text stringlengths 5 22M | id stringlengths 12 177 | metadata dict | __index_level_0__ int64 0 1.37k |
|---|---|---|---|
# coding=utf-8
# Copyright (c) Facebook, Inc. and its affiliates.
# Copyright (c) HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses... | AdaMix/examples/research_projects/mm-imdb/utils_mmimdb.py/0 | {
"file_path": "AdaMix/examples/research_projects/mm-imdb/utils_mmimdb.py",
"repo_id": "AdaMix",
"token_count": 2032
} | 39 |
# coding=utf-8
# Copyright 2018 The Google Flax Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
... | AdaMix/examples/research_projects/performer/modeling_flax_performer.py/0 | {
"file_path": "AdaMix/examples/research_projects/performer/modeling_flax_performer.py",
"repo_id": "AdaMix",
"token_count": 9147
} | 40 |
import logging
import os
from typing import List, Tuple
import numpy as np
import psutil
import torch
import torch.distributed as dist
from transformers import RagRetriever
logger = logging.getLogger(__name__)
class RagPyTorchDistributedRetriever(RagRetriever):
"""
A distributed retriever built on top of ... | AdaMix/examples/research_projects/rag/distributed_pytorch_retriever.py/0 | {
"file_path": "AdaMix/examples/research_projects/rag/distributed_pytorch_retriever.py",
"repo_id": "AdaMix",
"token_count": 2561
} | 41 |
import argparse
import logging
import os
import sys
import tempfile
from pathlib import Path
import pytest
import pytorch_lightning as pl
import torch
import lightning_base
from convert_pl_checkpoint_to_hf import convert_pl_to_hf
from distillation import distill_main
from finetune import SummarizationModule, main
fro... | AdaMix/examples/research_projects/seq2seq-distillation/_test_seq2seq_examples.py/0 | {
"file_path": "AdaMix/examples/research_projects/seq2seq-distillation/_test_seq2seq_examples.py",
"repo_id": "AdaMix",
"token_count": 7867
} | 42 |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE... | AdaMix/examples/seq2seq/run_summarization.py/0 | {
"file_path": "AdaMix/examples/seq2seq/run_summarization.py",
"repo_id": "AdaMix",
"token_count": 10001
} | 43 |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
... | AdaMix/examples/text-classification/run_xnli.py/0 | {
"file_path": "AdaMix/examples/text-classification/run_xnli.py",
"repo_id": "AdaMix",
"token_count": 5328
} | 44 |
#!/usr/bin/env bash
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless r... | AdaMix/scripts/fsmt/convert-facebook-wmt19.sh/0 | {
"file_path": "AdaMix/scripts/fsmt/convert-facebook-wmt19.sh",
"repo_id": "AdaMix",
"token_count": 1121
} | 45 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/setup.py/0 | {
"file_path": "AdaMix/setup.py",
"repo_id": "AdaMix",
"token_count": 4252
} | 46 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/src/transformers/commands/run.py/0 | {
"file_path": "AdaMix/src/transformers/commands/run.py",
"repo_id": "AdaMix",
"token_count": 1668
} | 47 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/src/transformers/data/datasets/glue.py/0 | {
"file_path": "AdaMix/src/transformers/data/datasets/glue.py",
"repo_id": "AdaMix",
"token_count": 2636
} | 48 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/src/transformers/data/test_generation_utils.py/0 | {
"file_path": "AdaMix/src/transformers/data/test_generation_utils.py",
"repo_id": "AdaMix",
"token_count": 1576
} | 49 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/src/transformers/modeling_outputs.py/0 | {
"file_path": "AdaMix/src/transformers/modeling_outputs.py",
"repo_id": "AdaMix",
"token_count": 19277
} | 50 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | AdaMix/src/transformers/models/albert/configuration_albert.py/0 | {
"file_path": "AdaMix/src/transformers/models/albert/configuration_albert.py",
"repo_id": "AdaMix",
"token_count": 3191
} | 51 |
# flake8: noqa
# There's no way to ignore "F401 '...' imported but unused" warnings in this
# module, but to preserve other warnings. So, don't check this module at all.
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use thi... | AdaMix/src/transformers/models/bart/__init__.py/0 | {
"file_path": "AdaMix/src/transformers/models/bart/__init__.py",
"repo_id": "AdaMix",
"token_count": 1095
} | 52 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICEN... | AdaMix/src/transformers/models/bert/tokenization_bert_fast.py/0 | {
