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""" Source code for osm_clipper Copyright (C) 2020 <NAME>. All versions released under the MIT license. """ import os import numpy import pandas import pygeos import geopandas import urllib.request import zipfile from tqdm import tqdm from multiprocessing import Pool,cpu_count from shapely.geometry i...
[ "pygeos.geometry.get_geometry", "os.makedirs", "pygeos.simplify", "os.path.exists", "tqdm.tqdm.pandas", "pygeos.area", "pygeos.to_wkb", "multiprocessing.cpu_count", "pygeos.geometry.get_type_id", "geopandas.GeoDataFrame", "pygeos.from_shapely", "numpy.array", "pygeos.geometry.get_num_geometr...
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import os import argparse import json import onnx import psutil import numpy """ This profiler tool could run a transformer model and print out the kernel time spent on each Node of the model. Example of profiling of longformer model: python profiler.py --model longformer-base-4096_fp32.onnx --batch_size 1 --sequen...
[ "json.load", "argparse.ArgumentParser", "psutil.cpu_count", "numpy.zeros", "numpy.ones", "benchmark_helper.setup_logger", "bert_test_data.generate_test_data", "bert_test_data.get_bert_inputs", "onnx.load", "benchmark_helper.create_onnxruntime_session" ]
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#!/usr/bin/python # # Copyright 2017 Google Inc. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or a...
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import numpy as np from abc import ABC, abstractmethod from aos.state import State class Metric(ABC): """ A class to represent a metric of the optical state. Eventually will have non-trivial image quality metrics ... """ @abstractmethod def evaluate(self, x): """ Evaluates the ...
[ "numpy.sum" ]
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from lxml import html as lh import requests import pandas as pd from datetime import datetime import matplotlib.pyplot as plt import numpy as np from io import StringIO from scipy import optimize from scipy.optimize import curve_fit # define your function: def gauss_func(x, height, mu, sigma): return height * np.exp...
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import numpy as np from copy import deepcopy from model.root.root_algo import RootAlgo class BaseGA(RootAlgo): """ Link: https://blog.sicara.com/getting-started-genetic-algorithms-python-tutorial-81ffa1dd72f9 https://www.tutorialspoint.com/genetic_algorithms/genetic_algorithms_quick_guide.htm ...
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from __future__ import absolute_import import os import numpy as np import tensorflow as tf from experiments.scripts.pickle_wrapper import save_pkl, load_pkl from .ops import simple_linear, select_action_tf, clipped_error from .alpha_vector import AlphaVector from .base_tf_solver import BaseTFSolver class LinearAlpha...
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import kwplot import numpy as np import kwimage kwplot.autompl() f = 8 blank_key = np.zeros((64 * f, 54 * f, 3)) blank_key[:, :, :] = np.array(kwimage.Color('darkgray').as255())[None, None, :] blank_key[0:f * 2, :] = (3, 3, 3) blank_key[-f * 2:, :] = (3, 3, 3) blank_key[:, 0:f * 2] = (3, 3, 3) blank_key[:, -f * 2:] = ...
[ "kwplot.imshow", "kwplot.autompl", "numpy.zeros", "kwimage.Color", "kwimage.stack_images" ]
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from __future__ import division, print_function from glob import glob from sklearn import svm, cross_validation import numpy as np import plot_utils as pu import json import sys import fitsio import pickle import os class Artifact(object): def __init__(self, identifier, expname, ccd, problem, x, y): s...
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from math import log import operator import numpy as np """ 从文件读入数据,返回一个二维数组 参数:filename 文件路径 """ def data_input(filename): r_train = open(filename,'r') data = r_train.readlines() data_x = [] for line in data: line = line.strip('\n').split(' ') data_x.append(line) ret...
[ "math.log", "numpy.mean", "operator.itemgetter" ]
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# %% # Imports from BoundaryConditions.Simulation.SimulationData import getSimData from GenericModel.Design import _addAgents, _loadBuildingData from SystemComponentsFast import simulate, Building, Cell import pandas as pd import numpy as np from PostProcesing import plots import logging # %% # Configure logging FORMA...
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import json import numpy as np from tqdm import tqdm from pathlib import Path, PosixPath from multiprocessing import Pool from librosa.feature.spectral import _spectrogram from librosa.feature import tempogram, fourier_tempogram, melspectrogram, tonnetz from librosa.feature import mfcc, chroma_stft, chroma_cqt, chroma_...
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""" Tests for structural time series models Author: <NAME> License: Simplified-BSD """ import warnings import numpy as np from numpy.testing import assert_equal, assert_allclose, assert_raises import pandas as pd import pytest from statsmodels.datasets import macrodata from statsmodels.tools.sm_exceptions import Sp...
