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mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_boundary.py

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+"""Unit tests for the :mod:`networkx.algorithms.boundary` module."""
+
+from itertools import combinations
+
+import pytest
+
+import networkx as nx
+from networkx import convert_node_labels_to_integers as cnlti
+from networkx.utils import edges_equal
+
+
+class TestNodeBoundary:
+    """Unit tests for the :func:`~networkx.node_boundary` function."""
+
+    def test_null_graph(self):
+        """Tests that the null graph has empty node boundaries."""
+        null = nx.null_graph()
+        assert nx.node_boundary(null, []) == set()
+        assert nx.node_boundary(null, [], []) == set()
+        assert nx.node_boundary(null, [1, 2, 3]) == set()
+        assert nx.node_boundary(null, [1, 2, 3], [4, 5, 6]) == set()
+        assert nx.node_boundary(null, [1, 2, 3], [3, 4, 5]) == set()
+
+    def test_path_graph(self):
+        P10 = cnlti(nx.path_graph(10), first_label=1)
+        assert nx.node_boundary(P10, []) == set()
+        assert nx.node_boundary(P10, [], []) == set()
+        assert nx.node_boundary(P10, [1, 2, 3]) == {4}
+        assert nx.node_boundary(P10, [4, 5, 6]) == {3, 7}
+        assert nx.node_boundary(P10, [3, 4, 5, 6, 7]) == {2, 8}
+        assert nx.node_boundary(P10, [8, 9, 10]) == {7}
+        assert nx.node_boundary(P10, [4, 5, 6], [9, 10]) == set()
+
+    def test_complete_graph(self):
+        K10 = cnlti(nx.complete_graph(10), first_label=1)
+        assert nx.node_boundary(K10, []) == set()
+        assert nx.node_boundary(K10, [], []) == set()
+        assert nx.node_boundary(K10, [1, 2, 3]) == {4, 5, 6, 7, 8, 9, 10}
+        assert nx.node_boundary(K10, [4, 5, 6]) == {1, 2, 3, 7, 8, 9, 10}
+        assert nx.node_boundary(K10, [3, 4, 5, 6, 7]) == {1, 2, 8, 9, 10}
+        assert nx.node_boundary(K10, [4, 5, 6], []) == set()
+        assert nx.node_boundary(K10, K10) == set()
+        assert nx.node_boundary(K10, [1, 2, 3], [3, 4, 5]) == {4, 5}
+
+    def test_petersen(self):
+        """Check boundaries in the petersen graph
+
+        cheeger(G,k)=min(|bdy(S)|/|S| for |S|=k, 0<k<=|V(G)|/2)
+
+        """
+
+        def cheeger(G, k):
+            return min(len(nx.node_boundary(G, nn)) / k for nn in combinations(G, k))
+
+        P = nx.petersen_graph()
+        assert cheeger(P, 1) == pytest.approx(3.00, abs=1e-2)
+        assert cheeger(P, 2) == pytest.approx(2.00, abs=1e-2)
+        assert cheeger(P, 3) == pytest.approx(1.67, abs=1e-2)
+        assert cheeger(P, 4) == pytest.approx(1.00, abs=1e-2)
+        assert cheeger(P, 5) == pytest.approx(0.80, abs=1e-2)
+
+    def test_directed(self):
+        """Tests the node boundary of a directed graph."""
+        G = nx.DiGraph([(0, 1), (1, 2), (2, 3), (3, 4), (4, 0)])
+        S = {0, 1}
+        boundary = nx.node_boundary(G, S)
+        expected = {2}
+        assert boundary == expected
+
+    def test_multigraph(self):
+        """Tests the node boundary of a multigraph."""
+        G = nx.MultiGraph(list(nx.cycle_graph(5).edges()) * 2)
+        S = {0, 1}
+        boundary = nx.node_boundary(G, S)
+        expected = {2, 4}
+        assert boundary == expected
+
+    def test_multidigraph(self):
+        """Tests the edge boundary of a multidigraph."""
+        edges = [(0, 1), (1, 2), (2, 3), (3, 4), (4, 0)]
+        G = nx.MultiDiGraph(edges * 2)
+        S = {0, 1}
+        boundary = nx.node_boundary(G, S)
+        expected = {2}
+        assert boundary == expected
+
+
+class TestEdgeBoundary:
+    """Unit tests for the :func:`~networkx.edge_boundary` function."""
+
+    def test_null_graph(self):
+        null = nx.null_graph()
+        assert list(nx.edge_boundary(null, [])) == []
+        assert list(nx.edge_boundary(null, [], [])) == []
+        assert list(nx.edge_boundary(null, [1, 2, 3])) == []
+        assert list(nx.edge_boundary(null, [1, 2, 3], [4, 5, 6])) == []
+        assert list(nx.edge_boundary(null, [1, 2, 3], [3, 4, 5])) == []
+
+    def test_path_graph(self):
+        P10 = cnlti(nx.path_graph(10), first_label=1)
+        assert list(nx.edge_boundary(P10, [])) == []
+        assert list(nx.edge_boundary(P10, [], [])) == []
+        assert list(nx.edge_boundary(P10, [1, 2, 3])) == [(3, 4)]
+        assert sorted(nx.edge_boundary(P10, [4, 5, 6])) == [(4, 3), (6, 7)]
+        assert sorted(nx.edge_boundary(P10, [3, 4, 5, 6, 7])) == [(3, 2), (7, 8)]
+        assert list(nx.edge_boundary(P10, [8, 9, 10])) == [(8, 7)]
+        assert sorted(nx.edge_boundary(P10, [4, 5, 6], [9, 10])) == []
+        assert list(nx.edge_boundary(P10, [1, 2, 3], [3, 4, 5])) == [(2, 3), (3, 4)]
+
+    def test_complete_graph(self):
+        K10 = cnlti(nx.complete_graph(10), first_label=1)
+
+        def ilen(iterable):
+            return sum(1 for i in iterable)
+
+        assert list(nx.edge_boundary(K10, [])) == []
+        assert list(nx.edge_boundary(K10, [], [])) == []
+        assert ilen(nx.edge_boundary(K10, [1, 2, 3])) == 21
+        assert ilen(nx.edge_boundary(K10, [4, 5, 6, 7])) == 24
+        assert ilen(nx.edge_boundary(K10, [3, 4, 5, 6, 7])) == 25
+        assert ilen(nx.edge_boundary(K10, [8, 9, 10])) == 21
+        assert edges_equal(
+            nx.edge_boundary(K10, [4, 5, 6], [9, 10]),
+            [(4, 9), (4, 10), (5, 9), (5, 10), (6, 9), (6, 10)],
+        )
+        assert edges_equal(
+            nx.edge_boundary(K10, [1, 2, 3], [3, 4, 5]),
+            [(1, 3), (1, 4), (1, 5), (2, 3), (2, 4), (2, 5), (3, 4), (3, 5)],
+        )
+
+    def test_directed(self):
+        """Tests the edge boundary of a directed graph."""
+        G = nx.DiGraph([(0, 1), (1, 2), (2, 3), (3, 4), (4, 0)])
+        S = {0, 1}
+        boundary = list(nx.edge_boundary(G, S))
+        expected = [(1, 2)]
+        assert boundary == expected
+
+    def test_multigraph(self):
+        """Tests the edge boundary of a multigraph."""
+        G = nx.MultiGraph(list(nx.cycle_graph(5).edges()) * 2)
+        S = {0, 1}
+        boundary = list(nx.edge_boundary(G, S))
+        expected = [(0, 4), (0, 4), (1, 2), (1, 2)]
+        assert boundary == expected
+
+    def test_multidigraph(self):
+        """Tests the edge boundary of a multidigraph."""
+        edges = [(0, 1), (1, 2), (2, 3), (3, 4), (4, 0)]
+        G = nx.MultiDiGraph(edges * 2)
+        S = {0, 1}
+        boundary = list(nx.edge_boundary(G, S))
+        expected = [(1, 2), (1, 2)]
+        assert boundary == expected

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_broadcasting.py

@@ -0,0 +1,82 @@
+"""Unit tests for the broadcasting module."""
+
+import math
+
+import networkx as nx
+
+
+def test_example_tree_broadcast():
+    """
+    Test the BROADCAST algorithm on the example in the paper titled: "Information Dissemination in Trees"
+    """
+    edge_list = [
+        (0, 1),
+        (1, 2),
+        (2, 7),
+        (3, 4),
+        (5, 4),
+        (4, 7),
+        (6, 7),
+        (7, 9),
+        (8, 9),
+        (9, 13),
+        (13, 14),
+        (14, 15),
+        (14, 16),
+        (14, 17),
+        (13, 11),
+        (11, 10),
+        (11, 12),
+        (13, 18),
+        (18, 19),
+        (18, 20),
+    ]
+    G = nx.Graph(edge_list)
+    b_T, b_C = nx.tree_broadcast_center(G)
+    assert b_T == 6
+    assert b_C == {13, 9}
+    # test broadcast time from specific vertex
+    assert nx.tree_broadcast_time(G, 17) == 8
+    assert nx.tree_broadcast_time(G, 3) == 9
+    # test broadcast time of entire tree
+    assert nx.tree_broadcast_time(G) == 10
+
+
+def test_path_broadcast():
+    for i in range(2, 12):
+        G = nx.path_graph(i)
+        b_T, b_C = nx.tree_broadcast_center(G)
+        assert b_T == math.ceil(i / 2)
+        assert b_C == {
+            math.ceil(i / 2),
+            math.floor(i / 2),
+            math.ceil(i / 2 - 1),
+            math.floor(i / 2 - 1),
+        }
+        assert nx.tree_broadcast_time(G) == i - 1
+
+
+def test_empty_graph_broadcast():
+    H = nx.empty_graph(1)
+    b_T, b_C = nx.tree_broadcast_center(H)
+    assert b_T == 0
+    assert b_C == {0}
+    assert nx.tree_broadcast_time(H) == 0
+
+
+def test_star_broadcast():
+    for i in range(4, 12):
+        G = nx.star_graph(i)
+        b_T, b_C = nx.tree_broadcast_center(G)
+        assert b_T == i
+        assert b_C == set(G.nodes())
+        assert nx.tree_broadcast_time(G) == b_T
+
+
+def test_binomial_tree_broadcast():
+    for i in range(2, 8):
+        G = nx.binomial_tree(i)
+        b_T, b_C = nx.tree_broadcast_center(G)
+        assert b_T == i
+        assert b_C == {0, 2 ** (i - 1)}
+        assert nx.tree_broadcast_time(G) == 2 * i - 1

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_communicability.py

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+from collections import defaultdict
+
+import pytest
+
+pytest.importorskip("numpy")
+pytest.importorskip("scipy")
+
+import networkx as nx
+from networkx.algorithms.communicability_alg import communicability, communicability_exp
+
+
+class TestCommunicability:
+    def test_communicability(self):
+        answer = {
+            0: {0: 1.5430806348152435, 1: 1.1752011936438012},
+            1: {0: 1.1752011936438012, 1: 1.5430806348152435},
+        }
+        #        answer={(0, 0): 1.5430806348152435,
+        #                (0, 1): 1.1752011936438012,
+        #                (1, 0): 1.1752011936438012,
+        #                (1, 1): 1.5430806348152435}
+
+        result = communicability(nx.path_graph(2))
+        for k1, val in result.items():
+            for k2 in val:
+                assert answer[k1][k2] == pytest.approx(result[k1][k2], abs=1e-7)
+
+    def test_communicability2(self):
+        answer_orig = {
+            ("1", "1"): 1.6445956054135658,
+            ("1", "Albert"): 0.7430186221096251,
+            ("1", "Aric"): 0.7430186221096251,
+            ("1", "Dan"): 1.6208126320442937,
+            ("1", "Franck"): 0.42639707170035257,
+            ("Albert", "1"): 0.7430186221096251,
+            ("Albert", "Albert"): 2.4368257358712189,
+            ("Albert", "Aric"): 1.4368257358712191,
+            ("Albert", "Dan"): 2.0472097037446453,
+            ("Albert", "Franck"): 1.8340111678944691,
+            ("Aric", "1"): 0.7430186221096251,
+            ("Aric", "Albert"): 1.4368257358712191,
+            ("Aric", "Aric"): 2.4368257358712193,
+            ("Aric", "Dan"): 2.0472097037446457,
+            ("Aric", "Franck"): 1.8340111678944691,
+            ("Dan", "1"): 1.6208126320442937,
+            ("Dan", "Albert"): 2.0472097037446453,
+            ("Dan", "Aric"): 2.0472097037446457,
+            ("Dan", "Dan"): 3.1306328496328168,
+            ("Dan", "Franck"): 1.4860372442192515,
+            ("Franck", "1"): 0.42639707170035257,
+            ("Franck", "Albert"): 1.8340111678944691,
+            ("Franck", "Aric"): 1.8340111678944691,
+            ("Franck", "Dan"): 1.4860372442192515,
+            ("Franck", "Franck"): 2.3876142275231915,
+        }
+
+        answer = defaultdict(dict)
+        for (k1, k2), v in answer_orig.items():
+            answer[k1][k2] = v
+
+        G1 = nx.Graph(
+            [
+                ("Franck", "Aric"),
+                ("Aric", "Dan"),
+                ("Dan", "Albert"),
+                ("Albert", "Franck"),
+                ("Dan", "1"),
+                ("Franck", "Albert"),
+            ]
+        )
+
+        result = communicability(G1)
+        for k1, val in result.items():
+            for k2 in val:
+                assert answer[k1][k2] == pytest.approx(result[k1][k2], abs=1e-7)
+
+        result = communicability_exp(G1)
+        for k1, val in result.items():
+            for k2 in val:
+                assert answer[k1][k2] == pytest.approx(result[k1][k2], abs=1e-7)