"file_path": "AdaMix/src/transformers/models/bert/tokenization_bert_fast.py",
"repo_id": "AdaMix",
"token_count": 6104
} | 53 |
# coding=utf-8
# Copyright (c) 2020, VinAI Research and the HuggingFace Inc. team.
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of th... | AdaMix/src/transformers/models/bertweet/tokenization_bertweet.py/0 | {
"file_path": "AdaMix/src/transformers/models/bertweet/tokenization_bertweet.py",
"repo_id": "AdaMix",
"token_count": 12344
} | 54 |
# coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team, The Google AI Language Team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.or... | AdaMix/src/transformers/models/distilbert/modeling_distilbert.py/0 | {
"file_path": "AdaMix/src/transformers/models/distilbert/modeling_distilbert.py",
"repo_id": "AdaMix",
"token_count": 16846
} | 55 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.a... | AdaMix/src/transformers/models/encoder_decoder/configuration_encoder_decoder.py/0 | {
"file_path": "AdaMix/src/transformers/models/encoder_decoder/configuration_encoder_decoder.py",
"repo_id": "AdaMix",
"token_count": 1807
} | 56 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/models/funnel/tokenization_funnel_fast.py/0 | {
"file_path": "AdaMix/src/transformers/models/funnel/tokenization_funnel_fast.py",
"repo_id": "AdaMix",
"token_count": 2921
} | 57 |
# Copyright 2021 The Fairseq Authors and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#... | AdaMix/src/transformers/models/m2m_100/tokenization_m2m_100.py/0 | {
"file_path": "AdaMix/src/transformers/models/m2m_100/tokenization_m2m_100.py",
"repo_id": "AdaMix",
"token_count": 6314
} | 58 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/models/prophetnet/convert_prophetnet_original_pytorch_checkpoint_to_pytorch.py/0 | {
"file_path": "AdaMix/src/transformers/models/prophetnet/convert_prophetnet_original_pytorch_checkpoint_to_pytorch.py",
"repo_id": "AdaMix",
"token_count": 3111
} | 59 |
# coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team, The Google AI Language Team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.or... | AdaMix/src/transformers/models/retribert/modeling_retribert.py/0 | {
"file_path": "AdaMix/src/transformers/models/retribert/modeling_retribert.py",
"repo_id": "AdaMix",
"token_count": 3881
} | 60 |
# flake8: noqa
# There's no way to ignore "F401 '...' imported but unused" warnings in this
# module, but to preserve other warnings. So, don't check this module at all.
# Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use thi... | AdaMix/src/transformers/models/speech_to_text/__init__.py/0 | {
"file_path": "AdaMix/src/transformers/models/speech_to_text/__init__.py",
"repo_id": "AdaMix",
"token_count": 1001
} | 61 |
# coding=utf-8
# Copyright 2018 T5 Authors and HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by... | AdaMix/src/transformers/models/t5/tokenization_t5_fast.py/0 | {
"file_path": "AdaMix/src/transformers/models/t5/tokenization_t5_fast.py",
"repo_id": "AdaMix",
"token_count": 3701
} | 62 |
# coding=utf-8
# Copyright 2018 Google AI, Google Brain and Carnegie Mellon University Authors and the HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the Lice... | AdaMix/src/transformers/models/transfo_xl/configuration_transfo_xl.py/0 | {
"file_path": "AdaMix/src/transformers/models/transfo_xl/configuration_transfo_xl.py",
"repo_id": "AdaMix",
"token_count": 3312
} | 63 |
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/models/wav2vec2/processing_wav2vec2.py/0 | {
"file_path": "AdaMix/src/transformers/models/wav2vec2/processing_wav2vec2.py",
"repo_id": "AdaMix",
"token_count": 2952
} | 64 |
from typing import TYPE_CHECKING, Optional, Union
from ..modelcard import ModelCard
from ..tokenization_utils import PreTrainedTokenizer
from .base import ArgumentHandler, Pipeline
if TYPE_CHECKING:
from ..modeling_tf_utils import TFPreTrainedModel
from ..modeling_utils import PreTrainedModel
# Can't use @... | AdaMix/src/transformers/pipelines/feature_extraction.py/0 | {
"file_path": "AdaMix/src/transformers/pipelines/feature_extraction.py",
"repo_id": "AdaMix",
"token_count": 1402
} | 65 |
# coding=utf-8
# Copyright 2020-present the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ap... | AdaMix/src/transformers/trainer.py/0 | {
"file_path": "AdaMix/src/transformers/trainer.py",
"repo_id": "AdaMix",
"token_count": 42179
} | 66 |
{
"modelname": "Template",
"uppercase_modelname": "TEMPLATE",
"lowercase_modelname": "template",
"camelcase_modelname": "Template",
"authors": "The HuggingFace Team",
"checkpoint_identifier": "brand-new-bert-base-cased",
"tokenizer_type": "Based on BERT",
"generate_tensorflow_and_pytorch": "PyTorch & Te... | AdaMix/templates/adding_a_new_model/tests/encoder-bert-tokenizer.json/0 | {
"file_path": "AdaMix/templates/adding_a_new_model/tests/encoder-bert-tokenizer.json",
"repo_id": "AdaMix",
"token_count": 142
} | 67 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a clone of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/tests/test_generation_utils.py/0 | {
"file_path": "AdaMix/tests/test_generation_utils.py",
"repo_id": "AdaMix",
"token_count": 32147
} | 68 |
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless r... | AdaMix/tests/test_modeling_convbert.py/0 | {
"file_path": "AdaMix/tests/test_modeling_convbert.py",
"repo_id": "AdaMix",
"token_count": 8441
} | 69 |
# coding=utf-8
# Copyright 2018 The Microsoft Research Asia LayoutLM Team Authors, The Hugging Face Team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/license... | AdaMix/tests/test_modeling_layoutlm.py/0 | {
"file_path": "AdaMix/tests/test_modeling_layoutlm.py",
"repo_id": "AdaMix",
"token_count": 6762
} | 70 |
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless r... | AdaMix/tests/test_modeling_speech_to_text.py/0 | {
"file_path": "AdaMix/tests/test_modeling_speech_to_text.py",
"repo_id": "AdaMix",
"token_count": 14251
} | 71 |
# coding=utf-8
# Copyright 2020 Huggingface
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed ... | AdaMix/tests/test_modeling_tf_dpr.py/0 | {
"file_path": "AdaMix/tests/test_modeling_tf_dpr.py",
"repo_id": "AdaMix",
"token_count": 4521
} | 72 |
import json
import os
import shutil
import tempfile
import unittest
from unittest.mock import patch
import numpy as np
from transformers import BartTokenizer
from transformers.file_utils import cached_property, is_datasets_available, is_faiss_available, is_tf_available
from transformers.models.bert.tokenization_bert ... | AdaMix/tests/test_modeling_tf_rag.py/0 | {
"file_path": "AdaMix/tests/test_modeling_tf_rag.py",
"repo_id": "AdaMix",
"token_count": 19383
} | 73 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/tests/test_optimization_tf.py/0 | {
"file_path": "AdaMix/tests/test_optimization_tf.py",
"repo_id": "AdaMix",
"token_count": 1782
} | 74 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/tests/test_retrieval_rag.py/0 | {
"file_path": "AdaMix/tests/test_retrieval_rag.py",
"repo_id": "AdaMix",
"token_count": 7696
} | 75 |
# coding=utf-8
# Copyright 2019 Hugging Face inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | AdaMix/tests/test_tokenization_deberta_v2.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_deberta_v2.py",
"repo_id": "AdaMix",
"token_count": 3660
} | 76 |
# coding=utf-8
# Copyright 2018 Salesforce and HuggingFace Inc. team.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | AdaMix/tests/test_tokenization_phobert.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_phobert.py",
"repo_id": "AdaMix",
"token_count": 1159
} | 77 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | AdaMix/tests/test_tokenization_xlnet.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_xlnet.py",
"repo_id": "AdaMix",
"token_count": 3308
} | 78 |
""" Script for downloading all GLUE data.
