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import tensorflow as tf from scipy.stats import rankdata import numpy as np import os import time import datetime from argparse import ArgumentParser, ArgumentDefaultsHelpFormatter from builddata_softplus import * from capsuleNet import CapsE # Parameters # ================================================== parser = A...
[ "numpy.sum", "argparse.ArgumentParser", "tensorflow.Session", "scipy.stats.rankdata", "tensorflow.set_random_seed", "numpy.insert", "tensorflow.ConfigProto", "numpy.append", "tensorflow.Variable", "numpy.array", "numpy.reshape", "tensorflow.Graph", "os.path.join", "numpy.delete" ]
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#%% import matplotlib.pyplot as plt from numpy import sin, pi from cmath import phase import os def stringToComplex(s): s = s.replace('\n', '') s = s.replace('j', '') s = s.replace(' ', '') real, imag = tuple( s.split('+') ) real, imag = float(real), float(imag) return complex(real, imag) def ...
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import numpy from matchms import Spectrum from matplotlib import pyplot as plt def test_spectrum_plot_with_histogram_unspecified(): mz = numpy.array([10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 110], dtype="float") intensities = numpy.array([1, 1, 5, 5, 5, 5, 7, 7, 7, 9, 9], dtype="float") spectrum = Spectr...
[ "matchms.Spectrum", "numpy.array" ]
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# third party import numpy as np import pytest # syft absolute from syft import deserialize from syft import serialize from syft.core.adp.entity import Entity from syft.core.tensor.tensor import Tensor gonzalo = Entity(name="Gonzalo") @pytest.fixture(scope="function") def x() -> Tensor: x = Tensor(np.array([[1,...
[ "syft.deserialize", "syft.serialize", "pytest.fixture", "syft.core.adp.entity.Entity", "numpy.array" ]
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# -*- coding: utf-8 -*- ''' Multiclass Budget Support Vector Machine under POM6 ''' __author__ = "<NAME>" __date__ = "Apr. 2021" import numpy as np from MMLL.models.Common_to_all_POMs import Common_to_all_POMs from transitions import State from transitions.extensions import GraphMachine from sklearn.metri...
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import pytest import os import pandas as pd import riptable as rt from enum import IntEnum from numpy.testing import assert_array_equal from riptable import * from riptable import save_sds, load_sds from riptable import FastArray, Categorical, CatZero from riptable.rt_categorical import Categories from ript...
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import numpy as np from scipy import io, sparse, linalg # run this from elegant scipy chapter chem = np.load('chem-network.npy') gap = np.load('gap-network.npy') neuron_types = np.load('neuron-types.npy') neuron_ids = np.load('neurons.npy') A = chem + gap n = A.shape[0] c = (A + A.T) / 2 d = sparse.diags([np.sum(c, ax...
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''' Define the operations used to denoise the image. ''' import cv2 import numpy as np def denoise(frame, useMorphOps = True, useGaussianBlur = True): if useMorphOps: kernel = np.ones((5,5),np.uint8) frame = cv2.morphologyEx(frame, cv2.MORPH_OPEN, kernel) frame = cv2.morphologyEx(frame, cv2...
[ "cv2.morphologyEx", "numpy.ones", "cv2.GaussianBlur" ]
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""" ###################### EDGE ####################""" import numpy as np from collections import defaultdict class vertex: def __init__(self, type, node, id): """ :param node: """ self.id = id self.Type = type self.Cells = node self.Trains = [] ...
[ "collections.defaultdict", "numpy.unique" ]
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import numpy as np from matplotlib import pyplot as plt, gridspec as gridspec import seaborn as sns import matplotlib as mpl import matplotlib.cm as cm from rl_agents.utils import remap, constrain class DQNGraphics(object): """ Graphical visualization of the DQNAgent state-action values. """ RED ...
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import datetime as DT import numpy as NP import matplotlib.pyplot as PLT import matplotlib.colors as PLTC import scipy.constants as FCNST from astropy.io import fits from astropy.io import ascii from astropy.table import Table import progressbar as PGB import antenna_array as AA import geometry as GEOM import my_DSP_mo...
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from torch.autograd import Variable from net_gan_mnist import * import torch import torch.nn as nn import numpy as np from init import * class MNISTGanTrainer(object): def __init__(self, batch_size=64, latent_dims=100): super(MNISTGanTrainer, self).__init__() self.dis = Dis28x28() self.gen...
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from controller import * import random from keras.optimizers import Adam from keras.models import Sequential from keras.layers.core import Dense, Dropout from keras.utils.np_utils import to_categorical import numpy as np class CellItemType(enum.Enum): WALL = -1 EMPTY = 0 BODY = 1 HEAD = 2 FRUIT ...
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#!/usr/bin/env python # -*- coding: utf-8 -*- #%% from numpy import * import numpy as np import torch import aTEAM.nn.functional as aF #%% a = np.arange(10) a = a[:,None]+a[None,:] b = torch.from_numpy(a) print(np.roll(a, shift=[0,1],axis=[1,0])-aF.roll(b, shift=[0,1],axis=[1,0]).data.numpy()) print(np.roll(a, shift=[...
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"""Most test exploit the special case where simulate_moments just returns parameters.""" import itertools import warnings import numpy as np import pandas as pd import pytest from estimagic.estimation.estimate_msm import estimate_msm from estimagic.shared.check_option_dicts import check_numdiff_options from estimagic....
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#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Sun May 9 11:59:51 2021 @author: Daniel """ import numpy as np from get_sudoku import get_sudoku_ from copy import deepcopy def look_row(row): #creates local set for current square local_set_row = {i for i in range(1,10)} #iterates...
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import math import numpy as np import torch from sklearn.metrics import average_precision_score, roc_auc_score def choose_target(model,memory_s, memory_g, src_mem): u = model.memory_merge(memory_s[1], memory_g[1]) #[num_nodes,mem_d] u_norm = torch.norm(u, dim=1) #[num_nodes, 1] u_normalized = u/u_norm.view(-1,...
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__author__ = 'Zander' from pygame import gfxdraw from Vector2 import Vector2 from Vector4 import Vector4 from Vector3 import Vector3 from Matrix4 import Matrix4 import math, pygame import numpy as np class Renderer: def __init__(self, screen, width, height, scale=1): self.width = width self.heig...
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import astropy.units as u from numpy.linalg import norm from .izzo import lambert as lambert_izzo class Maneuver: r"""Class to represent a Maneuver. Each ``Maneuver`` consists on a list of impulses :math:`\Delta v_i` (changes in velocity) each one applied at a certain instant :math:`t_i`. You can ac...
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#!/usr/bin/env python # -*- coding: utf-8 -*- import numpy as np import importlib from cosyai.dataset.base import _BaseDataset from cosyai.util import check_config_none class RandSet(_BaseDataset): def __init__(self, conf): super().__init__(conf) check_config_none(conf, ["input_dim", "output_dim"...
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''' Code from https://github.com/matheusgadelha/MRTNet/blob/master/models/AutoEncoder.py https://github.com/matheusgadelha/MRTNet/blob/master/models/MRTDecoder.py revised by <NAME> ''' import torch import torch.nn as nn import numpy as np import math from torch.nn import Sequential, Linear, ModuleList tree_arch = {} ...
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# Copyright 2020 <NAME> # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, subl...
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""" Build JobStats (returned to the client after job completion) - based mostly on the DataFrame of collected metrics from the invoker and all workers. """ # Copyright 2021 The Funnel Rocket Maintainers # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in complian...
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import warnings from io import BytesIO from tempfile import NamedTemporaryFile import onnx import torch.nn from torch.nn import Module import torch.nn.functional as F from torchvision import models from numpy.testing import assert_almost_equal import numpy as np import tensorflow as tf from onnx2keras import onnx2ker...
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#!/usr/bin/env python # -*- coding: utf-8 -*- # # nnutil2 - Tensorflow utilities for training neural networks # Copyright (c) 2019, <NAME> <<EMAIL>> # # This file is part of 'nnutil2'. # # This file may be modified and distributed under the terms of the 3-clause BSD # license. See the LICENSE file for details. import...
