text stringlengths 5 22M | id stringlengths 12 177 | metadata dict | __index_level_0__ int64 0 1.37k |
|---|---|---|---|
#!/usr/bin/env python
# coding=utf-8
# Copyright 2018 Google AI, Google Brain and Carnegie Mellon University Authors and the HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in co... | AdaMix/examples/text-generation/run_generation.py/0 | {
"file_path": "AdaMix/examples/text-generation/run_generation.py",
"repo_id": "AdaMix",
"token_count": 4137
} | 43 |
## 🔥 Model cards now live inside each huggingface.co model repo 🔥
For consistency, ease of use and scalability, `README.md` model cards now live directly inside each model repo on the HuggingFace model hub.
### How to update a model card
You can directly update a model card inside any model repo you have **write ... | AdaMix/model_cards/README.md/0 | {
"file_path": "AdaMix/model_cards/README.md",
"repo_id": "AdaMix",
"token_count": 309
} | 44 |
#!/usr/bin/env bash
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless r... | AdaMix/scripts/fsmt/eval-facebook-wmt19.sh/0 | {
"file_path": "AdaMix/scripts/fsmt/eval-facebook-wmt19.sh",
"repo_id": "AdaMix",
"token_count": 2623
} | 45 |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless... | AdaMix/src/transformers/commands/transformers_cli.py/0 | {
"file_path": "AdaMix/src/transformers/commands/transformers_cli.py",
"repo_id": "AdaMix",
"token_count": 553
} | 46 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | AdaMix/src/transformers/data/metrics/__init__.py/0 | {
"file_path": "AdaMix/src/transformers/data/metrics/__init__.py",
"repo_id": "AdaMix",
"token_count": 1426
} | 47 |
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/feature_extraction_sequence_utils.py/0 | {
"file_path": "AdaMix/src/transformers/feature_extraction_sequence_utils.py",
"repo_id": "AdaMix",
"token_count": 6638
} | 48 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | AdaMix/src/transformers/modeling_tf_utils.py/0 | {
"file_path": "AdaMix/src/transformers/modeling_tf_utils.py",
"repo_id": "AdaMix",
"token_count": 31708
} | 49 |
# coding=utf-8
# Copyright 2018 The OpenAI Team Authors and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License... | AdaMix/src/transformers/models/albert/modeling_tf_albert.py/0 | {
"file_path": "AdaMix/src/transformers/models/albert/modeling_tf_albert.py",
"repo_id": "AdaMix",
"token_count": 30002
} | 50 |
# coding=utf-8
# Copyright 2021 The Facebook Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LI... | AdaMix/src/transformers/models/blenderbot_small/tokenization_blenderbot_small.py/0 | {
"file_path": "AdaMix/src/transformers/models/blenderbot_small/tokenization_blenderbot_small.py",
"repo_id": "AdaMix",
"token_count": 4044
} | 51 |
# coding=utf-8
# Copyright 2018 Salesforce and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# h... | AdaMix/src/transformers/models/ctrl/modeling_ctrl.py/0 | {
"file_path": "AdaMix/src/transformers/models/ctrl/modeling_ctrl.py",
"repo_id": "AdaMix",
"token_count": 12620
} | 52 |
# coding=utf-8
# Copyright 2020, Microsoft and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless require... | AdaMix/src/transformers/models/deberta_v2/configuration_deberta_v2.py/0 | {
"file_path": "AdaMix/src/transformers/models/deberta_v2/configuration_deberta_v2.py",
"repo_id": "AdaMix",
"token_count": 3471
} | 53 |
# coding=utf-8
# Copyright 2020 The Facebook AI Research Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LIC... | AdaMix/src/transformers/models/fsmt/modeling_fsmt.py/0 | {
"file_path": "AdaMix/src/transformers/models/fsmt/modeling_fsmt.py",
"repo_id": "AdaMix",
"token_count": 23494
} | 54 |
# coding=utf-8
# Copyright 2018 The Microsoft Research Asia LayoutLM Team Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | AdaMix/src/transformers/models/layoutlm/tokenization_layoutlm.py/0 | {
"file_path": "AdaMix/src/transformers/models/layoutlm/tokenization_layoutlm.py",
"repo_id": "AdaMix",
"token_count": 730
} | 55 |
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/src/transformers/models/lxmert/convert_lxmert_original_tf_checkpoint_to_pytorch.py/0 | {
"file_path": "AdaMix/src/transformers/models/lxmert/convert_lxmert_original_tf_checkpoint_to_pytorch.py",
"repo_id": "AdaMix",
"token_count": 735
} | 56 |
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team, Microsoft Corporation.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License ... | AdaMix/src/transformers/models/mpnet/modeling_mpnet.py/0 | {