Original source: https://gist.github.com/W4ngatang/60c2bdb54d156a41194446737ce03e2e
Note: for legal reasons, we are unable to host MRPC.
You can either use the version hosted by the SentEval team, which is already tokenized,
or you can download the original data from (https://... | AdaMix/utils/download_glue_data.py/0 | {
"file_path": "AdaMix/utils/download_glue_data.py",
"repo_id": "AdaMix",
"token_count": 3870
} | 79 |
# !bin/bash
# **Usage**
# - for running default image, training binaries, in windowed mode:
# `$ ./run_docker_image.sh "" training`
# - for running default image, training binaries, in headless mode:
# `$ ./run_docker_image.sh "" training headless`
# - for running a custom image in windowed mode, pass... | AirSim-Drone-Racing-Lab/docker/run_docker_image.sh/0 | {
"file_path": "AirSim-Drone-Racing-Lab/docker/run_docker_image.sh",
"repo_id": "AirSim-Drone-Racing-Lab",
"token_count": 1017
} | 80 |
import tensorflow as tf
from tensorflow.keras import Model
from tensorflow.keras.layers import Dense, Flatten, Conv2D, BatchNormalization, Lambda, Concatenate, Conv2DTranspose, Reshape, ReLU
class NonLinearTransformer(Model):
def __init__(self):
super(NonLinearTransformer, self).__init__()
self.cre... | AirSim-Drone-Racing-VAE-Imitation/racing_models/transformer.py/0 | {
"file_path": "AirSim-Drone-Racing-VAE-Imitation/racing_models/transformer.py",
"repo_id": "AirSim-Drone-Racing-VAE-Imitation",
"token_count": 717
} | 81 |
#!/bin/sh
# This script builds wheels for the API, SDK, and extension packages in the
# dist/ dir, to be uploaded to PyPI.
set -ev
# Get the latest versions of packaging tools
python -m pip install --upgrade pip build setuptools wheel
BASEDIR=$(dirname $(readlink -f $(dirname $0)))
DISTDIR=dist
(
cd $BASEDIR
m... | ApplicationInsights-Python/scripts/build.sh/0 | {
"file_path": "ApplicationInsights-Python/scripts/build.sh",
"repo_id": "ApplicationInsights-Python",
"token_count": 256
} | 82 |
{
"MD004": false,
"MD007": {
"indent": 2
},
"MD013": {
"line_length": 400
},
"MD026": {
"punctuation": ".,;:!。，；:"
},
"MD029": false,
"MD033": false,
"MD036": false,
"blank_lines": false
}
| AzureTRE/.markdownlint.json/0 | {
"file_path": "AzureTRE/.markdownlint.json",
"repo_id": "AzureTRE",
"token_count": 115
} | 83 |
{
"scriptFile": "__init__.py",
"entryPoint": "main",
"bindings": [
{
"name": "msg",
"type": "serviceBusTrigger",
"direction": "in",
"topicName": "%BLOB_CREATED_TOPIC_NAME%",
"subscriptionName": "%TOPIC_SUBSCRIPTION_NAME%",
"connection": "SB_CONNECTION_STRING"
},
{
... | AzureTRE/airlock_processor/BlobCreatedTrigger/function.json/0 | {
"file_path": "AzureTRE/airlock_processor/BlobCreatedTrigger/function.json",
"repo_id": "AzureTRE",
"token_count": 378
} | 84 |
# RG
CORE_RESOURCE_GROUP_NAME = "rg-{}"
WORKSPACE_RESOURCE_GROUP_NAME = "rg-{}-ws-{}"
IMPORT_TYPE = "import"
EXPORT_TYPE = "export"
# Import
STORAGE_ACCOUNT_NAME_IMPORT_EXTERNAL = "stalimex"
STORAGE_ACCOUNT_NAME_IMPORT_INPROGRESS = "stalimip"
STORAGE_ACCOUNT_NAME_IMPORT_APPROVED = "stalimappws"
STORAGE_ACCOUNT_NAME_IM... | AzureTRE/airlock_processor/shared_code/constants.py/0 | {
"file_path": "AzureTRE/airlock_processor/shared_code/constants.py",
"repo_id": "AzureTRE",
"token_count": 609
} | 85 |
import asyncio
from fastapi import APIRouter, Depends, HTTPException, Header, status, Response
from jsonschema.exceptions import ValidationError
from db.repositories.operations import OperationRepository
from db.errors import DuplicateEntity, MajorVersionUpdateDenied, UserNotAuthorizedToUseTemplate, TargetTemplateVer... | AzureTRE/api_app/api/routes/shared_services.py/0 | {
"file_path": "AzureTRE/api_app/api/routes/shared_services.py",
"repo_id": "AzureTRE",
"token_count": 3867
} | 86 |
import copy
import uuid
from datetime import datetime
from typing import List, Optional
from pydantic import UUID4
from azure.cosmos.exceptions import CosmosResourceNotFoundError, CosmosAccessConditionFailedError
from fastapi import HTTPException, status
from pydantic import parse_obj_as
from models.domain.authenticat... | AzureTRE/api_app/db/repositories/airlock_requests.py/0 | {
"file_path": "AzureTRE/api_app/db/repositories/airlock_requests.py",