[ "tensorflow.dtype.as_dtype", "tensorflow.sparse.to_dense", "tensorflow.nest.is_nested", "tensorflow.nest.map_structure", "numpy.array" ]
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#!/usr/bin/env python3.7 # # Copyright (c) University of Luxembourg 2021. # Created by <NAME>, <EMAIL>, SnT, 2021. # import argparse import numpy from utilities import print_new_test, is_int, cosine, euclidean, searchStringInFile parser = argparse.ArgumentParser() parser.add_argument('--name', type=str) parser.add_...
[ "utilities.searchStringInFile", "argparse.ArgumentParser", "utilities.cosine", "utilities.print_new_test", "numpy.array", "utilities.is_int" ]
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import numpy def permute_node(node, permutation_index, axis=-1): """Permute index of `node` array Args: node (numpy.ndarray): the array whose `axis` to be permuted. permutation_index (numpy.ndarray): 1d numpy array whose size should be same as permutation axis of `node`. a...
[ "numpy.zeros_like", "numpy.take" ]
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import cv2 import numpy as np from random import randint from scipy.optimize import least_squares from math import sqrt, atan2 def get_8_points(len_features): """ Function to get 8 indices of random points Implements the 8-point algorithm :param len_features: total no. of features retrieved from featu...
[ "math.atan2", "numpy.empty", "numpy.shape", "numpy.linalg.svd", "random.randint", "numpy.identity", "numpy.insert", "scipy.optimize.least_squares", "numpy.reshape", "numpy.linalg.det", "math.sqrt", "cv2.FlannBasedMatcher", "numpy.hstack", "numpy.squeeze", "numpy.dot", "numpy.vstack", ...
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import time import configparser import numpy as np import re class PowerSupplyCalib(object): def __init__(self, ps, vstart, vend, vstep, scan_speed=1.5): self.vstart = vstart self.vend = vend self.vstep = vstep self.scan_vals = np.arange(self.vstart, self.vend+(0.5*self.vstep), s...
[ "time.sleep", "configparser.ConfigParser", "numpy.arange", "re.compile" ]
[((268, 332), 'numpy.arange', 'np.arange', (['self.vstart', '(self.vend + 0.5 * self.vstep)', 'self.vstep'], {}), '(self.vstart, self.vend + 0.5 * self.vstep, self.vstep)\n', (277, 332), True, 'import numpy as np\n'), ((514, 548), 're.compile', 're.compile', (['"""address\\\\.([0-9]{3})"""'], {}), "('address\\\\.([0-9]...
import numpy as np import pickle import contrib_to_behavior import matplotlib import matplotlib.pyplot as plt import matplotlib.patches as mpatches from sklearn import svm matplotlib.rcParams['pdf.fonttype'] = 42 matplotlib.rcParams['ps.fonttype'] = 42 plt.rcParams["font.family"] = "arial" class neural_analysis: ...
[ "numpy.sum", "numpy.arctan2", "numpy.maximum", "numpy.argmax", "numpy.abs", "numpy.floor", "numpy.ones", "numpy.isnan", "numpy.argsort", "matplotlib.pyplot.figure", "numpy.mean", "numpy.arange", "numpy.sin", "sklearn.svm.SVC", "matplotlib.patches.Patch", "numpy.diag", "matplotlib.pyp...
[((54515, 54541), 'matplotlib.pyplot.figure', 'plt.figure', ([], {'figsize': '(8, 4)'}), '(figsize=(8, 4))\n', (54525, 54541), True, 'import matplotlib.pyplot as plt\n'), ((54549, 54571), 'numpy.arange', 'np.arange', (['(0)', '(2700)', 'dt'], {}), '(0, 2700, dt)\n', (54558, 54571), True, 'import numpy as np\n'), ((5568...
import unittest import numpy as np from trip_kinematics.Utility import Rotation as R class TestStates(unittest.TestCase): """Correct results were generated using scipy.spatial.transform.Rotation. """ def test_from_euler_to_quat(self): from_euler_cases = [ ([1, 2, 3], ...
[ "trip_kinematics.Utility.Rotation.from_matrix", "numpy.array", "trip_kinematics.Utility.Rotation.from_euler" ]
[((5515, 5730), 'numpy.array', 'np.array', (['[[0.41198224566568303, -0.8337376517741568, -0.3676304629248995], [-\n 0.058726644927620864, -0.4269176212762076, 0.902381585483331], [-\n 0.9092974268256819, -0.35017548837401474, -0.2248450953661529]]'], {}), '([[0.41198224566568303, -0.8337376517741568, -0.36763046...
import os os.environ['CUDA_VISIBLE_DEVICES'] = '1' import cv2 import glob import numpy as np from PIL import Image from core.utils import load_image, deprocess_image, preprocess_image from core.networks import unet_spp_large_swish_generator_model from core.dcp import estimate_transmission img_size = 51...
[ "core.utils.deprocess_image", "os.makedirs", "core.dcp.estimate_transmission", "os.path.basename", "cv2.cvtColor", "numpy.concatenate", "cv2.imwrite", "os.path.exists", "PIL.Image.open", "cv2.imread", "numpy.array", "numpy.reshape", "os.path.splitext", "core.networks.unet_spp_large_swish_g...
[((1240, 1278), 'core.networks.unet_spp_large_swish_generator_model', 'unet_spp_large_swish_generator_model', ([], {}), '()\n', (1276, 1278), False, 'from core.networks import unet_spp_large_swish_generator_model\n'), ((371, 411), 'cv2.resize', 'cv2.resize', (['cv_img', '(img_size, img_size)'], {}), '(cv_img, (img_size...
from OT.PSD import OT_PSD from basic.select import select_file from basic.filter import MA from matplotlib import rcParams rcParams["font.family"] = "sans-serif" rcParams["font.sans-serif"] = ["Arial"] rcParams.update({'font.size': 18}) import pandas as pd import numpy as np import random import math import matplotlib....
[ "matplotlib.pyplot.plot", "random.uniform", "matplotlib.rcParams.update", "numpy.isnan", "pandas.read_excel", "numpy.sort", "matplotlib.pyplot.figure", "numpy.append", "numpy.array", "numpy.argsort", "basic.filter.MA", "numpy.mean", "matplotlib.pyplot.subplots" ]
[((202, 236), 'matplotlib.rcParams.update', 'rcParams.update', (["{'font.size': 18}"], {}), "({'font.size': 18})\n", (217, 236), False, 'from matplotlib import rcParams\n'), ((1686, 1705), 'pandas.read_excel', 'pd.read_excel', (['path'], {}), '(path)\n', (1699, 1705), True, 'import pandas as pd\n'), ((2757, 2786), 'mat...
import copy import h5py import math import numpy as np import os import torch from torch.utils.data import Dataset import sys BASE_DIR = os.path.dirname(os.path.abspath(__file__)) ROOR_DIR = os.path.dirname(BASE_DIR) sys.path.append(ROOR_DIR) from utils import random_select_points, shift_point_cloud, jitter_point_cl...
[ "sys.path.append", "numpy.isin", "os.path.abspath", "h5py.File", "numpy.random.seed", "copy.deepcopy", "math.ceil", "os.path.dirname", "utils.generate_random_rotation_matrix", "utils.generate_random_tranlation_vector", "numpy.unique", "utils.jitter_point_cloud", "utils.shuffle_pc", "utils....
[((193, 218), 'os.path.dirname', 'os.path.dirname', (['BASE_DIR'], {}), '(BASE_DIR)\n', (208, 218), False, 'import os\n'), ((219, 244), 'sys.path.append', 'sys.path.append', (['ROOR_DIR'], {}), '(ROOR_DIR)\n', (234, 244), False, 'import sys\n'), ((155, 180), 'os.path.abspath', 'os.path.abspath', (['__file__'], {}), '(_...
from astropy.table import Table from astropy.io import fits from GPSTiming.interpolation import interpolate_boardtimes from numpy import diff def test_time_differences_greater_zero(path: str): fits_file = fits.open(path) table = Table(fits_file[1].data) fits_file.close() table = interpolate_boardtimes...