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_d_separation.py

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+from itertools import combinations
+
+import pytest
+
+import networkx as nx
+
+
+def path_graph():
+    """Return a path graph of length three."""
+    G = nx.path_graph(3, create_using=nx.DiGraph)
+    G.graph["name"] = "path"
+    nx.freeze(G)
+    return G
+
+
+def fork_graph():
+    """Return a three node fork graph."""
+    G = nx.DiGraph(name="fork")
+    G.add_edges_from([(0, 1), (0, 2)])
+    nx.freeze(G)
+    return G
+
+
+def collider_graph():
+    """Return a collider/v-structure graph with three nodes."""
+    G = nx.DiGraph(name="collider")
+    G.add_edges_from([(0, 2), (1, 2)])
+    nx.freeze(G)
+    return G
+
+
+def naive_bayes_graph():
+    """Return a simply Naive Bayes PGM graph."""
+    G = nx.DiGraph(name="naive_bayes")
+    G.add_edges_from([(0, 1), (0, 2), (0, 3), (0, 4)])
+    nx.freeze(G)
+    return G
+
+
+def asia_graph():
+    """Return the 'Asia' PGM graph."""
+    G = nx.DiGraph(name="asia")
+    G.add_edges_from(
+        [
+            ("asia", "tuberculosis"),
+            ("smoking", "cancer"),
+            ("smoking", "bronchitis"),
+            ("tuberculosis", "either"),
+            ("cancer", "either"),
+            ("either", "xray"),
+            ("either", "dyspnea"),
+            ("bronchitis", "dyspnea"),
+        ]
+    )
+    nx.freeze(G)
+    return G
+
+
+@pytest.fixture(name="path_graph")
+def path_graph_fixture():
+    return path_graph()
+
+
+@pytest.fixture(name="fork_graph")
+def fork_graph_fixture():
+    return fork_graph()
+
+
+@pytest.fixture(name="collider_graph")
+def collider_graph_fixture():
+    return collider_graph()
+
+
+@pytest.fixture(name="naive_bayes_graph")
+def naive_bayes_graph_fixture():
+    return naive_bayes_graph()
+
+
+@pytest.fixture(name="asia_graph")
+def asia_graph_fixture():
+    return asia_graph()
+
+
+@pytest.fixture()
+def large_collider_graph():
+    edge_list = [("A", "B"), ("C", "B"), ("B", "D"), ("D", "E"), ("B", "F"), ("G", "E")]
+    G = nx.DiGraph(edge_list)
+    return G
+
+
+@pytest.fixture()
+def chain_and_fork_graph():
+    edge_list = [("A", "B"), ("B", "C"), ("B", "D"), ("D", "C")]
+    G = nx.DiGraph(edge_list)
+    return G
+
+
+@pytest.fixture()
+def no_separating_set_graph():
+    edge_list = [("A", "B")]
+    G = nx.DiGraph(edge_list)
+    return G
+
+
+@pytest.fixture()
+def large_no_separating_set_graph():
+    edge_list = [("A", "B"), ("C", "A"), ("C", "B")]
+    G = nx.DiGraph(edge_list)
+    return G
+
+
+@pytest.fixture()
+def collider_trek_graph():
+    edge_list = [("A", "B"), ("C", "B"), ("C", "D")]
+    G = nx.DiGraph(edge_list)
+    return G
+
+
+@pytest.mark.parametrize(
+    "graph",
+    [path_graph(), fork_graph(), collider_graph(), naive_bayes_graph(), asia_graph()],
+)
+def test_markov_condition(graph):
+    """Test that the Markov condition holds for each PGM graph."""
+    for node in graph.nodes:
+        parents = set(graph.predecessors(node))
+        non_descendants = graph.nodes - nx.descendants(graph, node) - {node} - parents
+        assert nx.is_d_separator(graph, {node}, non_descendants, parents)
+
+
+def test_path_graph_dsep(path_graph):
+    """Example-based test of d-separation for path_graph."""
+    assert nx.is_d_separator(path_graph, {0}, {2}, {1})
+    assert not nx.is_d_separator(path_graph, {0}, {2}, set())
+
+
+def test_fork_graph_dsep(fork_graph):
+    """Example-based test of d-separation for fork_graph."""
+    assert nx.is_d_separator(fork_graph, {1}, {2}, {0})
+    assert not nx.is_d_separator(fork_graph, {1}, {2}, set())
+
+
+def test_collider_graph_dsep(collider_graph):
+    """Example-based test of d-separation for collider_graph."""
+    assert nx.is_d_separator(collider_graph, {0}, {1}, set())
+    assert not nx.is_d_separator(collider_graph, {0}, {1}, {2})
+
+
+def test_naive_bayes_dsep(naive_bayes_graph):
+    """Example-based test of d-separation for naive_bayes_graph."""
+    for u, v in combinations(range(1, 5), 2):
+        assert nx.is_d_separator(naive_bayes_graph, {u}, {v}, {0})
+        assert not nx.is_d_separator(naive_bayes_graph, {u}, {v}, set())
+
+
+def test_asia_graph_dsep(asia_graph):
+    """Example-based test of d-separation for asia_graph."""
+    assert nx.is_d_separator(
+        asia_graph, {"asia", "smoking"}, {"dyspnea", "xray"}, {"bronchitis", "either"}
+    )
+    assert nx.is_d_separator(
+        asia_graph, {"tuberculosis", "cancer"}, {"bronchitis"}, {"smoking", "xray"}
+    )
+
+
+def test_undirected_graphs_are_not_supported():
+    """
+    Test that undirected graphs are not supported.
+
+    d-separation and its related algorithms do not apply in
+    the case of undirected graphs.
+    """
+    g = nx.path_graph(3, nx.Graph)
+    with pytest.raises(nx.NetworkXNotImplemented):
+        nx.is_d_separator(g, {0}, {1}, {2})
+    with pytest.raises(nx.NetworkXNotImplemented):
+        nx.is_minimal_d_separator(g, {0}, {1}, {2})
+    with pytest.raises(nx.NetworkXNotImplemented):
+        nx.find_minimal_d_separator(g, {0}, {1})
+
+
+def test_cyclic_graphs_raise_error():
+    """
+    Test that cycle graphs should cause erroring.
+
+    This is because PGMs assume a directed acyclic graph.
+    """
+    g = nx.cycle_graph(3, nx.DiGraph)
+    with pytest.raises(nx.NetworkXError):
+        nx.is_d_separator(g, {0}, {1}, {2})
+    with pytest.raises(nx.NetworkXError):
+        nx.find_minimal_d_separator(g, {0}, {1})
+    with pytest.raises(nx.NetworkXError):
+        nx.is_minimal_d_separator(g, {0}, {1}, {2})
+
+
+def test_invalid_nodes_raise_error(asia_graph):
+    """
+    Test that graphs that have invalid nodes passed in raise errors.
+    """
+    # Check both set and node arguments
+    with pytest.raises(nx.NodeNotFound):
+        nx.is_d_separator(asia_graph, {0}, {1}, {2})
+    with pytest.raises(nx.NodeNotFound):
+        nx.is_d_separator(asia_graph, 0, 1, 2)
+    with pytest.raises(nx.NodeNotFound):
+        nx.is_minimal_d_separator(asia_graph, {0}, {1}, {2})
+    with pytest.raises(nx.NodeNotFound):
+        nx.is_minimal_d_separator(asia_graph, 0, 1, 2)
+    with pytest.raises(nx.NodeNotFound):
+        nx.find_minimal_d_separator(asia_graph, {0}, {1})
+    with pytest.raises(nx.NodeNotFound):
+        nx.find_minimal_d_separator(asia_graph, 0, 1)
+
+
+def test_nondisjoint_node_sets_raise_error(collider_graph):
+    """
+    Test that error is raised when node sets aren't disjoint.
+    """
+    with pytest.raises(nx.NetworkXError):
+        nx.is_d_separator(collider_graph, 0, 1, 0)
+    with pytest.raises(nx.NetworkXError):
+        nx.is_d_separator(collider_graph, 0, 2, 0)
+    with pytest.raises(nx.NetworkXError):
+        nx.is_d_separator(collider_graph, 0, 0, 1)
+    with pytest.raises(nx.NetworkXError):
+        nx.is_d_separator(collider_graph, 1, 0, 0)
+    with pytest.raises(nx.NetworkXError):
+        nx.find_minimal_d_separator(collider_graph, 0, 0)
+    with pytest.raises(nx.NetworkXError):
+        nx.find_minimal_d_separator(collider_graph, 0, 1, included=0)
+    with pytest.raises(nx.NetworkXError):
+        nx.find_minimal_d_separator(collider_graph, 1, 0, included=0)
+    with pytest.raises(nx.NetworkXError):
+        nx.is_minimal_d_separator(collider_graph, 0, 0, set())
+    with pytest.raises(nx.NetworkXError):
+        nx.is_minimal_d_separator(collider_graph, 0, 1, set(), included=0)
+    with pytest.raises(nx.NetworkXError):
+        nx.is_minimal_d_separator(collider_graph, 1, 0, set(), included=0)
+
+
+def test_is_minimal_d_separator(
+    large_collider_graph,
+    chain_and_fork_graph,
+    no_separating_set_graph,
+    large_no_separating_set_graph,
+    collider_trek_graph,
+):
+    # Case 1:
+    # create a graph A -> B <- C
+    # B -> D -> E;
+    # B -> F;
+    # G -> E;
+    assert not nx.is_d_separator(large_collider_graph, {"B"}, {"E"}, set())
+
+    # minimal set of the corresponding graph
+    # for B and E should be (D,)
+    Zmin = nx.find_minimal_d_separator(large_collider_graph, "B", "E")
+    # check that the minimal d-separator is a d-separating set
+    assert nx.is_d_separator(large_collider_graph, "B", "E", Zmin)
+    # the minimal separating set should also pass the test for minimality
+    assert nx.is_minimal_d_separator(large_collider_graph, "B", "E", Zmin)
+    # function should also work with set arguments
+    assert nx.is_minimal_d_separator(large_collider_graph, {"A", "B"}, {"G", "E"}, Zmin)
+    assert Zmin == {"D"}
+
+    # Case 2:
+    # create a graph A -> B -> C
+    # B -> D -> C;
+    assert not nx.is_d_separator(chain_and_fork_graph, {"A"}, {"C"}, set())
+    Zmin = nx.find_minimal_d_separator(chain_and_fork_graph, "A", "C")
+
+    # the minimal separating set should pass the test for minimality
+    assert nx.is_minimal_d_separator(chain_and_fork_graph, "A", "C", Zmin)
+    assert Zmin == {"B"}
+    Znotmin = Zmin.union({"D"})
+    assert not nx.is_minimal_d_separator(chain_and_fork_graph, "A", "C", Znotmin)
+
+    # Case 3:
+    # create a graph A -> B
+
+    # there is no m-separating set between A and B at all, so
+    # no minimal m-separating set can exist
+    assert not nx.is_d_separator(no_separating_set_graph, {"A"}, {"B"}, set())
+    assert nx.find_minimal_d_separator(no_separating_set_graph, "A", "B") is None
+
+    # Case 4:
+    # create a graph A -> B with A <- C -> B
+
+    # there is no m-separating set between A and B at all, so
+    # no minimal m-separating set can exist
+    # however, the algorithm will initially propose C as a
+    # minimal (but invalid) separating set
+    assert not nx.is_d_separator(large_no_separating_set_graph, {"A"}, {"B"}, {"C"})
+    assert nx.find_minimal_d_separator(large_no_separating_set_graph, "A", "B") is None
+
+    # Test `included` and `excluded` args
+    # create graph A -> B <- C -> D
+    assert nx.find_minimal_d_separator(collider_trek_graph, "A", "D", included="B") == {
+        "B",
+        "C",
+    }
+    assert (
+        nx.find_minimal_d_separator(
+            collider_trek_graph, "A", "D", included="B", restricted="B"
+        )
+        is None
+    )
+
+
+def test_is_minimal_d_separator_checks_dsep():
+    """Test that is_minimal_d_separator checks for d-separation as well."""
+    g = nx.DiGraph()
+    g.add_edges_from(
+        [
+            ("A", "B"),
+            ("A", "E"),
+            ("B", "C"),
+            ("B", "D"),
+            ("D", "C"),
+            ("D", "F"),
+            ("E", "D"),
+            ("E", "F"),
+        ]
+    )
+
+    assert not nx.is_d_separator(g, {"C"}, {"F"}, {"D"})
+
+    # since {'D'} and {} are not d-separators, we return false
+    assert not nx.is_minimal_d_separator(g, "C", "F", {"D"})
+    assert not nx.is_minimal_d_separator(g, "C", "F", set())
+
+
+def test__reachable(large_collider_graph):
+    reachable = nx.algorithms.d_separation._reachable
+    g = large_collider_graph
+    x = {"F", "D"}
+    ancestors = {"A", "B", "C", "D", "F"}
+    assert reachable(g, x, ancestors, {"B"}) == {"B", "F", "D"}
+    assert reachable(g, x, ancestors, set()) == ancestors
+
+
+def test_deprecations():
+    G = nx.DiGraph([(0, 1), (1, 2)])
+    with pytest.deprecated_call():
+        nx.d_separated(G, 0, 2, {1})
+    with pytest.deprecated_call():
+        z = nx.minimal_d_separator(G, 0, 2)