"file_path": "AdaMix/src/transformers/models/mpnet/modeling_mpnet.py",
"repo_id": "AdaMix",
"token_count": 17881
} | 57 |
# flake8: noqa
# There's no way to ignore "F401 '...' imported but unused" warnings in this
# module, but to preserve other warnings. So, don't check this module at all.
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use thi... | AdaMix/src/transformers/models/roberta/__init__.py/0 | {
"file_path": "AdaMix/src/transformers/models/roberta/__init__.py",
"repo_id": "AdaMix",
"token_count": 1565
} | 58 |
# coding=utf-8
# Copyright 2020 The SqueezeBert authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | AdaMix/src/transformers/models/squeezebert/tokenization_squeezebert.py/0 | {
"file_path": "AdaMix/src/transformers/models/squeezebert/tokenization_squeezebert.py",
"repo_id": "AdaMix",
"token_count": 876
} | 59 |
# coding=utf-8
# Copyright 2018 Google AI, Google Brain and Carnegie Mellon University Authors and the HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the Lice... | AdaMix/src/transformers/models/transfo_xl/modeling_tf_transfo_xl_utilities.py/0 | {
"file_path": "AdaMix/src/transformers/models/transfo_xl/modeling_tf_transfo_xl_utilities.py",
"repo_id": "AdaMix",
"token_count": 4236
} | 60 |
import collections
import numpy as np
from ..file_utils import add_end_docstrings, is_torch_available, requires_pandas
from .base import PIPELINE_INIT_ARGS, ArgumentHandler, Pipeline, PipelineException
if is_torch_available():
import torch
from ..models.auto.modeling_auto import MODEL_FOR_TABLE_QUESTION_AN... | AdaMix/src/transformers/pipelines/table_question_answering.py/0 | {
"file_path": "AdaMix/src/transformers/pipelines/table_question_answering.py",
"repo_id": "AdaMix",
"token_count": 6349
} | 61 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/src/transformers/trainer_seq2seq.py/0 | {
"file_path": "AdaMix/src/transformers/trainer_seq2seq.py",
"repo_id": "AdaMix",
"token_count": 3917
} | 62 |
# This file is autogenerated by the command `make fix-copies`, do not edit.
from ..file_utils import requires_sentencepiece
class AlbertTokenizer:
def __init__(self, *args, **kwargs):
requires_sentencepiece(self)
@classmethod
def from_pretrained(self, *args, **kwargs):
requires_sentencepi... | AdaMix/src/transformers/utils/dummy_sentencepiece_objects.py/0 | {
"file_path": "AdaMix/src/transformers/utils/dummy_sentencepiece_objects.py",
"repo_id": "AdaMix",
"token_count": 1518
} | 63 |
{
"modelname": "{{cookiecutter.modelname}}",
"uppercase_modelname": "{{cookiecutter.uppercase_modelname}}",
"lowercase_modelname": "{{cookiecutter.lowercase_modelname}}",
"camelcase_modelname": "{{cookiecutter.camelcase_modelname}}",
"authors": "{{cookiecutter.authors}}",
"checkpoint_identifier": "{{cookiec... | AdaMix/templates/adding_a_new_model/cookiecutter-template-{{cookiecutter.modelname}}/configuration.json/0 | {
"file_path": "AdaMix/templates/adding_a_new_model/cookiecutter-template-{{cookiecutter.modelname}}/configuration.json",
"repo_id": "AdaMix",
"token_count": 201
} | 64 |
{
"modelname": "TemplateBI",
"uppercase_modelname": "TEMPLATE_BI",
"lowercase_modelname": "template_bi",
"camelcase_modelname": "TemplateBi",
"authors": "The HuggingFace Team",
"checkpoint_identifier": "bi-brand-new-bert-base-cased",
"tokenizer_type": "Standalone",
"generate_tensorflow_and_pytorch": "Py... | AdaMix/templates/adding_a_new_model/tests/standalone.json/0 | {
"file_path": "AdaMix/templates/adding_a_new_model/tests/standalone.json",
"repo_id": "AdaMix",
"token_count": 149
} | 65 |
# coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | AdaMix/tests/test_cli.py/0 | {
"file_path": "AdaMix/tests/test_cli.py",
"repo_id": "AdaMix",
"token_count": 375
} | 66 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/tests/test_logging.py/0 | {
"file_path": "AdaMix/tests/test_logging.py",
"repo_id": "AdaMix",
"token_count": 1534
} | 67 |
# coding=utf-8
# Copyright 2018 LXMERT Authors, The Hugging Face Team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required b... | AdaMix/tests/test_modeling_lxmert.py/0 | {
"file_path": "AdaMix/tests/test_modeling_lxmert.py",
"repo_id": "AdaMix",
"token_count": 13691
} | 68 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | AdaMix/tests/test_modeling_tapas.py/0 | {
"file_path": "AdaMix/tests/test_modeling_tapas.py",
"repo_id": "AdaMix",
"token_count": 21540
} | 69 |
# coding=utf-8
# Copyright 2020 HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | AdaMix/tests/test_modeling_tf_funnel.py/0 | {
"file_path": "AdaMix/tests/test_modeling_tf_funnel.py",
"repo_id": "AdaMix",
"token_count": 6594
} | 70 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | AdaMix/tests/test_modeling_tf_transfo_xl.py/0 | {
"file_path": "AdaMix/tests/test_modeling_tf_transfo_xl.py",
"repo_id": "AdaMix",
"token_count": 10349
} | 71 |
# coding=utf-8
# Copyright 2019 Hugging Face inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | AdaMix/tests/test_tokenization_albert.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_albert.py",
"repo_id": "AdaMix",
"token_count": 3513
} | 72 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | AdaMix/tests/test_tokenization_fsmt.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_fsmt.py",
"repo_id": "AdaMix",
"token_count": 2935
} | 73 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/tests/test_tokenization_reformer.py/0 | {
"file_path": "AdaMix/tests/test_tokenization_reformer.py",
"repo_id": "AdaMix",
"token_count": 5489