[ "numpy.diff", "astropy.table.Table", "astropy.io.fits.open", "GPSTiming.interpolation.interpolate_boardtimes" ]
[((211, 226), 'astropy.io.fits.open', 'fits.open', (['path'], {}), '(path)\n', (220, 226), False, 'from astropy.io import fits\n'), ((239, 263), 'astropy.table.Table', 'Table', (['fits_file[1].data'], {}), '(fits_file[1].data)\n', (244, 263), False, 'from astropy.table import Table\n'), ((298, 327), 'GPSTiming.interpol...
import matplotlib.pyplot as plt import matplotlib.cm as cm import numpy as np class TransitionPlot: N_COL = 8 OBJ_NAMES = ['BG', 'SQ', 'SC', 'BQ', 'BC', 'P1', 'P2', 'P3', 'P4'] def __init__(self, num_obj_slots): assert num_obj_slots in (4,8,9) self.COLORS = [cm.rainbow(x) for x in np.lins...
[ "numpy.ceil", "matplotlib.pyplot.close", "matplotlib.pyplot.subplot2grid", "matplotlib.pyplot.subplots", "matplotlib.cm.rainbow", "matplotlib.pyplot.pause", "numpy.linspace", "matplotlib.pyplot.tight_layout" ]
[((549, 587), 'matplotlib.pyplot.subplots', 'plt.subplots', ([], {'figsize': 'self.FIGURE_SIZE'}), '(figsize=self.FIGURE_SIZE)\n', (561, 587), True, 'import matplotlib.pyplot as plt\n'), ((2120, 2138), 'matplotlib.pyplot.tight_layout', 'plt.tight_layout', ([], {}), '()\n', (2136, 2138), True, 'import matplotlib.pyplot ...
import time import numpy as np import mxnet as mx import matplotlib.pyplot as plt from mxnet import nd from mxnet import autograd from mxnet import gluon from mxnet.gluon import nn def gpu_exists(): try: mx.nd.zeros((1, ), ctx=mx.gpu(0)) except: return False return True data_ctx = mx.cpu...
[ "matplotlib.pyplot.show", "mxnet.random.seed", "mxnet.test_utils.get_mnist", "numpy.reshape", "mxnet.cpu", "mxnet.gpu", "matplotlib.pyplot.subplots" ]
[((314, 322), 'mxnet.cpu', 'mx.cpu', ([], {}), '()\n', (320, 322), True, 'import mxnet as mx\n'), ((484, 501), 'mxnet.random.seed', 'mx.random.seed', (['(1)'], {}), '(1)\n', (498, 501), True, 'import mxnet as mx\n'), ((535, 560), 'mxnet.test_utils.get_mnist', 'mx.test_utils.get_mnist', ([], {}), '()\n', (558, 560), Tru...
#!/usr/bin/env python3 import os import sys import importlib import h5py import random import numpy as np from argparse import ArgumentParser def main(): args = parse_args() if not importlib.util.find_spec('chimeranet'): print('ChimeraNet is not installed, import from source.') sys.path.appen...
[ "chimeranet.models.ChimeraPPModel", "chimeranet.models.probe_model_shape", "h5py.File", "chimeranet.models.load_model", "argparse.ArgumentParser", "importlib.util.find_spec", "random.shuffle", "numpy.arange", "keras.callbacks.CSVLogger", "os.path.split", "numpy.random.shuffle" ]
[((3651, 3667), 'argparse.ArgumentParser', 'ArgumentParser', ([], {}), '()\n', (3665, 3667), False, 'from argparse import ArgumentParser\n'), ((192, 230), 'importlib.util.find_spec', 'importlib.util.find_spec', (['"""chimeranet"""'], {}), "('chimeranet')\n", (216, 230), False, 'import importlib\n'), ((794, 825), 'h5py....
import numpy as np import time from tscc.optimization.optimizescale import optimizescale # add constraints according to the a,b,c coefficients of quadratic function def computescale(a, b, c, iters, stateRobo, limitsRobo, weightSlack, guessScale, deltaT): nObst = len(a) for i in range(iters):...
[ "tscc.optimization.optimizescale.optimizescale", "numpy.sqrt" ]
[((2468, 2546), 'tscc.optimization.optimizescale.optimizescale', 'optimizescale', (['listLeft', 'listRight', 'stateRobo', 'limitsRobo', 'weightSlack', 'deltaT'], {}), '(listLeft, listRight, stateRobo, limitsRobo, weightSlack, deltaT)\n', (2481, 2546), False, 'from tscc.optimization.optimizescale import optimizescale\n'...
#!/usr/bin/env python """plots.py: plots utility functions.""" __author__ = "<NAME>." __copyright__ = "Copyright 2020, SuperDARN@VT" __credits__ = [] __license__ = "MIT" __version__ = "1.0" __maintainer__ = "<NAME>." __email__ = "<EMAIL>" __status__ = "Research" import os import sys sys.path.extend(["code/", "code/r...
[ "numpy.argmax", "numpy.ones", "numpy.argmin", "matplotlib.pyplot.figure", "pickle.load", "matplotlib.colors.LogNorm", "numpy.arange", "numpy.sin", "matplotlib.pyplot.imread", "matplotlib.pyplot.close", "sys.path.extend", "os.path.exists", "matplotlib.dates.DateFormatter", "numpy.max", "d...
[((287, 337), 'sys.path.extend', 'sys.path.extend', (["['code/', 'code/rt/', 'code/sd/']"], {}), "(['code/', 'code/rt/', 'code/sd/'])\n", (302, 337), False, 'import sys\n'), ((4759, 4784), 'pydarn.read_hdw_file', 'pydarn.read_hdw_file', (['rad'], {}), '(rad)\n', (4779, 4784), False, 'import pydarn\n'), ((5661, 5696), '...
#!/usr/bin/python3 # Tested with Python 3.8.6 #------------------------------------------------------------------------------ # runEmceeAfterglow.py #------------------------------------------------------------------------------ # Authors: <NAME>, <NAME> # Oregon State University #-----------------------------------...
[ "numpy.sum", "os.unlink", "numpy.abs", "numpy.empty", "time.strftime", "os.path.isfile", "os.path.islink", "numpy.mean", "shutil.rmtree", "numpy.random.randn", "emcee.backends.HDFBackend", "numpy.savetxt", "numpy.reshape", "os.rename", "multiprocessing.Pool", "os.listdir", "numpy.all...
[((1831, 1849), 'os.listdir', 'os.listdir', (['folder'], {}), '(folder)\n', (1841, 1849), False, 'import os\n'), ((2724, 2757), 'os.path.isfile', 'os.path.isfile', (['(folder + filename)'], {}), '(folder + filename)\n', (2738, 2757), False, 'import os\n'), ((3065, 3111), 'numpy.savetxt', 'np.savetxt', (['params_datafil...
#!/usr/bin/python """ """ # ---- import json import tempfile import itertools import subprocess import matplotlib.pyplot as plt import scipy.stats as stats from matplotlib.font_manager import FontProperties # ---- import numpy as np import pandas as pd import statsmodels.api as sm ## ------------------------...
[ "matplotlib.pyplot.title", "numpy.sum", "matplotlib.pyplot.bar", "matplotlib.pyplot.figure", "matplotlib.pyplot.axvline", "matplotlib.font_manager.FontProperties", "numpy.std", "numpy.max", "numpy.linspace", "matplotlib.pyplot.axhline", "numpy.average", "numpy.min", "matplotlib.pyplot.ylabel...
[((4652, 4680), 'matplotlib.pyplot.figure', 'plt.figure', ([], {'figsize': '[9, 4.8]'}), '(figsize=[9, 4.8])\n', (4662, 4680), True, 'import matplotlib.pyplot as plt\n'), ((4691, 4707), 'matplotlib.pyplot.subplot', 'plt.subplot', (['(111)'], {}), '(111)\n', (4702, 4707), True, 'import matplotlib.pyplot as plt\n'), ((48...
""" Regression Using Decision Tree, Random Tree, Bootstrap Aggregating, and Boosting. Copyright (c) 2020 <NAME> """ import numpy as np class RTLearner: def __init__(self, leaf=1, tol=1.0e-6): """ leaf Lowest number of leaves tol Tolerance to group close-valued leaves ...
[ "numpy.absolute", "numpy.empty", "numpy.random.randint", "numpy.array", "numpy.concatenate" ]
[((1001, 1020), 'numpy.absolute', 'np.absolute', (['(Y - Ym)'], {}), '(Y - Ym)\n', (1012, 1020), True, 'import numpy as np\n'), ((3122, 3133), 'numpy.empty', 'np.empty', (['n'], {}), '(n)\n', (3130, 3133), True, 'import numpy as np\n'), ((1076, 1100), 'numpy.array', 'np.array', (['[-1, Ym, 0, 0]'], {}), '([-1, Ym, 0, 0...
