text stringlengths 5 22M | id stringlengths 12 177 | metadata dict | __index_level_0__ int64 0 1.37k |
|---|---|---|---|
{
"modelname": "TemplatePT",
"uppercase_modelname": "TEMPLATE_PT",
"lowercase_modelname": "template_pt",
"camelcase_modelname": "TemplatePt",
"authors": "The HuggingFace Team",
"checkpoint_identifier": "brand-new-bert-base-cased",
"tokenizer_type": "Based on BERT",
"generate_tensorflow_and_pytorch": "Py... | AdaMix/templates/adding_a_new_model/tests/pt-encoder-bert-tokenizer.json/0 | {
"file_path": "AdaMix/templates/adding_a_new_model/tests/pt-encoder-bert-tokenizer.json",
"repo_id": "AdaMix",
"token_count": 145
} | 67 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/tests/test_benchmark.py/0 | {
"file_path": "AdaMix/tests/test_benchmark.py",
"repo_id": "AdaMix",
"token_count": 4950
} | 68 |
# coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | AdaMix/tests/test_hf_api.py/0 | {
"file_path": "AdaMix/tests/test_hf_api.py",
"repo_id": "AdaMix",
"token_count": 3012
} | 69 |
# coding=utf-8
# Copyright 2018 Salesforce and HuggingFace Inc. team.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | AdaMix/tests/test_modeling_ctrl.py/0 | {
"file_path": "AdaMix/tests/test_modeling_ctrl.py",
"repo_id": "AdaMix",
"token_count": 3832
} | 70 |
# coding=utf-8
# Copyright 2020 The SqueezeBert authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | AdaMix/tests/test_modeling_squeezebert.py/0 | {
"file_path": "AdaMix/tests/test_modeling_squeezebert.py",
"repo_id": "AdaMix",
"token_count": 5715
} | 71 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | AdaMix/tests/test_modeling_tf_electra.py/0 | {
"file_path": "AdaMix/tests/test_modeling_tf_electra.py",
"repo_id": "AdaMix",
"token_count": 4804
} | 72 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | AdaMix/tests/test_modeling_tf_roberta.py/0 | {
"file_path": "AdaMix/tests/test_modeling_tf_roberta.py",
"repo_id": "AdaMix",
"token_count": 4791
} | 73 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/tests/test_pipelines_common.py/0 | {
"file_path": "AdaMix/tests/test_pipelines_common.py",
"repo_id": "AdaMix",
"token_count": 4465
} | 74 |
# coding=utf-8
# Copyright 2021 HuggingFace Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ag... | AdaMix/tests/test_sequence_feature_extraction_common.py/0 | {
"file_path": "AdaMix/tests/test_sequence_feature_extraction_common.py",
"repo_id": "AdaMix",
"token_count": 4815
} | 75 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | AdaMix/tests/test_tokenization_distilbert.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_distilbert.py",
"repo_id": "AdaMix",
"token_count": 572
} | 76 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team, The Microsoft Research team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# ... | AdaMix/tests/test_tokenization_prophetnet.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_prophetnet.py",
"repo_id": "AdaMix",
"token_count": 3447
} | 77 |
# coding=utf-8
# Copyright 2018 the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/tests/test_trainer.py/0 | {
"file_path": "AdaMix/tests/test_trainer.py",
"repo_id": "AdaMix",
"token_count": 21678
} | 78 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/utils/get_modified_files.py/0 | {
"file_path": "AdaMix/utils/get_modified_files.py",
"repo_id": "AdaMix",
"token_count": 435
} | 79 |
## AirSim Drone Racing Lab: Overview
<img src="https://github.com/madratman/airsim_neurips_gifs/blob/master/imgs/race.gif?raw=true" width="400">
ADRL is a framework for drone racing research, built on [Microsoft AirSim](https://github.com/Microsoft/Airsim).
We used our framework to host a simulation-based drone ra... | AirSim-Drone-Racing-Lab/docs/adrl_overview.md/0 | {
"file_path": "AirSim-Drone-Racing-Lab/docs/adrl_overview.md",
"repo_id": "AirSim-Drone-Racing-Lab",
"token_count": 530
} | 80 |
import time
from PoseSampler import *
num_samples = 100
dataset_path = '/home/rb/all_files/airsim_datasets/soccer_test'
# check if output folder exists
if not os.path.isdir(dataset_path):
os.makedirs(dataset_path)
img_dir = os.path.join(dataset_path, 'images')
os.makedirs(img_dir)
else:
print('Error: ... | AirSim-Drone-Racing-VAE-Imitation/datagen/img_generator/main.py/0 | {
"file_path": "AirSim-Drone-Racing-VAE-Imitation/datagen/img_generator/main.py",
"repo_id": "AirSim-Drone-Racing-VAE-Imitation",
"token_count": 245
} | 81 |
from .dataset_utils import *
from .stats_utils import *
from .geom_utils import *
from .trajectory_utils import * | AirSim-Drone-Racing-VAE-Imitation/racing_utils/__init__.py/0 | {
"file_path": "AirSim-Drone-Racing-VAE-Imitation/racing_utils/__init__.py",
"repo_id": "AirSim-Drone-Racing-VAE-Imitation",
"token_count": 36
} | 82 |
#!/bin/bash
wget -c https://github.com/microsoft/AirSim-NeurIPS2019-Drone-Racing/releases/download/v1.1-linux/AirSim.zip;
mkdir -p /home/$USER/Documents/AirSim;
unzip AirSim.zip;
mv AirSim AirSim_Final_Round;
wget --directory-prefix=AirSim_Final_Round/AirSimExe/Content/Paks -c https://github.com/microsoft/AirSim-NeurIP... | AirSim-NeurIPS2019-Drone-Racing/download_final_round_binaries.sh/0 | {
"file_path": "AirSim-NeurIPS2019-Drone-Racing/download_final_round_binaries.sh",
"repo_id": "AirSim-NeurIPS2019-Drone-Racing",
"token_count": 289
} | 83 |
include *.md
include azure/__init__.py
include azure/monitor/__init__.py
include LICENSE
recursive-include tests *.py
recursive-include samples *.py *.md
global-exclude *.pyc
global-exclude *.pyo
global-exclude __pycache__/*
| ApplicationInsights-Python/azure-monitor-events-extension/MANIFEST.in/0 | {
"file_path": "ApplicationInsights-Python/azure-monitor-events-extension/MANIFEST.in",
