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# Lab 2 - 定制一个新的张量运算
## 实验目的
1. 理解DNN框架中的张量算子的原理
2. 基于不同方法实现新的张量运算,并比较性能差异
## 实验环境
* PyTorch==1.5.0
## 实验原理
1. 深度神经网络中的张量运算原理
2. PyTorch中基于Function和Module构造张量的方法
3. 通过C++扩展编写Python函数模块
## 实验内容
### 实验流程图

### 具体步骤
1. 在MNIST的模型样例中,选择线性层(Linear)张量运算进行定制化实现
2. 理解PyTorch构... | AI-System/Labs/BasicLabs/Lab2/README.md/0 | {
"file_path": "AI-System/Labs/BasicLabs/Lab2/README.md",
"repo_id": "AI-System",
"token_count": 1897
} | 11 |
## 环境设置
### 1 前置依赖
推荐操作系统:Ubuntu 16.04 or 18.04
### 1.1 配置你的电脑或服务器
Docker的官方文档中的*getting started*有关于不同操作系统的Docker细节配置方法
* [Linux](https://docs.docker.com/engine/installation/linux/)
* [Ubuntu](https://docs.docker.com/engine/install/ubuntu/)
* [Mac](https://docs.docker.com/docker-for-mac/)
* [Windows](https://doc... | AI-System/Labs/BasicLabs/Lab5/setup.md/0 | {
"file_path": "AI-System/Labs/BasicLabs/Lab5/setup.md",
"repo_id": "AI-System",
"token_count": 665
} | 12 |
#include <iostream>
#include <stdio.h>
using namespace std;
int main()
{
int M = 3;
int N = 3;
int K = 3;
int A[M][K];
int B[K][N];
int C[M][N];
for (int m = 0; m < M; m++) {
for (int n = 0; n < N; n++) {
C[m][n] = 0;
for (int k = 0; k < K; k++) {
C[m][... | AI-System/Textbook/第1章-人工智能系统概述/src/gemm_locality.cpp/0 | {
"file_path": "AI-System/Textbook/第1章-人工智能系统概述/src/gemm_locality.cpp",
"repo_id": "AI-System",
"token_count": 304
} | 13 |
<!--Copyright © Microsoft Corporation. All rights reserved.
适用于[License](https://github.com/microsoft/AI-System/blob/main/LICENSE)版权许可-->
- [3.2 神经网络计算中的控制流](#32-神经网络计算中的控制流)
- [3.2.1 背景](#321-背景)
- [3.2.2 静态图:向数据流图中添加控制流原语](#322-静态图向数据流图中添加控制流原语)
- [3.2.3 动态图:复用宿主语言控制流语句](#323-动态图复用宿主语言控制流语句)
- [3.2.4 动态图转换... | AI-System/Textbook/第3章-深度学习框架基础/3.2-神经网络计算中的控制流.md/0 | {
"file_path": "AI-System/Textbook/第3章-深度学习框架基础/3.2-神经网络计算中的控制流.md",
"repo_id": "AI-System",
"token_count": 11629
} | 14 |
<!--Copyright © Microsoft Corporation. All rights reserved.
适用于[License](https://github.com/microsoft/AI-System/blob/main/LICENSE)版权许可-->
# 4.1 深度学习的计算模式
在理解深度学习体系结构之前,分析深度学习计算中常见的计算模式或模型结构至关重要。目前,深度学习已经广泛应用在计算机视觉、自然语言处理、语音处理等应用领域中,尽管模型结构在不断的演进,我们仍可以粗略的将大部分深度学习模型归纳为几大类常见的结构,如全连接层(Fully-connected layer)、卷积层(Convolut... | AI-System/Textbook/第4章-矩阵运算与计算机体系结构/4.1-深度学习的计算模式.md/0 | {
"file_path": "AI-System/Textbook/第4章-矩阵运算与计算机体系结构/4.1-深度学习的计算模式.md",
"repo_id": "AI-System",
"token_count": 4883
} | 15 |
<!--Copyright © Microsoft Corporation. All rights reserved.
适用于[License](https://github.com/microsoft/AI-System/blob/main/LICENSE)版权许可-->
# 分布式训练算法与系统 (Algorithms and Systems for Distributed Parallel Training)
# 简介
深度机器学习以其强大的数学统计能力,在众多领域的不同任务中显著超越了传统方法,从而广泛应用于我们生活生产的各个方面。除了有赖于模型设计的不断发展之外,这一切进步要着重归功于背后起支撑作用的巨大计算力。... | AI-System/Textbook/第6章-分布式训练算法与系统/6-前言.md/0 | {
"file_path": "AI-System/Textbook/第6章-分布式训练算法与系统/6-前言.md",
"repo_id": "AI-System",
"token_count": 1625
} | 16 |
<!--Copyright © Microsoft Corporation. All rights reserved.
