): """Authorize a user's Twitter account.""" TWITTER_REDIRECT_URL = url_for("get_twitter_token", _external=True) twitter_oauth = tweepy.OAuthHandler(TWITTER_CONSUMER_KEY, TWITTER_CONSUMER_SECRET, TWITTER_RE...
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import warnings def preprocess_dataset(X, y = None): """ Performs feature scaling, one-hot encoding of labels and shuffles the data if labels are provided. Assumes original dataset is sorted by labels. Parameters ---------- X : ndarray Dataset array c...
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def tenant_user_admin(db) -> TenantUser: """Returns Admin User instance.""" with schema_context('public'): return TenantUser.objects.create_superuser( _USER_PASS, email='super@user.com', )
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def ht_is_filled(x, y, intensity): """Returns 1 if halftone pixel is black, 0 if white""" return bayer_4x4[x&3][y&3] > intensity
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from typing import OrderedDict def _raw_at_zoom(config, zooms): """Return parameter dictionary per zoom level.""" params_per_zoom = OrderedDict() for zoom in zooms: params = OrderedDict() for name, element in config.items(): if name not in _RESERVED_PARAMETERS: ...
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import itertools def get_adj_list(cities_file): """Return a list of adjacencies (assuming all city-to-city edges are feasible) along with the length of each edge (in km). """ cities = load_cities(cities_file) return itertools.combinations(cities, 2)
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from typing import Set def rationalize(flt: float, denominators: Set[int] = None) -> Fraction: """Convert a floating point number to a Fraction with a small denominator. Args: flt: A floating point number denominators: Collection of standard denominators. Default is ...
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import json import types def async_transcribe(id): """ Transcribe the given audio file asynchronously and output the word time offsets. """ file_metadata = json.loads(get_file_metadata(id)) client = speech.SpeechClient() audio = types.RecognitionAudio(uri=file_metadata['uri']) config ...
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def filtermed_image(data, border=10, filter_size=2): """Process image by removing the borders and filtering it via a median filter Input ----- data: 2d array Array to be processed border: int Number of pixels to remove at each edge filter_size: float Size of the...
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def has_deco(deconames, tree, userlambdas=[]): """Return whether a FunctionDef or a decorated lambda has any given deco applied. deconames: list of decorator names to test. userlambdas: list of ``id(some_tree)``; when detecting a lambda, only consider it if its id matches one of those in the list. ...
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from io import StringIO import csv import requests def show_redbull_history_csv(message): """RedBullの月単位の消費履歴をCSVに出力する :param message: slackbotの各種パラメータを保持したclass """ s = Session() consume_hisotry = (s.query(RedbullHistory) .filter(RedbullHistory.delta < 0) ...
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from typing import List def find_closest_indices(values: List[float], target_values: List[float]) -> List[int]: """ Finds the indices in ``values`` that result in values closest to ``target_values``. """ closest_indices = [(np.abs(values - target_value)).argmin() for target_value in target_values] ...
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def shades(name: str): """Create motorized shades with given name.""" return { "name": name, "type": DeviceType.MOTORIZED_SHADES, "actions": ["Open", "Close", "Hold"], }
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def count_comparison(combined_df): """ Provides a DataFrame that compares counts of growthcleanr categories between runs. Parameters: combined_df: A DataFrame in the format provided by prepare_for_comparison Returns: A DataFrame where the categories are the index and the columns are the run names. """ ...
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def get_decimalized_value(fact_a, fact_b, xule_context): """Adjust 2 fact values based on accuracy. :param fact_a: First fact :type fact_a: ModelFact :param fact_b: Second fact :type fact_b: ModelFact :returns: A tuple of the rounded fact values and the new decimals value for each :rtyp...
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def max_minimum_allocation_for_families(instance, families) -> AllocationToFamilies: """ Find the max-minimum (aka Egalitarian) allocation. :param agents: a matrix v in which each row represents an agent, each column represents an object, and v[i][j] is the value of agent i to object j. :param families:...
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def _get_matching_coords(coords, params, shape): """ Get the matching coords across a number of broadcast operands. Parameters ---------- coords : list[numpy.ndarray] The input coordinates. params : list[Union[bool, none]] The broadcast parameters. Returns ------- nu...
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def decode(daq_path, dataset): """ Converts char array into readible strings from the daq. Inputs: dataset (str): '/' seperated directory path to to_dataset Returns: list of strings contained in the dataset """ with h5py.File(daq_path, 'r') as f: try: strs =...
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def run_process(cmd_args, cwd=None): """Runs the given process and returns its output and exit code. """ try: return subprocess.check_output(cmd_args, stderr=subprocess.STDOUT, cwd=cwd), 0 except subprocess.CalledProcessError, e: return e.output, e.returncode
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from operator import inv def generate_normals(m,P): """ Generate a Gaussian sample with mean m and precision P Parameters ---------- m array of shape n: the mean vector P array of shape (n,n): the precision matrix Returns ------- ng : array of shape(n): a draw from th...
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