"repo_id": "AzureTRE",
"token_count": 4302
} | 87 |
from pydantic import Field
from models.domain.resource import Resource, ResourceType
class WorkspaceService(Resource):
"""
Workspace service request
"""
workspaceId: str = Field("", title="Workspace ID", description="Service target Workspace id")
resourceType = ResourceType.WorkspaceService
| AzureTRE/api_app/models/domain/workspace_service.py/0 | {
"file_path": "AzureTRE/api_app/models/domain/workspace_service.py",
"repo_id": "AzureTRE",
"token_count": 86
} | 88 |
from enum import Enum
from typing import List
from pydantic import BaseModel, Field
from models.domain.resource import ResourceType
from models.domain.workspace import Workspace, WorkspaceAuth
def get_sample_workspace(workspace_id: str, spec_workspace_id: str = "0001") -> dict:
return {
"id": workspace_... | AzureTRE/api_app/models/schemas/workspace.py/0 | {
"file_path": "AzureTRE/api_app/models/schemas/workspace.py",
"repo_id": "AzureTRE",
"token_count": 1233
} | 89 |
import json
from pathlib import Path
from typing import List, Dict, Tuple
def get_system_properties(id_field: str = "workspace_id"):
return {
"tre_id": {
"type": "string"
},
id_field: {
"type": "string"
},
"azure_location": {
"type": "str... | AzureTRE/api_app/services/schema_service.py/0 | {
"file_path": "AzureTRE/api_app/services/schema_service.py",
"repo_id": "AzureTRE",
"token_count": 1782
} | 90 |
import datetime
from unittest.mock import AsyncMock
import uuid
import pytest
import pytest_asyncio
from mock import patch
import json
from fastapi import HTTPException, status
from api.routes.resource_helpers import save_and_deploy_resource, send_uninstall_message, mask_sensitive_properties, enrich_resource_with_ava... | AzureTRE/api_app/tests_ma/test_api/test_routes/test_resource_helpers.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_api/test_routes/test_resource_helpers.py",
"repo_id": "AzureTRE",
"token_count": 6314
} | 91 |
from unittest.mock import AsyncMock
from mock import patch
import pytest
import pytest_asyncio
from db.repositories.resources_history import ResourceHistoryRepository
from models.domain.resource import Resource, ResourceHistoryItem, ResourceType
from tests_ma.test_api.test_routes.test_resource_helpers import FAKE_CREA... | AzureTRE/api_app/tests_ma/test_db/test_repositories/test_resource_history_repository.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_db/test_repositories/test_resource_history_repository.py",
"repo_id": "AzureTRE",
"token_count": 1650
} | 92 |
[flake8]
ignore = E501,W503
| AzureTRE/cli/.flake8/0 | {
"file_path": "AzureTRE/cli/.flake8",
"repo_id": "AzureTRE",
"token_count": 13
} | 93 |
import sys
import click
import logging
from tre.api_client import ApiClient
from tre.output import output, output_option, query_option
@click.command(name="migrations", help="Run migrations")
@output_option()
@query_option()
def migrations(output_format, query) -> None:
log = logging.getLogger(__name__)
cli... | AzureTRE/cli/tre/commands/migrations.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/migrations.py",
"repo_id": "AzureTRE",
"token_count": 229
} | 94 |
import logging
import click
from tre.api_client import ApiClient
from tre.output import output, output_option, query_option
from .contexts import UserResourceTemplateContext, pass_user_resource_template_context
def template_name_completion(ctx: click.Context, param: click.Parameter, incomplete: str):
log = loggi... | AzureTRE/cli/tre/commands/workspace_service_templates/user_resource_templates/user_resource_template.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/workspace_service_templates/user_resource_templates/user_resource_template.py",
"repo_id": "AzureTRE",
"token_count": 737
} | 95 |
import json
import sys
import click
import logging
from tre.api_client import ApiClient
from tre.commands.operation import default_operation_table_query_single, operation_show
from tre.output import output, output_option, query_option
from .contexts import pass_workspace_context, WorkspaceContext
from .operation impo... | AzureTRE/cli/tre/commands/workspaces/workspace.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/workspaces/workspace.py",