"repo_id": "ApplicationInsights-Python",
"token_count": 74
} | 84 |
---
repos:
- repo: https://github.com/pycqa/flake8
rev: '6.0.0'
hooks:
- id: flake8
- repo: https://github.com/hcodes/yaspeller
rev: v8.0.1
hooks:
- id: yaspeller
| AzureTRE/.pre-commit-config.yaml/0 | {
"file_path": "AzureTRE/.pre-commit-config.yaml",
"repo_id": "AzureTRE",
"token_count": 103
} | 85 |
import logging
import json
import azure.functions as func
from azure.storage.blob import BlobServiceClient
from shared_code import blob_operations
def delete_blob_and_container_if_last_blob(blob_url: str):
storage_account_name, container_name, blob_name = blob_operations.get_blob_info_from_blob_url(blob_url=blo... | AzureTRE/airlock_processor/DataDeletionTrigger/__init__.py/0 | {
"file_path": "AzureTRE/airlock_processor/DataDeletionTrigger/__init__.py",
"repo_id": "AzureTRE",
"token_count": 651
} | 86 |
from resources import strings
from fastapi import Request
from fastapi.responses import PlainTextResponse
from services.logging import logger
async def generic_error_handler(_: Request, exception: Exception) -> PlainTextResponse:
logger.debug("=====================================")
logger.exception(excepti... | AzureTRE/api_app/api/errors/generic_error.py/0 | {
"file_path": "AzureTRE/api_app/api/errors/generic_error.py",
"repo_id": "AzureTRE",
"token_count": 121
} | 87 |
from typing import Optional
from fastapi import APIRouter, Depends, HTTPException, status
from pydantic import parse_obj_as
from api.dependencies.workspace_service_templates import get_workspace_service_template_by_name_from_path
from api.routes.resource_helpers import get_template
from db.errors import EntityVersion... | AzureTRE/api_app/api/routes/user_resource_templates.py/0 | {
"file_path": "AzureTRE/api_app/api/routes/user_resource_templates.py",
"repo_id": "AzureTRE",
"token_count": 1036
} | 88 |
from typing import Optional
from azure.cosmos.aio import ContainerProxy
from azure.core import MatchConditions
from pydantic import BaseModel
from api.dependencies.database import Database
from db.errors import UnableToAccessDatabase
class BaseRepository:
@classmethod
async def create(cls, container_name: Op... | AzureTRE/api_app/db/repositories/base.py/0 | {
"file_path": "AzureTRE/api_app/db/repositories/base.py",
"repo_id": "AzureTRE",
"token_count": 841
} | 89 |
from pydantic import Field
from pydantic.types import UUID4
from pydantic.schema import Optional
from models.domain.azuretremodel import AzureTREModel
from typing import List
from models.domain.airlock_request import AirlockFile
class EventGridMessageData(AzureTREModel):
completed_step: str = Field(title="", desc... | AzureTRE/api_app/models/domain/airlock_operations.py/0 | {
"file_path": "AzureTRE/api_app/models/domain/airlock_operations.py",
"repo_id": "AzureTRE",
"token_count": 328
} | 90 |
from typing import List
from pydantic import BaseModel, Field
from models.domain.resource import ResourceType
from models.domain.workspace_service import WorkspaceService
def get_sample_workspace_service(workspace_id: str, workspace_service_id: str) -> dict:
return {
"id": workspace_service_id,
... | AzureTRE/api_app/models/schemas/workspace_service.py/0 | {
"file_path": "AzureTRE/api_app/models/schemas/workspace_service.py",
"repo_id": "AzureTRE",
"token_count": 945
} | 91 |
import asyncio
import json
from azure.servicebus.aio import ServiceBusClient, AutoLockRenewer
from azure.servicebus.exceptions import OperationTimeoutError, ServiceBusConnectionError
from fastapi import HTTPException
from pydantic import ValidationError, parse_obj_as
from api.dependencies.airlock import get_airlock_r... | AzureTRE/api_app/service_bus/airlock_request_status_update.py/0 | {
"file_path": "AzureTRE/api_app/service_bus/airlock_request_status_update.py",
"repo_id": "AzureTRE",
"token_count": 2901
} | 92 |
import json
import pytest
from mock import patch
from pydantic import parse_obj_as
from starlette import status
from db.errors import EntityDoesNotExist, EntityVersionExist, InvalidInput, UnableToAccessDatabase
from services.authentication import get_current_admin_user, get_current_tre_user_or_tre_admin
from models.d... | AzureTRE/api_app/tests_ma/test_api/test_routes/test_shared_service_templates.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_api/test_routes/test_shared_service_templates.py",
"repo_id": "AzureTRE",
"token_count": 2297
} | 93 |
import copy
from unittest.mock import AsyncMock
import uuid
import pytest
import pytest_asyncio
from mock import patch, MagicMock
from jsonschema.exceptions import ValidationError
from db.repositories.resources_history import ResourceHistoryRepository
from tests_ma.test_api.test_routes.test_resource_helpers import FAK... | AzureTRE/api_app/tests_ma/test_db/test_repositories/test_resource_repository.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_db/test_repositories/test_resource_repository.py",
"repo_id": "AzureTRE",
"token_count": 8908
} | 94 |
import pytest
from mock import call, patch
from models.domain.authentication import User, RoleAssignment
from models.domain.workspace import Workspace, WorkspaceRole
from services.aad_authentication import AzureADAuthorization
from services.access_service import AuthConfigValidationError
MOCK_MICROSOFT_GRAPH_URL = "h... | AzureTRE/api_app/tests_ma/test_services/test_aad_access_service.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_services/test_aad_access_service.py",
"repo_id": "AzureTRE",
"token_count": 10999
} | 95 |
from logging import Logger
import sys
from time import sleep
import click
from tre.api_client import ApiClient