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_distance_measures.py

@@ -0,0 +1,774 @@
+import math
+from random import Random
+
+import pytest
+
+import networkx as nx
+from networkx import convert_node_labels_to_integers as cnlti
+from networkx.algorithms.distance_measures import _extrema_bounding
+
+
+def test__extrema_bounding_invalid_compute_kwarg():
+    G = nx.path_graph(3)
+    with pytest.raises(ValueError, match="compute must be one of"):
+        _extrema_bounding(G, compute="spam")
+
+
+class TestDistance:
+    def setup_method(self):
+        G = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
+        self.G = G
+
+    def test_eccentricity(self):
+        assert nx.eccentricity(self.G, 1) == 6
+        e = nx.eccentricity(self.G)
+        assert e[1] == 6
+
+        sp = dict(nx.shortest_path_length(self.G))
+        e = nx.eccentricity(self.G, sp=sp)
+        assert e[1] == 6
+
+        e = nx.eccentricity(self.G, v=1)
+        assert e == 6
+
+        # This behavior changed in version 1.8 (ticket #739)
+        e = nx.eccentricity(self.G, v=[1, 1])
+        assert e[1] == 6
+        e = nx.eccentricity(self.G, v=[1, 2])
+        assert e[1] == 6
+
+        # test against graph with one node
+        G = nx.path_graph(1)
+        e = nx.eccentricity(G)
+        assert e[0] == 0
+        e = nx.eccentricity(G, v=0)
+        assert e == 0
+        pytest.raises(nx.NetworkXError, nx.eccentricity, G, 1)
+
+        # test against empty graph
+        G = nx.empty_graph()
+        e = nx.eccentricity(G)
+        assert e == {}
+
+    def test_diameter(self):
+        assert nx.diameter(self.G) == 6
+
+    def test_harmonic_diameter(self):
+        assert abs(nx.harmonic_diameter(self.G) - 2.0477815699658715) < 1e-12
+
+    def test_harmonic_diameter_empty(self):
+        assert math.isnan(nx.harmonic_diameter(nx.empty_graph()))
+
+    def test_harmonic_diameter_single_node(self):
+        assert math.isnan(nx.harmonic_diameter(nx.empty_graph(1)))
+
+    def test_harmonic_diameter_discrete(self):
+        assert math.isinf(nx.harmonic_diameter(nx.empty_graph(3)))
+
+    def test_harmonic_diameter_not_strongly_connected(self):
+        DG = nx.DiGraph()
+        DG.add_edge(0, 1)
+        assert nx.harmonic_diameter(DG) == 2
+
+    def test_radius(self):
+        assert nx.radius(self.G) == 4
+
+    def test_periphery(self):
+        assert set(nx.periphery(self.G)) == {1, 4, 13, 16}
+
+    def test_center(self):
+        assert set(nx.center(self.G)) == {6, 7, 10, 11}
+
+    def test_bound_diameter(self):
+        assert nx.diameter(self.G, usebounds=True) == 6
+
+    def test_bound_radius(self):
+        assert nx.radius(self.G, usebounds=True) == 4
+
+    def test_bound_periphery(self):
+        result = {1, 4, 13, 16}
+        assert set(nx.periphery(self.G, usebounds=True)) == result
+
+    def test_bound_center(self):
+        result = {6, 7, 10, 11}
+        assert set(nx.center(self.G, usebounds=True)) == result
+
+    def test_radius_exception(self):
+        G = nx.Graph()
+        G.add_edge(1, 2)
+        G.add_edge(3, 4)
+        pytest.raises(nx.NetworkXError, nx.diameter, G)
+
+    def test_eccentricity_infinite(self):
+        with pytest.raises(nx.NetworkXError):
+            G = nx.Graph([(1, 2), (3, 4)])
+            e = nx.eccentricity(G)
+
+    def test_eccentricity_undirected_not_connected(self):
+        with pytest.raises(nx.NetworkXError):
+            G = nx.Graph([(1, 2), (3, 4)])
+            e = nx.eccentricity(G, sp=1)
+
+    def test_eccentricity_directed_weakly_connected(self):
+        with pytest.raises(nx.NetworkXError):
+            DG = nx.DiGraph([(1, 2), (1, 3)])
+            nx.eccentricity(DG)
+
+
+class TestWeightedDistance:
+    def setup_method(self):
+        G = nx.Graph()
+        G.add_edge(0, 1, weight=0.6, cost=0.6, high_cost=6)
+        G.add_edge(0, 2, weight=0.2, cost=0.2, high_cost=2)
+        G.add_edge(2, 3, weight=0.1, cost=0.1, high_cost=1)
+        G.add_edge(2, 4, weight=0.7, cost=0.7, high_cost=7)
+        G.add_edge(2, 5, weight=0.9, cost=0.9, high_cost=9)
+        G.add_edge(1, 5, weight=0.3, cost=0.3, high_cost=3)
+        self.G = G
+        self.weight_fn = lambda v, u, e: 2
+
+    def test_eccentricity_weight_None(self):
+        assert nx.eccentricity(self.G, 1, weight=None) == 3
+        e = nx.eccentricity(self.G, weight=None)
+        assert e[1] == 3
+
+        e = nx.eccentricity(self.G, v=1, weight=None)
+        assert e == 3
+
+        # This behavior changed in version 1.8 (ticket #739)
+        e = nx.eccentricity(self.G, v=[1, 1], weight=None)
+        assert e[1] == 3
+        e = nx.eccentricity(self.G, v=[1, 2], weight=None)
+        assert e[1] == 3
+
+    def test_eccentricity_weight_attr(self):
+        assert nx.eccentricity(self.G, 1, weight="weight") == 1.5
+        e = nx.eccentricity(self.G, weight="weight")
+        assert (
+            e
+            == nx.eccentricity(self.G, weight="cost")
+            != nx.eccentricity(self.G, weight="high_cost")
+        )
+        assert e[1] == 1.5
+
+        e = nx.eccentricity(self.G, v=1, weight="weight")
+        assert e == 1.5
+
+        # This behavior changed in version 1.8 (ticket #739)
+        e = nx.eccentricity(self.G, v=[1, 1], weight="weight")
+        assert e[1] == 1.5
+        e = nx.eccentricity(self.G, v=[1, 2], weight="weight")
+        assert e[1] == 1.5
+
+    def test_eccentricity_weight_fn(self):
+        assert nx.eccentricity(self.G, 1, weight=self.weight_fn) == 6
+        e = nx.eccentricity(self.G, weight=self.weight_fn)
+        assert e[1] == 6
+
+        e = nx.eccentricity(self.G, v=1, weight=self.weight_fn)
+        assert e == 6
+
+        # This behavior changed in version 1.8 (ticket #739)
+        e = nx.eccentricity(self.G, v=[1, 1], weight=self.weight_fn)
+        assert e[1] == 6
+        e = nx.eccentricity(self.G, v=[1, 2], weight=self.weight_fn)
+        assert e[1] == 6
+
+    def test_diameter_weight_None(self):
+        assert nx.diameter(self.G, weight=None) == 3
+
+    def test_diameter_weight_attr(self):
+        assert (
+            nx.diameter(self.G, weight="weight")
+            == nx.diameter(self.G, weight="cost")
+            == 1.6
+            != nx.diameter(self.G, weight="high_cost")
+        )
+
+    def test_diameter_weight_fn(self):
+        assert nx.diameter(self.G, weight=self.weight_fn) == 6
+
+    def test_radius_weight_None(self):
+        assert pytest.approx(nx.radius(self.G, weight=None)) == 2
+
+    def test_radius_weight_attr(self):
+        assert (
+            pytest.approx(nx.radius(self.G, weight="weight"))
+            == pytest.approx(nx.radius(self.G, weight="cost"))
+            == 0.9
+            != nx.radius(self.G, weight="high_cost")
+        )
+
+    def test_radius_weight_fn(self):
+        assert nx.radius(self.G, weight=self.weight_fn) == 4
+
+    def test_periphery_weight_None(self):
+        for v in set(nx.periphery(self.G, weight=None)):
+            assert nx.eccentricity(self.G, v, weight=None) == nx.diameter(
+                self.G, weight=None
+            )
+
+    def test_periphery_weight_attr(self):
+        periphery = set(nx.periphery(self.G, weight="weight"))
+        assert (
+            periphery
+            == set(nx.periphery(self.G, weight="cost"))
+            == set(nx.periphery(self.G, weight="high_cost"))
+        )
+        for v in periphery:
+            assert (
+                nx.eccentricity(self.G, v, weight="high_cost")
+                != nx.eccentricity(self.G, v, weight="weight")
+                == nx.eccentricity(self.G, v, weight="cost")
+                == nx.diameter(self.G, weight="weight")
+                == nx.diameter(self.G, weight="cost")
+                != nx.diameter(self.G, weight="high_cost")
+            )
+            assert nx.eccentricity(self.G, v, weight="high_cost") == nx.diameter(
+                self.G, weight="high_cost"
+            )
+
+    def test_periphery_weight_fn(self):
+        for v in set(nx.periphery(self.G, weight=self.weight_fn)):
+            assert nx.eccentricity(self.G, v, weight=self.weight_fn) == nx.diameter(
+                self.G, weight=self.weight_fn
+            )
+
+    def test_center_weight_None(self):
+        for v in set(nx.center(self.G, weight=None)):
+            assert pytest.approx(nx.eccentricity(self.G, v, weight=None)) == nx.radius(
+                self.G, weight=None
+            )
+
+    def test_center_weight_attr(self):
+        center = set(nx.center(self.G, weight="weight"))
+        assert (
+            center
+            == set(nx.center(self.G, weight="cost"))
+            != set(nx.center(self.G, weight="high_cost"))
+        )
+        for v in center:
+            assert (
+                nx.eccentricity(self.G, v, weight="high_cost")
+                != pytest.approx(nx.eccentricity(self.G, v, weight="weight"))
+                == pytest.approx(nx.eccentricity(self.G, v, weight="cost"))
+                == nx.radius(self.G, weight="weight")
+                == nx.radius(self.G, weight="cost")
+                != nx.radius(self.G, weight="high_cost")
+            )
+            assert nx.eccentricity(self.G, v, weight="high_cost") == nx.radius(
+                self.G, weight="high_cost"
+            )
+
+    def test_center_weight_fn(self):
+        for v in set(nx.center(self.G, weight=self.weight_fn)):
+            assert nx.eccentricity(self.G, v, weight=self.weight_fn) == nx.radius(
+                self.G, weight=self.weight_fn
+            )
+
+    def test_bound_diameter_weight_None(self):
+        assert nx.diameter(self.G, usebounds=True, weight=None) == 3
+
+    def test_bound_diameter_weight_attr(self):
+        assert (
+            nx.diameter(self.G, usebounds=True, weight="high_cost")
+            != nx.diameter(self.G, usebounds=True, weight="weight")
+            == nx.diameter(self.G, usebounds=True, weight="cost")
+            == 1.6
+            != nx.diameter(self.G, usebounds=True, weight="high_cost")
+        )
+        assert nx.diameter(self.G, usebounds=True, weight="high_cost") == nx.diameter(
+            self.G, usebounds=True, weight="high_cost"
+        )
+
+    def test_bound_diameter_weight_fn(self):
+        assert nx.diameter(self.G, usebounds=True, weight=self.weight_fn) == 6
+
+    def test_bound_radius_weight_None(self):
+        assert pytest.approx(nx.radius(self.G, usebounds=True, weight=None)) == 2
+
+    def test_bound_radius_weight_attr(self):
+        assert (
+            nx.radius(self.G, usebounds=True, weight="high_cost")
+            != pytest.approx(nx.radius(self.G, usebounds=True, weight="weight"))
+            == pytest.approx(nx.radius(self.G, usebounds=True, weight="cost"))
+            == 0.9
+            != nx.radius(self.G, usebounds=True, weight="high_cost")
+        )
+        assert nx.radius(self.G, usebounds=True, weight="high_cost") == nx.radius(
+            self.G, usebounds=True, weight="high_cost"
+        )
+
+    def test_bound_radius_weight_fn(self):
+        assert nx.radius(self.G, usebounds=True, weight=self.weight_fn) == 4
+
+    def test_bound_periphery_weight_None(self):
+        result = {1, 3, 4}
+        assert set(nx.periphery(self.G, usebounds=True, weight=None)) == result
+
+    def test_bound_periphery_weight_attr(self):
+        result = {4, 5}
+        assert (
+            set(nx.periphery(self.G, usebounds=True, weight="weight"))
+            == set(nx.periphery(self.G, usebounds=True, weight="cost"))
+            == result
+        )
+
+    def test_bound_periphery_weight_fn(self):
+        result = {1, 3, 4}
+        assert (
+            set(nx.periphery(self.G, usebounds=True, weight=self.weight_fn)) == result
+        )
+
+    def test_bound_center_weight_None(self):
+        result = {0, 2, 5}
+        assert set(nx.center(self.G, usebounds=True, weight=None)) == result
+
+    def test_bound_center_weight_attr(self):
+        result = {0}
+        assert (
+            set(nx.center(self.G, usebounds=True, weight="weight"))
+            == set(nx.center(self.G, usebounds=True, weight="cost"))
+            == result
+        )
+
+    def test_bound_center_weight_fn(self):
+        result = {0, 2, 5}
+        assert set(nx.center(self.G, usebounds=True, weight=self.weight_fn)) == result
+
+
+class TestResistanceDistance:
+    @classmethod
+    def setup_class(cls):
+        global np
+        np = pytest.importorskip("numpy")
+        sp = pytest.importorskip("scipy")
+
+    def setup_method(self):
+        G = nx.Graph()
+        G.add_edge(1, 2, weight=2)
+        G.add_edge(2, 3, weight=4)
+        G.add_edge(3, 4, weight=1)
+        G.add_edge(1, 4, weight=3)
+        self.G = G
+
+    def test_resistance_distance_directed_graph(self):
+        G = nx.DiGraph()
+        with pytest.raises(nx.NetworkXNotImplemented):
+            nx.resistance_distance(G)
+
+    def test_resistance_distance_empty(self):
+        G = nx.Graph()
+        with pytest.raises(nx.NetworkXError):
+            nx.resistance_distance(G)
+
+    def test_resistance_distance_not_connected(self):
+        with pytest.raises(nx.NetworkXError):
+            self.G.add_node(5)
+            nx.resistance_distance(self.G, 1, 5)
+
+    def test_resistance_distance_nodeA_not_in_graph(self):
+        with pytest.raises(nx.NetworkXError):
+            nx.resistance_distance(self.G, 9, 1)
+
+    def test_resistance_distance_nodeB_not_in_graph(self):
+        with pytest.raises(nx.NetworkXError):
+            nx.resistance_distance(self.G, 1, 9)
+
+    def test_resistance_distance(self):
+        rd = nx.resistance_distance(self.G, 1, 3, "weight", True)
+        test_data = 1 / (1 / (2 + 4) + 1 / (1 + 3))
+        assert round(rd, 5) == round(test_data, 5)
+
+    def test_resistance_distance_noinv(self):
+        rd = nx.resistance_distance(self.G, 1, 3, "weight", False)
+        test_data = 1 / (1 / (1 / 2 + 1 / 4) + 1 / (1 / 1 + 1 / 3))
+        assert round(rd, 5) == round(test_data, 5)
+
+    def test_resistance_distance_no_weight(self):
+        rd = nx.resistance_distance(self.G, 1, 3)
+        assert round(rd, 5) == 1
+
+    def test_resistance_distance_neg_weight(self):
+        self.G[2][3]["weight"] = -4
+        rd = nx.resistance_distance(self.G, 1, 3, "weight", True)
+        test_data = 1 / (1 / (2 + -4) + 1 / (1 + 3))
+        assert round(rd, 5) == round(test_data, 5)
+
+    def test_multigraph(self):
+        G = nx.MultiGraph()
+        G.add_edge(1, 2, weight=2)
+        G.add_edge(2, 3, weight=4)
+        G.add_edge(3, 4, weight=1)
+        G.add_edge(1, 4, weight=3)
+        rd = nx.resistance_distance(G, 1, 3, "weight", True)
+        assert np.isclose(rd, 1 / (1 / (2 + 4) + 1 / (1 + 3)))
+
+    def test_resistance_distance_div0(self):
+        with pytest.raises(ZeroDivisionError):
+            self.G[1][2]["weight"] = 0
+            nx.resistance_distance(self.G, 1, 3, "weight")
+
+    def test_resistance_distance_same_node(self):
+        assert nx.resistance_distance(self.G, 1, 1) == 0
+
+    def test_resistance_distance_only_nodeA(self):
+        rd = nx.resistance_distance(self.G, nodeA=1)
+        test_data = {}
+        test_data[1] = 0
+        test_data[2] = 0.75
+        test_data[3] = 1
+        test_data[4] = 0.75
+        assert type(rd) == dict
+        assert sorted(rd.keys()) == sorted(test_data.keys())
+        for key in rd:
+            assert np.isclose(rd[key], test_data[key])
+
+    def test_resistance_distance_only_nodeB(self):
+        rd = nx.resistance_distance(self.G, nodeB=1)
+        test_data = {}
+        test_data[1] = 0
+        test_data[2] = 0.75
+        test_data[3] = 1
+        test_data[4] = 0.75
+        assert type(rd) == dict
+        assert sorted(rd.keys()) == sorted(test_data.keys())
+        for key in rd:
+            assert np.isclose(rd[key], test_data[key])
+
+    def test_resistance_distance_all(self):
+        rd = nx.resistance_distance(self.G)
+        assert type(rd) == dict
+        assert round(rd[1][3], 5) == 1
+
+
+class TestEffectiveGraphResistance:
+    @classmethod
+    def setup_class(cls):
+        global np
+        np = pytest.importorskip("numpy")
+        sp = pytest.importorskip("scipy")
+
+    def setup_method(self):
+        G = nx.Graph()
+        G.add_edge(1, 2, weight=2)
+        G.add_edge(1, 3, weight=1)
+        G.add_edge(2, 3, weight=4)
+        self.G = G
+
+    def test_effective_graph_resistance_directed_graph(self):
+        G = nx.DiGraph()
+        with pytest.raises(nx.NetworkXNotImplemented):
+            nx.effective_graph_resistance(G)
+
+    def test_effective_graph_resistance_empty(self):
+        G = nx.Graph()
+        with pytest.raises(nx.NetworkXError):
+            nx.effective_graph_resistance(G)
+
+    def test_effective_graph_resistance_not_connected(self):
+        G = nx.Graph([(1, 2), (3, 4)])
+        RG = nx.effective_graph_resistance(G)
+        assert np.isinf(RG)
+
+    def test_effective_graph_resistance(self):
+        RG = nx.effective_graph_resistance(self.G, "weight", True)
+        rd12 = 1 / (1 / (1 + 4) + 1 / 2)
+        rd13 = 1 / (1 / (1 + 2) + 1 / 4)
+        rd23 = 1 / (1 / (2 + 4) + 1 / 1)
+        assert np.isclose(RG, rd12 + rd13 + rd23)
+
+    def test_effective_graph_resistance_noinv(self):
+        RG = nx.effective_graph_resistance(self.G, "weight", False)
+        rd12 = 1 / (1 / (1 / 1 + 1 / 4) + 1 / (1 / 2))
+        rd13 = 1 / (1 / (1 / 1 + 1 / 2) + 1 / (1 / 4))
+        rd23 = 1 / (1 / (1 / 2 + 1 / 4) + 1 / (1 / 1))
+        assert np.isclose(RG, rd12 + rd13 + rd23)
+
+    def test_effective_graph_resistance_no_weight(self):
+        RG = nx.effective_graph_resistance(self.G)
+        assert np.isclose(RG, 2)
+
+    def test_effective_graph_resistance_neg_weight(self):
+        self.G[2][3]["weight"] = -4
+        RG = nx.effective_graph_resistance(self.G, "weight", True)
+        rd12 = 1 / (1 / (1 + -4) + 1 / 2)
+        rd13 = 1 / (1 / (1 + 2) + 1 / (-4))
+        rd23 = 1 / (1 / (2 + -4) + 1 / 1)
+        assert np.isclose(RG, rd12 + rd13 + rd23)
+
+    def test_effective_graph_resistance_multigraph(self):
+        G = nx.MultiGraph()
+        G.add_edge(1, 2, weight=2)
+        G.add_edge(1, 3, weight=1)
+        G.add_edge(2, 3, weight=1)
+        G.add_edge(2, 3, weight=3)
+        RG = nx.effective_graph_resistance(G, "weight", True)
+        edge23 = 1 / (1 / 1 + 1 / 3)
+        rd12 = 1 / (1 / (1 + edge23) + 1 / 2)
+        rd13 = 1 / (1 / (1 + 2) + 1 / edge23)
+        rd23 = 1 / (1 / (2 + edge23) + 1 / 1)
+        assert np.isclose(RG, rd12 + rd13 + rd23)
+
+    def test_effective_graph_resistance_div0(self):
+        with pytest.raises(ZeroDivisionError):
+            self.G[1][2]["weight"] = 0
+            nx.effective_graph_resistance(self.G, "weight")
+
+    def test_effective_graph_resistance_complete_graph(self):
+        N = 10
+        G = nx.complete_graph(N)
+        RG = nx.effective_graph_resistance(G)
+        assert np.isclose(RG, N - 1)
+
+    def test_effective_graph_resistance_path_graph(self):
+        N = 10
+        G = nx.path_graph(N)
+        RG = nx.effective_graph_resistance(G)
+        assert np.isclose(RG, (N - 1) * N * (N + 1) // 6)
+
+
+class TestBarycenter:
+    """Test :func:`networkx.algorithms.distance_measures.barycenter`."""
+
+    def barycenter_as_subgraph(self, g, **kwargs):
+        """Return the subgraph induced on the barycenter of g"""
+        b = nx.barycenter(g, **kwargs)
+        assert isinstance(b, list)
+        assert set(b) <= set(g)
+        return g.subgraph(b)
+
+    def test_must_be_connected(self):
+        pytest.raises(nx.NetworkXNoPath, nx.barycenter, nx.empty_graph(5))
+
+    def test_sp_kwarg(self):
+        # Complete graph K_5. Normally it works...
+        K_5 = nx.complete_graph(5)
+        sp = dict(nx.shortest_path_length(K_5))
+        assert nx.barycenter(K_5, sp=sp) == list(K_5)
+
+        # ...but not with the weight argument
+        for u, v, data in K_5.edges.data():
+            data["weight"] = 1
+        pytest.raises(ValueError, nx.barycenter, K_5, sp=sp, weight="weight")
+
+        # ...and a corrupted sp can make it seem like K_5 is disconnected
+        del sp[0][1]
+        pytest.raises(nx.NetworkXNoPath, nx.barycenter, K_5, sp=sp)
+
+    def test_trees(self):
+        """The barycenter of a tree is a single vertex or an edge.
+
+        See [West01]_, p. 78.
+        """
+        prng = Random(0xDEADBEEF)
+        for i in range(50):
+            RT = nx.random_labeled_tree(prng.randint(1, 75), seed=prng)
+            b = self.barycenter_as_subgraph(RT)
+            if len(b) == 2:
+                assert b.size() == 1
+            else:
+                assert len(b) == 1
+                assert b.size() == 0
+
+    def test_this_one_specific_tree(self):
+        """Test the tree pictured at the bottom of [West01]_, p. 78."""
+        g = nx.Graph(
+            {
+                "a": ["b"],
+                "b": ["a", "x"],
+                "x": ["b", "y"],
+                "y": ["x", "z"],
+                "z": ["y", 0, 1, 2, 3, 4],
+                0: ["z"],
+                1: ["z"],
+                2: ["z"],
+                3: ["z"],
+                4: ["z"],
+            }
+        )
+        b = self.barycenter_as_subgraph(g, attr="barycentricity")
+        assert list(b) == ["z"]
+        assert not b.edges
+        expected_barycentricity = {
+            0: 23,
+            1: 23,
+            2: 23,
+            3: 23,
+            4: 23,
+            "a": 35,
+            "b": 27,
+            "x": 21,
+            "y": 17,
+            "z": 15,
+        }
+        for node, barycentricity in expected_barycentricity.items():
+            assert g.nodes[node]["barycentricity"] == barycentricity
+
+        # Doubling weights should do nothing but double the barycentricities
+        for edge in g.edges:
+            g.edges[edge]["weight"] = 2
+        b = self.barycenter_as_subgraph(g, weight="weight", attr="barycentricity2")
+        assert list(b) == ["z"]
+        assert not b.edges
+        for node, barycentricity in expected_barycentricity.items():
+            assert g.nodes[node]["barycentricity2"] == barycentricity * 2
+
+
+class TestKemenyConstant:
+    @classmethod
+    def setup_class(cls):
+        global np
+        np = pytest.importorskip("numpy")
+        sp = pytest.importorskip("scipy")
+
+    def setup_method(self):
+        G = nx.Graph()
+        w12 = 2
+        w13 = 3
+        w23 = 4
+        G.add_edge(1, 2, weight=w12)
+        G.add_edge(1, 3, weight=w13)
+        G.add_edge(2, 3, weight=w23)
+        self.G = G
+
+    def test_kemeny_constant_directed(self):
+        G = nx.DiGraph()
+        G.add_edge(1, 2)
+        G.add_edge(1, 3)
+        G.add_edge(2, 3)
+        with pytest.raises(nx.NetworkXNotImplemented):
+            nx.kemeny_constant(G)
+
+    def test_kemeny_constant_not_connected(self):
+        self.G.add_node(5)
+        with pytest.raises(nx.NetworkXError):
+            nx.kemeny_constant(self.G)
+
+    def test_kemeny_constant_no_nodes(self):
+        G = nx.Graph()
+        with pytest.raises(nx.NetworkXError):
+            nx.kemeny_constant(G)
+
+    def test_kemeny_constant_negative_weight(self):
+        G = nx.Graph()
+        w12 = 2
+        w13 = 3
+        w23 = -10
+        G.add_edge(1, 2, weight=w12)
+        G.add_edge(1, 3, weight=w13)
+        G.add_edge(2, 3, weight=w23)
+        with pytest.raises(nx.NetworkXError):
+            nx.kemeny_constant(G, weight="weight")
+
+    def test_kemeny_constant(self):
+        K = nx.kemeny_constant(self.G, weight="weight")
+        w12 = 2
+        w13 = 3
+        w23 = 4
+        test_data = (
+            3
+            / 2
+            * (w12 + w13)
+            * (w12 + w23)
+            * (w13 + w23)
+            / (
+                w12**2 * (w13 + w23)
+                + w13**2 * (w12 + w23)
+                + w23**2 * (w12 + w13)
+                + 3 * w12 * w13 * w23
+            )
+        )
+        assert np.isclose(K, test_data)
+
+    def test_kemeny_constant_no_weight(self):
+        K = nx.kemeny_constant(self.G)
+        assert np.isclose(K, 4 / 3)
+
+    def test_kemeny_constant_multigraph(self):
+        G = nx.MultiGraph()
+        w12_1 = 2
+        w12_2 = 1
+        w13 = 3
+        w23 = 4
+        G.add_edge(1, 2, weight=w12_1)
+        G.add_edge(1, 2, weight=w12_2)
+        G.add_edge(1, 3, weight=w13)
+        G.add_edge(2, 3, weight=w23)
+        K = nx.kemeny_constant(G, weight="weight")
+        w12 = w12_1 + w12_2
+        test_data = (
+            3
+            / 2
+            * (w12 + w13)
+            * (w12 + w23)
+            * (w13 + w23)
+            / (
+                w12**2 * (w13 + w23)
+                + w13**2 * (w12 + w23)
+                + w23**2 * (w12 + w13)
+                + 3 * w12 * w13 * w23
+            )
+        )
+        assert np.isclose(K, test_data)
+
+    def test_kemeny_constant_weight0(self):
+        G = nx.Graph()
+        w12 = 0
+        w13 = 3
+        w23 = 4
+        G.add_edge(1, 2, weight=w12)
+        G.add_edge(1, 3, weight=w13)
+        G.add_edge(2, 3, weight=w23)
+        K = nx.kemeny_constant(G, weight="weight")
+        test_data = (
+            3
+            / 2
+            * (w12 + w13)
+            * (w12 + w23)
+            * (w13 + w23)
+            / (
+                w12**2 * (w13 + w23)
+                + w13**2 * (w12 + w23)
+                + w23**2 * (w12 + w13)
+                + 3 * w12 * w13 * w23
+            )
+        )
+        assert np.isclose(K, test_data)
+
+    def test_kemeny_constant_selfloop(self):
+        G = nx.Graph()
+        w11 = 1
+        w12 = 2
+        w13 = 3
+        w23 = 4
+        G.add_edge(1, 1, weight=w11)
+        G.add_edge(1, 2, weight=w12)
+        G.add_edge(1, 3, weight=w13)
+        G.add_edge(2, 3, weight=w23)
+        K = nx.kemeny_constant(G, weight="weight")
+        test_data = (
+            (2 * w11 + 3 * w12 + 3 * w13)
+            * (w12 + w23)
+            * (w13 + w23)
+            / (
+                (w12 * w13 + w12 * w23 + w13 * w23)
+                * (w11 + 2 * w12 + 2 * w13 + 2 * w23)
+            )
+        )
+        assert np.isclose(K, test_data)
+
+    def test_kemeny_constant_complete_bipartite_graph(self):
+        # Theorem 1 in https://www.sciencedirect.com/science/article/pii/S0166218X20302912
+        n1 = 5
+        n2 = 4
+        G = nx.complete_bipartite_graph(n1, n2)
+        K = nx.kemeny_constant(G)
+        assert np.isclose(K, n1 + n2 - 3 / 2)
+
+    def test_kemeny_constant_path_graph(self):
+        # Theorem 2 in https://www.sciencedirect.com/science/article/pii/S0166218X20302912
+        n = 10
+        G = nx.path_graph(n)
+        K = nx.kemeny_constant(G)
+        assert np.isclose(K, n**2 / 3 - 2 * n / 3 + 1 / 2)