"repo_id": "AzureTRE",
"token_count": 3326
} | 96 |
---
# After you have replaced all the __CHANGE_ME__ values in this file, you need to
# run `make auth` to setup the Auth.
tre_id: __CHANGE_ME__
location: __CHANGE_ME__
management:
mgmt_resource_group_name: __CHANGE_ME__
mgmt_storage_account_name: __CHANGE_ME__
terraform_state_container_name: tfstate
acr_name: _... | AzureTRE/config.sample.yaml/0 | {
"file_path": "AzureTRE/config.sample.yaml",
"repo_id": "AzureTRE",
"token_count": 1055
} | 97 |
data "azurerm_client_config" "deployer" {}
data "azurerm_monitor_diagnostic_categories" "agw" {
resource_id = azurerm_application_gateway.agw.id
depends_on = [
azurerm_application_gateway.agw
]
}
| AzureTRE/core/terraform/appgateway/data.tf/0 | {
"file_path": "AzureTRE/core/terraform/appgateway/data.tf",
"repo_id": "AzureTRE",
"token_count": 84
} | 98 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# set -o xtrace
# This is where we can migrate any Terraform before we plan and apply
# For instance deprecated Terraform resources
# shellcheck disable=SC1091
source ./migrate.sh
PLAN_FILE="tfplan$$"
TS=$(date +"%s")
LOG_FILE="${TS}-tre-core.log"
# This var... | AzureTRE/core/terraform/deploy.sh/0 | {
"file_path": "AzureTRE/core/terraform/deploy.sh",
"repo_id": "AzureTRE",
"token_count": 300
} | 99 |
variable "tre_id" {
type = string
}
variable "location" {
type = string
}
variable "resource_group_name" {
type = string
}
variable "core_address_space" {
type = string
}
variable "arm_environment" {
type = string
}
| AzureTRE/core/terraform/network/variables.tf/0 | {
"file_path": "AzureTRE/core/terraform/network/variables.tf",
"repo_id": "AzureTRE",
"token_count": 77
} | 100 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# Uncomment this line to see each command for debugging (careful: this will show secrets!)
# set -o xtrace
# Get the directory that this script is in
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
echo -e "\n\e[34m╔════════════════════... | AzureTRE/devops/scripts/check_dependencies.sh/0 | {
"file_path": "AzureTRE/devops/scripts/check_dependencies.sh",
"repo_id": "AzureTRE",
"token_count": 1312
} | 101 |
#!/bin/bash
# This script adds missing env vars that are needed to run porter commands locally.
# If a bundle defines a parameter that isn't in the environment it will be added.
# When/if this issue will be address, we could remove the script:
# https://github.com/getporter/porter/issues/2474
set -o errexit
set -o pi... | AzureTRE/devops/scripts/porter_local_env.sh/0 | {
"file_path": "AzureTRE/devops/scripts/porter_local_env.sh",
"repo_id": "AzureTRE",
"token_count": 214
} | 102 |
{
"$schema": "https://json-schema.org/draft/2019-09/schema",
"type": "object",
"properties": {
"id": {
"type": "string",
"description": "Assignment id."
},
"userId": {
"type": "string",
"description": "User id.",
"format": "... | AzureTRE/docs/schemas/resource-assignment.json/0 | {
"file_path": "AzureTRE/docs/schemas/resource-assignment.json",
"repo_id": "AzureTRE",
"token_count": 768
} | 103 |
# AzureTRE Deployment repo
AzureTRE has an OSS deployment repository which you can find [here.](https://github.com/microsoft/AzureTRE-Deployment)
It contains all the required tooling to develop your custom templates and deploy the Azure TRE:
- Github Actions implementing AzureTRE automation, including running deploym... | AzureTRE/docs/tre-admins/setup-instructions/deployment-repo.md/0 | {
"file_path": "AzureTRE/docs/tre-admins/setup-instructions/deployment-repo.md",
"repo_id": "AzureTRE",
"token_count": 627
} | 104 |
# TRE CLI
**WARNING - this CLI is currently experimental**
This guide will cover various components of AzureTRE CLI such as installation, login, general command structure and other components that enable operating the CLI.
## Installation
It is recommended to use CLI within the dev container. It should be installed... | AzureTRE/docs/tre-developers/CLI.md/0 | {
"file_path": "AzureTRE/docs/tre-developers/CLI.md",
"repo_id": "AzureTRE",
"token_count": 2718
} | 105 |
# Guacamole User Resource Service bundle (Windows)
This is a User Resource Service template. It defines a VM to be used by TRE Airlock Managers with [Guacamole server](https://guacamole.apache.org/).
It blocks all inbound traffic to the internet and allows only RDP connections from within the vnet.
It also blocks all... | AzureTRE/docs/tre-templates/user-resources/export-reviewvm.md/0 | {
"file_path": "AzureTRE/docs/tre-templates/user-resources/export-reviewvm.md",
"repo_id": "AzureTRE",
"token_count": 216
} | 106 |
# Airlock Import Review workspace
Airlock Import Review workspace is used as part of Review workflow for [Airlock](../../azure-tre-overview/airlock.md).
It allows to review Airlock Data Import requests from, by providing a workspace to spin up VMs in that then can access the in-progress storage account.
The workspace... | AzureTRE/docs/tre-templates/workspaces/airlock-import-review.md/0 | {
"file_path": "AzureTRE/docs/tre-templates/workspaces/airlock-import-review.md",
"repo_id": "AzureTRE",
"token_count": 114
} | 107 |
# Local Development
This guide will cover how to setup local development environment to add custom templates to AzureTRE and deploy AzureTRE from the local machine.