from tre.output import output
def get_operation_id_completion(ctx: click.Context, log: Logger, list_url: str, param: click.Parameter, incomplete: str, scope_id: str = None):
client = ApiClient.get_api_c... | AzureTRE/cli/tre/commands/operation.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/operation.py",
"repo_id": "AzureTRE",
"token_count": 1387
} | 96 |
import json
import logging
import click
from tre.api_client import ApiClient
from tre.output import output, output_option, query_option
from tre.commands.workspace_service_templates.contexts import pass_workspace_service_template_context, WorkspaceServiceTemplateContext
@click.group(name="user-resource-templates", ... | AzureTRE/cli/tre/commands/workspace_service_templates/user_resource_templates/user_resource_templates.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/workspace_service_templates/user_resource_templates/user_resource_templates.py",
"repo_id": "AzureTRE",
"token_count": 894
} | 97 |
{
"$schema": "http://json-schema.org/draft-04/schema#",
"$id": "https://github.com/microsoft/AzureTRE/schema/config_schema.json",
"title": "AzureTRE configuration file",
"description": "This document contains all the configuration needed to deploy and setup AzureTRE.",
"type": "object",
"properties": {
... | AzureTRE/config_schema.json/0 | {
"file_path": "AzureTRE/config_schema.json",
"repo_id": "AzureTRE",
"token_count": 2949
} | 98 |
locals {
staticweb_storage_name = lower(replace("stweb${var.tre_id}", "-", ""))
staticweb_backend_pool_name = "beap-staticweb"
api_backend_pool_name = "beap-api"
app_path_map_name = "upm-application"
redirect_path_map_name = "upm-redirect"
insecure_frontend_port_name = "feport-insecur... | AzureTRE/core/terraform/appgateway/locals.tf/0 | {
"file_path": "AzureTRE/core/terraform/appgateway/locals.tf",
"repo_id": "AzureTRE",
"token_count": 449
} | 99 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# set -o xtrace
# These variables are loaded in for us
# shellcheck disable=SC2154
../../devops/scripts/terraform_wrapper.sh -g "${TF_VAR_mgmt_resource_group_name}" \
-s "${TF_VAR_mgmt_storage_account_name}" \
... | AzureTRE/core/terraform/destroy.sh/0 | {
"file_path": "AzureTRE/core/terraform/destroy.sh",
"repo_id": "AzureTRE",
"token_count": 274
} | 100 |
#!/bin/bash
set -e
if [ ! -f ../tre_output.json ]; then
# Connect to the remote backend of Terraform
export TF_LOG=""
# shellcheck disable=SC2154
terraform init -input=false -backend=true -reconfigure \
-backend-config="resource_group_name=$TF_VAR_mgmt_resource_group_name" \
-backend-config="storag... | AzureTRE/core/terraform/outputs.sh/0 | {
"file_path": "AzureTRE/core/terraform/outputs.sh",
"repo_id": "AzureTRE",
"token_count": 487
} | 101 |
#!/bin/bash
set -euo pipefail
# Use this for debug only
# set -o xtrace
# AZURE_CORE_OUTPUT=jsonc # force CLI output to JSON for the script (user can still change default for interactive usage in the dev container)
function show_usage()
{
cat << USAGE
Utility script for creating app registrations required by Azu... | AzureTRE/devops/scripts/aad/create_api_application.sh/0 | {
"file_path": "AzureTRE/devops/scripts/aad/create_api_application.sh",
"repo_id": "AzureTRE",
"token_count": 5372
} | 102 |
#!/bin/bash
# This script cleans/deletes Azure environments created in CI.
# A resource group will be evaluated if its name starts with aspecific prefix
# and tagged with the 'ci_git_ref' tag.
# If the RG was created as part of a PR, then it will be deleted if the PR
# isn't open anymore. In all other cases (like regu... | AzureTRE/devops/scripts/clean_ci_validation_envs.sh/0 | {
"file_path": "AzureTRE/devops/scripts/clean_ci_validation_envs.sh",
"repo_id": "AzureTRE",
"token_count": 1963
} | 103 |
#!/usr/bin/env bash
prs=$(gh pr list -s open -A app/dependabot -l javascript --json headRefName | jq ".[].headRefName"| tr -d '"')
for pr in $prs
do
command="git merge upstream/$pr --no-edit"
echo "$command"
$command
done
| AzureTRE/devops/scripts/process_prs.sh/0 | {
"file_path": "AzureTRE/devops/scripts/process_prs.sh",
"repo_id": "AzureTRE",
"token_count": 88
} | 104 |
variable "mgmt_storage_account_name" {
type = string
description = "Storage account created by bootstrap to hold all Terraform state"
}
variable "mgmt_resource_group_name" {
type = string
description = "Shared management resource group"
}
variable "location" {
type = string
descriptio... | AzureTRE/devops/terraform/variables.tf/0 | {
"file_path": "AzureTRE/devops/terraform/variables.tf",
"repo_id": "AzureTRE",
"token_count": 197
} | 105 |
{
"$schema": "https://json-schema.org/draft/2019-09/schema",
"type": "object",
"properties": {
"id": {
"type": "string",
"description": "Resource id.",
"format": "uuid"
},
"parentId": {
"type": "string",
"description": "Pare... | AzureTRE/docs/schemas/resource.json/0 | {
"file_path": "AzureTRE/docs/schemas/resource.json",
"repo_id": "AzureTRE",
"token_count": 1982
} | 106 |
# Getting Started
This section provide the guidelines for any engineer to deploy AzureTRE. This how-to will enable one to get familiar with a TRE deployment and its concepts.
!!! tip
For troubleshooting purpose make sure to check the [Troubleshooting FAQ](../../troubleshooting-faq/index.md).
| AzureTRE/docs/tre-admins/setup-instructions/index.md/0 | {
"file_path": "AzureTRE/docs/tre-admins/setup-instructions/index.md",
"repo_id": "AzureTRE",
"token_count": 76
} | 107 |
# Guacamole User Resource Service bundle (Linux)
This is a User Resource Service template. It defines a Linux-based VM to be used by TRE researchers and to be connected to using a [Guacamole server](https://guacamole.apache.org/).