} | 74 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/tests/test_trainer_distributed.py/0 | {
"file_path": "AdaMix/tests/test_trainer_distributed.py",
"repo_id": "AdaMix",
"token_count": 2069
} | 75 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | AdaMix/utils/notification_service.py/0 | {
"file_path": "AdaMix/utils/notification_service.py",
"repo_id": "AdaMix",
"token_count": 3412
} | 76 |
## Baselines
### moveOnSpline
- Plan and move on a minimum jerk trajectory using ground truth poses of gates:
- Generate an AirSim settings.json file (same as the one provided in releases)
```shell
$ cd baselines;
$ python generate_settings_file.py
```
- Start the AirSim Neurips binary, [as explained a... | AirSim-Drone-Racing-Lab/docs/baselines.md/0 | {
"file_path": "AirSim-Drone-Racing-Lab/docs/baselines.md",
"repo_id": "AirSim-Drone-Racing-Lab",
"token_count": 476
} | 77 |
import os
import sys
from scipy.spatial.transform import Rotation
import math
from airsimdroneracingvae.utils import to_eularian_angles, to_quaternion
import numpy as np
from airsimdroneracingvae.types import Pose, Vector3r, Quaternionr
def interp_vector(a, b, n):
delta = (b-a)/(n-1)
list_vecs = []
for i i... | AirSim-Drone-Racing-VAE-Imitation/racing_utils/geom_utils.py/0 | {
"file_path": "AirSim-Drone-Racing-VAE-Imitation/racing_utils/geom_utils.py",
"repo_id": "AirSim-Drone-Racing-VAE-Imitation",
"token_count": 3170
} | 78 |
# Game of Drones: A NeurIPS 2019 Competition
**Note: This repository is not being maintained any more. Please use [AirSim Drone Racing Lab](https://github.com/microsoft/AirSim-Drone-Racing-Lab).**
## Quickstart
- [Website](https://microsoft.github.io/AirSim-NeurIPS2019-Drone-Racing/)
- [Register](https://www.microsof... | AirSim-NeurIPS2019-Drone-Racing/README.md/0 | {
"file_path": "AirSim-NeurIPS2019-Drone-Racing/README.md",
"repo_id": "AirSim-NeurIPS2019-Drone-Racing",
"token_count": 9711
} | 79 |
#!/bin/bash
wget -c https://github.com/microsoft/AirSim-NeurIPS2019-Drone-Racing/releases/download/v0.3.0-linux/AirSim.zip;
mkdir -p /home/$USER/Documents/AirSim;
unzip AirSim.zip;
mv AirSim AirSim_Training;
wget --directory-prefix=AirSim_Training/AirSimExe/Content/Paks -c https://github.com/microsoft/AirSim-NeurIPS201... | AirSim-NeurIPS2019-Drone-Racing/download_training_binaries.sh/0 | {
"file_path": "AirSim-NeurIPS2019-Drone-Racing/download_training_binaries.sh",
"repo_id": "AirSim-NeurIPS2019-Drone-Racing",
"token_count": 348
} | 80 |
# See here for image contents: https://github.com/microsoft/vscode-dev-containers/tree/v0.166.1/containers/python-3/.devcontainer/base.Dockerfile
# [Choice] Python version: 3, 3.9, 3.8, 3.7, 3.6
ARG VARIANT="3.8"
ARG TARGETPLATFORM="linux/amd64"
FROM --platform="${TARGETPLATFORM}" mcr.microsoft.com/vscode/devcontainer... | AzureTRE/.devcontainer/Dockerfile/0 | {
"file_path": "AzureTRE/.devcontainer/Dockerfile",
"repo_id": "AzureTRE",
"token_count": 1961
} | 81 |
<!-- markdownlint-disable MD041 -->
## 0.18.0 (Unreleased)
**BREAKING CHANGES & MIGRATIONS**:
FEATURES:
ENHANCEMENTS:
BUG FIXES:
* Update to Resource Processor Image, now using Ubuntu 22.04 (jammy). Part of ([#3523](https://github.com/microsoft/AzureTRE/issues/3523))
* Remove TLS1.0/1.1 support from Application Gat... | AzureTRE/CHANGELOG.md/0 | {
"file_path": "AzureTRE/CHANGELOG.md",
"repo_id": "AzureTRE",
"token_count": 20098
} | 82 |
# To enable ssh & remote debugging on app service change the base image to the one below
# FROM mcr.microsoft.com/azure-functions/python:4-python3.8-appservice as base
FROM mcr.microsoft.com/azure-functions/python:4-python3.8-slim as base
COPY requirements.txt /
RUN pip install --no-cache-dir -r /requirements.txt
FR... | AzureTRE/airlock_processor/Dockerfile/0 | {
"file_path": "AzureTRE/airlock_processor/Dockerfile",
"repo_id": "AzureTRE",
"token_count": 250
} | 83 |
from mock import patch, MagicMock
from DataDeletionTrigger import delete_blob_and_container_if_last_blob
from shared_code.blob_operations import get_storage_endpoint_suffix
class TestDataDeletionTrigger():
@patch("DataDeletionTrigger.BlobServiceClient")
def test_delete_blob_and_container_if_last_blob_delete... | AzureTRE/airlock_processor/tests/test_data_deletion_trigger.py/0 | {
"file_path": "AzureTRE/airlock_processor/tests/test_data_deletion_trigger.py",
"repo_id": "AzureTRE",
"token_count": 725
} | 84 |
from typing import Union
from fastapi.exceptions import RequestValidationError
from fastapi.openapi.constants import REF_PREFIX
from fastapi.openapi.utils import validation_error_response_definition
from pydantic import ValidationError
from fastapi import Request, status
from fastapi.responses import PlainTextResponse... | AzureTRE/api_app/api/errors/validation_error.py/0 | {
"file_path": "AzureTRE/api_app/api/errors/validation_error.py",
"repo_id": "AzureTRE",
"token_count": 235
} | 85 |
from typing import Optional
from fastapi import APIRouter, Depends, HTTPException, status
from pydantic import parse_obj_as
from api.helpers import get_repository
from db.errors import EntityVersionExist, InvalidInput
from db.repositories.resource_templates import ResourceTemplateRepository
from models.domain.resource... | AzureTRE/api_app/api/routes/workspace_templates.py/0 | {
"file_path": "AzureTRE/api_app/api/routes/workspace_templates.py",
"repo_id": "AzureTRE",
"token_count": 828
} | 86 |
import uuid
from typing import List, Optional, Union
from pydantic import parse_obj_as
from core import config
from db.errors import DuplicateEntity, EntityDoesNotExist, EntityVersionExist, InvalidInput