# -*- coding: utf-8 -*- """ Module summary description. More detailed description. """ import numpy as np import networkx as nx from math import sqrt as msqrt from numba import njit from shapely.errors import TopologicalError from shapely.geometry import MultiPolygon, GeometryCollection, Polygon, box, LineString, ...
[ "shapely.ops.unary_union", "numba.njit", "shapely.ops.transform", "numpy.argmin", "gistools.coordinates.r_tree_idx", "numpy.mean", "shapely.geometry.box", "shapely.geometry.Point", "shapely.geometry.Polygon", "shapely.geometry.LineString", "numpy.tan", "numpy.radians", "shapely.ops.cascaded_...
[((9332, 9338), 'numba.njit', 'njit', ([], {}), '()\n', (9336, 9338), False, 'from numba import njit\n'), ((29009, 29109), 'gistools.utils.check.type.type_assert', 'type_assert', ([], {'polygon1': '(Polygon, MultiPolygon)', 'polygon2': '(Polygon, MultiPolygon)', 'normalized': 'bool'}), '(polygon1=(Polygon, MultiPolygon...
#! /usr/bin/env python # -*- coding: utf-8 -*- import os import random import logging import datetime import numpy as np # padle import paddle logger = logging.getLogger(__name__) def get_logger(log_file=None):# {{{ """Set logger and return it. If the log_file is not None, log will be written into log_fil...
[ "numpy.random.seed", "logging.FileHandler", "logging.basicConfig", "os.makedirs", "os.path.exists", "datetime.datetime.now", "logging.Formatter", "numpy.argsort", "paddle.seed", "random.seed", "numpy.swapaxes", "os.path.join", "logging.getLogger" ]
[((155, 182), 'logging.getLogger', 'logging.getLogger', (['__name__'], {}), '(__name__)\n', (172, 182), False, 'import logging\n'), ((600, 724), 'logging.basicConfig', 'logging.basicConfig', ([], {'format': '"""%(asctime)s - %(levelname)s - %(message)s"""', 'datefmt': '"""%m/%d/%Y %H:%M:%S"""', 'level': 'logging.INFO'}...
import numpy as np from cloudvolume import CloudVolume from cloudvolume.lib import Bbox from cloudvolume.storage import Storage from chunkflow.chunk.validate import validate_by_template_matching from tinybrain import downsample_with_averaging from chunkflow.chunk import Chunk from .base import OperatorBase class Cut...
[ "chunkflow.chunk.validate.validate_by_template_matching", "numpy.transpose", "cloudvolume.lib.Bbox.from_slices", "cloudvolume.CloudVolume", "numpy.array", "numpy.alltrue", "numpy.squeeze", "cloudvolume.storage.Storage", "tinybrain.downsample_with_averaging", "chunkflow.chunk.Chunk", "chunkflow.c...
[((1446, 1627), 'cloudvolume.CloudVolume', 'CloudVolume', (['self.volume_path'], {'bounded': '(False)', 'fill_missing': 'self.fill_missing', 'progress': 'self.verbose', 'mip': 'self.mip', 'cache': '(False)', 'use_https': 'self.use_https', 'green_threads': '(True)'}), '(self.volume_path, bounded=False, fill_missing=self...
#!/usr/bin/python3 # -*- coding: utf-8 -*- import logging import matplotlib import multiprocessing as mp import numpy as np import os import sys # Fix problem: no $DISPLAY environment variable matplotlib.use('Agg') from argparse import ArgumentParser from datetime import datetime as dt from pprint import pprint from...
[ "numpy.random.seed", "argparse.ArgumentParser", "os.path.exists", "core.test.test_net", "multiprocessing.log_to_stderr", "matplotlib.use", "pprint.pprint", "core.train.train_net", "datetime.datetime.now", "sys.exit", "multiprocessing.get_logger" ]
[((194, 215), 'matplotlib.use', 'matplotlib.use', (['"""Agg"""'], {}), "('Agg')\n", (208, 215), False, 'import matplotlib\n'), ((452, 509), 'argparse.ArgumentParser', 'ArgumentParser', ([], {'description': '"""Parser of Runner of Pix2Vox"""'}), "(description='Parser of Runner of Pix2Vox')\n", (466, 509), False, 'from a...
# copyright (c) 2020 PaddlePaddle Authors. All Rights Reserve. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applic...
[ "numpy.transpose", "os.path.exists", "numpy.expand_dims", "time.time", "numpy.array", "transforms.det_transforms.Compose", "numpy.squeeze", "cv2.resize" ]
[((3044, 3071), 'transforms.det_transforms.Compose', 'transforms.Compose', (['op_list'], {}), '(op_list)\n', (3062, 3071), True, 'import transforms.det_transforms as transforms\n'), ((4717, 4728), 'time.time', 'time.time', ([], {}), '()\n', (4726, 4728), False, 'import time\n'), ((7190, 7211), 'numpy.squeeze', 'np.sque...
"""FFX.py v1.3 (Sept 16, 2011) This module implements the Fast Function Extraction (FFX) algorithm. Reference: <NAME>, FFX: Fast, Scalable, Deterministic Symbolic Regression Technology, Genetic Programming Theory and Practice IX, Edited by R. Riolo, <NAME>, and <NAME>, Springer, 2011. http://www.trent.st/ffx HOW TO...
[ "numpy.abs", "numpy.ones", "numpy.clip", "numpy.argsort", "numpy.mean", "numpy.arange", "numpy.isfinite", "numpy.reshape", "signal.alarm", "numpy.log10", "scipy.isinf", "math.sqrt", "numpy.asarray", "numpy.asfortranarray", "scipy.isnan", "functools.wraps", "numpy.dot", "signal.sign...
[((41297, 41318), 'numpy.argsort', 'numpy.argsort', (['cost0s'], {}), '(cost0s)\n', (41310, 41318), False, 'import numpy\n'), ((7638, 7665), 'numpy.zeros', 'numpy.zeros', (['N'], {'dtype': 'float'}), '(N, dtype=float)\n', (7649, 7665), False, 'import numpy\n'), ((7723, 7769), 'itertools.izip', 'itertools.izip', (['self...
""" DataContainer class for linking directories containing different sorts of data. This is meant to make plotting and analysis easier. TO DO ----- - request random subsets. - make sure input directories are iterable - add features to existing files. """ __date__ = "July-November 2019" import h5py try: from numba....
[ "os.remove", "ava.models.vae.VAE", "os.path.join", "ava.models.vae_dataset.get_syllable_partition", "torch.load", "os.path.exists", "numpy.max", "warnings.catch_warnings", "numpy.loadtxt", "h5py.File", "ava.models.vae_dataset.get_hdf5s_from_dir", "umap.UMAP", "numpy.min", "torch.cuda.is_av...
[((10192, 10309), 'warnings.warn', 'warnings.warn', (["('clean_projections will be deprecated in v0.3.0. ' +\n 'Use clear_projections instead.')", 'UserWarning'], {}), "('clean_projections will be deprecated in v0.3.0. ' +\n 'Use clear_projections instead.', UserWarning)\n", (10205, 10309), False, 'import warning...
import os import sys import logging as log import numpy as np import cv2 from openvino.inference_engine import IENetwork, IECore class ModelDetection: ''' Class for the Face Detection Model. ''' def __init__(self, model_name, device='CPU', extensions=None, threshold=0.5): self.threshold = thres...
[ "openvino.inference_engine.IENetwork", "openvino.inference_engine.IECore", "cv2.dnn.blobFromImage", "numpy.where", "numpy.array" ]
[((601, 609), 'openvino.inference_engine.IECore', 'IECore', ([], {}), '()\n', (607, 609), False, 'from openvino.inference_engine import IENetwork, IECore\n'), ((628, 673), 'openvino.inference_engine.IENetwork', 'IENetwork', ([], {'model': 'model_xml', 'weights': 'model_bin'}), '(model=model_xml, weights=model_bin)\n', ...