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_dominance.py

@@ -0,0 +1,286 @@
+import pytest
+
+import networkx as nx
+
+
+class TestImmediateDominators:
+    def test_exceptions(self):
+        G = nx.Graph()
+        G.add_node(0)
+        pytest.raises(nx.NetworkXNotImplemented, nx.immediate_dominators, G, 0)
+        G = nx.MultiGraph(G)
+        pytest.raises(nx.NetworkXNotImplemented, nx.immediate_dominators, G, 0)
+        G = nx.DiGraph([[0, 0]])
+        pytest.raises(nx.NetworkXError, nx.immediate_dominators, G, 1)
+
+    def test_singleton(self):
+        G = nx.DiGraph()
+        G.add_node(0)
+        assert nx.immediate_dominators(G, 0) == {0: 0}
+        G.add_edge(0, 0)
+        assert nx.immediate_dominators(G, 0) == {0: 0}
+
+    def test_path(self):
+        n = 5
+        G = nx.path_graph(n, create_using=nx.DiGraph())
+        assert nx.immediate_dominators(G, 0) == {i: max(i - 1, 0) for i in range(n)}
+
+    def test_cycle(self):
+        n = 5
+        G = nx.cycle_graph(n, create_using=nx.DiGraph())
+        assert nx.immediate_dominators(G, 0) == {i: max(i - 1, 0) for i in range(n)}
+
+    def test_unreachable(self):
+        n = 5
+        assert n > 1
+        G = nx.path_graph(n, create_using=nx.DiGraph())
+        assert nx.immediate_dominators(G, n // 2) == {
+            i: max(i - 1, n // 2) for i in range(n // 2, n)
+        }
+
+    def test_irreducible1(self):
+        """
+        Graph taken from figure 2 of "A simple, fast dominance algorithm." (2006).
+        https://hdl.handle.net/1911/96345
+        """
+        edges = [(1, 2), (2, 1), (3, 2), (4, 1), (5, 3), (5, 4)]
+        G = nx.DiGraph(edges)
+        assert nx.immediate_dominators(G, 5) == {i: 5 for i in range(1, 6)}
+
+    def test_irreducible2(self):
+        """
+        Graph taken from figure 4 of "A simple, fast dominance algorithm." (2006).
+        https://hdl.handle.net/1911/96345
+        """
+
+        edges = [(1, 2), (2, 1), (2, 3), (3, 2), (4, 2), (4, 3), (5, 1), (6, 4), (6, 5)]
+        G = nx.DiGraph(edges)
+        result = nx.immediate_dominators(G, 6)
+        assert result == {i: 6 for i in range(1, 7)}
+
+    def test_domrel_png(self):
+        # Graph taken from https://commons.wikipedia.org/wiki/File:Domrel.png
+        edges = [(1, 2), (2, 3), (2, 4), (2, 6), (3, 5), (4, 5), (5, 2)]
+        G = nx.DiGraph(edges)
+        result = nx.immediate_dominators(G, 1)
+        assert result == {1: 1, 2: 1, 3: 2, 4: 2, 5: 2, 6: 2}
+        # Test postdominance.
+        result = nx.immediate_dominators(G.reverse(copy=False), 6)
+        assert result == {1: 2, 2: 6, 3: 5, 4: 5, 5: 2, 6: 6}
+
+    def test_boost_example(self):
+        # Graph taken from Figure 1 of
+        # http://www.boost.org/doc/libs/1_56_0/libs/graph/doc/lengauer_tarjan_dominator.htm
+        edges = [(0, 1), (1, 2), (1, 3), (2, 7), (3, 4), (4, 5), (4, 6), (5, 7), (6, 4)]
+        G = nx.DiGraph(edges)
+        result = nx.immediate_dominators(G, 0)
+        assert result == {0: 0, 1: 0, 2: 1, 3: 1, 4: 3, 5: 4, 6: 4, 7: 1}
+        # Test postdominance.
+        result = nx.immediate_dominators(G.reverse(copy=False), 7)
+        assert result == {0: 1, 1: 7, 2: 7, 3: 4, 4: 5, 5: 7, 6: 4, 7: 7}
+
+
+class TestDominanceFrontiers:
+    def test_exceptions(self):
+        G = nx.Graph()
+        G.add_node(0)
+        pytest.raises(nx.NetworkXNotImplemented, nx.dominance_frontiers, G, 0)
+        G = nx.MultiGraph(G)
+        pytest.raises(nx.NetworkXNotImplemented, nx.dominance_frontiers, G, 0)
+        G = nx.DiGraph([[0, 0]])
+        pytest.raises(nx.NetworkXError, nx.dominance_frontiers, G, 1)
+
+    def test_singleton(self):
+        G = nx.DiGraph()
+        G.add_node(0)
+        assert nx.dominance_frontiers(G, 0) == {0: set()}
+        G.add_edge(0, 0)
+        assert nx.dominance_frontiers(G, 0) == {0: set()}
+
+    def test_path(self):
+        n = 5
+        G = nx.path_graph(n, create_using=nx.DiGraph())
+        assert nx.dominance_frontiers(G, 0) == {i: set() for i in range(n)}
+
+    def test_cycle(self):
+        n = 5
+        G = nx.cycle_graph(n, create_using=nx.DiGraph())
+        assert nx.dominance_frontiers(G, 0) == {i: set() for i in range(n)}
+
+    def test_unreachable(self):
+        n = 5
+        assert n > 1
+        G = nx.path_graph(n, create_using=nx.DiGraph())
+        assert nx.dominance_frontiers(G, n // 2) == {i: set() for i in range(n // 2, n)}
+
+    def test_irreducible1(self):
+        """
+        Graph taken from figure 2 of "A simple, fast dominance algorithm." (2006).
+        https://hdl.handle.net/1911/96345
+        """
+        edges = [(1, 2), (2, 1), (3, 2), (4, 1), (5, 3), (5, 4)]
+        G = nx.DiGraph(edges)
+        assert dict(nx.dominance_frontiers(G, 5).items()) == {
+            1: {2},
+            2: {1},
+            3: {2},
+            4: {1},
+            5: set(),
+        }
+
+    def test_irreducible2(self):
+        """
+        Graph taken from figure 4 of "A simple, fast dominance algorithm." (2006).
+        https://hdl.handle.net/1911/96345
+        """
+        edges = [(1, 2), (2, 1), (2, 3), (3, 2), (4, 2), (4, 3), (5, 1), (6, 4), (6, 5)]
+        G = nx.DiGraph(edges)
+        assert nx.dominance_frontiers(G, 6) == {
+            1: {2},
+            2: {1, 3},
+            3: {2},
+            4: {2, 3},
+            5: {1},
+            6: set(),
+        }
+
+    def test_domrel_png(self):
+        # Graph taken from https://commons.wikipedia.org/wiki/File:Domrel.png
+        edges = [(1, 2), (2, 3), (2, 4), (2, 6), (3, 5), (4, 5), (5, 2)]
+        G = nx.DiGraph(edges)
+        assert nx.dominance_frontiers(G, 1) == {
+            1: set(),
+            2: {2},
+            3: {5},
+            4: {5},
+            5: {2},
+            6: set(),
+        }
+        # Test postdominance.
+        result = nx.dominance_frontiers(G.reverse(copy=False), 6)
+        assert result == {1: set(), 2: {2}, 3: {2}, 4: {2}, 5: {2}, 6: set()}
+
+    def test_boost_example(self):
+        # Graph taken from Figure 1 of
+        # http://www.boost.org/doc/libs/1_56_0/libs/graph/doc/lengauer_tarjan_dominator.htm
+        edges = [(0, 1), (1, 2), (1, 3), (2, 7), (3, 4), (4, 5), (4, 6), (5, 7), (6, 4)]
+        G = nx.DiGraph(edges)
+        assert nx.dominance_frontiers(G, 0) == {
+            0: set(),
+            1: set(),
+            2: {7},
+            3: {7},
+            4: {4, 7},
+            5: {7},
+            6: {4},
+            7: set(),
+        }
+        # Test postdominance.
+        result = nx.dominance_frontiers(G.reverse(copy=False), 7)
+        expected = {
+            0: set(),
+            1: set(),
+            2: {1},
+            3: {1},
+            4: {1, 4},
+            5: {1},
+            6: {4},
+            7: set(),
+        }
+        assert result == expected
+
+    def test_discard_issue(self):
+        # https://github.com/networkx/networkx/issues/2071
+        g = nx.DiGraph()
+        g.add_edges_from(
+            [
+                ("b0", "b1"),
+                ("b1", "b2"),
+                ("b2", "b3"),
+                ("b3", "b1"),
+                ("b1", "b5"),
+                ("b5", "b6"),
+                ("b5", "b8"),
+                ("b6", "b7"),
+                ("b8", "b7"),
+                ("b7", "b3"),
+                ("b3", "b4"),
+            ]
+        )
+        df = nx.dominance_frontiers(g, "b0")
+        assert df == {
+            "b4": set(),
+            "b5": {"b3"},
+            "b6": {"b7"},
+            "b7": {"b3"},
+            "b0": set(),
+            "b1": {"b1"},
+            "b2": {"b3"},
+            "b3": {"b1"},
+            "b8": {"b7"},
+        }
+
+    def test_loop(self):
+        g = nx.DiGraph()
+        g.add_edges_from([("a", "b"), ("b", "c"), ("b", "a")])
+        df = nx.dominance_frontiers(g, "a")
+        assert df == {"a": set(), "b": set(), "c": set()}
+
+    def test_missing_immediate_doms(self):
+        # see https://github.com/networkx/networkx/issues/2070
+        g = nx.DiGraph()
+        edges = [
+            ("entry_1", "b1"),
+            ("b1", "b2"),
+            ("b2", "b3"),
+            ("b3", "exit"),
+            ("entry_2", "b3"),
+        ]
+
+        # entry_1
+        #   |
+        #   b1
+        #   |
+        #   b2  entry_2
+        #    |  /
+        #    b3
+        #    |
+        #   exit
+
+        g.add_edges_from(edges)
+        # formerly raised KeyError on entry_2 when parsing b3
+        # because entry_2 does not have immediate doms (no path)
+        nx.dominance_frontiers(g, "entry_1")
+
+    def test_loops_larger(self):
+        # from
+        # http://ecee.colorado.edu/~waite/Darmstadt/motion.html
+        g = nx.DiGraph()
+        edges = [
+            ("entry", "exit"),
+            ("entry", "1"),
+            ("1", "2"),
+            ("2", "3"),
+            ("3", "4"),
+            ("4", "5"),
+            ("5", "6"),
+            ("6", "exit"),
+            ("6", "2"),
+            ("5", "3"),
+            ("4", "4"),
+        ]
+
+        g.add_edges_from(edges)
+        df = nx.dominance_frontiers(g, "entry")
+        answer = {
+            "entry": set(),
+            "1": {"exit"},
+            "2": {"exit", "2"},
+            "3": {"exit", "3", "2"},
+            "4": {"exit", "4", "3", "2"},
+            "5": {"exit", "3", "2"},
+            "6": {"exit", "2"},
+            "exit": set(),
+        }
+        for n in df:
+            assert set(df[n]) == set(answer[n])

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_dominating.py

@@ -0,0 +1,46 @@
+import pytest
+
+import networkx as nx
+
+
+def test_dominating_set():
+    G = nx.gnp_random_graph(100, 0.1)
+    D = nx.dominating_set(G)
+    assert nx.is_dominating_set(G, D)
+    D = nx.dominating_set(G, start_with=0)
+    assert nx.is_dominating_set(G, D)
+
+
+def test_complete():
+    """In complete graphs each node is a dominating set.
+    Thus the dominating set has to be of cardinality 1.
+    """
+    K4 = nx.complete_graph(4)
+    assert len(nx.dominating_set(K4)) == 1
+    K5 = nx.complete_graph(5)
+    assert len(nx.dominating_set(K5)) == 1
+
+
+def test_raise_dominating_set():
+    with pytest.raises(nx.NetworkXError):
+        G = nx.path_graph(4)
+        D = nx.dominating_set(G, start_with=10)
+
+
+def test_is_dominating_set():
+    G = nx.path_graph(4)
+    d = {1, 3}
+    assert nx.is_dominating_set(G, d)
+    d = {0, 2}
+    assert nx.is_dominating_set(G, d)
+    d = {1}
+    assert not nx.is_dominating_set(G, d)
+
+
+def test_wikipedia_is_dominating_set():
+    """Example from https://en.wikipedia.org/wiki/Dominating_set"""
+    G = nx.cycle_graph(4)
+    G.add_edges_from([(0, 4), (1, 4), (2, 5)])
+    assert nx.is_dominating_set(G, {4, 3, 5})
+    assert nx.is_dominating_set(G, {0, 2})
+    assert nx.is_dominating_set(G, {1, 2})

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_efficiency.py

@@ -0,0 +1,58 @@
+"""Unit tests for the :mod:`networkx.algorithms.efficiency` module."""
+
+import networkx as nx
+
+
+class TestEfficiency:
+    def setup_method(self):
+        # G1 is a disconnected graph
+        self.G1 = nx.Graph()
+        self.G1.add_nodes_from([1, 2, 3])
+        # G2 is a cycle graph
+        self.G2 = nx.cycle_graph(4)
+        # G3 is the triangle graph with one additional edge
+        self.G3 = nx.lollipop_graph(3, 1)
+
+    def test_efficiency_disconnected_nodes(self):
+        """
+        When nodes are disconnected, efficiency is 0
+        """
+        assert nx.efficiency(self.G1, 1, 2) == 0
+
+    def test_local_efficiency_disconnected_graph(self):
+        """
+        In a disconnected graph the efficiency is 0
+        """
+        assert nx.local_efficiency(self.G1) == 0
+
+    def test_efficiency(self):
+        assert nx.efficiency(self.G2, 0, 1) == 1
+        assert nx.efficiency(self.G2, 0, 2) == 1 / 2
+
+    def test_global_efficiency(self):
+        assert nx.global_efficiency(self.G2) == 5 / 6
+
+    def test_global_efficiency_complete_graph(self):
+        """
+        Tests that the average global efficiency of the complete graph is one.
+        """
+        for n in range(2, 10):
+            G = nx.complete_graph(n)
+            assert nx.global_efficiency(G) == 1
+
+    def test_local_efficiency_complete_graph(self):
+        """
+        Test that the local efficiency for a complete graph with at least 3
+        nodes should be one. For a graph with only 2 nodes, the induced
+        subgraph has no edges.
+        """
+        for n in range(3, 10):
+            G = nx.complete_graph(n)
+            assert nx.local_efficiency(G) == 1
+
+    def test_using_ego_graph(self):
+        """
+        Test that the ego graph is used when computing local efficiency.
+        For more information, see GitHub issue #2710.
+        """
+        assert nx.local_efficiency(self.G3) == 7 / 12