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import torch import numpy as np from torch.autograd import Variable import torch.optim as optim import argparse import random import os import models import torchvision.utils as vutils import utils import nyuDataLoader as dataLoader_nyu import dataLoader as dataLoader_ours import torch.nn as nn from torch.utils.data im...
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# Licensed under a 3-clause BSD style license - see LICENSE.rst import pickle import numpy as np from astropy.time import Time class TestPickle: """Basic pickle test of time""" def test_pickle(self): times = ['1999-01-01 00:00:00.123456789', '2010-01-01 00:00:00'] t1 = Time(times, scale='u...
[ "pickle.loads", "astropy.time.Time", "numpy.all", "pickle.dumps" ]
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# -*- coding: utf-8 -*- # # Copyright (c) 2020, the cclib development team # # This file is part of cclib (http://cclib.github.io) and is distributed under # the terms of the BSD 3-Clause License. import unittest import numpy as np from cclib.bridge import cclib2pyscf from cclib.parser.utils import find_package cl...
[ "unittest.main", "cclib.bridge.cclib2pyscf.makepyscf", "numpy.array", "cclib.parser.utils.find_package" ]
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"""DimensionHelper module Contains a bunch of helper classes mostly used in the array.ScaledArray type. The goal of the ScaledArray type is to be able to access a data array using floating point indexes instead of integer indexes. The idea behind this is that the data array represent a section of space. For example ...
[ "numpy.array", "nephelae.types.Bounds", "numpy.linspace" ]
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import numpy as np import scipy.sparse as sp def calc_A_norm_hat(edge_index, weights=None): if weights is None: weights = np.ones(edge_index.shape[1]) sparse_adj = sp.coo_matrix((weights, (edge_index[0], edge_index[1]))) nnodes = sparse_adj.shape[0] A = sparse_adj + sp.eye(nnodes) D_vec = n...
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import cv2 import numpy as np import imutils from ar_overlay_2d import AR2D # read in images to be used for query and overlay query_image = cv2.imread('images/crossword_query.png') ar_image = cv2.imread('images/smash_box_art.png') # init ar 2d overlay ar2d = AR2D(query_image, ar_image, min_match_count=200) # open we...
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# -*- coding: utf-8 -*- import numpy as np import matplotlib as mpl import matplotlib.pyplot as plt from mpl_toolkits.mplot3d import Axes3D mpl.rcParams['font.sans-serif'] = ['SimHei'] # 指定默认字体 mpl.rcParams['axes.unicode_minus'] = False # 解决保存图像是负号'-'显示为方块的问题 np.random.seed(19260817) def d2(): # x轴采样点 x = ...
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import numpy as np import warnings warnings.filterwarnings("ignore") from pathlib import Path from argparse import ArgumentParser, ArgumentDefaultsHelpFormatter from scipy.io import wavfile import pyworld as pw from scipy import signal from util.utility import separate_speaker, get_separated_values from LSTMLM.LSTMLM_g...
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# Licensed under a 3-clause BSD style license - see LICENSE.rst import numpy as np import pytest import pickle import os from .. import Quat, normalize def indices(t): import itertools for k in itertools.product(*[range(i) for i in t]): yield k def normalize_angles(x, xmin, xmax): while np.any(...
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import numpy as np import os import scipy import numpy as np import matplotlib.pyplot as plt import matplotlib.image as mpimg from PIL import Image from scipy.misc import imresize def gauss2D(shape=(3, 3),sigma=0.5): m, n = [(ss-1.)/2. for ss in shape] y, x = np.ogrid[-m:m+1,-n:n+1] h = np.exp(-(x*x + y*y) ...
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# -*- coding: utf-8 -*- """ORCHSET Dataset Loader Orchset is intended to be used as a dataset for the development and evaluation of melody extraction algorithms. This collection contains 64 audio excerpts focused on symphonic music with their corresponding annotation of the melody. For more details, please visit: htt...
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# Dieses Skript versucht die TDOA im Zeitbereich mit CSOM zu bestimmen # Variation der Mikrofonabstände sowie Sampling Frequenz 96kHz # Imports import sys import math import numpy as np sys.path.append("..\\..\\simulation") sys.path.append("..\\..\\libraries") from GeometryLibrary import calculateMicrophoneArray_2 fr...