适用于[License](https://github.com/microsoft/AI-System/blob/main/LICENSE)版权许可-->
# 7.4 面向深度学习的集群管理系统
之前的章节已经介绍经典的调度算法在运行深度学习作业的集群调度中的应用。但是这些算法本身没有考虑深度学习作业自身的特点,也没有利用 GPU 服务器中 GPU 的拓扑结构等硬件体系结构。
本章将围绕前沿的针对深度学习负载和 GPU 服务器特点而设计的平台调度算法进行介绍,期望让读者了解新负载和硬件的特点和调度管理需求... | AI-System/Textbook/第7章-异构计算集群调度与资源管理系统/7.4-面向深度学习的集群管理系统.md/0 | {
"file_path": "AI-System/Textbook/第7章-异构计算集群调度与资源管理系统/7.4-面向深度学习的集群管理系统.md",
"repo_id": "AI-System",
"token_count": 41828
} | 17 |
# Starter pipeline
# Start with a minimal pipeline that you can customize to build and deploy your code.
# Add steps that build, run tests, deploy, and more:
# https://aka.ms/yaml
trigger:
batch: true
stages:
- stage: dev
jobs:
- template: steps/deploy.yml
parameters:
deployment_name: MLAKSDeployAMLJ... | AI/.ci/realtimeserving-release.yml/0 | {
"file_path": "AI/.ci/realtimeserving-release.yml",
"repo_id": "AI",
"token_count": 994
} | 18 |
parameters:
Agent: Hosted Ubuntu 1604
jobDisplayName: 'defaultDisplayName'
jobTimeoutInMinutes: 180
TridentWorkloadTypeShort: #
DeployLocation: #
DefaultWorkingDirectory: #
Template: #
azureSubscription: #
azure_subscription: #
ProjectLocation: #
PythonPath: #
doCleanup: False
stages:
- templat... | AI/.ci/stages/deploy_notebooks_stages.yml/0 | {
"file_path": "AI/.ci/stages/deploy_notebooks_stages.yml",
"repo_id": "AI",
"token_count": 825
} | 19 |
parameters:
location: "x"
azureSubscription: 'x'
conda: MLAKSDeployAML
azure_subscription: 'x'
azureresourcegroup: "dcibrg"
workspacename: "dcibws"
azureregion: "westus"
python_path: "{{cookiecutter.project_name}}"
timeoutInMinutes: 90
steps:
- task: AzureCLI@1
displayName: ${{parameters.notebook}}... | AI/.ci/steps/aml/creation_step.yml/0 | {
"file_path": "AI/.ci/steps/aml/creation_step.yml",
"repo_id": "AI",
"token_count": 384
} | 20 |
parameters:
template: ''
azureSubscription: 'x'
azure_subscription: 'x'
azureresourcegroup: 'x'
workspacename: 'x'
azureregion: 'x'
aksimagename: 'x'
aks_name: "mlaks"
location: "" #Root Dir of Project
python_path: "" #Root Dir of Python Env
cluster_name: "-"
flighting_release: false
flighti... | AI/.ci/steps/deploy_notebook_steps.yml/0 | {
"file_path": "AI/.ci/steps/deploy_notebook_steps.yml",
"repo_id": "AI",
"token_count": 408
} | 21 |
variables:
DeploymentName: ADOTrinDeployJob
TridentWorkloadTypeShort: adomltrain
DeployLocation: eastus2
ProjectLocation: "."
PythonPath: "."
Template: ADOTrainDeployAMLJob.yml
Notebooks: '00_AMLConfiguration.ipynb 01_AutoML_Local.ipynb' # NOT USED YET
| AI/.ci/vars/ado_ml_batch_train_vars.yml/0 | {
"file_path": "AI/.ci/vars/ado_ml_batch_train_vars.yml",
"repo_id": "AI",
"token_count": 97
} | 22 |
{
"$schema": "https://schema.management.azure.com/schemas/2019-04-01/deploymentTemplate.json#",
"contentVersion": "1.0.0.0",
"parameters": {
"name": {
"type": "String"
},
"sqlAdministratorLogin": {
"type": "String"
},
"sqlAdministratorPassword"... | AI/AzureDeployment/DeploySpark/Synapse/azuredeploy.json/0 | {
"file_path": "AI/AzureDeployment/DeploySpark/Synapse/azuredeploy.json",
"repo_id": "AI",
"token_count": 1108
} | 23 |
import sys
sys.path += ['../']
import os
import torch
from data.msmarco_data import GetTrainingDataProcessingFn, GetTripletTrainingDataProcessingFn
from utils.util import (
getattr_recursive,
set_seed,
StreamingDataset,
EmbeddingCache,
get_checkpoint_no,
get_latest_ann_data,
is_first_worker
... | ANCE/drivers/run_ann.py/0 | {
"file_path": "ANCE/drivers/run_ann.py",
"repo_id": "ANCE",
"token_count": 11185
} | 24 |
"""
Code for self-training with weak supervision.
Author: Giannis Karamanolakis (gkaraman@cs.columbia.edu)
"""
import pandas as pd
import numpy as np
import os
from sklearn.model_selection import train_test_split
import glob
import joblib
from copy import deepcopy
import shutil
# PreprocessedDataset is used for loadi... | ASTRA/astra/dataset/preprocessed_dataset.py/0 | {
"file_path": "ASTRA/astra/dataset/preprocessed_dataset.py",
"repo_id": "ASTRA",
"token_count": 4723
} | 25 |
[
{
"tripleset": [
[
"Mars Hill College",
"JOINED",
"1973"
],
[
"Mars Hill College",
"LOCATION",
"Mars Hill, North Carolina"
]