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_graph_hashing.py

@@ -0,0 +1,686 @@
+import pytest
+
+import networkx as nx
+from networkx.generators import directed
+
+# Unit tests for the :func:`~networkx.weisfeiler_lehman_graph_hash` function
+
+
+def test_empty_graph_hash():
+    """
+    empty graphs should give hashes regardless of other params
+    """
+    G1 = nx.empty_graph()
+    G2 = nx.empty_graph()
+
+    h1 = nx.weisfeiler_lehman_graph_hash(G1)
+    h2 = nx.weisfeiler_lehman_graph_hash(G2)
+    h3 = nx.weisfeiler_lehman_graph_hash(G2, edge_attr="edge_attr1")
+    h4 = nx.weisfeiler_lehman_graph_hash(G2, node_attr="node_attr1")
+    h5 = nx.weisfeiler_lehman_graph_hash(
+        G2, edge_attr="edge_attr1", node_attr="node_attr1"
+    )
+    h6 = nx.weisfeiler_lehman_graph_hash(G2, iterations=10)
+
+    assert h1 == h2
+    assert h1 == h3
+    assert h1 == h4
+    assert h1 == h5
+    assert h1 == h6
+
+
+def test_directed():
+    """
+    A directed graph with no bi-directional edges should yield different a graph hash
+    to the same graph taken as undirected if there are no hash collisions.
+    """
+    r = 10
+    for i in range(r):
+        G_directed = nx.gn_graph(10 + r, seed=100 + i)
+        G_undirected = nx.to_undirected(G_directed)
+
+        h_directed = nx.weisfeiler_lehman_graph_hash(G_directed)
+        h_undirected = nx.weisfeiler_lehman_graph_hash(G_undirected)
+
+        assert h_directed != h_undirected
+
+
+def test_reversed():
+    """
+    A directed graph with no bi-directional edges should yield different a graph hash
+    to the same graph taken with edge directions reversed if there are no hash collisions.
+    Here we test a cycle graph which is the minimal counterexample
+    """
+    G = nx.cycle_graph(5, create_using=nx.DiGraph)
+    nx.set_node_attributes(G, {n: str(n) for n in G.nodes()}, name="label")
+
+    G_reversed = G.reverse()
+
+    h = nx.weisfeiler_lehman_graph_hash(G, node_attr="label")
+    h_reversed = nx.weisfeiler_lehman_graph_hash(G_reversed, node_attr="label")
+
+    assert h != h_reversed
+
+
+def test_isomorphic():
+    """
+    graph hashes should be invariant to node-relabeling (when the output is reindexed
+    by the same mapping)
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G1 = nx.erdos_renyi_graph(n, p * i, seed=200 + i)
+        G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
+
+        g1_hash = nx.weisfeiler_lehman_graph_hash(G1)
+        g2_hash = nx.weisfeiler_lehman_graph_hash(G2)
+
+        assert g1_hash == g2_hash
+
+
+def test_isomorphic_edge_attr():
+    """
+    Isomorphic graphs with differing edge attributes should yield different graph
+    hashes if the 'edge_attr' argument is supplied and populated in the graph,
+    and there are no hash collisions.
+    The output should still be invariant to node-relabeling
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G1 = nx.erdos_renyi_graph(n, p * i, seed=300 + i)
+
+        for a, b in G1.edges:
+            G1[a][b]["edge_attr1"] = f"{a}-{b}-1"
+            G1[a][b]["edge_attr2"] = f"{a}-{b}-2"
+
+        g1_hash_with_edge_attr1 = nx.weisfeiler_lehman_graph_hash(
+            G1, edge_attr="edge_attr1"
+        )
+        g1_hash_with_edge_attr2 = nx.weisfeiler_lehman_graph_hash(
+            G1, edge_attr="edge_attr2"
+        )
+        g1_hash_no_edge_attr = nx.weisfeiler_lehman_graph_hash(G1, edge_attr=None)
+
+        assert g1_hash_with_edge_attr1 != g1_hash_no_edge_attr
+        assert g1_hash_with_edge_attr2 != g1_hash_no_edge_attr
+        assert g1_hash_with_edge_attr1 != g1_hash_with_edge_attr2
+
+        G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
+
+        g2_hash_with_edge_attr1 = nx.weisfeiler_lehman_graph_hash(
+            G2, edge_attr="edge_attr1"
+        )
+        g2_hash_with_edge_attr2 = nx.weisfeiler_lehman_graph_hash(
+            G2, edge_attr="edge_attr2"
+        )
+
+        assert g1_hash_with_edge_attr1 == g2_hash_with_edge_attr1
+        assert g1_hash_with_edge_attr2 == g2_hash_with_edge_attr2
+
+
+def test_missing_edge_attr():
+    """
+    If the 'edge_attr' argument is supplied but is missing from an edge in the graph,
+    we should raise a KeyError
+    """
+    G = nx.Graph()
+    G.add_edges_from([(1, 2, {"edge_attr1": "a"}), (1, 3, {})])
+    pytest.raises(KeyError, nx.weisfeiler_lehman_graph_hash, G, edge_attr="edge_attr1")
+
+
+def test_isomorphic_node_attr():
+    """
+    Isomorphic graphs with differing node attributes should yield different graph
+    hashes if the 'node_attr' argument is supplied and populated in the graph, and
+    there are no hash collisions.
+    The output should still be invariant to node-relabeling
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G1 = nx.erdos_renyi_graph(n, p * i, seed=400 + i)
+
+        for u in G1.nodes():
+            G1.nodes[u]["node_attr1"] = f"{u}-1"
+            G1.nodes[u]["node_attr2"] = f"{u}-2"
+
+        g1_hash_with_node_attr1 = nx.weisfeiler_lehman_graph_hash(
+            G1, node_attr="node_attr1"
+        )
+        g1_hash_with_node_attr2 = nx.weisfeiler_lehman_graph_hash(
+            G1, node_attr="node_attr2"
+        )
+        g1_hash_no_node_attr = nx.weisfeiler_lehman_graph_hash(G1, node_attr=None)
+
+        assert g1_hash_with_node_attr1 != g1_hash_no_node_attr
+        assert g1_hash_with_node_attr2 != g1_hash_no_node_attr
+        assert g1_hash_with_node_attr1 != g1_hash_with_node_attr2
+
+        G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
+
+        g2_hash_with_node_attr1 = nx.weisfeiler_lehman_graph_hash(
+            G2, node_attr="node_attr1"
+        )
+        g2_hash_with_node_attr2 = nx.weisfeiler_lehman_graph_hash(
+            G2, node_attr="node_attr2"
+        )
+
+        assert g1_hash_with_node_attr1 == g2_hash_with_node_attr1
+        assert g1_hash_with_node_attr2 == g2_hash_with_node_attr2
+
+
+def test_missing_node_attr():
+    """
+    If the 'node_attr' argument is supplied but is missing from a node in the graph,
+    we should raise a KeyError
+    """
+    G = nx.Graph()
+    G.add_nodes_from([(1, {"node_attr1": "a"}), (2, {})])
+    G.add_edges_from([(1, 2), (2, 3), (3, 1), (1, 4)])
+    pytest.raises(KeyError, nx.weisfeiler_lehman_graph_hash, G, node_attr="node_attr1")
+
+
+def test_isomorphic_edge_attr_and_node_attr():
+    """
+    Isomorphic graphs with differing node attributes should yield different graph
+    hashes if the 'node_attr' and 'edge_attr' argument is supplied and populated in
+    the graph, and there are no hash collisions.
+    The output should still be invariant to node-relabeling
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G1 = nx.erdos_renyi_graph(n, p * i, seed=500 + i)
+
+        for u in G1.nodes():
+            G1.nodes[u]["node_attr1"] = f"{u}-1"
+            G1.nodes[u]["node_attr2"] = f"{u}-2"
+
+        for a, b in G1.edges:
+            G1[a][b]["edge_attr1"] = f"{a}-{b}-1"
+            G1[a][b]["edge_attr2"] = f"{a}-{b}-2"
+
+        g1_hash_edge1_node1 = nx.weisfeiler_lehman_graph_hash(
+            G1, edge_attr="edge_attr1", node_attr="node_attr1"
+        )
+        g1_hash_edge2_node2 = nx.weisfeiler_lehman_graph_hash(
+            G1, edge_attr="edge_attr2", node_attr="node_attr2"
+        )
+        g1_hash_edge1_node2 = nx.weisfeiler_lehman_graph_hash(
+            G1, edge_attr="edge_attr1", node_attr="node_attr2"
+        )
+        g1_hash_no_attr = nx.weisfeiler_lehman_graph_hash(G1)
+
+        assert g1_hash_edge1_node1 != g1_hash_no_attr
+        assert g1_hash_edge2_node2 != g1_hash_no_attr
+        assert g1_hash_edge1_node1 != g1_hash_edge2_node2
+        assert g1_hash_edge1_node2 != g1_hash_edge2_node2
+        assert g1_hash_edge1_node2 != g1_hash_edge1_node1
+
+        G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
+
+        g2_hash_edge1_node1 = nx.weisfeiler_lehman_graph_hash(
+            G2, edge_attr="edge_attr1", node_attr="node_attr1"
+        )
+        g2_hash_edge2_node2 = nx.weisfeiler_lehman_graph_hash(
+            G2, edge_attr="edge_attr2", node_attr="node_attr2"
+        )
+
+        assert g1_hash_edge1_node1 == g2_hash_edge1_node1
+        assert g1_hash_edge2_node2 == g2_hash_edge2_node2
+
+
+def test_digest_size():
+    """
+    The hash string lengths should be as expected for a variety of graphs and
+    digest sizes
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G = nx.erdos_renyi_graph(n, p * i, seed=1000 + i)
+
+        h16 = nx.weisfeiler_lehman_graph_hash(G)
+        h32 = nx.weisfeiler_lehman_graph_hash(G, digest_size=32)
+
+        assert h16 != h32
+        assert len(h16) == 16 * 2
+        assert len(h32) == 32 * 2
+
+
+# Unit tests for the :func:`~networkx.weisfeiler_lehman_hash_subgraphs` function
+
+
+def is_subiteration(a, b):
+    """
+    returns True if that each hash sequence in 'a' is a prefix for
+    the corresponding sequence indexed by the same node in 'b'.
+    """
+    return all(b[node][: len(hashes)] == hashes for node, hashes in a.items())
+
+
+def hexdigest_sizes_correct(a, digest_size):
+    """
+    returns True if all hex digest sizes are the expected length in a node:subgraph-hashes
+    dictionary. Hex digest string length == 2 * bytes digest length since each pair of hex
+    digits encodes 1 byte (https://docs.python.org/3/library/hashlib.html)
+    """
+    hexdigest_size = digest_size * 2
+    list_digest_sizes_correct = lambda l: all(len(x) == hexdigest_size for x in l)
+    return all(list_digest_sizes_correct(hashes) for hashes in a.values())
+
+
+def test_empty_graph_subgraph_hash():
+    """ "
+    empty graphs should give empty dict subgraph hashes regardless of other params
+    """
+    G = nx.empty_graph()
+
+    subgraph_hashes1 = nx.weisfeiler_lehman_subgraph_hashes(G)
+    subgraph_hashes2 = nx.weisfeiler_lehman_subgraph_hashes(G, edge_attr="edge_attr")
+    subgraph_hashes3 = nx.weisfeiler_lehman_subgraph_hashes(G, node_attr="edge_attr")
+    subgraph_hashes4 = nx.weisfeiler_lehman_subgraph_hashes(G, iterations=2)
+    subgraph_hashes5 = nx.weisfeiler_lehman_subgraph_hashes(G, digest_size=64)
+
+    assert subgraph_hashes1 == {}
+    assert subgraph_hashes2 == {}
+    assert subgraph_hashes3 == {}
+    assert subgraph_hashes4 == {}
+    assert subgraph_hashes5 == {}
+
+
+def test_directed_subgraph_hash():
+    """
+    A directed graph with no bi-directional edges should yield different subgraph hashes
+    to the same graph taken as undirected, if all hashes don't collide.
+    """
+    r = 10
+    for i in range(r):
+        G_directed = nx.gn_graph(10 + r, seed=100 + i)
+        G_undirected = nx.to_undirected(G_directed)
+
+        directed_subgraph_hashes = nx.weisfeiler_lehman_subgraph_hashes(G_directed)
+        undirected_subgraph_hashes = nx.weisfeiler_lehman_subgraph_hashes(G_undirected)
+
+        assert directed_subgraph_hashes != undirected_subgraph_hashes
+
+
+def test_reversed_subgraph_hash():
+    """
+    A directed graph with no bi-directional edges should yield different subgraph hashes
+    to the same graph taken with edge directions reversed if there are no hash collisions.
+    Here we test a cycle graph which is the minimal counterexample
+    """
+    G = nx.cycle_graph(5, create_using=nx.DiGraph)
+    nx.set_node_attributes(G, {n: str(n) for n in G.nodes()}, name="label")
+
+    G_reversed = G.reverse()
+
+    h = nx.weisfeiler_lehman_subgraph_hashes(G, node_attr="label")
+    h_reversed = nx.weisfeiler_lehman_subgraph_hashes(G_reversed, node_attr="label")
+
+    assert h != h_reversed
+
+
+def test_isomorphic_subgraph_hash():
+    """
+    the subgraph hashes should be invariant to node-relabeling when the output is reindexed
+    by the same mapping and all hashes don't collide.
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G1 = nx.erdos_renyi_graph(n, p * i, seed=200 + i)
+        G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
+
+        g1_subgraph_hashes = nx.weisfeiler_lehman_subgraph_hashes(G1)
+        g2_subgraph_hashes = nx.weisfeiler_lehman_subgraph_hashes(G2)
+
+        assert g1_subgraph_hashes == {-1 * k: v for k, v in g2_subgraph_hashes.items()}
+
+
+def test_isomorphic_edge_attr_subgraph_hash():
+    """
+    Isomorphic graphs with differing edge attributes should yield different subgraph
+    hashes if the 'edge_attr' argument is supplied and populated in the graph, and
+    all hashes don't collide.
+    The output should still be invariant to node-relabeling
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G1 = nx.erdos_renyi_graph(n, p * i, seed=300 + i)
+
+        for a, b in G1.edges:
+            G1[a][b]["edge_attr1"] = f"{a}-{b}-1"
+            G1[a][b]["edge_attr2"] = f"{a}-{b}-2"
+
+        g1_hash_with_edge_attr1 = nx.weisfeiler_lehman_subgraph_hashes(
+            G1, edge_attr="edge_attr1"
+        )
+        g1_hash_with_edge_attr2 = nx.weisfeiler_lehman_subgraph_hashes(
+            G1, edge_attr="edge_attr2"
+        )
+        g1_hash_no_edge_attr = nx.weisfeiler_lehman_subgraph_hashes(G1, edge_attr=None)
+
+        assert g1_hash_with_edge_attr1 != g1_hash_no_edge_attr
+        assert g1_hash_with_edge_attr2 != g1_hash_no_edge_attr
+        assert g1_hash_with_edge_attr1 != g1_hash_with_edge_attr2
+
+        G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
+
+        g2_hash_with_edge_attr1 = nx.weisfeiler_lehman_subgraph_hashes(
+            G2, edge_attr="edge_attr1"
+        )
+        g2_hash_with_edge_attr2 = nx.weisfeiler_lehman_subgraph_hashes(
+            G2, edge_attr="edge_attr2"
+        )
+
+        assert g1_hash_with_edge_attr1 == {
+            -1 * k: v for k, v in g2_hash_with_edge_attr1.items()
+        }
+        assert g1_hash_with_edge_attr2 == {
+            -1 * k: v for k, v in g2_hash_with_edge_attr2.items()
+        }
+
+
+def test_missing_edge_attr_subgraph_hash():
+    """
+    If the 'edge_attr' argument is supplied but is missing from an edge in the graph,
+    we should raise a KeyError
+    """
+    G = nx.Graph()
+    G.add_edges_from([(1, 2, {"edge_attr1": "a"}), (1, 3, {})])
+    pytest.raises(
+        KeyError, nx.weisfeiler_lehman_subgraph_hashes, G, edge_attr="edge_attr1"
+    )
+
+
+def test_isomorphic_node_attr_subgraph_hash():
+    """
+    Isomorphic graphs with differing node attributes should yield different subgraph
+    hashes if the 'node_attr' argument is supplied and populated in the graph, and
+    all hashes don't collide.
+    The output should still be invariant to node-relabeling
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G1 = nx.erdos_renyi_graph(n, p * i, seed=400 + i)
+
+        for u in G1.nodes():
+            G1.nodes[u]["node_attr1"] = f"{u}-1"
+            G1.nodes[u]["node_attr2"] = f"{u}-2"
+
+        g1_hash_with_node_attr1 = nx.weisfeiler_lehman_subgraph_hashes(
+            G1, node_attr="node_attr1"
+        )
+        g1_hash_with_node_attr2 = nx.weisfeiler_lehman_subgraph_hashes(
+            G1, node_attr="node_attr2"
+        )
+        g1_hash_no_node_attr = nx.weisfeiler_lehman_subgraph_hashes(G1, node_attr=None)
+
+        assert g1_hash_with_node_attr1 != g1_hash_no_node_attr
+        assert g1_hash_with_node_attr2 != g1_hash_no_node_attr
+        assert g1_hash_with_node_attr1 != g1_hash_with_node_attr2
+
+        G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
+
+        g2_hash_with_node_attr1 = nx.weisfeiler_lehman_subgraph_hashes(
+            G2, node_attr="node_attr1"
+        )
+        g2_hash_with_node_attr2 = nx.weisfeiler_lehman_subgraph_hashes(
+            G2, node_attr="node_attr2"
+        )
+
+        assert g1_hash_with_node_attr1 == {
+            -1 * k: v for k, v in g2_hash_with_node_attr1.items()
+        }
+        assert g1_hash_with_node_attr2 == {
+            -1 * k: v for k, v in g2_hash_with_node_attr2.items()
+        }
+
+
+def test_missing_node_attr_subgraph_hash():
+    """
+    If the 'node_attr' argument is supplied but is missing from a node in the graph,
+    we should raise a KeyError
+    """
+    G = nx.Graph()
+    G.add_nodes_from([(1, {"node_attr1": "a"}), (2, {})])
+    G.add_edges_from([(1, 2), (2, 3), (3, 1), (1, 4)])
+    pytest.raises(
+        KeyError, nx.weisfeiler_lehman_subgraph_hashes, G, node_attr="node_attr1"
+    )
+
+
+def test_isomorphic_edge_attr_and_node_attr_subgraph_hash():
+    """
+    Isomorphic graphs with differing node attributes should yield different subgraph
+    hashes if the 'node_attr' and 'edge_attr' argument is supplied and populated in
+    the graph, and all hashes don't collide
+    The output should still be invariant to node-relabeling
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G1 = nx.erdos_renyi_graph(n, p * i, seed=500 + i)
+
+        for u in G1.nodes():
+            G1.nodes[u]["node_attr1"] = f"{u}-1"
+            G1.nodes[u]["node_attr2"] = f"{u}-2"
+
+        for a, b in G1.edges:
+            G1[a][b]["edge_attr1"] = f"{a}-{b}-1"
+            G1[a][b]["edge_attr2"] = f"{a}-{b}-2"
+
+        g1_hash_edge1_node1 = nx.weisfeiler_lehman_subgraph_hashes(
+            G1, edge_attr="edge_attr1", node_attr="node_attr1"
+        )
+        g1_hash_edge2_node2 = nx.weisfeiler_lehman_subgraph_hashes(
+            G1, edge_attr="edge_attr2", node_attr="node_attr2"
+        )
+        g1_hash_edge1_node2 = nx.weisfeiler_lehman_subgraph_hashes(
+            G1, edge_attr="edge_attr1", node_attr="node_attr2"
+        )
+        g1_hash_no_attr = nx.weisfeiler_lehman_subgraph_hashes(G1)
+
+        assert g1_hash_edge1_node1 != g1_hash_no_attr
+        assert g1_hash_edge2_node2 != g1_hash_no_attr
+        assert g1_hash_edge1_node1 != g1_hash_edge2_node2
+        assert g1_hash_edge1_node2 != g1_hash_edge2_node2
+        assert g1_hash_edge1_node2 != g1_hash_edge1_node1
+
+        G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
+
+        g2_hash_edge1_node1 = nx.weisfeiler_lehman_subgraph_hashes(
+            G2, edge_attr="edge_attr1", node_attr="node_attr1"
+        )
+        g2_hash_edge2_node2 = nx.weisfeiler_lehman_subgraph_hashes(
+            G2, edge_attr="edge_attr2", node_attr="node_attr2"
+        )
+
+        assert g1_hash_edge1_node1 == {
+            -1 * k: v for k, v in g2_hash_edge1_node1.items()
+        }
+        assert g1_hash_edge2_node2 == {
+            -1 * k: v for k, v in g2_hash_edge2_node2.items()
+        }
+
+
+def test_iteration_depth():
+    """
+    All nodes should have the correct number of subgraph hashes in the output when
+    using degree as initial node labels
+    Subsequent iteration depths for the same graph should be additive for each node
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G = nx.erdos_renyi_graph(n, p * i, seed=600 + i)
+
+        depth3 = nx.weisfeiler_lehman_subgraph_hashes(G, iterations=3)
+        depth4 = nx.weisfeiler_lehman_subgraph_hashes(G, iterations=4)
+        depth5 = nx.weisfeiler_lehman_subgraph_hashes(G, iterations=5)
+
+        assert all(len(hashes) == 3 for hashes in depth3.values())
+        assert all(len(hashes) == 4 for hashes in depth4.values())
+        assert all(len(hashes) == 5 for hashes in depth5.values())
+
+        assert is_subiteration(depth3, depth4)
+        assert is_subiteration(depth4, depth5)
+        assert is_subiteration(depth3, depth5)
+
+
+def test_iteration_depth_edge_attr():
+    """
+    All nodes should have the correct number of subgraph hashes in the output when
+    setting initial node labels empty and using an edge attribute when aggregating
+    neighborhoods.
+    Subsequent iteration depths for the same graph should be additive for each node
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G = nx.erdos_renyi_graph(n, p * i, seed=700 + i)
+
+        for a, b in G.edges:
+            G[a][b]["edge_attr1"] = f"{a}-{b}-1"
+
+        depth3 = nx.weisfeiler_lehman_subgraph_hashes(
+            G, edge_attr="edge_attr1", iterations=3
+        )
+        depth4 = nx.weisfeiler_lehman_subgraph_hashes(
+            G, edge_attr="edge_attr1", iterations=4
+        )
+        depth5 = nx.weisfeiler_lehman_subgraph_hashes(
+            G, edge_attr="edge_attr1", iterations=5
+        )
+
+        assert all(len(hashes) == 3 for hashes in depth3.values())
+        assert all(len(hashes) == 4 for hashes in depth4.values())
+        assert all(len(hashes) == 5 for hashes in depth5.values())
+
+        assert is_subiteration(depth3, depth4)
+        assert is_subiteration(depth4, depth5)
+        assert is_subiteration(depth3, depth5)
+
+
+def test_iteration_depth_node_attr():
+    """
+    All nodes should have the correct number of subgraph hashes in the output when
+    setting initial node labels to an attribute.
+    Subsequent iteration depths for the same graph should be additive for each node
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G = nx.erdos_renyi_graph(n, p * i, seed=800 + i)
+
+        for u in G.nodes():
+            G.nodes[u]["node_attr1"] = f"{u}-1"
+
+        depth3 = nx.weisfeiler_lehman_subgraph_hashes(
+            G, node_attr="node_attr1", iterations=3
+        )
+        depth4 = nx.weisfeiler_lehman_subgraph_hashes(
+            G, node_attr="node_attr1", iterations=4
+        )
+        depth5 = nx.weisfeiler_lehman_subgraph_hashes(
+            G, node_attr="node_attr1", iterations=5
+        )
+
+        assert all(len(hashes) == 3 for hashes in depth3.values())
+        assert all(len(hashes) == 4 for hashes in depth4.values())
+        assert all(len(hashes) == 5 for hashes in depth5.values())
+
+        assert is_subiteration(depth3, depth4)
+        assert is_subiteration(depth4, depth5)
+        assert is_subiteration(depth3, depth5)
+
+
+def test_iteration_depth_node_edge_attr():
+    """
+    All nodes should have the correct number of subgraph hashes in the output when
+    setting initial node labels to an attribute and also using an edge attribute when
+    aggregating neighborhoods.
+    Subsequent iteration depths for the same graph should be additive for each node
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G = nx.erdos_renyi_graph(n, p * i, seed=900 + i)
+
+        for u in G.nodes():
+            G.nodes[u]["node_attr1"] = f"{u}-1"
+
+        for a, b in G.edges:
+            G[a][b]["edge_attr1"] = f"{a}-{b}-1"
+
+        depth3 = nx.weisfeiler_lehman_subgraph_hashes(
+            G, edge_attr="edge_attr1", node_attr="node_attr1", iterations=3
+        )
+        depth4 = nx.weisfeiler_lehman_subgraph_hashes(
+            G, edge_attr="edge_attr1", node_attr="node_attr1", iterations=4
+        )
+        depth5 = nx.weisfeiler_lehman_subgraph_hashes(
+            G, edge_attr="edge_attr1", node_attr="node_attr1", iterations=5
+        )
+
+        assert all(len(hashes) == 3 for hashes in depth3.values())
+        assert all(len(hashes) == 4 for hashes in depth4.values())
+        assert all(len(hashes) == 5 for hashes in depth5.values())
+
+        assert is_subiteration(depth3, depth4)
+        assert is_subiteration(depth4, depth5)
+        assert is_subiteration(depth3, depth5)
+
+
+def test_digest_size_subgraph_hash():
+    """
+    The hash string lengths should be as expected for a variety of graphs and
+    digest sizes
+    """
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(1, r + 1):
+        G = nx.erdos_renyi_graph(n, p * i, seed=1000 + i)
+
+        digest_size16_hashes = nx.weisfeiler_lehman_subgraph_hashes(G)
+        digest_size32_hashes = nx.weisfeiler_lehman_subgraph_hashes(G, digest_size=32)
+
+        assert digest_size16_hashes != digest_size32_hashes
+
+        assert hexdigest_sizes_correct(digest_size16_hashes, 16)
+        assert hexdigest_sizes_correct(digest_size32_hashes, 32)
+
+
+def test_initial_node_labels_subgraph_hash():
+    """
+    Including the hashed initial label prepends an extra hash to the lists
+    """
+    G = nx.path_graph(5)
+    nx.set_node_attributes(G, {i: int(0 < i < 4) for i in G}, "label")
+    # initial node labels:
+    # 0--1--1--1--0
+
+    without_initial_label = nx.weisfeiler_lehman_subgraph_hashes(G, node_attr="label")
+    assert all(len(v) == 3 for v in without_initial_label.values())
+    # 3 different 1 hop nhds
+    assert len({v[0] for v in without_initial_label.values()}) == 3
+
+    with_initial_label = nx.weisfeiler_lehman_subgraph_hashes(
+        G, node_attr="label", include_initial_labels=True
+    )
+    assert all(len(v) == 4 for v in with_initial_label.values())
+    # 2 different initial labels
+    assert len({v[0] for v in with_initial_label.values()}) == 2
+
+    # check hashes match otherwise
+    for u in G:
+        for a, b in zip(
+            with_initial_label[u][1:], without_initial_label[u], strict=True
+        ):
+            assert a == b