It blocks all inbound and outbound traffic to the internet and allows only RDP connectio... | AzureTRE/docs/tre-templates/user-resources/guacamole-linux-vm.md/0 | {
"file_path": "AzureTRE/docs/tre-templates/user-resources/guacamole-linux-vm.md",
"repo_id": "AzureTRE",
"token_count": 136
} | 108 |
# Azure TRE base workspace
The base workspace template is the foundation that all other workspaces and workspace services are built upon. Alternative workspace architectures could be used. However, the templates provided in this repository rely on the specific architecture of this base workspace.
The base workspace t... | AzureTRE/docs/tre-templates/workspaces/base.md/0 | {
"file_path": "AzureTRE/docs/tre-templates/workspaces/base.md",
"repo_id": "AzureTRE",
"token_count": 404
} | 109 |
# Creating Custom templates
This document will show how to create custom templates and integrate them into your CI/CD pipelines.
## Templates types
There are 3 types of templates:
1. Workspace
1. Workspace Service
1. User Resource
Read more about them [here](../../index.md#workspace)
## How to add custom template... | AzureTRE/docs/using-tre/templates/index.md/0 | {
"file_path": "AzureTRE/docs/using-tre/templates/index.md",
"repo_id": "AzureTRE",
"token_count": 661
} | 110 |
import pytest
from httpx import AsyncClient
from starlette import status
import config
from e2e_tests.conftest import clean_up_test_workspace, create_or_get_test_workspace
from e2e_tests.resources.workspace import get_workspace
from helpers import assert_status, get_auth_header, get_template
from resources import str... | AzureTRE/e2e_tests/test_workspace_templates.py/0 | {
"file_path": "AzureTRE/e2e_tests/test_workspace_templates.py",
"repo_id": "AzureTRE",
"token_count": 833
} | 111 |
from typing import Optional
from multiprocessing import Process
import json
import asyncio
import logging
import sys
from resources.commands import azure_acr_login_command, azure_login_command, build_porter_command, build_porter_command_for_outputs, apply_porter_credentials_sets_command
from shared.config import get_co... | AzureTRE/resource_processor/vmss_porter/runner.py/0 | {
"file_path": "AzureTRE/resource_processor/vmss_porter/runner.py",
"repo_id": "AzureTRE",
"token_count": 4960
} | 112 |
# syntax=docker/dockerfile-upstream:1.4.0
FROM --platform=linux/amd64 debian:bullseye-slim
# PORTER_INIT
SHELL ["/bin/bash", "-o", "pipefail", "-c"]
RUN rm -f /etc/apt/apt.conf.d/docker-clean; echo 'Binary::apt::APT::Keep-Downloaded-Packages "true";' > /etc/apt/apt.conf.d/keep-cache
# Install jq
RUN --mount=type=ca... | AzureTRE/templates/shared_services/airlock_notifier/Dockerfile.tmpl/0 | {
"file_path": "AzureTRE/templates/shared_services/airlock_notifier/Dockerfile.tmpl",
"repo_id": "AzureTRE",
"token_count": 267
} | 113 |
resource "azurerm_firewall_policy_rule_collection_group" "core_airlock_notifier" {
name = "rcg-core-airlock-notifier"
firewall_policy_id = data.azurerm_firewall_policy.core.id
priority = 501
network_rule_collection {
name = "nrc-resource-processor-appservice-deployment"
prio... | AzureTRE/templates/shared_services/airlock_notifier/terraform/rules.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/airlock_notifier/terraform/rules.tf",
"repo_id": "AzureTRE",
"token_count": 291
} | 114 |
output "fqdn" {
value = azurerm_public_ip.appgwpip.fqdn
}
output "application_gateway_name" {
value = azurerm_application_gateway.agw.name
}
output "storage_account_name" {
value = azurerm_storage_account.staticweb.name
}
output "resource_group_name" {
value = azurerm_application_gateway.agw.resource_group_n... | AzureTRE/templates/shared_services/certs/terraform/outputs.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/certs/terraform/outputs.tf",
"repo_id": "AzureTRE",
"token_count": 158
} | 115 |
variable "tre_id" {
type = string
}
variable "tre_resource_id" {
type = string
}
variable "arm_environment" {
type = string
} | AzureTRE/templates/shared_services/cyclecloud/terraform/variables.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/cyclecloud/terraform/variables.tf",
"repo_id": "AzureTRE",
"token_count": 46
} | 116 |
#!/bin/bash
# This script exists to support the migration from the firewall into a shared service bundle, that can be deployed from a dev workstation.
set -e
PLAN_FILE="tfplan$$"
TS=$(date +"%s")
LOG_FILE="${TS}-tre-${SHARED_SERVICE_KEY}.log"
LOC="$(dirname -- "$(readlink -f "${BASH_SOURCE}")")"
${LOC}/../../devop... | AzureTRE/templates/shared_services/deploy_from_local.sh/0 | {
"file_path": "AzureTRE/templates/shared_services/deploy_from_local.sh",
"repo_id": "AzureTRE",
"token_count": 279
} | 117 |
output "gitea_fqdn" {
value = azurerm_linux_web_app.gitea.default_hostname
}
output "address_prefixes" {
value = jsonencode(data.azurerm_subnet.web_app.address_prefixes)
}
output "gitea_allowed_fqdns_list" {
value = jsonencode(local.gitea_allowed_fqdns_list)
}
output "connection_uri" {
value = "https://${azu... | AzureTRE/templates/shared_services/gitea/terraform/outputs.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/gitea/terraform/outputs.tf",
"repo_id": "AzureTRE",
"token_count": 175
} | 118 |
{
"name": "docker-hub",
"online": true,
"storage": {
"blobStoreName": "default",
"strictContentTypeValidation": true,
"write_policy": "ALLOW"
},
"proxy": {
"remoteUrl": "https://registry-1.docker.io",
"contentMaxAge": 1440,
"metadataMaxAge": 1440
},
"dockerProxy": {
... | AzureTRE/templates/shared_services/sonatype-nexus-vm/scripts/nexus_repos_config/docker_hub_proxy_conf.json/0 | {
"file_path": "AzureTRE/templates/shared_services/sonatype-nexus-vm/scripts/nexus_repos_config/docker_hub_proxy_conf.json",
"repo_id": "AzureTRE",
"token_count": 404
} | 119 |
locals {
core_vnet = "vnet-${var.tre_id}"
core_resource_group_name = "rg-${var.tre_id}"
nexus_allowed_fqdns = "pypi.org,*.pypi.org,files.pythonhosted.org,security.ubuntu.com,archive.ubuntu.com,keyserver.ubuntu.com,repo.anaconda.com,*.docker.com,*.docker.io,conda.anaconda.o... | AzureTRE/templates/shared_services/sonatype-nexus-vm/terraform/locals.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/sonatype-nexus-vm/terraform/locals.tf",
"repo_id": "AzureTRE",
"token_count": 448