],
"subtree_was_extended": true,
"annotations": [
{
"source": "WikiSQL_decl_sents",
... | AdaMix/NLG/data/dart/dart-v1.1.1-full-dev.json/0 | {
"file_path": "AdaMix/NLG/data/dart/dart-v1.1.1-full-dev.json",
"repo_id": "AdaMix",
"token_count": 1167015
} | 26 |
# ------------------------------------------------------------------------------------------
# Copyright (c). All rights reserved.
# Licensed under the MIT License (MIT). See LICENSE in the repo root for license information.
# -----------------------------------------------------------------------------------------... | AdaMix/NLG/loralib/utils.py/0 | {
"file_path": "AdaMix/NLG/loralib/utils.py",
"repo_id": "AdaMix",
"token_count": 810
} | 27 |
# ------------------------------------------------------------------------------------------
# Copyright (c). All rights reserved.
# Licensed under the MIT License (MIT). See LICENSE in the repo root for license information.
# -----------------------------------------------------------------------------------------... | AdaMix/NLG/src/data_utils.py/0 | {
"file_path": "AdaMix/NLG/src/data_utils.py",
"repo_id": "AdaMix",
"token_count": 4617
} | 28 |
#!/bin/bash
source ~/.bashrc
echo "running docker-entrypoint.sh"
conda activate container
echo $KUBE_GOOGLE_CLOUD_TPU_ENDPOINTS
echo "printed TPU info"
export XRT_TPU_CONFIG="tpu_worker;0;${KUBE_GOOGLE_CLOUD_TPU_ENDPOINTS:7}"
exec "$@"#!/bin/bash
| AdaMix/docker/transformers-pytorch-tpu/docker-entrypoint.sh/0 | {
"file_path": "AdaMix/docker/transformers-pytorch-tpu/docker-entrypoint.sh",
"repo_id": "AdaMix",
"token_count": 112
} | 29 |
..
Copyright 2020 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by ... | AdaMix/docs/source/main_classes/optimizer_schedules.rst/0 | {
"file_path": "AdaMix/docs/source/main_classes/optimizer_schedules.rst",
"repo_id": "AdaMix",
"token_count": 921
} | 30 |
..
Copyright 2020 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by ... | AdaMix/docs/source/model_doc/bort.rst/0 | {
"file_path": "AdaMix/docs/source/model_doc/bort.rst",
"repo_id": "AdaMix",
"token_count": 759
} | 31 |
..
Copyright 2020 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by ... | AdaMix/docs/source/model_doc/herbert.rst/0 | {
"file_path": "AdaMix/docs/source/model_doc/herbert.rst",
"repo_id": "AdaMix",
"token_count": 920
} | 32 |
..
Copyright 2020 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by ... | AdaMix/docs/source/model_doc/reformer.rst/0 | {
"file_path": "AdaMix/docs/source/model_doc/reformer.rst",
"repo_id": "AdaMix",
"token_count": 3100
} | 33 |
..
Copyright 2020 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by ... | AdaMix/docs/source/multilingual.rst/0 | {
"file_path": "AdaMix/docs/source/multilingual.rst",
"repo_id": "AdaMix",
"token_count": 1566
} | 34 |
<!---
Copyright 2020 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or ... | AdaMix/examples/benchmarking/README.md/0 | {
"file_path": "AdaMix/examples/benchmarking/README.md",
"repo_id": "AdaMix",
"token_count": 493
} | 35 |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless... | AdaMix/examples/legacy/seq2seq/convert_model_to_fp16.py/0 | {
"file_path": "AdaMix/examples/legacy/seq2seq/convert_model_to_fp16.py",
"repo_id": "AdaMix",
"token_count": 450
} | 36 |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless... | AdaMix/examples/legacy/seq2seq/run_distributed_eval.py/0 | {
"file_path": "AdaMix/examples/legacy/seq2seq/run_distributed_eval.py",
"repo_id": "AdaMix",
"token_count": 4145
} | 37 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | AdaMix/examples/legacy/token-classification/utils_ner.py/0 | {
"file_path": "AdaMix/examples/legacy/token-classification/utils_ner.py",
"repo_id": "AdaMix",
"token_count": 7663
} | 38 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | AdaMix/examples/research_projects/adversarial/run_hans.py/0 | {
"file_path": "AdaMix/examples/research_projects/adversarial/run_hans.py",
"repo_id": "AdaMix",
"token_count": 3256
} | 39 |
# coding=utf-8
# Copyright 2019 HuggingFace Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ag... | AdaMix/examples/research_projects/bertabs/test_utils_summarization.py/0 | {
"file_path": "AdaMix/examples/research_projects/bertabs/test_utils_summarization.py",
"repo_id": "AdaMix",
"token_count": 1749
} | 40 |
# coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Un... | AdaMix/examples/research_projects/distillation/distiller.py/0 | {
"file_path": "AdaMix/examples/research_projects/distillation/distiller.py",
"repo_id": "AdaMix",
"token_count": 12521
} | 41 |
# Long Form Question Answering
Author: @yjernite
This folder contains the code for the Long Form Question answering [demo](http://35.226.96.115:8080/) as well as methods to train and use a fully end-to-end Long Form Question Answering system using the [🤗transformers](https://github.com/huggingface/transformers) and ... | AdaMix/examples/research_projects/longform-qa/README.md/0 | {
"file_path": "AdaMix/examples/research_projects/longform-qa/README.md",
"repo_id": "AdaMix",
"token_count": 208
} | 42 |
## MM-IMDb
Based on the script [`run_mmimdb.py`](https://github.com/huggingface/transformers/blob/master/examples/contrib/mm-imdb/run_mmimdb.py).
[MM-IMDb](http://lisi1.unal.edu.co/mmimdb/) is a Multimodal dataset with around 26,000 movies including images, plots and other metadata.