## Local Development Setup
### Prerequisites
To deploy an Azure TRE instance, the following assets and tools are required:
* [Azure subscription](http... | AzureTRE/docs/using-tre/local-development/local-development.md/0 | {
"file_path": "AzureTRE/docs/using-tre/local-development/local-development.md",
"repo_id": "AzureTRE",
"token_count": 790
} | 108 |
[pytest]
markers =
smoke: marks tests as smoke (run sometimes, relatively fast)
extended: marks tests as extended (run less frequently, relatively slow)
extended_aad
shared_services
performance: marks tests for performance evaluation
timeout: used to set test timeout with pytest-timeout
airl... | AzureTRE/e2e_tests/pytest.ini/0 | {
"file_path": "AzureTRE/e2e_tests/pytest.ini",
"repo_id": "AzureTRE",
"token_count": 194
} | 109 |
import pytest
from e2e_tests.conftest import get_workspace_owner_token, disable_and_delete_ws_resource
from helpers import check_aad_auth_redirect
from resources.resource import get_resource, post_resource
from resources import strings
pytestmark = pytest.mark.asyncio
workspace_services = [
strings.AZUREML_SERVI... | AzureTRE/e2e_tests/test_workspace_services.py/0 | {
"file_path": "AzureTRE/e2e_tests/test_workspace_services.py",
"repo_id": "AzureTRE",
"token_count": 1254
} | 110 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# Uncomment this line to see each command for debugging (careful: this will show secrets!)
# set -o xtrace
export PORTER_HOME=${PORTER_HOME:-~/.porter}
export PORTER_MIRROR=${PORTER_MIRROR:-https://cdn.porter.sh}
PORTER_VERSION=${PORTER_VERSION:-latest}
echo "... | AzureTRE/resource_processor/scripts/porter-v1.sh/0 | {
"file_path": "AzureTRE/resource_processor/scripts/porter-v1.sh",
"repo_id": "AzureTRE",
"token_count": 374
} | 111 |
TRE_ID="__CHANGE_ME__"
TRE_URL="__CHANGE_ME__"
SMTP_SERVER_ADDRESS="__CHANGE_ME__"
SMTP_USERNAME="__CHANGE_ME__"
SMTP_PASSWORD="__CHANGE_ME__"
SMTP_FROM_EMAIL="__CHANGE_ME__"
TRE_RESOURCE_ID="__CHANGE_ME__"
SMTP_SERVER_PORT="25"
| AzureTRE/templates/shared_services/airlock_notifier/.env.sample/0 | {
"file_path": "AzureTRE/templates/shared_services/airlock_notifier/.env.sample",
"repo_id": "AzureTRE",
"token_count": 117
} | 112 |
# Azure Provider source and version being used
terraform {
required_providers {
azurerm = {
source = "hashicorp/azurerm"
version = "=3.57.0"
}
local = {
source = "hashicorp/local"
version = "=2.4.0"
}
}
backend "azurerm" {}
}
provider "azurerm" {
features {}
}
| AzureTRE/templates/shared_services/airlock_notifier/terraform/providers.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/airlock_notifier/terraform/providers.tf",
"repo_id": "AzureTRE",
"token_count": 143
} | 113 |
resource "azurerm_storage_account" "cyclecloud" {
name = local.storage_name
location = data.azurerm_resource_group.rg.location
resource_group_name = data.azurerm_resource_group.rg.name
account_tier = "Standard"
account_replication_type = "GRS"
tags ... | AzureTRE/templates/shared_services/cyclecloud/terraform/storage.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/cyclecloud/terraform/storage.tf",
"repo_id": "AzureTRE",
"token_count": 652
} | 114 |
variable "tre_id" {
type = string
description = "Unique TRE ID"
}
variable "tre_resource_id" {
type = string
description = "Unique TRE Resource ID"
}
variable "arm_environment" {
type = string
}
| AzureTRE/templates/shared_services/databricks-auth/terraform/variables.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/databricks-auth/terraform/variables.tf",
"repo_id": "AzureTRE",
"token_count": 82
} | 115 |
variable "tre_id" {
type = string
description = "Unique TRE ID"
}
variable "microsoft_graph_fqdn" {
type = string
description = "Microsoft Graph FQDN"
}
variable "tre_resource_id" {
type = string
description = "Resource ID"
}
variable "api_driven_rule_collections_b64" {
type = s... | AzureTRE/templates/shared_services/firewall/terraform/variables.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/firewall/terraform/variables.tf",
"repo_id": "AzureTRE",
"token_count": 211
} | 116 |
resource "random_password" "password" {
length = 20
min_upper = 2
min_lower = 2
min_numeric = 2
min_special = 2
}
resource "azurerm_mysql_flexible_server" "gitea" {
name = "mysql-${var.tre_id}"
resource_group_name = local.core_resource_group_name
location ... | AzureTRE/templates/shared_services/gitea/terraform/mysql.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/gitea/terraform/mysql.tf",
"repo_id": "AzureTRE",
"token_count": 1154
} | 117 |
#!/bin/bash
export TF_LOG=""
terraform init -input=false -backend=true -reconfigure -upgrade \
-backend-config="resource_group_name=${TF_VAR_mgmt_resource_group_name:?}" \
-backend-config="storage_account_name=${TF_VAR_mgmt_storage_account_name:?}" \
-backend-config="container_name=${TF_VAR_terraform_state... | AzureTRE/templates/shared_services/sonatype-nexus-vm/terraform/destroy.sh/0 | {
"file_path": "AzureTRE/templates/shared_services/sonatype-nexus-vm/terraform/destroy.sh",
"repo_id": "AzureTRE",
"token_count": 178
} | 118 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
export TF_LOG=""
terraform init -input=false -backend=true -reconfigure -upgrade \
-backend-config="resource_group_name=${TF_VAR_mgmt_resource_group_name?}" \
-backend-config="storage_account_name=${TF_VAR_mgmt_storage_account_name?}" \
-backend-co... | AzureTRE/templates/workspace_services/azureml/terraform/deploy.sh/0 | {
"file_path": "AzureTRE/templates/workspace_services/azureml/terraform/deploy.sh",