# Copyright 2017 Google Inc. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or ag...
[ "tensorflow.python.saved_model.loader.maybe_saved_model_directory", "base64.b64decode", "collections.defaultdict", "logging.critical", "os.path.join", "StringIO.StringIO", "logging.error", "json.loads", "tensorflow.python.client.session.Session", "importlib.import_module", "pydoc.locate", "num...
[((2882, 2948), 'collections.namedtuple', 'collections.namedtuple', (['"""PredictionErrorType"""', "('message', 'code')"], {}), "('PredictionErrorType', ('message', 'code'))\n", (2904, 2948), False, 'import collections\n'), ((7173, 7202), 'collections.defaultdict', 'collections.defaultdict', (['list'], {}), '(list)\n',...
#!/usr/bin/env python # -*- coding: utf-8 -*- # # Project: Fast Azimuthal integration # https://github.com/silx-kit/pyFAI # # Copyright (C) 2017-2020 European Synchrotron Radiation Facility, Grenoble, France # # Principal author: <NAME> (<EMAIL>) # # Permission is hereby granted, free of cha...
[ "json.loads", "pyFAI.utils.mathutil.expand2d", "numpy.zeros", "numpy.sin", "numpy.arange", "numpy.cos", "collections.OrderedDict", "logging.getLogger" ]
[((1690, 1717), 'logging.getLogger', 'logging.getLogger', (['__name__'], {}), '(__name__)\n', (1707, 1717), False, 'import logging\n'), ((2486, 2580), 'collections.OrderedDict', 'OrderedDict', (["(('pixel1', self._pixel1), ('pixel2', self._pixel2), ('radius', self.radius))"], {}), "((('pixel1', self._pixel1), ('pixel2'...
import h5py import math import os import numpy as np import torch import torch.optim as optim import torch.nn as nn from net import classifier from torchlight import torchlight def weights_init(m): classname = m.__class__.__name__ if classname.find('Conv1d') != -1: m.weight.data.normal_(0.0, 0.02) ...
[ "os.mkdir", "h5py.File", "numpy.moveaxis", "numpy.argmax", "os.path.isdir", "numpy.empty", "torch.load", "torch.nn.CrossEntropyLoss", "net.classifier.Classifier", "numpy.max", "numpy.mean", "numpy.array", "numpy.reshape", "torchlight.torchlight.IO", "torch.no_grad", "os.listdir", "nu...
[((953, 984), 'os.listdir', 'os.listdir', (['path_to_model_files'], {}), '(path_to_model_files)\n', (963, 984), False, 'import os\n'), ((1202, 1221), 'numpy.argmax', 'np.argmax', (['acc_list'], {}), '(acc_list)\n', (1211, 1221), True, 'import numpy as np\n'), ((1819, 1917), 'torchlight.torchlight.IO', 'torchlight.IO', ...
# Built in python libs from typing import List, Tuple, Any # Additional libs import numpy as np import cv2 from numba import jit, njit, prange # Custom imports # performs the ratio test on a set of matched keypoints # the ratio test filters matched keypoints out if they are greater than the minimum seperation betw...
[ "numpy.array", "numpy.float32", "numba.jit" ]
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import numpy from distutils.core import setup from Cython.Build import cythonize setup( name='features_labels', ext_modules=cythonize('features_labels.pyx', include_dirs=[numpy.get_include()]) )
[ "numpy.get_include" ]
[((180, 199), 'numpy.get_include', 'numpy.get_include', ([], {}), '()\n', (197, 199), False, 'import numpy\n')]
""" Script for extracting particles from membranes by looking for low pass filtering + non-maximum suppression Input: - Directory with the _imod.csv files with reference picked particles for each microsome - Directory with offsets for each microsome in a tomogram - Directory with the ...
[ "pyseg.globals.lin_map", "time.strftime", "numpy.argsort", "gc.collect", "pyseg.globals.vect_to_zrelion", "pyseg.sub.Star", "csv.DictWriter", "pyseg.sub.TomoPeaks", "os.path.exists", "pyseg.disperse_io.load_tomo", "pyorg.surf.points_to_poly", "math.ceil", "numpy.asarray", "scipy.ndimage.mo...
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import napari import os import shutil import squidpy as sq from ngff_tables_prototype.writer import write_spatial_anndata from ngff_tables_prototype.reader import load_to_napari_viewer import numpy as np output_fpath = "test_segment.zarr" def write_segmentation_adata() -> None: adata = sq.datasets.mibitof() ...
[ "os.path.isdir", "squidpy.datasets.mibitof", "numpy.swapaxes", "ngff_tables_prototype.reader.load_to_napari_viewer", "shutil.rmtree", "napari.run" ]
[((294, 315), 'squidpy.datasets.mibitof', 'sq.datasets.mibitof', ([], {}), '()\n', (313, 315), True, 'import squidpy as sq\n'), ((1163, 1267), 'ngff_tables_prototype.reader.load_to_napari_viewer', 'load_to_napari_viewer', ([], {'file_path': 'output_fpath', 'groups': "['labels/label_image', 'tables/regions_table']"}), "...
from __future__ import division import numpy as np #----------------------------- COSMOS galaxy bias (arXiv:1205.1064) ---------------------------------------- def bias_Amara(z, bias_type, zcutoff): y = z/(1+z) ycutoff = zcutoff/(1+zcutoff) #bias_type --> nn:fifth nearest neighbor or gs: gaussian smoothing if(bi...
[ "numpy.sqrt" ]
[((629, 643), 'numpy.sqrt', 'np.sqrt', (['(1 + z)'], {}), '(1 + z)\n', (636, 643), True, 'import numpy as np\n')]
import os import json from collections import OrderedDict import numpy as np import tensorflow as tf cur_path = os.path.realpath(__file__) ROOT_PATH = os.path.dirname(cur_path) # add any new ops under the following pose_to_heatmap_fn = tf.load_op_library( os.path.join(ROOT_PATH, 'pose_to_heatmap.so')).pose_to_heatm...
[ "tensorflow.maximum", "tensorflow.reshape", "numpy.ones", "tensorflow.greater_equal", "tensorflow.reduce_max", "tensorflow.greater", "os.path.join", "tensorflow.image.crop_to_bounding_box", "tensorflow.gather", "os.path.dirname", "tensorflow.variable_scope", "tensorflow.stack", "tensorflow.c...
[((113, 139), 'os.path.realpath', 'os.path.realpath', (['__file__'], {}), '(__file__)\n', (129, 139), False, 'import os\n'), ((152, 177), 'os.path.dirname', 'os.path.dirname', (['cur_path'], {}), '(cur_path)\n', (167, 177), False, 'import os\n'), ((1670, 1810), 'collections.OrderedDict', 'OrderedDict', (['[(9, 0), (8, ...
""" Authors: <NAME> Contact : https://adityajain.me """ import numpy as np class KNeighborsClassifier(): """ K Nearest Neighbors Classifier which classifies sample point based on majority of k nearby sample classes Parameters ---------- n_neighbors : integer (Default 5), number of neighbors to consider metri...
[ "numpy.abs", "numpy.square", "numpy.zeros", "numpy.expand_dims", "numpy.array", "numpy.unique" ]
[((2204, 2219), 'numpy.array', 'np.array', (['probs'], {}), '(probs)\n', (2212, 2219), True, 'import numpy as np\n'), ((1039, 1054), 'numpy.abs', 'np.abs', (['(X1 - X2)'], {}), '(X1 - X2)\n', (1045, 1054), True, 'import numpy as np\n'), ((1883, 1913), 'numpy.expand_dims', 'np.expand_dims', (['sample'], {'axis': '(0)'})...
"""TFRecords data-loader for audiovisual datasets.""" import functools from typing import Dict, Iterator, List, Optional, Text, Tuple, Union from absl import logging from dmvr import modalities as load_modalities from flax import jax_utils import jax import jax.numpy as jnp import ml_collections import numpy as np fro...
[ "numpy.pad", "functools.partial", "scenic.projects.mbt.datasets.dataset_utils.add_spectrogram", "scenic.dataset_lib.datasets.add_dataset", "dmvr.modalities.add_label", "numpy.ones", "scenic.dataset_lib.dataset_utils.distribute", "absl.logging.info", "jax.process_count", "tensorflow.data.Options", ...