### Training on MM-IMDb
```
pyth... | AdaMix/examples/research_projects/mm-imdb/README.md/0 | {
"file_path": "AdaMix/examples/research_projects/mm-imdb/README.md",
"repo_id": "AdaMix",
"token_count": 282
} | 43 |
# Performer fine-tuning
Example authors: @TevenLeScao, @Patrickvonplaten
Paper authors: Krzysztof Choromanski, Valerii Likhosherstov, David Dohan, Xingyou Song, Andreea Gane, Tamas Sarlos, Peter Hawkins, Jared Davis, Afroz Mohiuddin, Lukasz Kaiser, David Belanger, Lucy Colwell, Adrian Weller
## Requirements
`datase... | AdaMix/examples/research_projects/performer/README.md/0 | {
"file_path": "AdaMix/examples/research_projects/performer/README.md",
"repo_id": "AdaMix",
"token_count": 408
} | 44 |
import logging
import os
from pathlib import Path
import numpy as np
import pytorch_lightning as pl
import torch
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utilities import rank_zero_only
from utils_rag import save_json
def count_trainable_parameters(model):
mo... | AdaMix/examples/research_projects/rag/callbacks_rag.py/0 | {
"file_path": "AdaMix/examples/research_projects/rag/callbacks_rag.py",
"repo_id": "AdaMix",
"token_count": 1926
} | 45 |
#!/usr/bin/env python
import argparse
import os
import sys
from unittest.mock import patch
import pytorch_lightning as pl
import timeout_decorator
import torch
from distillation import SummarizationDistiller, distill_main
from finetune import SummarizationModule, main
from transformers import MarianMTModel
from tran... | AdaMix/examples/research_projects/seq2seq-distillation/_test_bash_script.py/0 | {
"file_path": "AdaMix/examples/research_projects/seq2seq-distillation/_test_bash_script.py",
"repo_id": "AdaMix",
"token_count": 3934
} | 46 |
import warnings
from pathlib import Path
from typing import List, Tuple, Union
import fire
from torch import nn
from transformers import AutoModelForSeq2SeqLM, AutoTokenizer, PreTrainedModel
from transformers.utils import logging
logger = logging.get_logger(__name__)
def copy_layers(src_layers: nn.ModuleList, des... | AdaMix/examples/research_projects/seq2seq-distillation/make_student.py/0 | {
"file_path": "AdaMix/examples/research_projects/seq2seq-distillation/make_student.py",
"repo_id": "AdaMix",
"token_count": 3129
} | 47 |
<!---
Copyright 2020 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or ... | AdaMix/examples/seq2seq/README.md/0 | {
"file_path": "AdaMix/examples/seq2seq/README.md",
"repo_id": "AdaMix",
"token_count": 3198
} | 48 |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE... | AdaMix/examples/text-classification/run_tf_glue.py/0 | {
"file_path": "AdaMix/examples/text-classification/run_tf_glue.py",
"repo_id": "AdaMix",
"token_count": 3538
} | 49 |
#!/usr/bin/env bash
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless r... | AdaMix/scripts/fsmt/convert-allenai-wmt16.sh/0 | {
"file_path": "AdaMix/scripts/fsmt/convert-allenai-wmt16.sh",
"repo_id": "AdaMix",
"token_count": 1372
} | 50 |
#!/bin/bash
for FILE in converted/*; do
model_name=`basename $FILE`
transformers-cli repo create $model_name -y
git clone https://huggingface.co/Helsinki-NLP/$model_name
mv $FILE/* $model_name/
cd $model_name
git add . && git commit -m "initial commit"
git push
cd ..
done
| AdaMix/scripts/tatoeba/upload_models.sh/0 | {
"file_path": "AdaMix/scripts/tatoeba/upload_models.sh",
"repo_id": "AdaMix",
"token_count": 109
} | 51 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/src/transformers/commands/env.py/0 | {
"file_path": "AdaMix/src/transformers/commands/env.py",
"repo_id": "AdaMix",
"token_count": 1002
} | 52 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/src/transformers/data/data_collator.py/0 | {
"file_path": "AdaMix/src/transformers/data/data_collator.py",
"repo_id": "AdaMix",
"token_count": 13938
} | 53 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | AdaMix/src/transformers/data/processors/utils.py/0 | {
"file_path": "AdaMix/src/transformers/data/processors/utils.py",
"repo_id": "AdaMix",
"token_count": 6018
} | 54 |
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/modelcard.py/0 | {
"file_path": "AdaMix/src/transformers/modelcard.py",
"repo_id": "AdaMix",
"token_count": 4062
} | 55 |
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/models/auto/modeling_tf_auto.py/0 | {
"file_path": "AdaMix/src/transformers/models/auto/modeling_tf_auto.py",
"repo_id": "AdaMix",
"token_count": 30331
} | 56 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | AdaMix/src/transformers/models/bert/modeling_tf_bert.py/0 | {
"file_path": "AdaMix/src/transformers/models/bert/modeling_tf_bert.py",
"repo_id": "AdaMix",
"token_count": 35477
} | 57 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | AdaMix/src/transformers/models/camembert/modeling_tf_camembert.py/0 | {
"file_path": "AdaMix/src/transformers/models/camembert/modeling_tf_camembert.py",
"repo_id": "AdaMix",
"token_count": 2011
} | 58 |
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team, The Hugging Face Team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless... | AdaMix/src/transformers/models/dpr/tokenization_dpr.py/0 | {
"file_path": "AdaMix/src/transformers/models/dpr/tokenization_dpr.py",
"repo_id": "AdaMix",
"token_count": 8358
} | 59 |
# coding=utf-8
# Copyright 2020-present Google Brain and Carnegie Mellon University Authors and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.a... | AdaMix/src/transformers/models/funnel/modeling_tf_funnel.py/0 | {
"file_path": "AdaMix/src/transformers/models/funnel/modeling_tf_funnel.py",
"repo_id": "AdaMix",
"token_count": 34672
} | 60 |
# coding=utf-8
# Copyright 2021 Iz Beltagy, Matthew E. Peters, Arman Cohan and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://w... | AdaMix/src/transformers/models/led/tokenization_led.py/0 | {
"file_path": "AdaMix/src/transformers/models/led/tokenization_led.py",
"repo_id": "AdaMix",
"token_count": 666
} | 61 |
# Copyright 2021 The Fairseq Authors and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#... | AdaMix/src/transformers/models/m2m_100/convert_m2m100_original_checkpoint_to_pytorch.py/0 | {
"file_path": "AdaMix/src/transformers/models/m2m_100/convert_m2m100_original_checkpoint_to_pytorch.py",