} | 120 |
#!/bin/bash
set -euo pipefail
eval "$(jq -r '@sh "AUTH_CLIENT_ID=\(.auth_client_id) AUTH_CLIENT_SECRET=\(.auth_client_secret) AUTH_TENANT_ID=\(.auth_tenant_id) WORSKPACE_CLIENT_ID=\(.workspace_client_id)"')"
az cloud set --name "$AZURE_ENVIRONMENT"
az login --allow-no-subscriptions --service-principal --username "$... | AzureTRE/templates/workspace_services/azureml/terraform/get_app_role_members.sh/0 | {
"file_path": "AzureTRE/templates/workspace_services/azureml/terraform/get_app_role_members.sh",
"repo_id": "AzureTRE",
"token_count": 459
} | 121 |
# Using AzApi due to https://github.com/hashicorp/terraform-provider-azurerm/issues/15362
resource "azapi_resource" "compute_instance" {
type = "Microsoft.MachineLearningServices/workspaces/computes@2022-06-01-preview"
name = local.aml_compute_instance_name
location ... | AzureTRE/templates/workspace_services/azureml/user_resources/aml_compute/terraform/compute.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/azureml/user_resources/aml_compute/terraform/compute.tf",
"repo_id": "AzureTRE",
"token_count": 546
} | 122 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/templates/workspace_services/guacamole/template_schema.json",
"type": "object",
"title": "Gitea",
"description": "Gitea is a lightweight DevOps platform. Features include code hosting, code review, CI/CD, proj... | AzureTRE/templates/workspace_services/gitea/template_schema.json/0 | {
"file_path": "AzureTRE/templates/workspace_services/gitea/template_schema.json",
"repo_id": "AzureTRE",
"token_count": 4645
} | 123 |
FROM maven:3-jdk-11-slim AS client_build
COPY ./guacamole-auth-azure/pom.xml /pom.xml
# cache dependencies in a separate layer
RUN mvn package -Dmaven.test.skip
COPY ./guacamole-auth-azure/src /src
COPY ./docker/maven_package_and_exit_succesfully.sh /tmp/
RUN bash /tmp/maven_package_and_exit_succesfully.sh
FROM scra... | AzureTRE/templates/workspace_services/guacamole/guacamole-server/docker/Dockerfile/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/guacamole-server/docker/Dockerfile",
"repo_id": "AzureTRE",
"token_count": 1253
} | 124 |
# Guacamole Authorization Extension
This extension is built (maven) and is placed inside the extension directory.
Guacamole tries to authorize using all the given extensions.
Read more [here](https://guacamole.apache.org/doc/gug/guacamole-ext.html).
## TRE Authorization extension
This extension works in the followin... | AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/readme.md/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/readme.md",
"repo_id": "AzureTRE",
"token_count": 423
} | 125 |
package org.apache.guacamole.auth.azuretre.connection;
import org.apache.guacamole.GuacamoleException;
import org.apache.guacamole.auth.azuretre.user.AzureTREAuthenticatedUser;
import org.apache.guacamole.net.auth.AuthenticatedUser;
import org.apache.guacamole.net.auth.Connection;
import org.junit.jupiter.api.Test;
im... | AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/test/java/org/apache/guacamole/auth/azuretre/connection/ConnectionServiceTest.java/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/test/java/org/apache/guacamole/auth/azuretre/connection/ConnectionServiceTest.java",
"repo_id": "AzureTRE",
"token_count": 647
} | 126 |
# Guacamole User Resources
This folder contains user resources that can be deployed with the Guacamole workspace service:
- linuxvm - a Linux-based virtual machine (expects an Ubuntu 18.04-based VM)
- windowsvm - A Windows-based virtual machine
## Customising the user resources
The `guacamole-azure-linuxvm` and `g... | AzureTRE/templates/workspace_services/guacamole/user_resources/README.md/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/README.md",
"repo_id": "AzureTRE",
"token_count": 1822
} | 127 |
output "ip" {
value = azurerm_network_interface.internal.private_ip_address
}
output "hostname" {
value = azurerm_windows_virtual_machine.windowsvm.name
}
output "azure_resource_id" {
value = azurerm_windows_virtual_machine.windowsvm.id
}
output "connection_uri" {
value = "https://${data.azurerm_linux_web_ap... | AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-export-reviewvm/terraform/outputs.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-export-reviewvm/terraform/outputs.tf",
"repo_id": "AzureTRE",
"token_count": 245
} | 128 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-windowsvm/template_schema.json",
"type": "object",
"title": "Windows Virtual Machine",
"description": "Windows virtual machine.",... | AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-windowsvm/template_schema.json/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-windowsvm/template_schema.json",
"repo_id": "AzureTRE",
"token_count": 624
} | 129 |
data "azurerm_resource_group" "ws" {
name = "rg-${var.tre_id}-ws-${local.short_workspace_id}"
}
data "azurerm_virtual_network" "ws" {
name = "vnet-${var.tre_id}-ws-${local.short_workspace_id}"
resource_group_name = "rg-${var.tre_id}-ws-${local.short_workspace_id}"
}
data "azurerm_key_vault" "ws" ... | AzureTRE/templates/workspace_services/health-services/terraform/data.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/health-services/terraform/data.tf",
"repo_id": "AzureTRE",
"token_count": 539
} | 130 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/templates/workspace_services/innereye/template_schema.json",
"type": "object",
"title": "InnerEye service template",
"description": "Installs Azure ML and InnerEye components. Please be aware this te... | AzureTRE/templates/workspace_services/innereye/template_schema.json/0 | {
"file_path": "AzureTRE/templates/workspace_services/innereye/template_schema.json",
"repo_id": "AzureTRE",
"token_count": 385
} | 131 |
mlflow server \
--backend-store-uri "$MLFLOW_SERVER_FILE_STORE" \
--default-artifact-root "$MLFLOW_SERVER_DEFAULT_ARTIFACT_ROOT" \
--host "$MLFLOW_SERVER_HOST" \
--port "$MLFLOW_SERVER_PORT" \
--workers "$MLFLOW_SERVER_WORKERS"
| AzureTRE/templates/workspace_services/mlflow/mlflow-server/docker/startup.sh/0 | {
"file_path": "AzureTRE/templates/workspace_services/mlflow/mlflow-server/docker/startup.sh",
"repo_id": "AzureTRE",
"token_count": 113