from db.repositories.base import BaseRepository
from models.domain.resource import ResourceType
from models.domain.... | AzureTRE/api_app/db/repositories/resource_templates.py/0 | {
"file_path": "AzureTRE/api_app/db/repositories/resource_templates.py",
"repo_id": "AzureTRE",
"token_count": 3478
} | 87 |
from collections import namedtuple
from typing import List
from pydantic import BaseModel, Field
RoleAssignment = namedtuple("RoleAssignment", "resource_id, role_id")
class User(BaseModel):
id: str
name: str
email: str
roles: List[str] = Field([])
roleAssignments: List[RoleAssignment] = Field([... | AzureTRE/api_app/models/domain/authentication.py/0 | {
"file_path": "AzureTRE/api_app/models/domain/authentication.py",
"repo_id": "AzureTRE",
"token_count": 108
} | 88 |
from pydantic import BaseModel
def get_sample_airlock_request_container_url(container_url: str) -> dict:
return {
"containerUrl": container_url
}
class AirlockRequestTokenInResponse(BaseModel):
containerUrl: str
class Config:
schema_extra = {
"example": {
... | AzureTRE/api_app/models/schemas/airlock_request_url.py/0 | {
"file_path": "AzureTRE/api_app/models/schemas/airlock_request_url.py",
"repo_id": "AzureTRE",
"token_count": 176
} | 89 |
from models.domain.resource import ResourceType
from models.domain.resource_template import CustomAction, ResourceTemplate, Property
from models.schemas.resource_template import ResourceTemplateInCreate, ResourceTemplateInResponse
def get_sample_workspace_template_object(template_name: str = "tre-workspace-base") -> ... | AzureTRE/api_app/models/schemas/workspace_template.py/0 | {
"file_path": "AzureTRE/api_app/models/schemas/workspace_template.py",
"repo_id": "AzureTRE",
"token_count": 2097
} | 90 |
from azure.servicebus import ServiceBusMessage
from azure.servicebus.aio import ServiceBusClient
from pydantic import parse_obj_as
from db.repositories.resources_history import ResourceHistoryRepository
from service_bus.substitutions import substitute_properties
from models.domain.resource_template import PipelineStep
... | AzureTRE/api_app/service_bus/helpers.py/0 | {
"file_path": "AzureTRE/api_app/service_bus/helpers.py",
"repo_id": "AzureTRE",
"token_count": 3091
} | 91 |
# import os
# import sys
# TEST_DIR = os.path.dirname(os.path.abspath(__file__))
# PROJECT_DIR = os.path.abspath(os.path.join(TEST_DIR, os.pardir, 'api'))
# sys.path.insert(0, PROJECT_DIR)
| AzureTRE/api_app/tests_ma/test_api/__init__.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_api/__init__.py",
"repo_id": "AzureTRE",
"token_count": 84
} | 92 |
import json
import pytest
from mock import patch
from starlette import status
from services.authentication import get_current_admin_user, get_current_tre_user_or_tre_admin
from db.errors import DuplicateEntity, EntityDoesNotExist, EntityVersionExist, InvalidInput, UnableToAccessDatabase
from models.domain.resource im... | AzureTRE/api_app/tests_ma/test_api/test_routes/test_user_resource_templates.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_api/test_routes/test_user_resource_templates.py",
"repo_id": "AzureTRE",
"token_count": 3428
} | 93 |
from unittest.mock import AsyncMock
import pytest
import pytest_asyncio
from mock import patch
from db.errors import DuplicateEntity, EntityDoesNotExist
from db.repositories.shared_services import SharedServiceRepository
from db.repositories.operations import OperationRepository
from models.domain.shared_service impor... | AzureTRE/api_app/tests_ma/test_db/test_repositories/test_shared_service_repository.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_db/test_repositories/test_shared_service_repository.py",
"repo_id": "AzureTRE",
"token_count": 1606
} | 94 |
from mock import patch
from services import azure_resource_status
from azure.mgmt.compute.models import VirtualMachineInstanceView, InstanceViewStatus
@patch("services.azure_resource_status.get_azure_vm_instance_view")
def test_get_azure_resource_status__correct_status_returned_for_vm(get_vm_instance_view_mock):
... | AzureTRE/api_app/tests_ma/test_services/test_azure_resource_status.py/0 | {
"file_path": "AzureTRE/api_app/tests_ma/test_services/test_azure_resource_status.py",
"repo_id": "AzureTRE",
"token_count": 393
} | 95 |
import click
class SharedServiceTemplateContext(object):
def __init__(self, template_name: str):
self.template_name = template_name
pass_shared_service_template_context = click.make_pass_decorator(SharedServiceTemplateContext)
| AzureTRE/cli/tre/commands/shared_service_templates/contexts.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/shared_service_templates/contexts.py",
"repo_id": "AzureTRE",
"token_count": 75
} | 96 |
import json
import logging
import click
from tre.api_client import ApiClient
from tre.output import output, output_option, query_option
@click.group(name="workspace-service-templates", help="List workspace-service-templates ")
def workspace_service_templates():
pass
@click.command(name="list", help="List works... | AzureTRE/cli/tre/commands/workspace_service_templates/workspace_service_templates.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/workspace_service_templates/workspace_service_templates.py",
"repo_id": "AzureTRE",
"token_count": 648
} | 97 |
import logging
import click
from tre.commands.operation import get_operation_id_completion, operation_show
from tre.output import output_option, query_option
from tre.api_client import ApiClient