"repo_id": "AdaMix",
"token_count": 1203
} | 62 |
# coding=utf-8
# Copyright (c) Facebook, Inc. and its affiliates.
# Copyright (c) HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses... | AdaMix/src/transformers/models/mmbt/configuration_mmbt.py/0 | {
"file_path": "AdaMix/src/transformers/models/mmbt/configuration_mmbt.py",
"repo_id": "AdaMix",
"token_count": 548
} | 63 |
# coding=utf-8
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# ... | AdaMix/src/transformers/models/roberta/tokenization_roberta.py/0 | {
"file_path": "AdaMix/src/transformers/models/roberta/tokenization_roberta.py",
"repo_id": "AdaMix",
"token_count": 5074
} | 64 |
# coding=utf-8
# Copyright 2020 T5 Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# ... | AdaMix/src/transformers/models/t5/modeling_tf_t5.py/0 | {
"file_path": "AdaMix/src/transformers/models/t5/modeling_tf_t5.py",
"repo_id": "AdaMix",
"token_count": 32306
} | 65 |
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/models/wav2vec2/feature_extraction_wav2vec2.py/0 | {
"file_path": "AdaMix/src/transformers/models/wav2vec2/feature_extraction_wav2vec2.py",
"repo_id": "AdaMix",
"token_count": 3962
} | 66 |
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/pipelines/base.py/0 | {
"file_path": "AdaMix/src/transformers/pipelines/base.py",
"repo_id": "AdaMix",
"token_count": 9387
} | 67 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/tokenization_utils_base.py/0 | {
"file_path": "AdaMix/src/transformers/tokenization_utils_base.py",
"repo_id": "AdaMix",
"token_count": 67801
} | 68 |
{
"example_name": "text classification",
"directory_name": "{{cookiecutter.example_name|lower|replace(' ', '-')}}",
"example_shortcut": "{{cookiecutter.directory_name}}",
"model_class": "AutoModel",
"authors": "The HuggingFace Team",
"can_train_from_scratch": ["True", "False"]
} | AdaMix/templates/adding_a_new_example_script/cookiecutter.json/0 | {
"file_path": "AdaMix/templates/adding_a_new_example_script/cookiecutter.json",
"repo_id": "AdaMix",
"token_count": 101
} | 69 |
How to add BigBird to 🤗 Transformers?
=====================================
Mentor: [Patrick](https://github.com/patrickvonplaten)
Begin: 12.02.2020
Estimated End: 19.03.2020
Contributor: [Vasudev](https://github.com/vasudevgupta7)
Adding a new model is often difficult and requires an in-depth knowledge
of the 🤗... | AdaMix/templates/adding_a_new_model/open_model_proposals/ADD_BIG_BIRD.md/0 | {
"file_path": "AdaMix/templates/adding_a_new_model/open_model_proposals/ADD_BIG_BIRD.md",
"repo_id": "AdaMix",
"token_count": 14647
} | 70 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a clone of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/tests/test_generation_logits_process.py/0 | {
"file_path": "AdaMix/tests/test_generation_logits_process.py",
"repo_id": "AdaMix",
"token_count": 8400
} | 71 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | AdaMix/tests/test_modeling_gpt2.py/0 | {
"file_path": "AdaMix/tests/test_modeling_gpt2.py",
"repo_id": "AdaMix",
"token_count": 13494
} | 72 |
# coding=utf-8 # Copyright 2020 Huggingface
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed ... | AdaMix/tests/test_modeling_reformer.py/0 | {
"file_path": "AdaMix/tests/test_modeling_reformer.py",
"repo_id": "AdaMix",
"token_count": 26838
} | 73 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | AdaMix/tests/test_modeling_tf_ctrl.py/0 | {
"file_path": "AdaMix/tests/test_modeling_tf_ctrl.py",
"repo_id": "AdaMix",