} | 132 |
variable "workspace_id" {
type = string
}
variable "tre_id" {
type = string
}
variable "tre_resource_id" {
type = string
}
variable "mgmt_acr_name" {
type = string
}
variable "mgmt_resource_group_name" {
type = string
}
variable "is_exposed_externally" {
type = bool
description = "Is the webapp a... | AzureTRE/templates/workspace_services/mlflow/terraform/variables.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/mlflow/terraform/variables.tf",
"repo_id": "AzureTRE",
"token_count": 154
} | 133 |
ID="__CHANGE_ME__"
WORKSPACE_ID="__CHANGE_ME__"
TRE_ID="__CHANGE_ME__"
MGMT_RESOURCE_GROUP_NAME="__CHANGE_ME__"
MGMT_ACR_NAME="__CHANGE_ME__"
| AzureTRE/templates/workspace_services/ohdsi/.env.sample/0 | {
"file_path": "AzureTRE/templates/workspace_services/ohdsi/.env.sample",
"repo_id": "AzureTRE",
"token_count": 71
} | 134 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/templates/workspace_services/ohdsi/template_schema.json",
"type": "object",
"title": "OHDSI Workspace Service",
"description": "Provides OHDSI within the workspace",
"required": [],
"properties": {
"di... | AzureTRE/templates/workspace_services/ohdsi/template_schema.json/0 | {
"file_path": "AzureTRE/templates/workspace_services/ohdsi/template_schema.json",
"repo_id": "AzureTRE",
"token_count": 6895
} | 135 |
output "app_role_workspace_owner_id" {
value = random_uuid.app_role_workspace_owner_id.result
}
output "app_role_workspace_researcher_id" {
value = random_uuid.app_role_workspace_researcher_id.result
}
output "app_role_workspace_airlock_manager_id" {
value = random_uuid.app_role_workspace_airlock_manager_id.res... | AzureTRE/templates/workspaces/base/terraform/aad/outputs.tf/0 | {
"file_path": "AzureTRE/templates/workspaces/base/terraform/aad/outputs.tf",
"repo_id": "AzureTRE",
"token_count": 217
} | 136 |
#!/bin/bash
set -e
# This script is not used and is left here for you to debug the creation of the workspace
# at a Terraform level without having to interact with Porter
# This script assumes you have created an .env from the sample and the variables
# will come from there.
# shellcheck disable=SC2154
terraform init... | AzureTRE/templates/workspaces/base/terraform/deploy.sh/0 | {
"file_path": "AzureTRE/templates/workspaces/base/terraform/deploy.sh",
"repo_id": "AzureTRE",
"token_count": 239
} | 137 |
variable "tre_id" {
type = string
description = "Unique TRE ID"
}
variable "tre_resource_id" {
type = string
description = "Resource ID"
}
variable "shared_storage_quota" {
type = number
default = 50
description = "Quota (in GB) to set for the VM Shared Storage."
}
variable "lo... | AzureTRE/templates/workspaces/base/terraform/variables.tf/0 | {
"file_path": "AzureTRE/templates/workspaces/base/terraform/variables.tf",
"repo_id": "AzureTRE",
"token_count": 1273
} | 138 |
import { Dialog, DialogFooter, PrimaryButton, DialogType, Spinner, Dropdown, MessageBar, MessageBarType, Icon } from '@fluentui/react';
import React, { useContext, useState } from 'react';
import { AvailableUpgrade, Resource } from '../../models/resource';
import { HttpMethod, ResultType, useAuthApiCall } from '../../h... | AzureTRE/ui/app/src/components/shared/ConfirmUpgradeResource.tsx/0 | {
"file_path": "AzureTRE/ui/app/src/components/shared/ConfirmUpgradeResource.tsx",
"repo_id": "AzureTRE",
"token_count": 1658
} | 139 |
import { IStackStyles, Spinner, SpinnerSize, Stack } from "@fluentui/react";
import React, { useEffect, useContext, useState } from 'react';
import { useParams } from 'react-router-dom';
import { HttpMethod, useAuthApiCall } from '../../hooks/useAuthApiCall';
import { Operation } from '../../models/operation';
import {... | AzureTRE/ui/app/src/components/shared/ResourceOperationsList.tsx/0 | {
"file_path": "AzureTRE/ui/app/src/components/shared/ResourceOperationsList.tsx",
"repo_id": "AzureTRE",
"token_count": 1646
} | 140 |
import React, { useEffect, useState } from 'react';
import { Icon, ProgressIndicator, Link as FluentLink, Stack, DefaultPalette, Shimmer, ShimmerElementType } from '@fluentui/react';
import { TRENotification } from '../../../models/treNotification';
import { awaitingStates, completedStates, failedStates, inProgressStat... | AzureTRE/ui/app/src/components/shared/notifications/NotificationItem.tsx/0 | {
"file_path": "AzureTRE/ui/app/src/components/shared/notifications/NotificationItem.tsx",
"repo_id": "AzureTRE",
"token_count": 3328
} | 141 |
import { createContext } from "react";
import { CostResource } from "../models/costs";
import { LoadingState } from "../models/loadingState";
export const CostsContext = createContext({
costs: [] as Array<CostResource>,
loadingState: {} as LoadingState,
setCosts: (costs: Array<CostResource>) => { },
setLoading... | AzureTRE/ui/app/src/contexts/CostsContext.ts/0 | {
"file_path": "AzureTRE/ui/app/src/contexts/CostsContext.ts",
"repo_id": "AzureTRE",
"token_count": 105
} | 142 |
export enum RoleName {
TREAdmin = "TREAdmin",
TREUser = "TREUser"
}
export enum WorkspaceRoleName {
WorkspaceOwner = "WorkspaceOwner",
WorkspaceResearcher = "WorkspaceResearcher",
AirlockManager = "AirlockManager"
}
| AzureTRE/ui/app/src/models/roleNames.ts/0 | {
"file_path": "AzureTRE/ui/app/src/models/roleNames.ts",
"repo_id": "AzureTRE",
"token_count": 85
} | 143 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
import os
import sys
import json
data_dir=sys.argv[1]
def sort_triples(triples, text):
sorted_triples = sorted(triples, key=lambda x:text.find(x['drug']))
return sorted_triples
def build_target_seq_relis(triples):
answer ... | BioGPT/examples/RE-DDI/rebuild_data.py/0 | {
"file_path": "BioGPT/examples/RE-DDI/rebuild_data.py",
"repo_id": "BioGPT",
"token_count": 1111
} | 144 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
import logging
import numpy as np
import torch
from fairseq.data import FairseqDataset, data_utils
logger = logging.getLogger(__name__)
def collate(samples, pad_idx, eos_idx, prefix=False, sep_idx=None, prompt=None):
if len(samples) == 0... | BioGPT/src/language_model_prompt_dataset.py/0 | {
"file_path": "BioGPT/src/language_model_prompt_dataset.py",
"repo_id": "BioGPT",
"token_count": 3441
} | 145 |
// Copyright (c) Microsoft Corporation.