"repo_id": "AzureTRE",
"token_count": 213
} | 119 |
# This file is maintained automatically by "terraform init".
# Manual edits may be lost in future updates.
provider "registry.terraform.io/azure/azapi" {
version = "1.1.0"
constraints = "1.1.0"
hashes = [
"h1:IR+AHCwfjl1c0baWwfOwZ6QZtHj41H2syTgHkJtAr/M=",
"zh:2a25df6325a49f9e821f0b02c7da86167fc19a3ba... | AzureTRE/templates/workspace_services/azureml/user_resources/aml_compute/terraform/.terraform.lock.hcl/0 | {
"file_path": "AzureTRE/templates/workspace_services/azureml/user_resources/aml_compute/terraform/.terraform.lock.hcl",
"repo_id": "AzureTRE",
"token_count": 1342
} | 120 |
{
"australiacentral": {
"webappDestinationAddresses": ["13.75.218.172/32"],
"sccRelayDestinationAddresses": ["13.75.164.249/32"],
"sccRelayDomains": ["tunnel.australiaeast.azuredatabricks.net"],
"controlPlaneNatDestinationAddresses": ["13.70.105.50/32"],
"extendedInfrastructureDestinationAddresses... | AzureTRE/templates/workspace_services/databricks/terraform/databricks-udr.json/0 | {
"file_path": "AzureTRE/templates/workspace_services/databricks/terraform/databricks-udr.json",
"repo_id": "AzureTRE",
"token_count": 21485
} | 121 |
---
schemaVersion: 1.0.0
name: tre-workspace-service-gitea
version: 1.0.1
description: "A Gitea workspace service"
dockerfile: Dockerfile.tmpl
registry: azuretre
custom:
runtime_image:
name: gitea-workspace-service
build:
version_file: version.txt
docker_file: docker/Dockerfile
docker_conte... | AzureTRE/templates/workspace_services/gitea/porter.yaml/0 | {
"file_path": "AzureTRE/templates/workspace_services/gitea/porter.yaml",
"repo_id": "AzureTRE",
"token_count": 2097
} | 122 |
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.apache.gu... | AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/pom.xml/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/pom.xml",
"repo_id": "AzureTRE",
"token_count": 3800
} | 123 |
package org.apache.guacamole.auth.azuretre;
import com.auth0.jwk.UrlJwkProvider;
import org.apache.guacamole.GuacamoleException;
import org.apache.guacamole.auth.azuretre.connection.ConnectionService;
import org.apache.guacamole.auth.azuretre.user.AzureTREAuthenticatedUser;
import org.apache.guacamole.auth.azuretre.us... | AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/test/java/org/apache/guacamole/auth/azuretre/AzureTREAuthenticationProviderTest.java/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/test/java/org/apache/guacamole/auth/azuretre/AzureTREAuthenticationProviderTest.java",
"repo_id": "AzureTRE",
"token_count": 2052
} | 124 |
data "azurerm_service_plan" "workspace" {
name = "plan-${var.workspace_id}"
resource_group_name = data.azurerm_resource_group.ws.name
}
# we have to use user-assigned to break a cycle in the dependencies: app identity, kv-policy, secrets in app settings
resource "azurerm_user_assigned_identity" "gua... | AzureTRE/templates/workspace_services/guacamole/terraform/web_app.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/terraform/web_app.tf",
"repo_id": "AzureTRE",
"token_count": 2835
} | 125 |
---
apt:
preserve_sources_list: false
primary:
- arches:
- default
uri: "${nexus_proxy_url}/repository/ubuntu/"
security:
- arches:
- default
uri: "${nexus_proxy_url}/repository/ubuntu-security/"
sources_list: |
deb [trusted=yes] $PRIMARY $RELEASE main restricted univers... | AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-linuxvm/terraform/apt_sources_config.yml/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-linuxvm/terraform/apt_sources_config.yml",
"repo_id": "AzureTRE",
"token_count": 342
} | 126 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/templates/workspace_services/healthcare_services/template_schema.json",
"type": "object",
"title": "Azure Health Data Services Workspace Service",
"description": "Provides Azure Health Data Services within the... | AzureTRE/templates/workspace_services/health-services/template_schema.json/0 | {
"file_path": "AzureTRE/templates/workspace_services/health-services/template_schema.json",
"repo_id": "AzureTRE",
"token_count": 3781
} | 127 |
---
schemaVersion: 1.0.0
name: tre-service-innereye
version: 0.6.4
description: "An Azure TRE service for InnerEye Deep Learning"
registry: azuretre
dockerfile: Dockerfile.tmpl
credentials:
- name: azure_tenant_id
env: ARM_TENANT_ID
- name: azure_subscription_id
env: ARM_SUBSCRIPTION_ID
- name: azure_cli... | AzureTRE/templates/workspace_services/innereye/porter.yaml/0 | {
"file_path": "AzureTRE/templates/workspace_services/innereye/porter.yaml",
"repo_id": "AzureTRE",
"token_count": 1827