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# %% from multiprocessing.sharedctypes import Value import os from torch.utils.data import DataLoader from dataloaders.csv_data_loader import CSVDataLoader from dotenv import load_dotenv import numpy as np from torchvision import transforms load_dotenv() DATA_FOLDER_PATH = os.getenv("DATA_FOLDER_PATH") def get_norm...
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# =========================================================================== # heightmap.py ------------------------------------------------------------ # =========================================================================== # import ------------------------------------------------------------------ # -----...
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from pip import main import pygame import cv2 from matplotlib import pyplot as plt import numpy as np def get_bkgr(): image = cv2.imread("frame1.jpg") mask = cv2.imread("mask.jpg") grayImage = cv2.cvtColor(mask, cv2.COLOR_BGR2GRAY) (thresh, blackAndWhiteImage) = cv2.threshold(grayImage, 127, 255, cv2....
[ "cv2.bitwise_and", "pygame.event.get", "pygame.display.update", "matplotlib.pyplot.figure", "cv2.cvtColor", "cv2.imwrite", "pygame.display.set_mode", "matplotlib.pyplot.imshow", "pygame.quit", "cv2.circle", "matplotlib.pyplot.show", "pygame.time.Clock", "cv2.add", "pygame.display.init", ...
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import pandas as pd import numpy as np from sklearn.datasets import dump_svmlight_file from sklearn.feature_extraction.text import TfidfVectorizer, CountVectorizer from skmultilearn.model_selection import iterative_train_test_split import json import sklearn import pickle DATASET_PATH = "dataset/dataset_sampl...
[ "sklearn.datasets.dump_svmlight_file", "json.dump", "numpy.load", "numpy.save", "skmultilearn.model_selection.iterative_train_test_split", "sklearn.feature_extraction.text.CountVectorizer", "pandas.read_csv", "sklearn.feature_extraction.text.TfidfVectorizer", "numpy.nonzero", "numpy.all" ]
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"""Contains a class representing a Vindinium map.""" import numpy as np __all__ = ['Map'] class Map(object): """Represents static elements in the game. Elements comprise walls, paths, taverns, mines and spawn points. Attributes: size (int): the board size (in a single axis). """ def __...
[ "numpy.array" ]
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#!/usr/bin/env python # -*- coding: utf-8 -*- # @Author : xds # @wechat : 551883614 # @file: show_the_path.py # @time: 2019-03-06 11:48:11 # @Software: PyCharm import numpy as np import math # 输入旋转后的终点,中间得到一个转换矩阵,输出一个新的矩阵 def rotation_matrix(end_point): """ Return the rotation matrix associated with count...
[ "math.atan2", "numpy.asarray", "math.sin", "numpy.array", "math.cos", "numpy.dot" ]
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import numpy as np import cv2, time, multiprocessing import matplotlib.pyplot as plt def transform(x, y, orgX, orgY): c = complex(x - orgX, y - orgY) return c ** 1.2 const = np.array([256, 256, 256], np.int16) def toMatrix(newDict): global const arrs = newDict.keys() xRange = max(arrs, key=lambd...
[ "matplotlib.pyplot.title", "matplotlib.pyplot.subplot", "matplotlib.pyplot.show", "numpy.zeros", "time.clock", "cv2.imread", "numpy.array", "multiprocessing.Pool" ]
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import unittest from numpy import array from lda import VariationalBayes from scipy.special import psi as digam from math import exp class TestVB(unittest.TestCase): def setUp(self): self.init_beta = array([[.26, .185, .185, .185, .185], [.185, .185, .26, .185, .185], ...
[ "unittest.main", "numpy.array", "lda.VariationalBayes" ]
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import math import cv2 import numpy as np import tensorflow as tf import matplotlib.pyplot as plt from tensorflow.keras.datasets import mnist def load_img(path): img = cv2.imread(path, cv2.IMREAD_GRAYSCALE) return img def preprocess_img(img, size, invert_colors=False): if invert_colors: img = cv2...
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""" Data helper functions """ import os import random import numpy as np import PIL from tensorflow.keras.preprocessing.image import load_img, img_to_array from tensorflow.keras.utils import to_categorical def load_data(directory, classes, rescale=True, preprocess=None, verbose=False): """ Helper function to load...
[ "tensorflow.keras.utils.to_categorical", "numpy.empty", "tensorflow.keras.preprocessing.image.img_to_array", "os.path.exists", "os.path.join", "os.listdir" ]
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""" GPMF A Generalized Poroelastic Model using FEniCS Code for a fully-coupled poroelastic formulation: This solves the three PDEs (conservation of mass, darcy's law, conservation of momentum) using a Mixed Finite Element approach (i.e. a monolithic solve). The linear model uses a constant fluid density and porosity...