[((15405, 15457), 'scenic.dataset_lib.datasets.add_dataset', 'datasets.add_dataset', (['"""audiovisual_tfrecord_dataset"""'], {}), "('audiovisual_tfrecord_dataset')\n", (15425, 15457), False, 'from scenic.dataset_lib import datasets\n'), ((1900, 1929), 'jax.tree_map', 'jax.tree_map', (['zero_pad', 'batch'], {}), '(zero...
# -*- coding: utf-8 -*- # File generated according to Generator/ClassesRef/Simulation/InputFlux.csv # WARNING! All changes made in this file will be lost! """Method code available at https://github.com/Eomys/pyleecan/tree/master/pyleecan/Methods/Simulation/InputFlux """ from os import linesep from sys import getsizeof...
[ "numpy.array_equal", "numpy.array", "sys.getsizeof" ]
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from __future__ import print_function, absolute_import import stimela import stimela.dismissable as sdm from pyrap.tables import table as tbl import os import sys import argparse import numpy as np from collections import OrderedDict import shutil import vermeerkat parser = argparse.ArgumentParser("MeerKAT BasicApply...
[ "stimela.dismissable.dismissable", "numpy.sum", "argparse.ArgumentParser", "shutil.rmtree", "vermeerkat.log.info", "os.path.isdir", "os.path.dirname", "os.path.exists", "stimela.register_globals", "os.environ.get", "numpy.max", "numpy.min", "collections.OrderedDict", "shutil.copytree", "...
[((277, 345), 'argparse.ArgumentParser', 'argparse.ArgumentParser', (['"""MeerKAT BasicApplyTransfer (BAT) pipeline"""'], {}), "('MeerKAT BasicApplyTransfer (BAT) pipeline')\n", (300, 345), False, 'import argparse\n'), ((8170, 8228), 'vermeerkat.log.info', 'vermeerkat.log.info', (['"""The following fields are available...
#! /usr/bin/python # -*- coding: utf-8 -*- """NAO tasks.""" import itertools import os import numpy as np import torch import torch.nn.functional as F from fairseq import utils from fairseq.data import ConcatDataset, NaoLanguagePairDataset from fairseq.data.nao_dataset import SingleTensorDataset from . import regi...
[ "numpy.load", "numpy.minimum", "numpy.maximum", "fairseq.data.ConcatDataset", "os.path.exists", "itertools.count", "numpy.any", "fairseq.data.NaoLanguagePairDataset.from_base_dataset", "torch.no_grad", "fairseq.data.NaoLanguagePairDataset", "torch.from_numpy" ]
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#! -*- coding: utf-8 -*- # 用GlobalPointer做中文命名实体识别 # 数据集 https://github.com/CLUEbenchmark/CLUENER2020 import json import numpy as np from snippets import * from bert4keras.backend import keras from bert4keras.backend import multilabel_categorical_crossentropy from bert4keras.layers import EfficientGlobalPointer as Glo...
[ "tqdm.tqdm", "json.loads", "bert4keras.backend.multilabel_categorical_crossentropy", "bert4keras.backend.keras.models.Model", "json.dumps", "bert4keras.snippets.open", "numpy.where", "bert4keras.layers.EfficientGlobalPointer", "bert4keras.snippets.sequence_padding" ]
[((3612, 3656), 'bert4keras.backend.keras.models.Model', 'keras.models.Model', (['base.model.input', 'output'], {}), '(base.model.input, output)\n', (3630, 3656), False, 'from bert4keras.backend import keras\n'), ((3455, 3580), 'bert4keras.layers.EfficientGlobalPointer', 'GlobalPointer', ([], {'heads': 'num_classes', '...
import pandas as pd import numpy as np import matplotlib.pyplot as plt import csv array=[['wrong_covid_normal','wrong_covid_pneu','correct_covid'], ['wrong_pneu_normal','correct_pneu','wrong_pneu_covid'], ['correct_normal','wrong_normal_pneu','wrong_normal_covid']] results={1:{},2:{},3:{},4:{},5:{}...
[ "numpy.array", "numpy.average", "matplotlib.pyplot.subplots" ]
[((2672, 2686), 'matplotlib.pyplot.subplots', 'plt.subplots', ([], {}), '()\n', (2684, 2686), True, 'import matplotlib.pyplot as plt\n'), ((5142, 5186), 'numpy.average', 'np.average', (["results['Full'][net][param][:-1]"], {}), "(results['Full'][net][param][:-1])\n", (5152, 5186), True, 'import numpy as np\n'), ((2711,...
# Python 3.7.6 # -*- coding: utf-8 -*- # Author: <NAME> import os import numpy as np import torch from torch.nn.utils.rnn import pad_sequence char_list = 'abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789' len_char_list = len(char_list) def pad_labels(): path = os.getcwd() ...
[ "numpy.load", "torch.LongTensor", "os.getcwd", "torch.save", "torch.nn.utils.rnn.pad_sequence", "torch.from_numpy" ]
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from copy import deepcopy import numpy as np import pickle as pkl import random from joblib import Parallel, delayed from tqdm.notebook import tqdm import colorednoise as cn import mne from time import time from . import util DEFAULT_SETTINGS = { 'number_of_sources': (1, 20), 'extents': (1, 50)...
[ "pickle.dump", "numpy.sum", "numpy.abs", "tqdm.notebook.tqdm", "numpy.clip", "numpy.mean", "numpy.arange", "numpy.sin", "numpy.std", "numpy.max", "numpy.swapaxes", "numpy.random.shuffle", "numpy.stack", "copy.deepcopy", "colorednoise.powerlaw_psd_gaussian", "numpy.zeros", "numpy.expa...
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# -*- coding: utf-8 -*- import numpy as np NUMPY_COMPLEX128_MAX = np.finfo(np.complex128).max NUMPY_LOG_COMPLEX128_MAX = np.log(NUMPY_COMPLEX128_MAX) class HestonModel: def __init__(self, forward, vol, kappa, theta, sigma, rho, rate): self.forward = forward self.vol = vol self.kappa = kapp...
[ "numpy.log", "numpy.finfo", "numpy.expm1", "numpy.sin", "numpy.exp", "numpy.cos", "numpy.cosh", "numpy.sinh", "numpy.log1p", "numpy.sqrt" ]
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import numpy as np import unittest from laika.gps_time import GPSTime from laika import AstroDog gps_times_list = [[1950, 415621.0], [1895, 455457.0], [1885, 443787.0]] svIds = ['G01', 'G31', 'R08'] gps_times = [GPSTime(*gps_time_list) for gps_time_list in gps_times_list] class TestAstroDog(unittest.TestCa...
[ "unittest.main", "numpy.testing.assert_allclose", "laika.AstroDog", "laika.gps_time.GPSTime" ]
[((223, 246), 'laika.gps_time.GPSTime', 'GPSTime', (['*gps_time_list'], {}), '(*gps_time_list)\n', (230, 246), False, 'from laika.gps_time import GPSTime\n'), ((1704, 1719), 'unittest.main', 'unittest.main', ([], {}), '()\n', (1717, 1719), False, 'import unittest\n'), ((1070, 1095), 'laika.AstroDog', 'AstroDog', ([], {...
import numpy as np a = np.array([1, 2, 3, 4, 5]) np.sum(a ** 2)
[ "numpy.array", "numpy.sum" ]
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# -*- coding: utf-8 -*- """ Created on Thu Dec 5 12:43:51 2019 @author: Blackr """ """Cyclic Voltammetry (CV) technique class. The CV technique returns data on fields (in order): * time (float) * Ec (float) * I (float) * Ewe (float) * cycle (int) """ ''' E_we ^ | E_1 ...
[ "bio_logic.CV", "numpy.transpose", "numpy.append", "numpy.array", "bio_logic.SP150" ]
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""" Matplotlib volumetric benchmarking plotting routines. """ #*************************************************************************************************** # Copyright 2015, 2019 National Technology & Engineering Solutions of Sandia, LLC (NTESS). # Under the terms of Contract DE-NA0003525 with NTESS, the U.S. Go...
[ "matplotlib.pyplot.title", "seaborn.set_style", "matplotlib.cm.get_cmap", "seaborn.despine", "numpy.isnan", "seaborn.color_palette", "matplotlib.pyplot.ylabel", "matplotlib.pyplot.xlabel", "matplotlib.pyplot.subplots", "matplotlib.colors.ListedColormap" ]
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import os import numpy as np opj = os.path.join from astropy.io import fits data_path = '../../data/cosmology' def downsample(parameter_file, root_dir, resize=64, nsamples=30000, ncosmo=10): ''' downsample cosmolgy image ''' print('preprocessing...') img_size = 256 params_ = np.loadtxt(para...