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_graphical.py

@@ -0,0 +1,163 @@
+import pytest
+
+import networkx as nx
+
+
+def test_valid_degree_sequence1():
+    n = 100
+    p = 0.3
+    for i in range(10):
+        G = nx.erdos_renyi_graph(n, p)
+        deg = (d for n, d in G.degree())
+        assert nx.is_graphical(deg, method="eg")
+        assert nx.is_graphical(deg, method="hh")
+
+
+def test_valid_degree_sequence2():
+    n = 100
+    for i in range(10):
+        G = nx.barabasi_albert_graph(n, 1)
+        deg = (d for n, d in G.degree())
+        assert nx.is_graphical(deg, method="eg")
+        assert nx.is_graphical(deg, method="hh")
+
+
+def test_string_input():
+    pytest.raises(nx.NetworkXException, nx.is_graphical, [], "foo")
+    pytest.raises(nx.NetworkXException, nx.is_graphical, ["red"], "hh")
+    pytest.raises(nx.NetworkXException, nx.is_graphical, ["red"], "eg")
+
+
+def test_non_integer_input():
+    pytest.raises(nx.NetworkXException, nx.is_graphical, [72.5], "eg")
+    pytest.raises(nx.NetworkXException, nx.is_graphical, [72.5], "hh")
+
+
+def test_negative_input():
+    assert not nx.is_graphical([-1], "hh")
+    assert not nx.is_graphical([-1], "eg")
+
+
+class TestAtlas:
+    @classmethod
+    def setup_class(cls):
+        global atlas
+        from networkx.generators import atlas
+
+        cls.GAG = atlas.graph_atlas_g()
+
+    def test_atlas(self):
+        for graph in self.GAG:
+            deg = (d for n, d in graph.degree())
+            assert nx.is_graphical(deg, method="eg")
+            assert nx.is_graphical(deg, method="hh")
+
+
+def test_small_graph_true():
+    z = [5, 3, 3, 3, 3, 2, 2, 2, 1, 1, 1]
+    assert nx.is_graphical(z, method="hh")
+    assert nx.is_graphical(z, method="eg")
+    z = [10, 3, 3, 3, 3, 2, 2, 2, 2, 2, 2]
+    assert nx.is_graphical(z, method="hh")
+    assert nx.is_graphical(z, method="eg")
+    z = [1, 1, 1, 1, 1, 2, 2, 2, 3, 4]
+    assert nx.is_graphical(z, method="hh")
+    assert nx.is_graphical(z, method="eg")
+
+
+def test_small_graph_false():
+    z = [1000, 3, 3, 3, 3, 2, 2, 2, 1, 1, 1]
+    assert not nx.is_graphical(z, method="hh")
+    assert not nx.is_graphical(z, method="eg")
+    z = [6, 5, 4, 4, 2, 1, 1, 1]
+    assert not nx.is_graphical(z, method="hh")
+    assert not nx.is_graphical(z, method="eg")
+    z = [1, 1, 1, 1, 1, 1, 2, 2, 2, 3, 4]
+    assert not nx.is_graphical(z, method="hh")
+    assert not nx.is_graphical(z, method="eg")
+
+
+def test_directed_degree_sequence():
+    # Test a range of valid directed degree sequences
+    n, r = 100, 10
+    p = 1.0 / r
+    for i in range(r):
+        G = nx.erdos_renyi_graph(n, p * (i + 1), None, True)
+        din = (d for n, d in G.in_degree())
+        dout = (d for n, d in G.out_degree())
+        assert nx.is_digraphical(din, dout)
+
+
+def test_small_directed_sequences():
+    dout = [5, 3, 3, 3, 3, 2, 2, 2, 1, 1, 1]
+    din = [3, 3, 3, 3, 3, 2, 2, 2, 2, 2, 1]
+    assert nx.is_digraphical(din, dout)
+    # Test nongraphical directed sequence
+    dout = [1000, 3, 3, 3, 3, 2, 2, 2, 1, 1, 1]
+    din = [103, 102, 102, 102, 102, 102, 102, 102, 102, 102]
+    assert not nx.is_digraphical(din, dout)
+    # Test digraphical small sequence
+    dout = [1, 1, 1, 1, 1, 2, 2, 2, 3, 4]
+    din = [2, 2, 2, 2, 2, 2, 2, 2, 1, 1]
+    assert nx.is_digraphical(din, dout)
+    # Test nonmatching sum
+    din = [2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1]
+    assert not nx.is_digraphical(din, dout)
+    # Test for negative integer in sequence
+    din = [2, 2, 2, -2, 2, 2, 2, 2, 1, 1, 4]
+    assert not nx.is_digraphical(din, dout)
+    # Test for noninteger
+    din = dout = [1, 1, 1.1, 1]
+    assert not nx.is_digraphical(din, dout)
+    din = dout = [1, 1, "rer", 1]
+    assert not nx.is_digraphical(din, dout)
+
+
+def test_multi_sequence():
+    # Test nongraphical multi sequence
+    seq = [1000, 3, 3, 3, 3, 2, 2, 2, 1, 1]
+    assert not nx.is_multigraphical(seq)
+    # Test small graphical multi sequence
+    seq = [6, 5, 4, 4, 2, 1, 1, 1]
+    assert nx.is_multigraphical(seq)
+    # Test for negative integer in sequence
+    seq = [6, 5, 4, -4, 2, 1, 1, 1]
+    assert not nx.is_multigraphical(seq)
+    # Test for sequence with odd sum
+    seq = [1, 1, 1, 1, 1, 1, 2, 2, 2, 3, 4]
+    assert not nx.is_multigraphical(seq)
+    # Test for noninteger
+    seq = [1, 1, 1.1, 1]
+    assert not nx.is_multigraphical(seq)
+    seq = [1, 1, "rer", 1]
+    assert not nx.is_multigraphical(seq)
+
+
+def test_pseudo_sequence():
+    # Test small valid pseudo sequence
+    seq = [1000, 3, 3, 3, 3, 2, 2, 2, 1, 1]
+    assert nx.is_pseudographical(seq)
+    # Test for sequence with odd sum
+    seq = [1000, 3, 3, 3, 3, 2, 2, 2, 1, 1, 1]
+    assert not nx.is_pseudographical(seq)
+    # Test for negative integer in sequence
+    seq = [1000, 3, 3, 3, 3, 2, 2, -2, 1, 1]
+    assert not nx.is_pseudographical(seq)
+    # Test for noninteger
+    seq = [1, 1, 1.1, 1]
+    assert not nx.is_pseudographical(seq)
+    seq = [1, 1, "rer", 1]
+    assert not nx.is_pseudographical(seq)
+
+
+def test_numpy_degree_sequence():
+    np = pytest.importorskip("numpy")
+    ds = np.array([1, 2, 2, 2, 1], dtype=np.int64)
+    assert nx.is_graphical(ds, "eg")
+    assert nx.is_graphical(ds, "hh")
+    ds = np.array([1, 2, 2, 2, 1], dtype=np.float64)
+    assert nx.is_graphical(ds, "eg")
+    assert nx.is_graphical(ds, "hh")
+    ds = np.array([1.1, 2, 2, 2, 1], dtype=np.float64)
+    pytest.raises(nx.NetworkXException, nx.is_graphical, ds, "eg")
+    pytest.raises(nx.NetworkXException, nx.is_graphical, ds, "hh")

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_lowest_common_ancestors.py

@@ -0,0 +1,427 @@
+from itertools import chain, combinations, product
+
+import pytest
+
+import networkx as nx
+
+tree_all_pairs_lca = nx.tree_all_pairs_lowest_common_ancestor
+all_pairs_lca = nx.all_pairs_lowest_common_ancestor
+
+
+def get_pair(dictionary, n1, n2):
+    if (n1, n2) in dictionary:
+        return dictionary[n1, n2]
+    else:
+        return dictionary[n2, n1]
+
+
+class TestTreeLCA:
+    @classmethod
+    def setup_class(cls):
+        cls.DG = nx.DiGraph()
+        edges = [(0, 1), (0, 2), (1, 3), (1, 4), (2, 5), (2, 6)]
+        cls.DG.add_edges_from(edges)
+        cls.ans = dict(tree_all_pairs_lca(cls.DG, 0))
+        gold = {(n, n): n for n in cls.DG}
+        gold.update({(0, i): 0 for i in range(1, 7)})
+        gold.update(
+            {
+                (1, 2): 0,
+                (1, 3): 1,
+                (1, 4): 1,
+                (1, 5): 0,
+                (1, 6): 0,
+                (2, 3): 0,
+                (2, 4): 0,
+                (2, 5): 2,
+                (2, 6): 2,
+                (3, 4): 1,
+                (3, 5): 0,
+                (3, 6): 0,
+                (4, 5): 0,
+                (4, 6): 0,
+                (5, 6): 2,
+            }
+        )
+
+        cls.gold = gold
+
+    @staticmethod
+    def assert_has_same_pairs(d1, d2):
+        for a, b in ((min(pair), max(pair)) for pair in chain(d1, d2)):
+            assert get_pair(d1, a, b) == get_pair(d2, a, b)
+
+    def test_tree_all_pairs_lca_default_root(self):
+        assert dict(tree_all_pairs_lca(self.DG)) == self.ans
+
+    def test_tree_all_pairs_lca_return_subset(self):
+        test_pairs = [(0, 1), (0, 1), (1, 0)]
+        ans = dict(tree_all_pairs_lca(self.DG, 0, test_pairs))
+        assert (0, 1) in ans and (1, 0) in ans
+        assert len(ans) == 2
+
+    def test_tree_all_pairs_lca(self):
+        all_pairs = chain(combinations(self.DG, 2), ((node, node) for node in self.DG))
+
+        ans = dict(tree_all_pairs_lca(self.DG, 0, all_pairs))
+        self.assert_has_same_pairs(ans, self.ans)
+
+    def test_tree_all_pairs_gold_example(self):
+        ans = dict(tree_all_pairs_lca(self.DG))
+        self.assert_has_same_pairs(self.gold, ans)
+
+    def test_tree_all_pairs_lca_invalid_input(self):
+        empty_digraph = tree_all_pairs_lca(nx.DiGraph())
+        pytest.raises(nx.NetworkXPointlessConcept, list, empty_digraph)
+
+        bad_pairs_digraph = tree_all_pairs_lca(self.DG, pairs=[(-1, -2)])
+        pytest.raises(nx.NodeNotFound, list, bad_pairs_digraph)
+
+    def test_tree_all_pairs_lca_subtrees(self):
+        ans = dict(tree_all_pairs_lca(self.DG, 1))
+        gold = {
+            pair: lca
+            for (pair, lca) in self.gold.items()
+            if all(n in (1, 3, 4) for n in pair)
+        }
+        self.assert_has_same_pairs(gold, ans)
+
+    def test_tree_all_pairs_lca_disconnected_nodes(self):
+        G = nx.DiGraph()
+        G.add_node(1)
+        assert {(1, 1): 1} == dict(tree_all_pairs_lca(G))
+
+        G.add_node(0)
+        assert {(1, 1): 1} == dict(tree_all_pairs_lca(G, 1))
+        assert {(0, 0): 0} == dict(tree_all_pairs_lca(G, 0))
+
+        pytest.raises(nx.NetworkXError, list, tree_all_pairs_lca(G))
+
+    def test_tree_all_pairs_lca_error_if_input_not_tree(self):
+        # Cycle
+        G = nx.DiGraph([(1, 2), (2, 1)])
+        pytest.raises(nx.NetworkXError, list, tree_all_pairs_lca(G))
+        # DAG
+        G = nx.DiGraph([(0, 2), (1, 2)])
+        pytest.raises(nx.NetworkXError, list, tree_all_pairs_lca(G))
+
+    def test_tree_all_pairs_lca_generator(self):
+        pairs = iter([(0, 1), (0, 1), (1, 0)])
+        some_pairs = dict(tree_all_pairs_lca(self.DG, 0, pairs))
+        assert (0, 1) in some_pairs and (1, 0) in some_pairs
+        assert len(some_pairs) == 2
+
+    def test_tree_all_pairs_lca_nonexisting_pairs_exception(self):
+        lca = tree_all_pairs_lca(self.DG, 0, [(-1, -1)])
+        pytest.raises(nx.NodeNotFound, list, lca)
+        # check if node is None
+        lca = tree_all_pairs_lca(self.DG, None, [(-1, -1)])
+        pytest.raises(nx.NodeNotFound, list, lca)
+
+    def test_tree_all_pairs_lca_routine_bails_on_DAGs(self):
+        G = nx.DiGraph([(3, 4), (5, 4)])
+        pytest.raises(nx.NetworkXError, list, tree_all_pairs_lca(G))
+
+    def test_tree_all_pairs_lca_not_implemented(self):
+        NNI = nx.NetworkXNotImplemented
+        G = nx.Graph([(0, 1)])
+        with pytest.raises(NNI):
+            next(tree_all_pairs_lca(G))
+        with pytest.raises(NNI):
+            next(all_pairs_lca(G))
+        pytest.raises(NNI, nx.lowest_common_ancestor, G, 0, 1)
+        G = nx.MultiGraph([(0, 1)])
+        with pytest.raises(NNI):
+            next(tree_all_pairs_lca(G))
+        with pytest.raises(NNI):
+            next(all_pairs_lca(G))
+        pytest.raises(NNI, nx.lowest_common_ancestor, G, 0, 1)
+
+    def test_tree_all_pairs_lca_trees_without_LCAs(self):
+        G = nx.DiGraph()
+        G.add_node(3)
+        ans = list(tree_all_pairs_lca(G))
+        assert ans == [((3, 3), 3)]
+
+
+class TestMultiTreeLCA(TestTreeLCA):
+    @classmethod
+    def setup_class(cls):
+        cls.DG = nx.MultiDiGraph()
+        edges = [(0, 1), (0, 2), (1, 3), (1, 4), (2, 5), (2, 6)]
+        cls.DG.add_edges_from(edges)
+        cls.ans = dict(tree_all_pairs_lca(cls.DG, 0))
+        # add multiedges
+        cls.DG.add_edges_from(edges)
+
+        gold = {(n, n): n for n in cls.DG}
+        gold.update({(0, i): 0 for i in range(1, 7)})
+        gold.update(
+            {
+                (1, 2): 0,
+                (1, 3): 1,
+                (1, 4): 1,
+                (1, 5): 0,
+                (1, 6): 0,
+                (2, 3): 0,
+                (2, 4): 0,
+                (2, 5): 2,
+                (2, 6): 2,
+                (3, 4): 1,
+                (3, 5): 0,
+                (3, 6): 0,
+                (4, 5): 0,
+                (4, 6): 0,
+                (5, 6): 2,
+            }
+        )
+
+        cls.gold = gold
+
+
+class TestDAGLCA:
+    @classmethod
+    def setup_class(cls):
+        cls.DG = nx.DiGraph()
+        nx.add_path(cls.DG, (0, 1, 2, 3))
+        nx.add_path(cls.DG, (0, 4, 3))
+        nx.add_path(cls.DG, (0, 5, 6, 8, 3))
+        nx.add_path(cls.DG, (5, 7, 8))
+        cls.DG.add_edge(6, 2)
+        cls.DG.add_edge(7, 2)
+
+        cls.root_distance = nx.shortest_path_length(cls.DG, source=0)
+
+        cls.gold = {
+            (1, 1): 1,
+            (1, 2): 1,
+            (1, 3): 1,
+            (1, 4): 0,
+            (1, 5): 0,
+            (1, 6): 0,
+            (1, 7): 0,
+            (1, 8): 0,
+            (2, 2): 2,
+            (2, 3): 2,
+            (2, 4): 0,
+            (2, 5): 5,
+            (2, 6): 6,
+            (2, 7): 7,
+            (2, 8): 7,
+            (3, 3): 3,
+            (3, 4): 4,
+            (3, 5): 5,
+            (3, 6): 6,
+            (3, 7): 7,
+            (3, 8): 8,
+            (4, 4): 4,
+            (4, 5): 0,
+            (4, 6): 0,
+            (4, 7): 0,
+            (4, 8): 0,
+            (5, 5): 5,
+            (5, 6): 5,
+            (5, 7): 5,
+            (5, 8): 5,
+            (6, 6): 6,
+            (6, 7): 5,
+            (6, 8): 6,
+            (7, 7): 7,
+            (7, 8): 7,
+            (8, 8): 8,
+        }
+        cls.gold.update(((0, n), 0) for n in cls.DG)
+
+    def assert_lca_dicts_same(self, d1, d2, G=None):
+        """Checks if d1 and d2 contain the same pairs and
+        have a node at the same distance from root for each.
+        If G is None use self.DG."""
+        if G is None:
+            G = self.DG
+            root_distance = self.root_distance
+        else:
+            roots = [n for n, deg in G.in_degree if deg == 0]
+            assert len(roots) == 1
+            root_distance = nx.shortest_path_length(G, source=roots[0])
+
+        for a, b in ((min(pair), max(pair)) for pair in chain(d1, d2)):
+            assert (
+                root_distance[get_pair(d1, a, b)] == root_distance[get_pair(d2, a, b)]
+            )
+
+    def test_all_pairs_lca_gold_example(self):
+        self.assert_lca_dicts_same(dict(all_pairs_lca(self.DG)), self.gold)
+
+    def test_all_pairs_lca_all_pairs_given(self):
+        all_pairs = list(product(self.DG.nodes(), self.DG.nodes()))
+        ans = all_pairs_lca(self.DG, pairs=all_pairs)
+        self.assert_lca_dicts_same(dict(ans), self.gold)
+
+    def test_all_pairs_lca_generator(self):
+        all_pairs = product(self.DG.nodes(), self.DG.nodes())
+        ans = all_pairs_lca(self.DG, pairs=all_pairs)
+        self.assert_lca_dicts_same(dict(ans), self.gold)
+
+    def test_all_pairs_lca_input_graph_with_two_roots(self):
+        G = self.DG.copy()
+        G.add_edge(9, 10)
+        G.add_edge(9, 4)
+        gold = self.gold.copy()
+        gold[9, 9] = 9
+        gold[9, 10] = 9
+        gold[9, 4] = 9
+        gold[9, 3] = 9
+        gold[10, 4] = 9
+        gold[10, 3] = 9
+        gold[10, 10] = 10
+
+        testing = dict(all_pairs_lca(G))
+
+        G.add_edge(-1, 9)
+        G.add_edge(-1, 0)
+        self.assert_lca_dicts_same(testing, gold, G)
+
+    def test_all_pairs_lca_nonexisting_pairs_exception(self):
+        pytest.raises(nx.NodeNotFound, all_pairs_lca, self.DG, [(-1, -1)])
+
+    def test_all_pairs_lca_pairs_without_lca(self):
+        G = self.DG.copy()
+        G.add_node(-1)
+        gen = all_pairs_lca(G, [(-1, -1), (-1, 0)])
+        assert dict(gen) == {(-1, -1): -1}
+
+    def test_all_pairs_lca_null_graph(self):
+        pytest.raises(nx.NetworkXPointlessConcept, all_pairs_lca, nx.DiGraph())
+
+    def test_all_pairs_lca_non_dags(self):
+        pytest.raises(nx.NetworkXError, all_pairs_lca, nx.DiGraph([(3, 4), (4, 3)]))
+
+    def test_all_pairs_lca_nonempty_graph_without_lca(self):
+        G = nx.DiGraph()
+        G.add_node(3)
+        ans = list(all_pairs_lca(G))
+        assert ans == [((3, 3), 3)]
+
+    def test_all_pairs_lca_bug_gh4942(self):
+        G = nx.DiGraph([(0, 2), (1, 2), (2, 3)])
+        ans = list(all_pairs_lca(G))
+        assert len(ans) == 9
+
+    def test_all_pairs_lca_default_kwarg(self):
+        G = nx.DiGraph([(0, 1), (2, 1)])
+        sentinel = object()
+        assert nx.lowest_common_ancestor(G, 0, 2, default=sentinel) is sentinel
+
+    def test_all_pairs_lca_identity(self):
+        G = nx.DiGraph()
+        G.add_node(3)
+        assert nx.lowest_common_ancestor(G, 3, 3) == 3
+
+    def test_all_pairs_lca_issue_4574(self):
+        G = nx.DiGraph()
+        G.add_nodes_from(range(17))
+        G.add_edges_from(
+            [
+                (2, 0),
+                (1, 2),
+                (3, 2),
+                (5, 2),
+                (8, 2),
+                (11, 2),
+                (4, 5),
+                (6, 5),
+                (7, 8),
+                (10, 8),
+                (13, 11),
+                (14, 11),
+                (15, 11),
+                (9, 10),
+                (12, 13),
+                (16, 15),
+            ]
+        )
+
+        assert nx.lowest_common_ancestor(G, 7, 9) == None
+
+    def test_all_pairs_lca_one_pair_gh4942(self):
+        G = nx.DiGraph()
+        # Note: order edge addition is critical to the test
+        G.add_edge(0, 1)
+        G.add_edge(2, 0)
+        G.add_edge(2, 3)
+        G.add_edge(4, 0)
+        G.add_edge(5, 2)
+
+        assert nx.lowest_common_ancestor(G, 1, 3) == 2
+
+
+class TestMultiDiGraph_DAGLCA(TestDAGLCA):
+    @classmethod
+    def setup_class(cls):
+        cls.DG = nx.MultiDiGraph()
+        nx.add_path(cls.DG, (0, 1, 2, 3))
+        # add multiedges
+        nx.add_path(cls.DG, (0, 1, 2, 3))
+        nx.add_path(cls.DG, (0, 4, 3))
+        nx.add_path(cls.DG, (0, 5, 6, 8, 3))
+        nx.add_path(cls.DG, (5, 7, 8))
+        cls.DG.add_edge(6, 2)
+        cls.DG.add_edge(7, 2)
+
+        cls.root_distance = nx.shortest_path_length(cls.DG, source=0)
+
+        cls.gold = {
+            (1, 1): 1,
+            (1, 2): 1,
+            (1, 3): 1,
+            (1, 4): 0,
+            (1, 5): 0,
+            (1, 6): 0,
+            (1, 7): 0,
+            (1, 8): 0,
+            (2, 2): 2,
+            (2, 3): 2,
+            (2, 4): 0,
+            (2, 5): 5,
+            (2, 6): 6,
+            (2, 7): 7,
+            (2, 8): 7,
+            (3, 3): 3,
+            (3, 4): 4,
+            (3, 5): 5,
+            (3, 6): 6,
+            (3, 7): 7,
+            (3, 8): 8,
+            (4, 4): 4,
+            (4, 5): 0,
+            (4, 6): 0,
+            (4, 7): 0,
+            (4, 8): 0,
+            (5, 5): 5,
+            (5, 6): 5,
+            (5, 7): 5,
+            (5, 8): 5,
+            (6, 6): 6,
+            (6, 7): 5,
+            (6, 8): 6,
+            (7, 7): 7,
+            (7, 8): 7,
+            (8, 8): 8,
+        }
+        cls.gold.update(((0, n), 0) for n in cls.DG)
+
+
+def test_all_pairs_lca_self_ancestors():
+    """Self-ancestors should always be the node itself, i.e. lca of (0, 0) is 0.
+    See gh-4458."""
+    # DAG for test - note order of node/edge addition is relevant
+    G = nx.DiGraph()
+    G.add_nodes_from(range(5))
+    G.add_edges_from([(1, 0), (2, 0), (3, 2), (4, 1), (4, 3)])
+
+    ap_lca = nx.all_pairs_lowest_common_ancestor
+    assert all(u == v == a for (u, v), a in ap_lca(G) if u == v)
+    MG = nx.MultiDiGraph(G)
+    assert all(u == v == a for (u, v), a in ap_lca(MG) if u == v)
+    MG.add_edges_from([(1, 0), (2, 0)])
+    assert all(u == v == a for (u, v), a in ap_lca(MG) if u == v)