"token_count": 4500
} | 74 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/tests/test_onnx.py/0 | {
"file_path": "AdaMix/tests/test_onnx.py",
"repo_id": "AdaMix",
"token_count": 3207
} | 75 |
# Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/tests/test_processor_speech_to_text.py/0 | {
"file_path": "AdaMix/tests/test_processor_speech_to_text.py",
"repo_id": "AdaMix",
"token_count": 2301
} | 76 |
# coding=utf-8
# Copyright 2018 Salesforce and HuggingFace Inc. team.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | AdaMix/tests/test_tokenization_ctrl.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_ctrl.py",
"repo_id": "AdaMix",
"token_count": 1074
} | 77 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... | AdaMix/tests/test_tokenization_openai.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_openai.py",
"repo_id": "AdaMix",
"token_count": 2309
} | 78 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team, The Microsoft Research team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# ... | AdaMix/tests/test_tokenization_xlm_prophetnet.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_xlm_prophetnet.py",
"repo_id": "AdaMix",
"token_count": 2150
} | 79 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/utils/class_mapping_update.py/0 | {
"file_path": "AdaMix/utils/class_mapping_update.py",
"repo_id": "AdaMix",
"token_count": 705
} | 80 |
ARG BASE_IMAGE=nvidia/cudagl:10.0-devel-ubuntu18.04
FROM $BASE_IMAGE
RUN apt-get update
RUN apt-get install \
git \
libglu1-mesa-dev \
pulseaudio \
python3 \
python3-pip \
sudo \
sudo \
wget \
x11-xserver-utils \
xdg-user-dirs \
unzip \
-y --no-install-recommends
RUN pip3 install setuptools wheel
RUN pi... | AirSim-Drone-Racing-Lab/docker/Dockerfile/0 | {
"file_path": "AirSim-Drone-Racing-Lab/docker/Dockerfile",
"repo_id": "AirSim-Drone-Racing-Lab",
"token_count": 365
} | 81 |
import numpy as np
from matplotlib import pyplot as plt
import cv2
import time
# open data
data_path = '/home/rb/data/il_datasets/bc_0'
vel_table = np.loadtxt(data_path + '/proc_vel.txt', delimiter=',').astype(np.float32)
with open(data_path + '/proc_images.txt') as f:
img_table = f.read().splitlines()
# sanity c... | AirSim-Drone-Racing-VAE-Imitation/datagen/action_generator/plot_data.py/0 | {
"file_path": "AirSim-Drone-Racing-VAE-Imitation/datagen/action_generator/plot_data.py",
"repo_id": "AirSim-Drone-Racing-VAE-Imitation",
"token_count": 701
} | 82 |
import tensorflow as tf
from tensorflow.keras import Model
from tensorflow.keras.layers import Dense, Flatten, Conv2D, BatchNormalization, Lambda, Concatenate, Conv2DTranspose, Reshape, ReLU
class ImgDecoder(Model):
def __init__(self):
super(ImgDecoder, self).__init__()
self.create_model()
def... | AirSim-Drone-Racing-VAE-Imitation/racing_models/decoders.py/0 | {
"file_path": "AirSim-Drone-Racing-VAE-Imitation/racing_models/decoders.py",
"repo_id": "AirSim-Drone-Racing-VAE-Imitation",
"token_count": 1125
} | 83 |
# !bin/bash
# **Usage**
# - for running default image, training binaries, in windowed mode:
# `$ ./run_docker_image.sh "" training`
# - for running default image, qualification binaries, in windowed mode:
# `$ ./run_docker_image.sh "" qualification`
# - for running default image, training binaries, i... | AirSim-NeurIPS2019-Drone-Racing/docker/run_docker_image.sh/0 | {
"file_path": "AirSim-NeurIPS2019-Drone-Racing/docker/run_docker_image.sh",
"repo_id": "AirSim-NeurIPS2019-Drone-Racing",
"token_count": 1223
} | 84 |
[flake8]
