geno-lewm-data / split_integrity.json
abdelstark's picture
Release dataset for geno-lewm-v0.1.0-r1 (sha256:861ec142cc87f3fac01751ef538553356dfba439e6da99064b4adb121e75c215)
fc359fc verified
Raw
History Blame Contribute Delete
4.24 kB
{
"files": [
{
"comparable_keys": 10485,
"label_counts": {},
"path": "carbon/source-mix-windows.jsonl",
"records": 20000,
"sha256": "sha256:66e924d75f0090141fa9f587eed34d7a6a80f23e0436bcecc817dd54f28d4129",
"size_bytes": 84215725,
"split": "train_carbon"
},
{
"comparable_keys": 1118,
"label_counts": {},
"path": "gnomad/v4.1/variants.parquet",
"records": 1118,
"sha256": "sha256:49db46b995b54cfe65280653e7b00dc7c6022d053c15e6819d7a5c18615f0b8d",
"size_bytes": 48694,
"split": "train_gnomad_common"
},
{
"comparable_keys": 976,
"label_counts": {},
"path": "placed/gnomad-common-windows.jsonl",
"records": 976,
"sha256": "sha256:ec76046771a163fbc22f326df26e2a332767eaa045dd919718c1cf86c4fbe0ac",
"size_bytes": 4186560,
"split": "train_placed_gnomad_common"
},
{
"comparable_keys": 4315200,
"label_counts": {
"B": 202286,
"LB": 1124417,
"LP": 150056,
"OTHER": 409873,
"P": 173544,
"VUS": 2255024
},
"path": "clinvar/2026-04-15/variants.parquet",
"records": 4315200,
"sha256": "sha256:4d690346cdade5113a722f9f72cbe4781bd74ee41c6313a3d04d990a02209e3f",
"size_bytes": 62502357,
"split": "eval_clinvar"
}
],
"generated_at": "2026-06-05T09:35:13Z",
"generated_by": "tools.release.dataset_integrity",
"leakage_checks": [
{
"examples": [],
"failure_reason": "",
"name": "no_shared_comparable_keys_between_train_and_eval",
"overlap_count": 0,
"split_a": "train_carbon",
"split_a_comparable_keys": 10485,
"split_b": "eval_clinvar",
"split_b_comparable_keys": 4315200,
"status": "passed"
},
{
"examples": [],
"failure_reason": "",
"name": "no_shared_comparable_keys_between_train_and_eval",
"overlap_count": 0,
"split_a": "train_gnomad_common",
"split_a_comparable_keys": 1118,
"split_b": "eval_clinvar",
"split_b_comparable_keys": 4315200,
"status": "passed"
},
{
"examples": [],
"failure_reason": "",
"name": "no_shared_comparable_keys_between_train_and_eval",
"overlap_count": 0,
"split_a": "train_placed_gnomad_common",
"split_a_comparable_keys": 976,
"split_b": "eval_clinvar",
"split_b_comparable_keys": 4315200,
"status": "passed"
}
],
"manifest_sha256": "sha256:c3aa8f22b79e76fa5b6e3a43e02675cfc02d56dc7dc9fa36128c81874537016c",
"schema_version": "1.0.0",
"snapshot_id": "geno-lewm-data-v0.1.0-r1",
"splits": {
"eval_clinvar": {
"declared_records": 4315200,
"description": "held-out ClinVar SNV labels for first-experiment evaluation",
"files": [
"clinvar/2026-04-15/variants.parquet"
],
"label_counts": {
"B": 202286,
"LB": 1124417,
"LP": 150056,
"OTHER": 409873,
"P": 173544,
"VUS": 2255024
},
"labelled_records": 4315200,
"observed_records": 4315200,
"unlabelled_records": 0
},
"train_carbon": {
"declared_records": 20000,
"description": "Carbon source-mix genomic windows for representation and transition training",
"files": [
"carbon/source-mix-windows.jsonl"
],
"label_counts": {},
"labelled_records": 0,
"observed_records": 20000,
"unlabelled_records": 20000
},
"train_gnomad_common": {
"declared_records": 1118,
"description": "gnomAD common SNVs for edit sampling and common-variant context",
"files": [
"gnomad/v4.1/variants.parquet"
],
"label_counts": {},
"labelled_records": 0,
"observed_records": 1118,
"unlabelled_records": 1118
},
"train_placed_gnomad_common": {
"declared_records": 976,
"description": "reference-placed chr22 windows generated from gnomAD common variants for real-coordinate training",
"files": [
"placed/gnomad-common-windows.jsonl"
],
"label_counts": {},
"labelled_records": 0,
"observed_records": 976,
"unlabelled_records": 976
}
}
}