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_matching.py

@@ -0,0 +1,605 @@
+import math
+from itertools import permutations
+
+from pytest import raises
+
+import networkx as nx
+from networkx.algorithms.matching import matching_dict_to_set
+from networkx.utils import edges_equal
+
+
+class TestMaxWeightMatching:
+    """Unit tests for the
+    :func:`~networkx.algorithms.matching.max_weight_matching` function.
+
+    """
+
+    def test_trivial1(self):
+        """Empty graph"""
+        G = nx.Graph()
+        assert nx.max_weight_matching(G) == set()
+        assert nx.min_weight_matching(G) == set()
+
+    def test_selfloop(self):
+        G = nx.Graph()
+        G.add_edge(0, 0, weight=100)
+        assert nx.max_weight_matching(G) == set()
+        assert nx.min_weight_matching(G) == set()
+
+    def test_single_edge(self):
+        G = nx.Graph()
+        G.add_edge(0, 1)
+        assert edges_equal(
+            nx.max_weight_matching(G), matching_dict_to_set({0: 1, 1: 0})
+        )
+        assert edges_equal(
+            nx.min_weight_matching(G), matching_dict_to_set({0: 1, 1: 0})
+        )
+
+    def test_two_path(self):
+        G = nx.Graph()
+        G.add_edge("one", "two", weight=10)
+        G.add_edge("two", "three", weight=11)
+        assert edges_equal(
+            nx.max_weight_matching(G),
+            matching_dict_to_set({"three": "two", "two": "three"}),
+        )
+        assert edges_equal(
+            nx.min_weight_matching(G),
+            matching_dict_to_set({"one": "two", "two": "one"}),
+        )
+
+    def test_path(self):
+        G = nx.Graph()
+        G.add_edge(1, 2, weight=5)
+        G.add_edge(2, 3, weight=11)
+        G.add_edge(3, 4, weight=5)
+        assert edges_equal(
+            nx.max_weight_matching(G), matching_dict_to_set({2: 3, 3: 2})
+        )
+        assert edges_equal(
+            nx.max_weight_matching(G, 1), matching_dict_to_set({1: 2, 2: 1, 3: 4, 4: 3})
+        )
+        assert edges_equal(
+            nx.min_weight_matching(G), matching_dict_to_set({1: 2, 3: 4})
+        )
+        assert edges_equal(
+            nx.min_weight_matching(G, 1), matching_dict_to_set({1: 2, 3: 4})
+        )
+
+    def test_square(self):
+        G = nx.Graph()
+        G.add_edge(1, 4, weight=2)
+        G.add_edge(2, 3, weight=2)
+        G.add_edge(1, 2, weight=1)
+        G.add_edge(3, 4, weight=4)
+        assert edges_equal(
+            nx.max_weight_matching(G), matching_dict_to_set({1: 2, 3: 4})
+        )
+        assert edges_equal(
+            nx.min_weight_matching(G), matching_dict_to_set({1: 4, 2: 3})
+        )
+
+    def test_edge_attribute_name(self):
+        G = nx.Graph()
+        G.add_edge("one", "two", weight=10, abcd=11)
+        G.add_edge("two", "three", weight=11, abcd=10)
+        assert edges_equal(
+            nx.max_weight_matching(G, weight="abcd"),
+            matching_dict_to_set({"one": "two", "two": "one"}),
+        )
+        assert edges_equal(
+            nx.min_weight_matching(G, weight="abcd"),
+            matching_dict_to_set({"three": "two"}),
+        )
+
+    def test_floating_point_weights(self):
+        G = nx.Graph()
+        G.add_edge(1, 2, weight=math.pi)
+        G.add_edge(2, 3, weight=math.exp(1))
+        G.add_edge(1, 3, weight=3.0)
+        G.add_edge(1, 4, weight=math.sqrt(2.0))
+        assert edges_equal(
+            nx.max_weight_matching(G), matching_dict_to_set({1: 4, 2: 3, 3: 2, 4: 1})
+        )
+        assert edges_equal(
+            nx.min_weight_matching(G), matching_dict_to_set({1: 4, 2: 3, 3: 2, 4: 1})
+        )
+
+    def test_negative_weights(self):
+        G = nx.Graph()
+        G.add_edge(1, 2, weight=2)
+        G.add_edge(1, 3, weight=-2)
+        G.add_edge(2, 3, weight=1)
+        G.add_edge(2, 4, weight=-1)
+        G.add_edge(3, 4, weight=-6)
+        assert edges_equal(
+            nx.max_weight_matching(G), matching_dict_to_set({1: 2, 2: 1})
+        )
+        assert edges_equal(
+            nx.max_weight_matching(G, maxcardinality=True),
+            matching_dict_to_set({1: 3, 2: 4, 3: 1, 4: 2}),
+        )
+        assert edges_equal(
+            nx.min_weight_matching(G), matching_dict_to_set({1: 2, 3: 4})
+        )
+
+    def test_s_blossom(self):
+        """Create S-blossom and use it for augmentation:"""
+        G = nx.Graph()
+        G.add_weighted_edges_from([(1, 2, 8), (1, 3, 9), (2, 3, 10), (3, 4, 7)])
+        answer = matching_dict_to_set({1: 2, 2: 1, 3: 4, 4: 3})
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+        G.add_weighted_edges_from([(1, 6, 5), (4, 5, 6)])
+        answer = matching_dict_to_set({1: 6, 2: 3, 3: 2, 4: 5, 5: 4, 6: 1})
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_s_t_blossom(self):
+        """Create S-blossom, relabel as T-blossom, use for augmentation:"""
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [(1, 2, 9), (1, 3, 8), (2, 3, 10), (1, 4, 5), (4, 5, 4), (1, 6, 3)]
+        )
+        answer = matching_dict_to_set({1: 6, 2: 3, 3: 2, 4: 5, 5: 4, 6: 1})
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+        G.add_edge(4, 5, weight=3)
+        G.add_edge(1, 6, weight=4)
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+        G.remove_edge(1, 6)
+        G.add_edge(3, 6, weight=4)
+        answer = matching_dict_to_set({1: 2, 2: 1, 3: 6, 4: 5, 5: 4, 6: 3})
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_nested_s_blossom(self):
+        """Create nested S-blossom, use for augmentation:"""
+
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 9),
+                (1, 3, 9),
+                (2, 3, 10),
+                (2, 4, 8),
+                (3, 5, 8),
+                (4, 5, 10),
+                (5, 6, 6),
+            ]
+        )
+        dict_format = {1: 3, 2: 4, 3: 1, 4: 2, 5: 6, 6: 5}
+        expected = {frozenset(e) for e in matching_dict_to_set(dict_format)}
+        answer = {frozenset(e) for e in nx.max_weight_matching(G)}
+        assert answer == expected
+        answer = {frozenset(e) for e in nx.min_weight_matching(G)}
+        assert answer == expected
+
+    def test_nested_s_blossom_relabel(self):
+        """Create S-blossom, relabel as S, include in nested S-blossom:"""
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 10),
+                (1, 7, 10),
+                (2, 3, 12),
+                (3, 4, 20),
+                (3, 5, 20),
+                (4, 5, 25),
+                (5, 6, 10),
+                (6, 7, 10),
+                (7, 8, 8),
+            ]
+        )
+        answer = matching_dict_to_set({1: 2, 2: 1, 3: 4, 4: 3, 5: 6, 6: 5, 7: 8, 8: 7})
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_nested_s_blossom_expand(self):
+        """Create nested S-blossom, augment, expand recursively:"""
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 8),
+                (1, 3, 8),
+                (2, 3, 10),
+                (2, 4, 12),
+                (3, 5, 12),
+                (4, 5, 14),
+                (4, 6, 12),
+                (5, 7, 12),
+                (6, 7, 14),
+                (7, 8, 12),
+            ]
+        )
+        answer = matching_dict_to_set({1: 2, 2: 1, 3: 5, 4: 6, 5: 3, 6: 4, 7: 8, 8: 7})
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_s_blossom_relabel_expand(self):
+        """Create S-blossom, relabel as T, expand:"""
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 23),
+                (1, 5, 22),
+                (1, 6, 15),
+                (2, 3, 25),
+                (3, 4, 22),
+                (4, 5, 25),
+                (4, 8, 14),
+                (5, 7, 13),
+            ]
+        )
+        answer = matching_dict_to_set({1: 6, 2: 3, 3: 2, 4: 8, 5: 7, 6: 1, 7: 5, 8: 4})
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_nested_s_blossom_relabel_expand(self):
+        """Create nested S-blossom, relabel as T, expand:"""
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 19),
+                (1, 3, 20),
+                (1, 8, 8),
+                (2, 3, 25),
+                (2, 4, 18),
+                (3, 5, 18),
+                (4, 5, 13),
+                (4, 7, 7),
+                (5, 6, 7),
+            ]
+        )
+        answer = matching_dict_to_set({1: 8, 2: 3, 3: 2, 4: 7, 5: 6, 6: 5, 7: 4, 8: 1})
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_nasty_blossom1(self):
+        """Create blossom, relabel as T in more than one way, expand,
+        augment:
+        """
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 45),
+                (1, 5, 45),
+                (2, 3, 50),
+                (3, 4, 45),
+                (4, 5, 50),
+                (1, 6, 30),
+                (3, 9, 35),
+                (4, 8, 35),
+                (5, 7, 26),
+                (9, 10, 5),
+            ]
+        )
+        ansdict = {1: 6, 2: 3, 3: 2, 4: 8, 5: 7, 6: 1, 7: 5, 8: 4, 9: 10, 10: 9}
+        answer = matching_dict_to_set(ansdict)
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_nasty_blossom2(self):
+        """Again but slightly different:"""
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 45),
+                (1, 5, 45),
+                (2, 3, 50),
+                (3, 4, 45),
+                (4, 5, 50),
+                (1, 6, 30),
+                (3, 9, 35),
+                (4, 8, 26),
+                (5, 7, 40),
+                (9, 10, 5),
+            ]
+        )
+        ans = {1: 6, 2: 3, 3: 2, 4: 8, 5: 7, 6: 1, 7: 5, 8: 4, 9: 10, 10: 9}
+        answer = matching_dict_to_set(ans)
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_nasty_blossom_least_slack(self):
+        """Create blossom, relabel as T, expand such that a new
+        least-slack S-to-free dge is produced, augment:
+        """
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 45),
+                (1, 5, 45),
+                (2, 3, 50),
+                (3, 4, 45),
+                (4, 5, 50),
+                (1, 6, 30),
+                (3, 9, 35),
+                (4, 8, 28),
+                (5, 7, 26),
+                (9, 10, 5),
+            ]
+        )
+        ans = {1: 6, 2: 3, 3: 2, 4: 8, 5: 7, 6: 1, 7: 5, 8: 4, 9: 10, 10: 9}
+        answer = matching_dict_to_set(ans)
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_nasty_blossom_augmenting(self):
+        """Create nested blossom, relabel as T in more than one way"""
+        # expand outer blossom such that inner blossom ends up on an
+        # augmenting path:
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 45),
+                (1, 7, 45),
+                (2, 3, 50),
+                (3, 4, 45),
+                (4, 5, 95),
+                (4, 6, 94),
+                (5, 6, 94),
+                (6, 7, 50),
+                (1, 8, 30),
+                (3, 11, 35),
+                (5, 9, 36),
+                (7, 10, 26),
+                (11, 12, 5),
+            ]
+        )
+        ans = {
+            1: 8,
+            2: 3,
+            3: 2,
+            4: 6,
+            5: 9,
+            6: 4,
+            7: 10,
+            8: 1,
+            9: 5,
+            10: 7,
+            11: 12,
+            12: 11,
+        }
+        answer = matching_dict_to_set(ans)
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_nasty_blossom_expand_recursively(self):
+        """Create nested S-blossom, relabel as S, expand recursively:"""
+        G = nx.Graph()
+        G.add_weighted_edges_from(
+            [
+                (1, 2, 40),
+                (1, 3, 40),
+                (2, 3, 60),
+                (2, 4, 55),
+                (3, 5, 55),
+                (4, 5, 50),
+                (1, 8, 15),
+                (5, 7, 30),
+                (7, 6, 10),
+                (8, 10, 10),
+                (4, 9, 30),
+            ]
+        )
+        ans = {1: 2, 2: 1, 3: 5, 4: 9, 5: 3, 6: 7, 7: 6, 8: 10, 9: 4, 10: 8}
+        answer = matching_dict_to_set(ans)
+        assert edges_equal(nx.max_weight_matching(G), answer)
+        assert edges_equal(nx.min_weight_matching(G), answer)
+
+    def test_wrong_graph_type(self):
+        error = nx.NetworkXNotImplemented
+        raises(error, nx.max_weight_matching, nx.MultiGraph())
+        raises(error, nx.max_weight_matching, nx.MultiDiGraph())
+        raises(error, nx.max_weight_matching, nx.DiGraph())
+        raises(error, nx.min_weight_matching, nx.DiGraph())
+
+
+class TestIsMatching:
+    """Unit tests for the
+    :func:`~networkx.algorithms.matching.is_matching` function.
+
+    """
+
+    def test_dict(self):
+        G = nx.path_graph(4)
+        assert nx.is_matching(G, {0: 1, 1: 0, 2: 3, 3: 2})
+
+    def test_empty_matching(self):
+        G = nx.path_graph(4)
+        assert nx.is_matching(G, set())
+
+    def test_single_edge(self):
+        G = nx.path_graph(4)
+        assert nx.is_matching(G, {(1, 2)})
+
+    def test_edge_order(self):
+        G = nx.path_graph(4)
+        assert nx.is_matching(G, {(0, 1), (2, 3)})
+        assert nx.is_matching(G, {(1, 0), (2, 3)})
+        assert nx.is_matching(G, {(0, 1), (3, 2)})
+        assert nx.is_matching(G, {(1, 0), (3, 2)})
+
+    def test_valid_matching(self):
+        G = nx.path_graph(4)
+        assert nx.is_matching(G, {(0, 1), (2, 3)})
+
+    def test_invalid_input(self):
+        error = nx.NetworkXError
+        G = nx.path_graph(4)
+        # edge to node not in G
+        raises(error, nx.is_matching, G, {(0, 5), (2, 3)})
+        # edge not a 2-tuple
+        raises(error, nx.is_matching, G, {(0, 1, 2), (2, 3)})
+        raises(error, nx.is_matching, G, {(0,), (2, 3)})
+
+    def test_selfloops(self):
+        error = nx.NetworkXError
+        G = nx.path_graph(4)
+        # selfloop for node not in G
+        raises(error, nx.is_matching, G, {(5, 5), (2, 3)})
+        # selfloop edge not in G
+        assert not nx.is_matching(G, {(0, 0), (1, 2), (2, 3)})
+        # selfloop edge in G
+        G.add_edge(0, 0)
+        assert not nx.is_matching(G, {(0, 0), (1, 2)})
+
+    def test_invalid_matching(self):
+        G = nx.path_graph(4)
+        assert not nx.is_matching(G, {(0, 1), (1, 2), (2, 3)})
+
+    def test_invalid_edge(self):
+        G = nx.path_graph(4)
+        assert not nx.is_matching(G, {(0, 3), (1, 2)})
+        raises(nx.NetworkXError, nx.is_matching, G, {(0, 55)})
+
+        G = nx.DiGraph(G.edges)
+        assert nx.is_matching(G, {(0, 1)})
+        assert not nx.is_matching(G, {(1, 0)})
+
+
+class TestIsMaximalMatching:
+    """Unit tests for the
+    :func:`~networkx.algorithms.matching.is_maximal_matching` function.
+
+    """
+
+    def test_dict(self):
+        G = nx.path_graph(4)
+        assert nx.is_maximal_matching(G, {0: 1, 1: 0, 2: 3, 3: 2})
+
+    def test_invalid_input(self):
+        error = nx.NetworkXError
+        G = nx.path_graph(4)
+        # edge to node not in G
+        raises(error, nx.is_maximal_matching, G, {(0, 5)})
+        raises(error, nx.is_maximal_matching, G, {(5, 0)})
+        # edge not a 2-tuple
+        raises(error, nx.is_maximal_matching, G, {(0, 1, 2), (2, 3)})
+        raises(error, nx.is_maximal_matching, G, {(0,), (2, 3)})
+
+    def test_valid(self):
+        G = nx.path_graph(4)
+        assert nx.is_maximal_matching(G, {(0, 1), (2, 3)})
+
+    def test_not_matching(self):
+        G = nx.path_graph(4)
+        assert not nx.is_maximal_matching(G, {(0, 1), (1, 2), (2, 3)})
+        assert not nx.is_maximal_matching(G, {(0, 3)})
+        G.add_edge(0, 0)
+        assert not nx.is_maximal_matching(G, {(0, 0)})
+
+    def test_not_maximal(self):
+        G = nx.path_graph(4)
+        assert not nx.is_maximal_matching(G, {(0, 1)})
+
+
+class TestIsPerfectMatching:
+    """Unit tests for the
+    :func:`~networkx.algorithms.matching.is_perfect_matching` function.
+
+    """
+
+    def test_dict(self):
+        G = nx.path_graph(4)
+        assert nx.is_perfect_matching(G, {0: 1, 1: 0, 2: 3, 3: 2})
+
+    def test_valid(self):
+        G = nx.path_graph(4)
+        assert nx.is_perfect_matching(G, {(0, 1), (2, 3)})
+
+    def test_valid_not_path(self):
+        G = nx.cycle_graph(4)
+        G.add_edge(0, 4)
+        G.add_edge(1, 4)
+        G.add_edge(5, 2)
+
+        assert nx.is_perfect_matching(G, {(1, 4), (0, 3), (5, 2)})
+
+    def test_invalid_input(self):
+        error = nx.NetworkXError
+        G = nx.path_graph(4)
+        # edge to node not in G
+        raises(error, nx.is_perfect_matching, G, {(0, 5)})
+        raises(error, nx.is_perfect_matching, G, {(5, 0)})
+        # edge not a 2-tuple
+        raises(error, nx.is_perfect_matching, G, {(0, 1, 2), (2, 3)})
+        raises(error, nx.is_perfect_matching, G, {(0,), (2, 3)})
+
+    def test_selfloops(self):
+        error = nx.NetworkXError
+        G = nx.path_graph(4)
+        # selfloop for node not in G
+        raises(error, nx.is_perfect_matching, G, {(5, 5), (2, 3)})
+        # selfloop edge not in G
+        assert not nx.is_perfect_matching(G, {(0, 0), (1, 2), (2, 3)})
+        # selfloop edge in G
+        G.add_edge(0, 0)
+        assert not nx.is_perfect_matching(G, {(0, 0), (1, 2)})
+
+    def test_not_matching(self):
+        G = nx.path_graph(4)
+        assert not nx.is_perfect_matching(G, {(0, 3)})
+        assert not nx.is_perfect_matching(G, {(0, 1), (1, 2), (2, 3)})
+
+    def test_maximal_but_not_perfect(self):
+        G = nx.cycle_graph(4)
+        G.add_edge(0, 4)
+        G.add_edge(1, 4)
+
+        assert not nx.is_perfect_matching(G, {(1, 4), (0, 3)})
+
+
+class TestMaximalMatching:
+    """Unit tests for the
+    :func:`~networkx.algorithms.matching.maximal_matching`.
+
+    """
+
+    def test_valid_matching(self):
+        edges = [(1, 2), (1, 5), (2, 3), (2, 5), (3, 4), (3, 6), (5, 6)]
+        G = nx.Graph(edges)
+        matching = nx.maximal_matching(G)
+        assert nx.is_maximal_matching(G, matching)
+
+    def test_single_edge_matching(self):
+        # In the star graph, any maximal matching has just one edge.
+        G = nx.star_graph(5)
+        matching = nx.maximal_matching(G)
+        assert 1 == len(matching)
+        assert nx.is_maximal_matching(G, matching)
+
+    def test_self_loops(self):
+        # Create the path graph with two self-loops.
+        G = nx.path_graph(3)
+        G.add_edges_from([(0, 0), (1, 1)])
+        matching = nx.maximal_matching(G)
+        assert len(matching) == 1
+        # The matching should never include self-loops.
+        assert not any(u == v for u, v in matching)
+        assert nx.is_maximal_matching(G, matching)
+
+    def test_ordering(self):
+        """Tests that a maximal matching is computed correctly
+        regardless of the order in which nodes are added to the graph.
+
+        """
+        for nodes in permutations(range(3)):
+            G = nx.Graph()
+            G.add_nodes_from(nodes)
+            G.add_edges_from([(0, 1), (0, 2)])
+            matching = nx.maximal_matching(G)
+            assert len(matching) == 1
+            assert nx.is_maximal_matching(G, matching)
+
+    def test_wrong_graph_type(self):
+        error = nx.NetworkXNotImplemented
+        raises(error, nx.maximal_matching, nx.MultiGraph())
+        raises(error, nx.maximal_matching, nx.MultiDiGraph())
+        raises(error, nx.maximal_matching, nx.DiGraph())