from .contexts import pass_workspace_service_operation_context, WorkspaceServiceOperationContext
def operation_id_completi... | AzureTRE/cli/tre/commands/workspaces/workspace_services/operation.py/0 | {
"file_path": "AzureTRE/cli/tre/commands/workspaces/workspace_services/operation.py",
"repo_id": "AzureTRE",
"token_count": 909
} | 98 |
data "local_file" "airlock_processor_version" {
filename = "${path.root}/../../airlock_processor/_version.py"
}
locals {
version = replace(replace(replace(data.local_file.airlock_processor_version.content, "__version__ = \"", ""), "\"", ""), "\n", "")
}
resource "azurerm_service_plan" "airlock_plan" {
name ... | AzureTRE/core/terraform/airlock/airlock_processor.tf/0 | {
"file_path": "AzureTRE/core/terraform/airlock/airlock_processor.tf",
"repo_id": "AzureTRE",
"token_count": 2718
} | 99 |
output "app_gateway_fqdn" {
value = azurerm_public_ip.appgwpip.fqdn
}
output "app_gateway_name" {
value = azurerm_application_gateway.agw.name
}
output "static_web_storage" {
value = azurerm_storage_account.staticweb.name
}
| AzureTRE/core/terraform/appgateway/outputs.tf/0 | {
"file_path": "AzureTRE/core/terraform/appgateway/outputs.tf",
"repo_id": "AzureTRE",
"token_count": 95
} | 100 |
---
# cloud-config
package_upgrade: true
apt:
sources:
docker.list:
source: deb [arch=amd64]
https://download.docker.com/linux/ubuntu $RELEASE stable
keyid: 9DC858229FC7DD38854AE2D88D81803C0EBFCD88
keyserver: hkp://keyserver.ubuntu.com:80
azure-cli.list:
source: deb [arch=amd64... | AzureTRE/core/terraform/resource_processor/vmss_porter/cloud-config.yaml/0 | {
"file_path": "AzureTRE/core/terraform/resource_processor/vmss_porter/cloud-config.yaml",
"repo_id": "AzureTRE",
"token_count": 1614
} | 101 |
#!/bin/bash
set -euo pipefail
# Use this for debug only
# set -o xtrace
# AZURE_CORE_OUTPUT=jsonc # force CLI output to JSON for the script (user can still change default for interactive usage in the dev container)
function show_usage()
{
cat << USAGE
Utility script for creating an automation administrator for TR... | AzureTRE/devops/scripts/aad/create_automation_administrator.sh/0 | {
"file_path": "AzureTRE/devops/scripts/aad/create_automation_administrator.sh",
"repo_id": "AzureTRE",
"token_count": 1454
} | 102 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# set -o xtrace
if [[ -z ${TRE_ID:-} ]]; then
echo "TRE_ID environment variable must be set."
exit 1
fi
core_rg_name="rg-${TRE_ID}"
fw_name="fw-${TRE_ID}"
agw_name="agw-$TRE_ID"
# if the resource group doesn't exist, no need to continue this script.
#... | AzureTRE/devops/scripts/control_tre.sh/0 | {
"file_path": "AzureTRE/devops/scripts/control_tre.sh",
"repo_id": "AzureTRE",
"token_count": 2377
} | 103 |
#!/bin/bash
# This script register a bundle with the TRE API. It relies on the bundle
# pre-existing in the remote repository (i.e. has been publish beforehand).
set -o errexit
set -o pipefail
# Uncomment this line to see each command for debugging (careful: this will show secrets!)
# set -o xtrace
function usage() ... | AzureTRE/devops/scripts/register_bundle_with_api.sh/0 | {
"file_path": "AzureTRE/devops/scripts/register_bundle_with_api.sh",
"repo_id": "AzureTRE",
"token_count": 2059
} | 104 |
# Configuring Airlock Review feature
Airlock Review feature allows to setup a process for manually reviewing Airlock requests. When using this feature, Airlock Manager (a role with privileges of reviewing Airlock requests) is able to create Review User Resource (VM) and use it to review the data from.
For information... | AzureTRE/docs/tre-admins/configure-airlock-review.md/0 | {
"file_path": "AzureTRE/docs/tre-admins/configure-airlock-review.md",
"repo_id": "AzureTRE",
"token_count": 813
} | 105 |
# Installing workspace service and user resource
## Publish and register a workspace service template
We will use the [Guacamole workspace service bundle](../../tre-templates/workspace-services/guacamole.md) for the purposes of this tutorial; a template that provides Virtual Desktop functionality allowing the deploym... | AzureTRE/docs/tre-admins/setup-instructions/installing-workspace-service-and-user-resource.md/0 | {
"file_path": "AzureTRE/docs/tre-admins/setup-instructions/installing-workspace-service-and-user-resource.md",
"repo_id": "AzureTRE",
"token_count": 1472
} | 106 |
# End-to-end (E2E) tests
## Prerequisites
1. Authentication and Authorization configuration set up as noted [here](../tre-admins/auth.md)
1. An Azure Tre deployed environment.
## Registering bundles to run End-to-end tests
End-to-end tests depend on certain bundles to be registered within the TRE API.
When End-to-... | AzureTRE/docs/tre-developers/end-to-end-tests.md/0 | {
"file_path": "AzureTRE/docs/tre-developers/end-to-end-tests.md",
"repo_id": "AzureTRE",
"token_count": 273
} | 107 |
# Guacamole User Resource Service bundle (Windows)
This is a User Resource Service template. It defines a VM to be used by TRE Airlock Managers with [Guacamole server](https://guacamole.apache.org/).
It blocks all inbound traffic to the internet and allows only RDP connections from within the vnet.
When deployed in a... | AzureTRE/docs/tre-templates/user-resources/import-reviewvm.md/0 | {
"file_path": "AzureTRE/docs/tre-templates/user-resources/import-reviewvm.md",
"repo_id": "AzureTRE",
"token_count": 231
} | 108 |
# Authoring templates
Azure TRE workspaces, workspace services, shared services, and user resources are [Porter](https://porter.sh/) bundles. Porter bundles are based on [Cloud Native Application Bundles (CNAB)](https://cnab.io/).