} | 128 |
# This is ssh server systemwide configuration file
#
# /etc/sshd_config
Port 2222
ListenAddress 0.0.0.0
LoginGraceTime 180
X11Forwarding yes
Ciphers aes128-cbc,3des-cbc,aes256-cbc
MACs hmac-sha1,hmac-sha1-96
StrictModes yes
... | AzureTRE/templates/workspace_services/mlflow/mlflow-server/docker/sshd_config/0 | {
"file_path": "AzureTRE/templates/workspace_services/mlflow/mlflow-server/docker/sshd_config",
"repo_id": "AzureTRE",
"token_count": 295
} | 129 |
resource "random_string" "username" {
length = 10
upper = true
lower = true
numeric = false
min_lower = 1
special = false
}
resource "random_password" "password" {
length = 16
lower = true
min_lower = 1
upper = true
min_upper = 1
nume... | AzureTRE/templates/workspace_services/mlflow/terraform/postgresql.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/mlflow/terraform/postgresql.tf",
"repo_id": "AzureTRE",
"token_count": 1363
} | 130 |
# Local .terraform directories
**/.terraform/*
# TF backend files
**/*_backend.tf
Dockerfile.tmpl
| AzureTRE/templates/workspace_services/ohdsi/.dockerignore/0 | {
"file_path": "AzureTRE/templates/workspace_services/ohdsi/.dockerignore",
"repo_id": "AzureTRE",
"token_count": 37
} | 131 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
if [[ -z ${DATA_SOURCE_CONFIG:-} ]] || [[ -z ${DATA_SOURCE_DIAMONS:-} ]]; then
printf 'No data source or daimons configured.'
exit 0
else
# Parse Data source
ds_config="$(echo "$DATA_SOURCE_CONFIG" | base64 --decode)"
ds_daimons="$(echo "$DATA_SOURCE_... | AzureTRE/templates/workspace_services/ohdsi/synapse_runner.sh/0 | {
"file_path": "AzureTRE/templates/workspace_services/ohdsi/synapse_runner.sh",
"repo_id": "AzureTRE",
"token_count": 809
} | 132 |
# Workspace Templates
Workspace Templates are located in this folder.
To customize or author new Workspace Templates read the [Authoring Workspace Templates](../../docs/tre-workspace-authors/authoring-workspace-templates.md).
| AzureTRE/templates/workspaces/README.md/0 | {
"file_path": "AzureTRE/templates/workspaces/README.md",
"repo_id": "AzureTRE",
"token_count": 61
} | 133 |
data "azuread_client_config" "current" {}
resource "random_uuid" "oauth2_user_impersonation_id" {}
resource "random_uuid" "app_role_workspace_owner_id" {}
resource "random_uuid" "app_role_workspace_researcher_id" {}
resource "random_uuid" "app_role_workspace_airlock_manager_id" {}
resource "azuread_application" "work... | AzureTRE/templates/workspaces/base/terraform/aad/aad.tf/0 | {
"file_path": "AzureTRE/templates/workspaces/base/terraform/aad/aad.tf",
"repo_id": "AzureTRE",
"token_count": 2884
} | 134 |
variable "tre_id" {
type = string
}
variable "location" {
type = string
}
variable "resource_group_name" {
type = string
}
variable "resource_group_id" {
type = string
}
variable "tre_workspace_tags" {
type = map(string)
}
variable "workspace_subnet_id" {
type = string
}
variable "azure_monitor_dns_zone_id"... | AzureTRE/templates/workspaces/base/terraform/azure-monitor/variables.tf/0 | {
"file_path": "AzureTRE/templates/workspaces/base/terraform/azure-monitor/variables.tf",
"repo_id": "AzureTRE",
"token_count": 267
} | 135 |
resource "azurerm_storage_account" "stg" {
name = local.storage_name
resource_group_name = azurerm_resource_group.ws.name
location = azurerm_resource_group.ws.location
account_tier = "Standard"
account_replication_type = "... | AzureTRE/templates/workspaces/base/terraform/storage.tf/0 | {
"file_path": "AzureTRE/templates/workspaces/base/terraform/storage.tf",
"repo_id": "AzureTRE",
"token_count": 1857
} | 136 |
{
"name": "tre-ui",
"version": "0.5.22",
"private": true,
"dependencies": {
"@azure/msal-browser": "^2.35.0",
"@azure/msal-react": "^1.5.12",
"@fluentui/react": "^8.114.1",
"@fluentui/react-file-type-icons": "^8.7.9",
"@reduxjs/toolkit": "^1.8.6",
"@rjsf/core": "^4.2.3",
"@rjsf/fluen... | AzureTRE/ui/app/package.json/0 | {
"file_path": "AzureTRE/ui/app/package.json",
"repo_id": "AzureTRE",
"token_count": 915
} | 137 |
import { Dialog, DialogFooter, PrimaryButton, DefaultButton, DialogType, Spinner } from '@fluentui/react';
import React, { useContext, useState } from 'react';
import { Resource } from '../../models/resource';
import { HttpMethod, ResultType, useAuthApiCall } from '../../hooks/useAuthApiCall';
import { WorkspaceContext... | AzureTRE/ui/app/src/components/shared/ConfirmDisableEnableResource.tsx/0 | {
"file_path": "AzureTRE/ui/app/src/components/shared/ConfirmDisableEnableResource.tsx",
"repo_id": "AzureTRE",
"token_count": 1293
} | 138 |
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