[ "numpy.stack", "numpy.random.randint", "astropy.io.fits.open", "numpy.loadtxt" ]
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#!/usr/bin/env python # -*- coding: utf-8 -*- """Core IO, DSP and utility functions.""" import os import six import audioread import numpy as np import scipy.signal import scipy.fftpack as fft import resampy from .time_frequency import frames_to_samples, time_to_samples from .. import cache from .. import util from ...
[ "numpy.abs", "resampy.filters.get_filter", "numpy.mean", "numpy.arange", "numpy.sqrt", "numpy.round", "resampy.resample", "six.callable", "numpy.ceil", "os.path.realpath", "audioread.audio_open", "scipy.fftpack.ifft", "scipy.fftpack.fft", "numpy.concatenate", "numpy.iscomplexobj", "num...
[((552, 593), 'resampy.filters.get_filter', 'resampy.filters.get_filter', (['"""kaiser_best"""'], {}), "('kaiser_best')\n", (578, 593), False, 'import resampy\n'), ((610, 651), 'resampy.filters.get_filter', 'resampy.filters.get_filter', (['"""kaiser_fast"""'], {}), "('kaiser_fast')\n", (636, 651), False, 'import resamp...
import tkinter as tk from collections import deque from tkinter.constants import BUTT, END, GROOVE, NW, RAISED, RIDGE, S, SUNKEN import numpy as np import cv2 from PIL import Image,ImageTk import os import face_recognition import time window =tk.Tk() window.option_add("*Font","Helvetica 14") window.geometr...
[ "numpy.argmin", "cv2.rectangle", "tkinter.Label", "collections.deque", "tkinter.Button", "cv2.imwrite", "os.path.dirname", "tkinter.Entry", "os.path.exists", "cv2.cvtColor", "face_recognition.face_encodings", "tkinter.Toplevel", "tkinter.Tk", "cv2.resize", "face_recognition.face_distance...
[((254, 261), 'tkinter.Tk', 'tk.Tk', ([], {}), '()\n', (259, 261), True, 'import tkinter as tk\n'), ((971, 1006), 'cv2.VideoCapture', 'cv2.VideoCapture', (['(0 + cv2.CAP_DSHOW)'], {}), '(0 + cv2.CAP_DSHOW)\n', (987, 1006), False, 'import cv2\n'), ((9862, 10013), 'tkinter.Button', 'tk.Button', ([], {'master': 'window', ...
import numpy as np import cv2 as cv import cmath #cap = cv.VideoCapture(0) cap = cv.VideoCapture('udpsrc port=5004 ! application/x-rtp,encoding-name=H264,payload=96 ! rtph264depay ! avdec_h264 ! videoconvert ! appsink', cv.CAP_GSTREAMER) PI = 3.14159 while(1): # read the video capture frame _, frame...
[ "cv2.minAreaRect", "cv2.GaussianBlur", "cv2.contourArea", "cv2.circle", "cv2.cvtColor", "cv2.waitKey", "cv2.threshold", "cv2.moments", "cv2.imshow", "cv2.fillPoly", "cv2.VideoCapture", "cv2.fitEllipse", "numpy.array", "cv2.rectangle", "cv2.drawContours", "cv2.destroyAllWindows", "cv2...
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import sys import sysconfig import warnings import numpy as nu import ctypes import ctypes.util from numpy.ctypeslib import ndpointer import os from galpy import potential from galpy.util import galpyWarning from galpy.orbit_src.integratePlanarOrbit import _parse_integrator, _parse_tol #Find and load the library _lib= ...
[ "numpy.ctypeslib.ndpointer", "ctypes.c_int", "ctypes.c_double", "galpy.orbit_src.integratePlanarOrbit._parse_tol", "ctypes.byref", "sysconfig.get_config_var", "numpy.asfortranarray", "numpy.require", "numpy.array", "warnings.warn", "galpy.orbit_src.integratePlanarOrbit._parse_integrator", "os....
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import numpy as np import pandas as pd from sklearn.preprocessing import LabelBinarizer from sklearn.model_selection import StratifiedKFold from sklearn.preprocessing import StandardScaler from joblib import parallel_backend from multiprocessing import cpu_count import os, gc, joblib from tqdm import tqdm from collec...
[ "sklearn.preprocessing.LabelBinarizer", "sklearn.preprocessing.StandardScaler", "collections.defaultdict", "gc.collect", "os.path.isfile", "numpy.sin", "joblib.parallel_backend", "pandas.set_option", "multiprocessing.cpu_count", "pandas.DataFrame", "numpy.nanmean", "numpy.linspace", "pandas....
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import tensorflow as tf import numpy as np def _tf_fspecial_gauss(size, sigma, ch=1): """Function to mimic the 'fspecial' gaussian MATLAB function """ x_data, y_data = np.mgrid[-size//2 + 1:size//2 + 1, -size//2 + 1:size//2 + 1] x_data = np.expand_dims(x_data, axis=-1) x_data = np.expand_dims(x_d...
[ "tensorflow.image.rgb_to_grayscale", "tensorflow.reduce_sum", "tensorflow.reduce_mean", "numpy.expand_dims", "tensorflow.constant", "tensorflow.tile", "tensorflow.nn.avg_pool", "tensorflow.exp", "tensorflow.nn.conv2d", "tensorflow.reduce_prod", "tensorflow.pack" ]
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import train_keras from keras.models import load_model import os import numpy as np import pandas as pd from tqdm import tqdm from keras.callbacks import ModelCheckpoint import sys TF_CPP_MIN_LOG_LEVEL=2 TEST_BATCH = 128 def load_params(): X_test = os.listdir('./test-jpg') X_test = [fn.replace('.jpg', '') for...
[ "keras.models.load_model", "numpy.save", "train_keras.load_image", "pandas.DataFrame.from_dict", "os.listdir", "numpy.concatenate" ]
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# -*- coding: utf-8 -*- # # BRAINS # (B)LR (R)everberation-mapping (A)nalysis (I)n AGNs with (N)ested (S)ampling # <NAME>, <EMAIL> # Thu, Aug 4, 2016 # import os import sys import corner import numpy as np import configparser as cp import matplotlib.pyplot as plt __all__ = ['plotbackend'] class plotbackend: """ ...
[ "os.path.isabs", "corner.corner", "matplotlib.pyplot.plot", "configparser.RawConfigParser", "numpy.min", "numpy.loadtxt", "matplotlib.pyplot.subplots" ]
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import sys import os import numpy as np import random from collections import OrderedDict import pickle import datetime from tqdm import tqdm from recordclass import recordclass import math import torch import torch.autograd as autograd import torch.nn as nn import torch.nn.functional as F import torch.optim as optim ...
[ "torch.nn.Dropout", "recordclass.recordclass", "pickle.dump", "os.mkdir", "numpy.random.seed", "random.shuffle", "torch.nn.Embedding", "torch.nn.MaxPool1d", "torch.nn.LSTMCell", "torch.cat", "torch.cuda.device_count", "torch.nn.NLLLoss", "pickle.load", "torch.no_grad", "os.path.join", ...
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import numpy as np import cv2 import matplotlib.pyplot as plt import matplotlib.image as mpimg import pickle class Line(): def __init__(self,n): self.n=n self.detected =False #Polynomial coefficients of the lines self.A=[] self.B=[] self.C=[] #Running average of coefficients sel...
[ "numpy.mean" ]
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# Copyright 2016 <NAME>, alexggmatthews # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in wr...
[ "tensorflow.Dimension", "tensorflow.add_n", "quadrature.hermgauss", "tensorflow.convert_to_tensor", "tensorflow.reshape", "tensorflow.TensorShape", "tensorflow.concat", "tensorflow.stack", "tensorflow.matmul", "tensorflow.shape", "tensorflow.sqrt", "tensorflow.rank", "numpy.sqrt" ]
[((1333, 1368), 'quadrature.hermgauss', 'hermgauss', (['num_gauss_hermite_points'], {}), '(num_gauss_hermite_points)\n', (1342, 1368), False, 'from quadrature import hermgauss\n'), ((1460, 1473), 'tensorflow.shape', 'tf.shape', (['Fmu'], {}), '(Fmu)\n', (1468, 1473), True, 'import tensorflow as tf\n'), ((2263, 2278), '...