Authors are free to choose the technology stack for provisioning resources (e.g., ARM t... | AzureTRE/docs/tre-workspace-authors/authoring-workspace-templates.md/0 | {
"file_path": "AzureTRE/docs/tre-workspace-authors/authoring-workspace-templates.md",
"repo_id": "AzureTRE",
"token_count": 2245
} | 109 |
# Importing and exporting data with Airlock
This guide will take you through the process of importing data into a TRE workspace, and exporting data from a workspace to the outside world, using the Airlock feature.
The Airlock feature is intended for ad-hoc use when you need to bring in and export out files that you ... | AzureTRE/docs/using-tre/tre-for-research/importing-exporting-data-airlock.md/0 | {
"file_path": "AzureTRE/docs/using-tre/tre-for-research/importing-exporting-data-airlock.md",
"repo_id": "AzureTRE",
"token_count": 1655
} | 110 |
import logging
import backoff
from httpx import TimeoutException
from e2e_tests.helpers import get_full_endpoint
from e2e_tests.resources import strings
LOGGER = logging.getLogger(__name__)
async def delete_done(client, operation_endpoint, headers):
delete_terminal_states = [strings.RESOURCE_STATUS_DELETED, stri... | AzureTRE/e2e_tests/resources/deployment.py/0 | {
"file_path": "AzureTRE/e2e_tests/resources/deployment.py",
"repo_id": "AzureTRE",
"token_count": 891
} | 111 |
{% extends "base.html" %}
{% block outdated %}
You're not viewing the latest version.
<a href="{{ '../' ~ base_url }}">
<strong>Click here to go to latest.</strong>
</a>
</script>
{% endblock %}
{% block analytics %}
<script type="text/javascript">
(function(c,l,a,r,i,t,y){
c[a]=c[a]||function(){(c[a]... | AzureTRE/mkdocs-overrides/main.html/0 | {
"file_path": "AzureTRE/mkdocs-overrides/main.html",
"repo_id": "AzureTRE",
"token_count": 252
} | 112 |
# syntax=docker/dockerfile-upstream:1.4.0
FROM --platform=linux/amd64 debian:bullseye-slim
# PORTER_INIT
# PORTER_MIXINS
# Use the BUNDLE_DIR build argument to copy files into the bundle
COPY --link . ${BUNDLE_DIR}//
| AzureTRE/templates/shared_services/admin-vm/Dockerfile.tmpl/0 | {
"file_path": "AzureTRE/templates/shared_services/admin-vm/Dockerfile.tmpl",
"repo_id": "AzureTRE",
"token_count": 89
} | 113 |
{
"serviceProviderConnections": {
"serviceBus": {
"parameterValues": {
"connectionString": "@appsetting('serviceBus_connectionString')"
},
"serviceProvider": {
"id": "/serviceProviders/serviceBus"
},
"displayName": "core-service-bus"
},
"Smtp": {
"displa... | AzureTRE/templates/shared_services/airlock_notifier/app/connections.json/0 | {
"file_path": "AzureTRE/templates/shared_services/airlock_notifier/app/connections.json",
"repo_id": "AzureTRE",
"token_count": 542
} | 114 |
variable "tre_id" {
type = string
}
variable "domain_prefix" {
type = string
}
variable "cert_name" {
type = string
}
variable "tre_resource_id" {
type = string
description = "Resource ID"
}
| AzureTRE/templates/shared_services/certs/terraform/variables.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/certs/terraform/variables.tf",
"repo_id": "AzureTRE",
"token_count": 80
} | 115 |
ID=__CHANGE_ME__
AZURE_LOCATION=__CHANGE_ME__
| AzureTRE/templates/shared_services/databricks-auth/.env.sample/0 | {
"file_path": "AzureTRE/templates/shared_services/databricks-auth/.env.sample",
"repo_id": "AzureTRE",
"token_count": 22
} | 116 |
output "nexus_allowed_fqdns_list" {
value = jsonencode(local.nexus_allowed_fqdns_list)
}
output "workspace_vm_allowed_fqdns_list" {
value = jsonencode(local.workspace_vm_allowed_fqdns_list)
}
output "private_ip_addresses" {
value = jsonencode(azurerm_network_interface.nexus.private_ip_addresses)
}
output "conn... | AzureTRE/templates/shared_services/sonatype-nexus-vm/terraform/outputs.tf/0 | {
"file_path": "AzureTRE/templates/shared_services/sonatype-nexus-vm/terraform/outputs.tf",
"repo_id": "AzureTRE",
"token_count": 178
} | 117 |
resource "azurerm_machine_learning_workspace" "aml_workspace" {
name = local.workspace_name
resource_group_name = data.azurerm_resource_group.ws.name
location = data.azurerm_resource_group.ws.location
application_insights_id = azurerm_application_ins... | AzureTRE/templates/workspace_services/azureml/terraform/main.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/azureml/terraform/main.tf",
"repo_id": "AzureTRE",
"token_count": 945
} | 118 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
export TF_LOG=""
terraform init -input=false -backend=true -reconfigure \
-backend-config="resource_group_name=${TF_VAR_mgmt_resource_group_name?}" \
-backend-config="storage_account_name=${TF_VAR_mgmt_storage_account_name?}" \
-backend-config="con... | AzureTRE/templates/workspace_services/azureml/user_resources/aml_compute/terraform/deploy.sh/0 | {
"file_path": "AzureTRE/templates/workspace_services/azureml/user_resources/aml_compute/terraform/deploy.sh",