// Licensed under the MIT License.
#ifndef __LADDER_KERNEL_H__
#define __LADDER_KERNEL_H__
#include <cuda_fp16.h>
#if defined(__CUDA_ARCH__) && (__CUDA_ARCH__ == 800)
#define TVM_ENABLE_L2_PREFETCH 1
#else
#define TVM_ENABLE_L2_PREFETCH 0
#endif
#ifdef _WIN32
using uint = uns... | BitBLAS/integration/bitdistiller/kenrel_output/ladder_kernel.h/0 | {
"file_path": "BitBLAS/integration/bitdistiller/kenrel_output/ladder_kernel.h",
"repo_id": "BitBLAS",
"token_count": 6264
} | 146 |
Please checkout https://github.com/LeiWang1999/vllm-bitblas for details currently. The relative pull request to the official vLLM is still under construction.
| BitBLAS/integration/vLLM/README.md/0 | {
"file_path": "BitBLAS/integration/vLLM/README.md",
"repo_id": "BitBLAS",
"token_count": 41
} | 147 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
import tvm
from tvm.target import Target
from .arch_base import TileDevice
# For LLVM Backend, we do not provide the detailed information of the CPU
# As the LLVM backend do not required tuning, just maintain the consistency
class CPU(TileDevic... | BitBLAS/python/bitblas/base/roller/arch/cpu.py/0 | {
"file_path": "BitBLAS/python/bitblas/base/roller/arch/cpu.py",
"repo_id": "BitBLAS",
"token_count": 202
} | 148 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
from .operator import (
global_operator_cache, # noqa: F401
load_global_ops_cache, # noqa: F401
get_database_path, # noqa: F401
set_database_path, # noqa: F401
)
| BitBLAS/python/bitblas/cache/__init__.py/0 | {
"file_path": "BitBLAS/python/bitblas/cache/__init__.py",
"repo_id": "BitBLAS",
"token_count": 96
} | 149 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
# pylint: disable=missing-docstring, invalid-name
"""A GEMM schedule rule for GPU operators."""
from typing import Literal, Optional
from tvm import DataType, tir
from tvm.target import Target
from ..base.roller.rasterization import NoRasteriza... | BitBLAS/python/bitblas/gpu/matmul_wmma.py/0 | {
"file_path": "BitBLAS/python/bitblas/gpu/matmul_wmma.py",
"repo_id": "BitBLAS",
"token_count": 17200
} | 150 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
from tvm.target import Target
from typing import Literal, Union
from .operator import Operator
from .impl.lop3_permutate_impl import select_implementation
from dataclasses import dataclass
import torch
@dataclass(frozen=True)
class LOP3Permutate... | BitBLAS/python/bitblas/ops/lop3_permutate.py/0 | {
"file_path": "BitBLAS/python/bitblas/ops/lop3_permutate.py",
"repo_id": "BitBLAS",
"token_count": 814
} | 151 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
import tvm
from typing import Union
from enum import IntEnum
import numpy as np
import torch
from torch.utils.dlpack import from_dlpack, to_dlpack
from math import prod
from tvm.relay import TensorType
from tvm._ffi.base import _LIB, c_str
from t... | BitBLAS/python/bitblas/utils/tensor_adapter.py/0 | {
"file_path": "BitBLAS/python/bitblas/utils/tensor_adapter.py",
"repo_id": "BitBLAS",
"token_count": 2316
} | 152 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
import pytest
import bitblas
from bitblas import MatmulConfig, Matmul
import logging
from bitblas import set_log_level
set_log_level(logging.DEBUG)
@pytest.mark.parametrize(
"M,N,K,A_dtype,W_dtype,accum_dtype,out_dtype,layout,with_bias,grou... | BitBLAS/testing/python/operators/test_general_matmul_fp8.py/0 | {
"file_path": "BitBLAS/testing/python/operators/test_general_matmul_fp8.py",
"repo_id": "BitBLAS",
"token_count": 1367
} | 153 |
date ; hostname ; pwd
export MASTER_ADDR=$HOSTNAME
export MASTER_PORT=19800
export NODE_RANK=0
EXP_LR_ARRAY=(1e-5 2e-5 1e-5 2e-5)
EXP_BS_ARRAY=(16 16 32 32)
EXP_TN_ARRAY1=(cola mrpc sst2 qqp)
EXP_TN_ARRAY2=(stsb rte qnli mnli)
EXP_CUDA_INDEX1=(0 1 2 3)
EXP_CUDA_INDEX2=(4 5 6 7)
EXP_MASTER_PORT1=(19800 19801 19802 198... | BridgeTower/scripts/ftfpt_glue.sh/0 | {
"file_path": "BridgeTower/scripts/ftfpt_glue.sh",
"repo_id": "BridgeTower",
"token_count": 1102
} | 154 |
from ..datasets import NLVR2Dataset
from .datamodule_base import BaseDataModule
class NLVR2DataModule(BaseDataModule):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
@property
def dataset_cls(self):
return NLVR2Dataset
@property
def dataset_name(self):
... | BridgeTower/src/datamodules/nlvr2_datamodule.py/0 | {
"file_path": "BridgeTower/src/datamodules/nlvr2_datamodule.py",
"repo_id": "BridgeTower",
"token_count": 142
} | 155 |
import torch
from torchmetrics import Metric
class Accuracy(Metric):
def __init__(self, dist_sync_on_step=False):
super().__init__(dist_sync_on_step=dist_sync_on_step)
self.add_state("correct", default=torch.tensor(0.0), dist_reduce_fx="sum")
self.add_state("total", default=torch.tensor(0.... | BridgeTower/src/gadgets/my_metrics.py/0 | {
"file_path": "BridgeTower/src/gadgets/my_metrics.py",