ignore = E501, W503
| AzureTRE/.flake8/0 | {
"file_path": "AzureTRE/.flake8",
"repo_id": "AzureTRE",
"token_count": 13
} | 85 |
#!/bin/bash
# 1. Remove any previously run failed flag
# 2. Run pytest, but capture the exit code so we always succeed
# 3. Output a file if the tests are not successful.
rm -f ../test-results/pytest_airlock_processor*
mkdir -p ../test-results
if ! pytest --junit-xml ../test-results/pytest_airlock_processor_unit.xml ... | AzureTRE/airlock_processor/run_tests_and_exit_succesfully.sh/0 | {
"file_path": "AzureTRE/airlock_processor/run_tests_and_exit_succesfully.sh",
"repo_id": "AzureTRE",
"token_count": 135
} | 86 |
from fastapi import Depends, HTTPException, Path, status
from api.helpers import get_repository
from db.errors import EntityDoesNotExist
from db.repositories.resource_templates import ResourceTemplateRepository
from models.domain.resource import ResourceType
from models.domain.resource_template import ResourceTemplate... | AzureTRE/api_app/api/dependencies/workspace_service_templates.py/0 | {
"file_path": "AzureTRE/api_app/api/dependencies/workspace_service_templates.py",
"repo_id": "AzureTRE",
"token_count": 242
} | 87 |
from datetime import datetime
import semantic_version
from copy import deepcopy
from typing import Dict, Any, Optional
from fastapi import HTTPException, status
from db.repositories.user_resources import UserResourceRepository
from models.domain.user_resource import UserResource
from models.domain.workspace_service im... | AzureTRE/api_app/api/routes/resource_helpers.py/0 | {
"file_path": "AzureTRE/api_app/api/routes/resource_helpers.py",
"repo_id": "AzureTRE",
"token_count": 5123
} | 88 |
import semantic_version
from db.repositories.workspaces import WorkspaceRepository
from services.logging import logger
class WorkspaceMigration(WorkspaceRepository):
@classmethod
async def create(cls):
cls = WorkspaceMigration()
resource_repo = await super().create()
cls._container = ... | AzureTRE/api_app/db/migrations/workspaces.py/0 | {
"file_path": "AzureTRE/api_app/db/migrations/workspaces.py",
"repo_id": "AzureTRE",
"token_count": 949
} | 89 |
import asyncio
import uvicorn
from fastapi import FastAPI
from fastapi.exceptions import RequestValidationError
from fastapi.middleware.cors import CORSMiddleware
from fastapi.concurrency import asynccontextmanager
from opentelemetry.instrumentation.fastapi import FastAPIInstrumentor
from starlette.exceptions import... | AzureTRE/api_app/main.py/0 | {
"file_path": "AzureTRE/api_app/main.py",
"repo_id": "AzureTRE",
"token_count": 890
} | 90 |
from pydantic import Field
from models.domain.resource import ResourceType
from models.domain.resource_template import ResourceTemplate
class UserResourceTemplate(ResourceTemplate):
parentWorkspaceService: str = Field("", title="Parent Workspace Service", description="The parent workspace service under which ser... | AzureTRE/api_app/models/domain/user_resource_template.py/0 | {
"file_path": "AzureTRE/api_app/models/domain/user_resource_template.py",
"repo_id": "AzureTRE",
"token_count": 89
} | 91 |
from typing import List
from pydantic import BaseModel, Field
from models.domain.resource import ResourceType
from models.domain.user_resource import UserResource
def get_sample_user_resource(user_resource_id: str) -> dict:
return {
"id": user_resource_id,
"ownerId": "abc9ru33-7265-4b5f-9eae-a1a... | AzureTRE/api_app/models/schemas/user_resource.py/0 | {
"file_path": "AzureTRE/api_app/models/schemas/user_resource.py",
"repo_id": "AzureTRE",
"token_count": 972
} | 92 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/schema/workspace.json",
"type": "object",
"title": "Workspace Default Parameters",
"description": "These parameters are required for all workspaces",
"required": [
"display_name",
"description"
],
... | AzureTRE/api_app/schemas/workspace.json/0 | {
"file_path": "AzureTRE/api_app/schemas/workspace.json",
"repo_id": "AzureTRE",
"token_count": 335
} | 93 |
from typing import Tuple
from azure.core import exceptions
from azure.servicebus.aio import ServiceBusClient
from azure.mgmt.compute.aio import ComputeManagementClient
from azure.cosmos.exceptions import CosmosHttpResponseError
from azure.cosmos.aio import ContainerProxy
from azure.servicebus.exceptions import ServiceB... | AzureTRE/api_app/services/health_checker.py/0 | {
"file_path": "AzureTRE/api_app/services/health_checker.py",
"repo_id": "AzureTRE",
"token_count": 1462
} | 94 |
import pytest
from httpx import AsyncClient
from mock import patch
from models.schemas.status import StatusEnum
from resources import strings
pytestmark = pytest.mark.asyncio
@patch("api.routes.health.create_resource_processor_status")
@patch("api.routes.health.create_service_bus_status")
@patch("api.routes.health.... | AzureTRE/api_app/tests_ma/test_api/test_routes/test_health.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_api/test_routes/test_health.py",
"repo_id": "AzureTRE",
"token_count": 1046
} | 95 |
import pytest
from mock import patch
from db.errors import UnableToAccessDatabase
from db.repositories.base import BaseRepository
pytestmark = pytest.mark.asyncio
@patch("api.dependencies.database.Database.get_container_proxy")
async def test_instantiating_a_repo_raises_unable_to_access_database_if_database_cant_be... | AzureTRE/api_app/tests_ma/test_db/test_repositories/test_base_repository.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_db/test_repositories/test_base_repository.py",
"repo_id": "AzureTRE",
"token_count": 167
} | 96 |
import json
import pytest
import uuid
from azure.servicebus import ServiceBusMessage
from mock import AsyncMock, patch
from models.schemas.resource import ResourcePatch
from service_bus.helpers import (
try_update_with_retries,
update_resource_for_step,
)
from tests_ma.test_api.conftest import create_test_use... | AzureTRE/api_app/tests_ma/test_service_bus/test_resource_request_sender.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_service_bus/test_resource_request_sender.py",
"repo_id": "AzureTRE",
"token_count": 2631
} | 97 |