"repo_id": "AzureTRE",
"token_count": 199
} | 119 |
resource "azurerm_databricks_workspace" "databricks" {
name = local.databricks_workspace_name
resource_group_name = data.azurerm_resource_group.ws.name
location = data.azurerm_resource_group.ws.location
sku ... | AzureTRE/templates/workspace_services/databricks/terraform/main.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/databricks/terraform/main.tf",
"repo_id": "AzureTRE",
"token_count": 754
} | 120 |
data "azurerm_resource_group" "ws" {
name = "rg-${var.tre_id}-ws-${local.short_workspace_id}"
}
data "azurerm_virtual_network" "ws" {
name = "vnet-${var.tre_id}-ws-${local.short_workspace_id}"
resource_group_name = "rg-${var.tre_id}-ws-${local.short_workspace_id}"
}
data "azurerm_subnet" "web_app... | AzureTRE/templates/workspace_services/gitea/terraform/data.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/gitea/terraform/data.tf",
"repo_id": "AzureTRE",
"token_count": 1090
} | 121 |
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you ... | AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/main/java/org/apache/guacamole/auth/azuretre/AuthenticationProviderService.java/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/main/java/org/apache/guacamole/auth/azuretre/AuthenticationProviderService.java",
"repo_id": "AzureTRE",
"token_count": 1454
} | 122 |
/**
*
*/
package org.apache.guacamole.auth.azuretre;
| AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/test/java/org/apache/guacamole/auth/azuretre/package-info.java/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/test/java/org/apache/guacamole/auth/azuretre/package-info.java",
"repo_id": "AzureTRE",
"token_count": 23
} | 123 |
resource "azurerm_network_interface" "internal" {
name = "internal-nic-${local.service_resource_name_suffix}"
location = data.azurerm_resource_group.ws.location
resource_group_name = data.azurerm_resource_group.ws.name
tags = local.tre_user_resources_tags
ip_configura... | AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-export-reviewvm/terraform/windowsvm.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-export-reviewvm/terraform/windowsvm.tf",
"repo_id": "AzureTRE",
"token_count": 3077
} | 124 |
resource "azurerm_network_interface" "internal" {
name = "internal-nic-${local.service_resource_name_suffix}"
location = data.azurerm_resource_group.ws.location
resource_group_name = data.azurerm_resource_group.ws.name
tags = local.tre_user_resources_tags
ip_configurat... | AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-linuxvm/terraform/linuxvm.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-linuxvm/terraform/linuxvm.tf",
"repo_id": "AzureTRE",
"token_count": 2096
} | 125 |
data "azurerm_resource_group" "ws" {
name = "rg-${var.tre_id}-ws-${local.short_workspace_id}"
}
data "azurerm_resource_group" "core" {
name = "rg-${var.tre_id}"
}
data "azurerm_virtual_network" "ws" {
name = "vnet-${var.tre_id}-ws-${local.short_workspace_id}"
resource_group_name = data.azurerm_... | AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-windowsvm/terraform/data.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-windowsvm/terraform/data.tf",
"repo_id": "AzureTRE",
"token_count": 651
} | 126 |
locals {
short_service_id = substr(var.tre_resource_id, -4, -1)
short_workspace_id = substr(var.workspace_id, -4, -1)
aad_tenant_id = data.azurerm_key_vault_secret.aad_tenant_id.value
workspace_resource_name_suffix = "${var.tre_id}-ws-${local.short_workspace_id}"
key... | AzureTRE/templates/workspace_services/health-services/terraform/locals.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/health-services/terraform/locals.tf",
"repo_id": "AzureTRE",
"token_count": 412
} | 127 |
data "local_file" "deploypl_compute_cluster" {
filename = "${path.module}/nopipcompute/deploypl_compute_cluster.json"
}
# need to add existing VNET
resource "azurerm_resource_group_template_deployment" "deploy_compute_cluster" {
name = "dpl-${local.service_resource_name_suffix}_deploy_compute_cluste... | AzureTRE/templates/workspace_services/innereye/terraform/compute.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/innereye/terraform/compute.tf",
"repo_id": "AzureTRE",
"token_count": 801
} | 128 |
# This file will be auto populated by Terraform during deployment
| AzureTRE/templates/workspace_services/mlflow/mlflow-vm-config/linux/config.sh/0 | {
"file_path": "AzureTRE/templates/workspace_services/mlflow/mlflow-vm-config/linux/config.sh",
"repo_id": "AzureTRE",
"token_count": 13
} | 129 |
# OHDSI Workspace Service
## IMPORTANT
- This workspace service does not work "out of the box". It requires additional networking configuration to work properly.
- Currently the only CDM data source supported by the workspace service is Azure Synapse.