"repo_id": "BridgeTower",
"token_count": 1078
} | 156 |
from .utils import (
inception_normalize,
imagenet_normalize,
MinMaxResize,
)
from PIL import Image
from torchvision import transforms
from torchvision.transforms import Compose, Resize, CenterCrop, ToTensor, Normalize, RandomResizedCrop, RandomHorizontalFlip
from .randaug import RandAugment
from .randaugme... | BridgeTower/src/transforms/transform.py/0 | {
"file_path": "BridgeTower/src/transforms/transform.py",
"repo_id": "BridgeTower",
"token_count": 2767
} | 157 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
import argparse
import gc
import json
import os
import time
import warnings
import numpy as np
import torch
import torch.nn.functional as F
import torchvision as tv
from PIL import Image, ImageFile
from detection_models import networks
from det... | Bringing-Old-Photos-Back-to-Life/Global/detection.py/0 | {
"file_path": "Bringing-Old-Photos-Back-to-Life/Global/detection.py",
"repo_id": "Bringing-Old-Photos-Back-to-Life",
"token_count": 2295
} | 158 |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
from .base_options import BaseOptions
class TrainOptions(BaseOptions):
def initialize(self):
BaseOptions.initialize(self)
# for displays
self.parser.add_argument('--display_freq', type=int, default=100, help='frequenc... | Bringing-Old-Photos-Back-to-Life/Global/options/train_options.py/0 | {
"file_path": "Bringing-Old-Photos-Back-to-Life/Global/options/train_options.py",
"repo_id": "Bringing-Old-Photos-Back-to-Life",
"token_count": 1766
} | 159 |
from __future__ import annotations
from pathlib import Path
import warnings
warnings.filterwarnings("ignore")
import random
import torchaudio
import collections
import re
import numpy as np
from transformers import AutoTokenizer, logging
from .models.clap import CLAP
from .models.mapper import get_clapcap
import math
... | CLAP/msclap/CLAPWrapper.py/0 | {
"file_path": "CLAP/msclap/CLAPWrapper.py",
"repo_id": "CLAP",
"token_count": 9467
} | 160 |
.. role:: hidden
:class: hidden-section
.. _optimizers:
Optimizers
==========
Optimizers update the Model parameters based on the gradients.
.. automodule:: fairseq.optim
:members:
.. autoclass:: fairseq.optim.FairseqOptimizer
:members:
:undoc-members:
.. autoclass:: fairseq.optim.adadelta.Adadelt... | COCO-LM/fairseq/docs/optim.rst/0 | {
"file_path": "COCO-LM/fairseq/docs/optim.rst",
"repo_id": "COCO-LM",
"token_count": 346
} | 161 |
#!/usr/bin/python3
# Copyright (c) Facebook, Inc. and its affiliates.
#
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import fileinput
import hashlib
import sys
from multiprocessing import Pool
def get_hashes_and_lines(raw_... | COCO-LM/fairseq/examples/backtranslation/deduplicate_lines.py/0 | {
"file_path": "COCO-LM/fairseq/examples/backtranslation/deduplicate_lines.py",
"repo_id": "COCO-LM",
"token_count": 511
} | 162 |
#!/usr/bin/env python3
#
# Copyright (c) Facebook, Inc. and its affiliates.
#
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.
import sys
from sacremoses.normalize import MosesPunctNormalizer
def main(args):
normalizer = MosesPunctNormal... | COCO-LM/fairseq/examples/constrained_decoding/normalize.py/0 | {
"file_path": "COCO-LM/fairseq/examples/constrained_decoding/normalize.py",
"repo_id": "COCO-LM",
"token_count": 241
} | 163 |
# Copyright (c) Facebook, Inc. and its affiliates.
#
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.
from typing import Dict, List, Optional
import math
import numpy as np
import torch
import torch.nn.functional as F
from torch import Tensor... | COCO-LM/fairseq/examples/fast_noisy_channel/noisy_channel_sequence_generator.py/0 | {
"file_path": "COCO-LM/fairseq/examples/fast_noisy_channel/noisy_channel_sequence_generator.py",
"repo_id": "COCO-LM",
"token_count": 21564
} | 164 |
# Deep Transformers with Latent Depth (Li et al., 2020)
[https://arxiv.org/abs/2009.13102](https://arxiv.org/abs/2009.13102).
## Introduction
We present a probabilistic framework to automatically learn which layer(s) to use by learning the posterior distributions of layer selection. As an extension of this framework... | COCO-LM/fairseq/examples/latent_depth/README.md/0 | {
"file_path": "COCO-LM/fairseq/examples/latent_depth/README.md",
"repo_id": "COCO-LM",
"token_count": 1061
} | 165 |
# Copyright (c) Facebook, Inc. and its affiliates.
#
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.
import math
import torch.nn as nn
from fairseq.models.transformer import TransformerEncoder
from .linformer_sentence_encoder_layer import Li... | COCO-LM/fairseq/examples/linformer/linformer_src/modules/linformer_sentence_encoder.py/0 | {
"file_path": "COCO-LM/fairseq/examples/linformer/linformer_src/modules/linformer_sentence_encoder.py",
"repo_id": "COCO-LM",
"token_count": 768
} | 166 |
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