# Collection of API HTTP request samples
This folder contains a set of .http files that can be used to test the API
- [API User Journey](./API%20User%20Journey.http): A typical scenario with registering templates, creating workspaces and other resources
- [API Template GET Endpoints](./API%20Template%20GET%20Endpoint... | AzureTRE/api_http_requests/README.md/0 | {
"file_path": "AzureTRE/api_http_requests/README.md",
"repo_id": "AzureTRE",
"token_count": 1041
} | 98 |
import click
import logging
from tre.api_client import ApiClient
from tre.output import output, output_option, query_option
@click.command(name="health", help="Show Health")
@output_option()
@query_option()
def health(output_format, query) -> None:
log = logging.getLogger(__name__)
client = ApiClient.get_ap... | AzureTRE/cli/tre/commands/health.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/health.py",
"repo_id": "AzureTRE",
"token_count": 200
} | 99 |
import logging
import click
from tre.commands.operation import get_operation_id_completion, operation_show
from tre.output import output_option, query_option
from .contexts import pass_workspace_operation_context, WorkspaceOperationContext
def operation_id_completion(ctx, param, incomplete):
log = logging.getLog... | AzureTRE/cli/tre/commands/workspaces/operation.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/workspaces/operation.py",
"repo_id": "AzureTRE",
"token_count": 638
} | 100 |
import click
from .commands.costs import costs
from .commands.health import health
from .commands.migrations import migrations
from tre.commands.get_token import get_token
from tre.commands.login import login
from tre.commands.api_call import call_api
from tre.commands.workspaces.workspace import workspace
from tre.co... | AzureTRE/cli/tre/main.py/0 | {
"file_path": "AzureTRE/cli/tre/main.py",
"repo_id": "AzureTRE",
"token_count": 517
} | 101 |
resource "azurerm_public_ip" "appgwpip" {
name = "pip-agw-${var.tre_id}"
resource_group_name = var.resource_group_name
location = var.location
allocation_method = "Static" # Static IPs are allocated immediately
sku = "Standard"
domain_name_label = var.tre_id
t... | AzureTRE/core/terraform/appgateway/appgateway.tf/0 | {
"file_path": "AzureTRE/core/terraform/appgateway/appgateway.tf",
"repo_id": "AzureTRE",
"token_count": 3317
} | 102 |
resource "azurerm_cosmosdb_account" "mongo" {
name = "cosmos-mongo-${var.tre_id}"
location = azurerm_resource_group.core.location
resource_group_name = azurerm_resource_group.core.name
offer_type = "Standard"
kind = "MongoDB"
en... | AzureTRE/core/terraform/cosmos_mongo.tf/0 | {
"file_path": "AzureTRE/core/terraform/cosmos_mongo.tf",
"repo_id": "AzureTRE",
"token_count": 1501
} | 103 |
# Network security group for Azure Bastion subnet
# See https://docs.microsoft.com/azure/bastion/bastion-nsg
resource "azurerm_network_security_group" "bastion" {
name = "nsg-bastion-subnet"
location = var.location
resource_group_name = var.resource_group_name
tags = loc... | AzureTRE/core/terraform/network/network_security_groups.tf/0 | {
"file_path": "AzureTRE/core/terraform/network/network_security_groups.tf",
"repo_id": "AzureTRE",
"token_count": 3935
} | 104 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# set -o xtrace
script_dir=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
core_rg_rid=$(terraform show -json | jq -r '.values.root_module.resources[] | select(.address=="azurerm_resource_group.core") | .values.id')
echo "Current tags:"
a... | AzureTRE/core/terraform/update_tags.sh/0 | {
"file_path": "AzureTRE/core/terraform/update_tags.sh",
"repo_id": "AzureTRE",
"token_count": 557
} | 105 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# Uncomment this line to see each command for debugging (careful: this will show secrets!)
# set -o xtrace
if [ "$(yq eval ".custom.runtime_image.build" porter.yaml)" == "null" ]; then
echo "Runtime image build section isn't specified. Exiting..."
exit 0
fi... | AzureTRE/devops/scripts/bundle_runtime_image_build.sh/0 | {
"file_path": "AzureTRE/devops/scripts/bundle_runtime_image_build.sh",
"repo_id": "AzureTRE",
"token_count": 640
} | 106 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# set -o xtrace
#
# Usage:
# load_env.sh <.env file>
#
if [ ! -f "$1" ]; then
if [ -z "${USE_ENV_VARS_NOT_FILES:-}" ]; then
echo -e "\e[31m»»» 💥 Unable to find $1 file, please create file and try again!\e[0m"
#exit
fi
else
# Loop over the rele... | AzureTRE/devops/scripts/load_env.sh/0 | {
"file_path": "AzureTRE/devops/scripts/load_env.sh",
"repo_id": "AzureTRE",
"token_count": 560
} | 107 |
provider "azurerm" {
features {}
}
# Resource group for TRE core management
resource "azurerm_resource_group" "mgmt" {
name = var.mgmt_resource_group_name
location = var.location
tags = {
project = "Azure Trusted Research Environment"
source = "https://github.com/microsoft/AzureTRE/"
}
lifec... | AzureTRE/devops/terraform/main.tf/0 | {
"file_path": "AzureTRE/devops/terraform/main.tf",
"repo_id": "AzureTRE",
"token_count": 803
} | 108 |
# Pre-deployment steps
## Setup Github Environment
The workflows are using Github environment to source its environment variables. Follow [this guide](https://docs.github.com/en/actions/deployment/targeting-different-environments/using-environments-for-deployment#creating-an-environment) to define it in your github r... | AzureTRE/docs/tre-admins/setup-instructions/cicd-pre-deployment-steps.md/0 | {
"file_path": "AzureTRE/docs/tre-admins/setup-instructions/cicd-pre-deployment-steps.md",
"repo_id": "AzureTRE",
"token_count": 2131
} | 109 |
<!-- markdownlint-disable-file MD046 -->
# Upgrading Resources Version
Azure TRE workspaces, workspace services, workspace shared services, and user resources are [Porter](https://porter.sh/) bundles. Porter bundles are based on [Cloud Native Application Bundles (CNAB)](https://cnab.io/).
When a new bundle version be... | AzureTRE/docs/tre-admins/upgrading-resources.md/0 | {
"file_path": "AzureTRE/docs/tre-admins/upgrading-resources.md",
"repo_id": "AzureTRE",
"token_count": 784
} | 110 |
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