Further details are provided in the [documentation](https://micros... | AzureTRE/templates/workspace_services/ohdsi/README.md/0 | {
"file_path": "AzureTRE/templates/workspace_services/ohdsi/README.md",
"repo_id": "AzureTRE",
"token_count": 98
} | 130 |
resource "random_password" "postgres_admin_password" {
length = 32
special = false
}
resource "random_password" "postgres_webapi_admin_password" {
length = 32
special = false
}
resource "random_password" "postgres_webapi_app_password" {
length = 32
special = false
}
resource "azurerm_key_vault_secret"... | AzureTRE/templates/workspace_services/ohdsi/terraform/atlas_database.tf/0 | {
"file_path": "AzureTRE/templates/workspace_services/ohdsi/terraform/atlas_database.tf",
"repo_id": "AzureTRE",
"token_count": 3631
} | 131 |
# syntax=docker/dockerfile-upstream:1.4.0
FROM --platform=linux/amd64 debian:bullseye-slim
# PORTER_INIT
RUN rm -f /etc/apt/apt.conf.d/docker-clean; echo 'Binary::apt::APT::Keep-Downloaded-Packages "true";' > /etc/apt/apt.conf.d/keep-cache
# Git is required for terraform_azurerm_environment_configuration
RUN --mount... | AzureTRE/templates/workspaces/airlock-import-review/Dockerfile.tmpl/0 | {
"file_path": "AzureTRE/templates/workspaces/airlock-import-review/Dockerfile.tmpl",
"repo_id": "AzureTRE",
"token_count": 514
} | 132 |
variable "key_vault_id" {
type = string
}
variable "workspace_resource_name_suffix" {
type = string
}
variable "workspace_owner_object_id" {
type = string
}
variable "tre_workspace_tags" {
type = map(string)
}
variable "aad_redirect_uris_b64" {
type = string # list of objects like [{"name": "my uri 1", "value... | AzureTRE/templates/workspaces/base/terraform/aad/variables.tf/0 | {
"file_path": "AzureTRE/templates/workspaces/base/terraform/aad/variables.tf",
"repo_id": "AzureTRE",
"token_count": 146
} | 133 |
data "azurerm_client_config" "current" {}
resource "azurerm_key_vault" "kv" {
name = local.keyvault_name
location = azurerm_resource_group.ws.location
resource_group_name = azurerm_resource_group.ws.name
sku_name = "standard"
purge_protection_enabled =... | AzureTRE/templates/workspaces/base/terraform/keyvault.tf/0 | {
"file_path": "AzureTRE/templates/workspaces/base/terraform/keyvault.tf",
"repo_id": "AzureTRE",
"token_count": 2191
} | 134 |
#!/bin/bash
set -o errexit
set -o pipefail
# Uncomment this line to see each command for debugging (careful: this will show secrets!)
# set -o xtrace
function usage() {
cat <<USAGE
Usage: $0 --workspace-api-client-id some_guid --aad-redirect-uris-b64 json_array_of_urls_in_base64 --register-aad-application fal... | AzureTRE/templates/workspaces/base/update_redirect_urls.sh/0 | {
"file_path": "AzureTRE/templates/workspaces/base/update_redirect_urls.sh",
"repo_id": "AzureTRE",
"token_count": 982
} | 135 |
{
"short_name": "React App",
"name": "Create React App Sample",
"icons": [
{
"src": "favicon.ico",
"sizes": "64x64 32x32 24x24 16x16",
"type": "image/x-icon"
}
],
"start_url": ".",
"display": "standalone",
"theme_color": "#000000",
"background_color": "#ffffff"
}
| AzureTRE/ui/app/public/manifest.json/0 | {
"file_path": "AzureTRE/ui/app/public/manifest.json",
"repo_id": "AzureTRE",
"token_count": 141
} | 136 |
import { MessageBar, MessageBarType, Link as FluentLink, Icon, } from '@fluentui/react';
import React, { useState } from 'react';
import { APIError } from '../../models/exceptions';
interface ExceptionLayoutProps {
e: APIError
}
export const ExceptionLayout: React.FunctionComponent<ExceptionLayoutProps> = (props: E... | AzureTRE/ui/app/src/components/shared/ExceptionLayout.tsx/0 | {
"file_path": "AzureTRE/ui/app/src/components/shared/ExceptionLayout.tsx",
"repo_id": "AzureTRE",
"token_count": 1288
} | 137 |
import React, { useContext, useEffect, useState } from 'react';
import { WorkspaceContext } from '../../contexts/WorkspaceContext';
import { AppRolesContext } from '../../contexts/AppRolesContext';
import { MessageBar, MessageBarType } from '@fluentui/react';
import { ApiEndpoint } from '../../models/apiEndpoints';
imp... | AzureTRE/ui/app/src/components/shared/SecuredByRole.tsx/0 | {
"file_path": "AzureTRE/ui/app/src/components/shared/SecuredByRole.tsx",
"repo_id": "AzureTRE",
"token_count": 911
} | 138 |
import React from 'react';
import { useInterval } from './useInterval';
import { HttpMethod, useAuthApiCall } from '../../../hooks/useAuthApiCall';
import { ApiEndpoint } from '../../../models/apiEndpoints';
import { TRENotification } from '../../../models/treNotification';
import { Operation } from '../../../models/op... | AzureTRE/ui/app/src/components/shared/notifications/NotificationPoller.tsx/0 | {
"file_path": "AzureTRE/ui/app/src/components/shared/notifications/NotificationPoller.tsx",
"repo_id": "AzureTRE",
"token_count": 514
} | 139 |
import React from "react";
import { Workspace } from "../models/workspace";
import { CostResource } from "../models/costs";
export const WorkspaceContext = React.createContext({
roles: [] as Array<string>,
costs: [] as Array<CostResource>,
setCosts: (costs: Array<CostResource>) => { },
setRoles: (roles: Array<... | AzureTRE/ui/app/src/contexts/WorkspaceContext.ts/0 | {
"file_path": "AzureTRE/ui/app/src/contexts/WorkspaceContext.ts",
"repo_id": "AzureTRE",
"token_count": 140
} | 140 |
import { Operation } from "./operation";
import { Resource } from "./resource";
import { Workspace } from "./workspace";
export interface TRENotification {
operation: Operation,
resource: Resource,
workspace?: Workspace
}
| AzureTRE/ui/app/src/models/treNotification.ts/0 | {
"file_path": "AzureTRE/ui/app/src/models/treNotification.ts",
"repo_id": "AzureTRE",
"token_count": 71
} | 141 |
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r e 438829057
t e 356837642
e n 324273336
l t;</w> 305179650
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o n 247449736
i n</w> 231407338
an d</w> 22... | BioGPT/data/biogpt_large_bpecodes/0 | {
"file_path": "BioGPT/data/biogpt_large_bpecodes",
"repo_id": "BioGPT",
"token_count": 418071
} | 142 |
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