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_mis.py

@@ -0,0 +1,62 @@
+"""
+Tests for maximal (not maximum) independent sets.
+
+"""
+
+import random
+
+import pytest
+
+import networkx as nx
+
+
+def test_random_seed():
+    G = nx.empty_graph(5)
+    assert nx.maximal_independent_set(G, seed=1) == [1, 0, 3, 2, 4]
+
+
+@pytest.mark.parametrize("graph", [nx.complete_graph(5), nx.complete_graph(55)])
+def test_K5(graph):
+    """Maximal independent set for complete graphs"""
+    assert all(nx.maximal_independent_set(graph, [n]) == [n] for n in graph)
+
+
+def test_exceptions():
+    """Bad input should raise exception."""
+    G = nx.florentine_families_graph()
+    pytest.raises(nx.NetworkXUnfeasible, nx.maximal_independent_set, G, ["Smith"])
+    pytest.raises(
+        nx.NetworkXUnfeasible, nx.maximal_independent_set, G, ["Salviati", "Pazzi"]
+    )
+    # MaximalIndependentSet is not implemented for directed graphs
+    pytest.raises(nx.NetworkXNotImplemented, nx.maximal_independent_set, nx.DiGraph(G))
+
+
+def test_florentine_family():
+    G = nx.florentine_families_graph()
+    indep = nx.maximal_independent_set(G, ["Medici", "Bischeri"])
+    assert set(indep) == {
+        "Medici",
+        "Bischeri",
+        "Castellani",
+        "Pazzi",
+        "Ginori",
+        "Lamberteschi",
+    }
+
+
+def test_bipartite():
+    G = nx.complete_bipartite_graph(12, 34)
+    indep = nx.maximal_independent_set(G, [4, 5, 9, 10])
+    assert sorted(indep) == list(range(12))
+
+
+def test_random_graphs():
+    """Generate 5 random graphs of different types and sizes and
+    make sure that all sets are independent and maximal."""
+    for i in range(0, 50, 10):
+        G = nx.erdos_renyi_graph(i * 10 + 1, random.random())
+        IS = nx.maximal_independent_set(G)
+        assert G.subgraph(IS).number_of_edges() == 0
+        nbrs_of_MIS = set.union(*(set(G.neighbors(v)) for v in IS))
+        assert all(v in nbrs_of_MIS for v in set(G.nodes()).difference(IS))

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_non_randomness.py

@@ -0,0 +1,42 @@
+import pytest
+
+import networkx as nx
+
+np = pytest.importorskip("numpy")
+
+
+@pytest.mark.parametrize(
+    "k, weight, expected",
+    [
+        (None, None, 7.21),  # infers 3 communities
+        (2, None, 11.7),
+        (None, "weight", 25.45),
+        (2, "weight", 38.8),
+    ],
+)
+def test_non_randomness(k, weight, expected):
+    G = nx.karate_club_graph()
+    np.testing.assert_almost_equal(
+        nx.non_randomness(G, k, weight)[0], expected, decimal=2
+    )
+
+
+def test_non_connected():
+    G = nx.Graph([(1, 2)])
+    G.add_node(3)
+    with pytest.raises(nx.NetworkXException, match="Non connected"):
+        nx.non_randomness(G)
+
+
+def test_self_loops():
+    G = nx.Graph()
+    G.add_edge(1, 2)
+    G.add_edge(1, 1)
+    with pytest.raises(nx.NetworkXError, match="Graph must not contain self-loops"):
+        nx.non_randomness(G)
+
+
+def test_empty_graph():
+    G = nx.empty_graph(1)
+    with pytest.raises(nx.NetworkXError, match=".*not applicable to empty graphs"):
+        nx.non_randomness(G)

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_reciprocity.py

@@ -0,0 +1,37 @@
+import pytest
+
+import networkx as nx
+
+
+class TestReciprocity:
+    # test overall reciprocity by passing whole graph
+    def test_reciprocity_digraph(self):
+        DG = nx.DiGraph([(1, 2), (2, 1)])
+        reciprocity = nx.reciprocity(DG)
+        assert reciprocity == 1.0
+
+    # test empty graph's overall reciprocity which will throw an error
+    def test_overall_reciprocity_empty_graph(self):
+        with pytest.raises(nx.NetworkXError):
+            DG = nx.DiGraph()
+            nx.overall_reciprocity(DG)
+
+    # test for reciprocity for a list of nodes
+    def test_reciprocity_graph_nodes(self):
+        DG = nx.DiGraph([(1, 2), (2, 3), (3, 2)])
+        reciprocity = nx.reciprocity(DG, [1, 2])
+        expected_reciprocity = {1: 0.0, 2: 0.6666666666666666}
+        assert reciprocity == expected_reciprocity
+
+    # test for reciprocity for a single node
+    def test_reciprocity_graph_node(self):
+        DG = nx.DiGraph([(1, 2), (2, 3), (3, 2)])
+        reciprocity = nx.reciprocity(DG, 2)
+        assert reciprocity == 0.6666666666666666
+
+    # test for reciprocity for an isolated node
+    def test_reciprocity_graph_isolated_nodes(self):
+        with pytest.raises(nx.NetworkXError):
+            DG = nx.DiGraph([(1, 2)])
+            DG.add_node(4)
+            nx.reciprocity(DG, 4)

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_regular.py

@@ -0,0 +1,92 @@
+import pytest
+
+import networkx
+import networkx as nx
+import networkx.algorithms.regular as reg
+import networkx.generators as gen
+
+
+class TestKFactor:
+    def test_k_factor_trivial(self):
+        g = gen.cycle_graph(4)
+        f = reg.k_factor(g, 2)
+        assert g.edges == f.edges
+
+    def test_k_factor1(self):
+        g = gen.grid_2d_graph(4, 4)
+        g_kf = reg.k_factor(g, 2)
+        for edge in g_kf.edges():
+            assert g.has_edge(edge[0], edge[1])
+        for _, degree in g_kf.degree():
+            assert degree == 2
+
+    def test_k_factor2(self):
+        g = gen.complete_graph(6)
+        g_kf = reg.k_factor(g, 3)
+        for edge in g_kf.edges():
+            assert g.has_edge(edge[0], edge[1])
+        for _, degree in g_kf.degree():
+            assert degree == 3
+
+    def test_k_factor3(self):
+        g = gen.grid_2d_graph(4, 4)
+        with pytest.raises(nx.NetworkXUnfeasible):
+            reg.k_factor(g, 3)
+
+    def test_k_factor4(self):
+        g = gen.lattice.hexagonal_lattice_graph(4, 4)
+        # Perfect matching doesn't exist for 4,4 hexagonal lattice graph
+        with pytest.raises(nx.NetworkXUnfeasible):
+            reg.k_factor(g, 2)
+
+    def test_k_factor5(self):
+        g = gen.complete_graph(6)
+        # small k to exercise SmallKGadget
+        g_kf = reg.k_factor(g, 2)
+        for edge in g_kf.edges():
+            assert g.has_edge(edge[0], edge[1])
+        for _, degree in g_kf.degree():
+            assert degree == 2
+
+
+class TestIsRegular:
+    def test_is_regular1(self):
+        g = gen.cycle_graph(4)
+        assert reg.is_regular(g)
+
+    def test_is_regular2(self):
+        g = gen.complete_graph(5)
+        assert reg.is_regular(g)
+
+    def test_is_regular3(self):
+        g = gen.lollipop_graph(5, 5)
+        assert not reg.is_regular(g)
+
+    def test_is_regular4(self):
+        g = nx.DiGraph()
+        g.add_edges_from([(0, 1), (1, 2), (2, 0)])
+        assert reg.is_regular(g)
+
+
+def test_is_regular_empty_graph_raises():
+    G = nx.Graph()
+    with pytest.raises(nx.NetworkXPointlessConcept, match="Graph has no nodes"):
+        nx.is_regular(G)
+
+
+class TestIsKRegular:
+    def test_is_k_regular1(self):
+        g = gen.cycle_graph(4)
+        assert reg.is_k_regular(g, 2)
+        assert not reg.is_k_regular(g, 3)
+
+    def test_is_k_regular2(self):
+        g = gen.complete_graph(5)
+        assert reg.is_k_regular(g, 4)
+        assert not reg.is_k_regular(g, 3)
+        assert not reg.is_k_regular(g, 6)
+
+    def test_is_k_regular3(self):
+        g = gen.lollipop_graph(5, 5)
+        assert not reg.is_k_regular(g, 5)
+        assert not reg.is_k_regular(g, 6)

mplug_owl2/lib/python3.10/site-packages/networkx/algorithms/tests/test_structuralholes.py

@@ -0,0 +1,137 @@
+"""Unit tests for the :mod:`networkx.algorithms.structuralholes` module."""
+
+import math
+
+import pytest
+
+import networkx as nx
+from networkx.classes.tests import dispatch_interface
+
+
+class TestStructuralHoles:
+    """Unit tests for computing measures of structural holes.
+
+    The expected values for these functions were originally computed using the
+    proprietary software `UCINET`_ and the free software `IGraph`_ , and then
+    computed by hand to make sure that the results are correct.
+
+    .. _UCINET: https://sites.google.com/site/ucinetsoftware/home
+    .. _IGraph: http://igraph.org/
+
+    """
+
+    def setup_method(self):
+        self.D = nx.DiGraph()
+        self.D.add_edges_from([(0, 1), (0, 2), (1, 0), (2, 1)])
+        self.D_weights = {(0, 1): 2, (0, 2): 2, (1, 0): 1, (2, 1): 1}
+        # Example from http://www.analytictech.com/connections/v20(1)/holes.htm
+        self.G = nx.Graph()
+        self.G.add_edges_from(
+            [
+                ("A", "B"),
+                ("A", "F"),
+                ("A", "G"),
+                ("A", "E"),
+                ("E", "G"),
+                ("F", "G"),
+                ("B", "G"),
+                ("B", "D"),
+                ("D", "G"),
+                ("G", "C"),
+            ]
+        )
+        self.G_weights = {
+            ("A", "B"): 2,
+            ("A", "F"): 3,
+            ("A", "G"): 5,
+            ("A", "E"): 2,
+            ("E", "G"): 8,
+            ("F", "G"): 3,
+            ("B", "G"): 4,
+            ("B", "D"): 1,
+            ("D", "G"): 3,
+            ("G", "C"): 10,
+        }
+
+    def test_constraint_directed(self):
+        constraint = nx.constraint(self.D)
+        assert constraint[0] == pytest.approx(1.003, abs=1e-3)
+        assert constraint[1] == pytest.approx(1.003, abs=1e-3)
+        assert constraint[2] == pytest.approx(1.389, abs=1e-3)
+
+    def test_effective_size_directed(self):
+        effective_size = nx.effective_size(self.D)
+        assert effective_size[0] == pytest.approx(1.167, abs=1e-3)
+        assert effective_size[1] == pytest.approx(1.167, abs=1e-3)
+        assert effective_size[2] == pytest.approx(1, abs=1e-3)
+
+    def test_constraint_weighted_directed(self):
+        D = self.D.copy()
+        nx.set_edge_attributes(D, self.D_weights, "weight")
+        constraint = nx.constraint(D, weight="weight")
+        assert constraint[0] == pytest.approx(0.840, abs=1e-3)
+        assert constraint[1] == pytest.approx(1.143, abs=1e-3)
+        assert constraint[2] == pytest.approx(1.378, abs=1e-3)
+
+    def test_effective_size_weighted_directed(self):
+        D = self.D.copy()
+        nx.set_edge_attributes(D, self.D_weights, "weight")
+        effective_size = nx.effective_size(D, weight="weight")
+        assert effective_size[0] == pytest.approx(1.567, abs=1e-3)
+        assert effective_size[1] == pytest.approx(1.083, abs=1e-3)
+        assert effective_size[2] == pytest.approx(1, abs=1e-3)
+
+    def test_constraint_undirected(self):
+        constraint = nx.constraint(self.G)
+        assert constraint["G"] == pytest.approx(0.400, abs=1e-3)
+        assert constraint["A"] == pytest.approx(0.595, abs=1e-3)
+        assert constraint["C"] == pytest.approx(1, abs=1e-3)
+
+    def test_effective_size_undirected_borgatti(self):
+        effective_size = nx.effective_size(self.G)
+        assert effective_size["G"] == pytest.approx(4.67, abs=1e-2)
+        assert effective_size["A"] == pytest.approx(2.50, abs=1e-2)
+        assert effective_size["C"] == pytest.approx(1, abs=1e-2)
+
+    def test_effective_size_undirected(self):
+        G = self.G.copy()
+        nx.set_edge_attributes(G, 1, "weight")
+        effective_size = nx.effective_size(G, weight="weight")
+        assert effective_size["G"] == pytest.approx(4.67, abs=1e-2)
+        assert effective_size["A"] == pytest.approx(2.50, abs=1e-2)
+        assert effective_size["C"] == pytest.approx(1, abs=1e-2)
+
+    def test_constraint_weighted_undirected(self):
+        G = self.G.copy()
+        nx.set_edge_attributes(G, self.G_weights, "weight")
+        constraint = nx.constraint(G, weight="weight")
+        assert constraint["G"] == pytest.approx(0.299, abs=1e-3)
+        assert constraint["A"] == pytest.approx(0.795, abs=1e-3)
+        assert constraint["C"] == pytest.approx(1, abs=1e-3)
+
+    def test_effective_size_weighted_undirected(self):
+        G = self.G.copy()
+        nx.set_edge_attributes(G, self.G_weights, "weight")
+        effective_size = nx.effective_size(G, weight="weight")
+        assert effective_size["G"] == pytest.approx(5.47, abs=1e-2)
+        assert effective_size["A"] == pytest.approx(2.47, abs=1e-2)
+        assert effective_size["C"] == pytest.approx(1, abs=1e-2)
+
+    def test_constraint_isolated(self):
+        G = self.G.copy()
+        G.add_node(1)
+        constraint = nx.constraint(G)
+        assert math.isnan(constraint[1])
+
+    def test_effective_size_isolated(self):
+        G = self.G.copy()
+        G.add_node(1)
+        nx.set_edge_attributes(G, self.G_weights, "weight")
+        effective_size = nx.effective_size(G, weight="weight")
+        assert math.isnan(effective_size[1])
+
+    def test_effective_size_borgatti_isolated(self):
+        G = self.G.copy()
+        G.add_node(1)
+        effective_size = nx.effective_size(G)
+        assert math.isnan(effective_size[1])