# Copyright 2019 DeepMind Technologies Limited # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agr...
[ "pyspiel.load_game", "absl.testing.absltest.main", "numpy.ones", "pyspiel.load_matrix_game", "open_spiel.python.algorithms.double_oracle.DoubleOracleSolver" ]
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import numpy as np import torch from torch import nn import torch.nn.functional as F # open text file and read in data as `text` with open('data/anna.txt', 'r') as f: text = f.read() # print(text[:100]) # encode the text and map each character to an integer and vice versa # we create two dictionaries: # 1. int2...
[ "torch.nn.Dropout", "numpy.zeros_like", "numpy.multiply", "torch.load", "torch.nn.CrossEntropyLoss", "torch.nn.functional.softmax", "torch.save", "numpy.mean", "torch.cuda.is_available", "numpy.array", "numpy.arange", "torch.from_numpy" ]
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""" Dataset classes for variable number of speakers Author: <NAME> """ import numpy as np import torch import torch.utils.data as data from librosa import load from time import time import glob import os import random import json from tqdm import tqdm def load_json(filename): with open(filename) as f: data ...
[ "numpy.stack", "tqdm.tqdm", "json.load", "torch.utils.data.DataLoader", "time.time", "torch.Tensor", "random.seed", "librosa.load", "numpy.array", "os.path.join" ]
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import os from pathlib import Path import pytest from flopy.utils import binaryfile as bf import numpy as np import fiona import rasterio from shapely.geometry import box import pytest from ..grid import load_modelgrid from ..results import export_cell_budget, export_heads, export_drawdown, export_sfr_results @pytest...
[ "rasterio.open", "fiona.open", "numpy.isscalar", "os.path.getsize", "numpy.allclose", "pytest.fixture", "os.path.exists", "flopy.utils.binaryfile.HeadFile", "pathlib.Path", "os.path.splitext", "flopy.utils.binaryfile.CellBudgetFile", "pytest.mark.parametrize", "os.path.split", "os.path.joi...
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## Compiled from NodeLoads.ipynb on Sun Dec 10 12:51:11 2017 ## DO NOT EDIT THIS FILE. YOUR CHANGES WILL BE LOST!! ## In [1]: import numpy as np from salib import extend ## In [9]: class NodeLoad(object): def __init__(self,fx=0.,fy=0.,mz=0.): if np.isscalar(fx): self.forces = np.matrix([f...
[ "numpy.isscalar", "numpy.matrix", "numpy.array" ]
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import os filename = 'seg-0_0_0.npz' outputdir = os.getcwd() + os.sep + 'inferred_segmentation' inputdir = os.getcwd() import numpy as np import h5py import PIL import PIL.Image import cv2 import png def save_tif8(id_data, filename): cv2.imwrite(filename, id_data.astype('uint8')) def save_tifc(id_data, fil...
[ "os.getcwd", "numpy.load", "numpy.save", "png.Writer" ]
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""" A. Long-term future prediction (model rollout) 1. encoder-decoder (0, 1 -> 8192-dim latent -> 2', 3'): - feed (2', 3') images as input to predict (4', 5') images ... 2. encoder-decoder-64 (0, 1 -> 64-dim latent -> 2', 3'): - feed (2', 3') images as input to predict (4', 5') images ... 3. encoder-decoder-6...
[ "pytorch_lightning.seed_everything", "numpy.array_equal", "torch.cat", "yaml.safe_load", "pprint.pprint", "shutil.rmtree", "os.path.join", "models.VisDynamicsModel", "torch.load", "os.path.exists", "torchvision.transforms.ToPILImage", "json.dump", "tqdm.tqdm", "munch.munchify", "torch.ma...
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from keras.utils import Sequence import os import signal import psutil import gc import pandas as pd import numpy as np import random import math import pysam from ..util import * import threading import pickle import pdb def kill_child_processes(parent_pid, sig=signal.SIGTERM): try: parent = psutil.Proce...
[ "psutil.Process", "os.getpid", "pandas.read_hdf", "numpy.concatenate", "math.ceil", "pandas.read_csv", "pysam.FastaFile", "numpy.zeros", "numpy.expand_dims", "threading.Lock", "numpy.arange", "numpy.tile", "numpy.random.shuffle", "gc.unfreeze" ]
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''' This script executes 2D FFT convolution on images in grayscale. Usage: Run without argument will use builtin Lena image: python fftconvolve.py Or, specify an image to use python fftconvolve.py myimage.jpg python fftconvolve.py myimage.png = Getting The Requirements = For Conda user, run the foll...
[ "matplotlib.pyplot.title", "matplotlib.pyplot.subplot", "numpy.zeros_like", "numba.cuda.stream", "matplotlib.pyplot.show", "timeit.default_timer", "accelerate.cuda.fft.FFTPlan", "matplotlib.pyplot.imshow", "scipy.misc.face", "matplotlib.pyplot.axis", "numba.cuda.to_device", "numba.cuda.pinned"...
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""" Contains class that runs inferencing """ import torch import numpy as np from networks.RecursiveUNet import UNet from utils.utils import med_reshape import torch.nn.functional as F class UNetInferenceAgent: """ Stores model and parameters and some methods to handle inferencing """ def __init__(sel...
[ "utils.utils.med_reshape", "torch.load", "torch.nn.functional.softmax", "numpy.max", "networks.RecursiveUNet.UNet", "torch.no_grad", "torch.from_numpy" ]
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# Copyright 2020 The Magenta Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in ...
[ "os.remove", "numpy.abs", "tempfile.mkstemp", "alignment_pb2.AlignmentTask", "librosa.core.cqt", "absl.logging.debug", "numpy.median", "numpy.interp", "absl.logging.info", "numpy.max", "librosa.power_to_db", "os.close", "numpy.array", "numpy.mean", "numpy.min", "librosa.midi_to_hz", ...
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# -*- coding: utf-8 -*- """ Created on Sun Dec 8 22:37:00 2019 @author: for_y """ import numpy as np from AnnoDomini.hamilton_mc import HMC, describe import sys import os sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))) def test_hmc(): def norm_function(x): var = 1 ...
[ "AnnoDomini.hamilton_mc.HMC", "numpy.log", "os.path.dirname", "numpy.isnan", "numpy.exp" ]
[((457, 565), 'AnnoDomini.hamilton_mc.HMC', 'HMC', ([], {'target_pdf': 'norm_function', 'burn_in': '(0)', 'thinning': '(1)', 'chain_len': '(100)', 'q_init': '[start_point]', 'epsilon': '(0.05)'}), '(target_pdf=norm_function, burn_in=0, thinning=1, chain_len=100, q_init=\n [start_point], epsilon=0.05)\n', (460, 565),...
import librosa from utils.hparams import Hparams from jamo import hangul_to_jamo from tqdm import tqdm import numpy as np import os, glob, json, shutil, torch, torchaudio hparams = Hparams() class KSSDatasetPath(): def __init__(self, Hparams): self.Hparams = Hparams # Origina...
[ "numpy.abs", "numpy.maximum", "librosa.filters.mel", "librosa.istft", "librosa.resample", "shutil.rmtree", "os.path.join", "torch.nn.functional.pad", "utils.hparams.Hparams", "numpy.power", "librosa.core.griffinlim", "torch.load", "torch.Tensor", "librosa.effects.trim", "librosa.stft", ...
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#!/usr/bin/env python # -*- coding: utf-8 -*- # pylint: disable=wrong-import-position """ Generate a json file summarizing a CLSim table """ from __future__ import absolute_import, division, print_function __all__ = [ 'summarize_clsim_table', 'parse_args', 'main' ] __author__ = '<NAME>' __license__ = ''...
[ "argparse.ArgumentParser", "os.path.isfile", "numpy.mean", "os.path.join", "retro.utils.misc.mkdir", "sys.path.append", "os.path.abspath", "pisa.utils.jsons.from_json", "os.path.dirname", "numpy.max", "numpy.ma.median", "retro.utils.misc.wstderr", "os.path.basename", "pisa.utils.jsons.to_j...
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