[ "time.gmtime", "numpy.abs", "numpy.round" ]
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""" General purpose math functions, mostly geometric in nature. """ import math import numpy as np from numpy.linalg import norm from scipy.linalg import svd from aspire.utils.random import Random def cart2pol(x, y): """ Convert Cartesian to Polar Coordinates. All input arguments must be the same shape. ...
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# -*- coding: utf-8 -*- #Mixture of gaussians #In this examples, the 1d case will be shown # -*- coding: utf-8 -*- # ============================================================================= # Here we will be testing with mixtures of student-t, 1d # ===============================================================...
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import numpy as np import pandas as pd import matplotlib.pyplot as plt import copy # models and dataset import from sklearn import tree, svm from sklearn.neural_network import MLPClassifier from sklearn.multiclass import OneVsRestClassifier from sklearn.linear_model import LogisticRegression from sklearn.ensemble impor...
[ "pyfolding.FTU", "sklearn.model_selection.train_test_split", "sklearn.tree.DecisionTreeClassifier", "sklearn.neural_network.MLPClassifier", "sklearn.svm.SVC", "matplotlib.pyplot.close", "sklearn.cluster.KMeans", "growingspheres.utils.gs_utils.distances", "numpy.append", "sklearn.neighbors.NearestN...
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import numpy as np import cv2 # convert a hexadecimal color to a BGR color array def hex2bgr(h): b = h & 0xFF g = (h >> 8) & 0xFF r = (h >> 16) & 0xFF return np.array([b, g, r]) # predefined colors in BGR MAROON = hex2bgr(0x800000) RED = hex2bgr(0xFF0000) ORANGE = hex2bgr(0xFFA500) YELLOW = hex...
[ "cv2.cvtColor", "numpy.array" ]
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import itertools from tempfile import NamedTemporaryFile import matplotlib import matplotlib.pyplot as plt import numpy as np from bokeh.plotting import figure, output_file def get_validation_plot(true_value, prediction): output_file(NamedTemporaryFile().name) x_min = min(min(true_value), min(prediction)) ...
[ "matplotlib.pyplot.title", "tempfile.NamedTemporaryFile", "numpy.trace", "bokeh.plotting.figure", "numpy.sum", "matplotlib.pyplot.get_cmap", "matplotlib.pyplot.imshow", "matplotlib.rcParams.update", "matplotlib.pyplot.yticks", "matplotlib.pyplot.colorbar", "matplotlib.pyplot.figure", "matplotl...
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#!/usr/bin/env python import sys import numpy as np from netCDF4 import Dataset with Dataset(sys.argv[1]) as nc1, Dataset(sys.argv[2]) as nc2: if nc1.variables.keys()!=nc2.variables.keys(): print("Variables are different") sys.exit(1) for varname in nc1.variables.keys(): diff = nc2[varname][:]-nc1[va...
[ "netCDF4.Dataset", "numpy.abs", "sys.exit" ]
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""" Functions to prepare the data for pciSeq. The label image and spots are parsed and if a spot lies within the cell boundaries then the corresponding cell id is recorded. Cell centroids and cell areas are also calculated. """ import os import shutil import numpy as np import pandas as pd import skimage.measure as sk...
[ "pandas.DataFrame", "numpy.asarray", "os.path.realpath", "logging.getLogger", "scipy.sparse.coo_matrix", "scipy.sparse.csr_matrix", "numpy.arange", "numpy.array", "numpy.random.shuffle" ]
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import numpy import PIL.Image import torch.utils.data import torchvision import conf.config import dataset.bak_dataset_utils class VOCDataset(torch.utils.data.Dataset): def __init__(self, config: dict, root: str, image_set: str, train: bool = True) -> None: super().__init__() self.config = conf...
[ "numpy.asarray", "torchvision.datasets.VOCDetection" ]
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# to build the phylogeny: # - andi *.fasta > ecoli.distances # - python bin/fix_andi_names.py accession_list < ../results/ecoli.distances > ../results/ecoli.distances.fixed # turns andi prefixes into genome names # - python bin/draw_phylogeny.py ../results/ecoli_matrix_2.map [full.path.to]/ecoli.distances.fixed ../res...
[ "numpy.linspace", "matplotlib.pyplot.figure", "numpy.vstack" ]
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"""Module containing the decoders.""" import numpy as np import torch import torch.nn as nn import pdb class DecoderBurgess(nn.Module): def __init__(self, img_size, latent_dim=10): r"""Decoder of the model proposed in [1]. Parameters ---------- img_size : tuple o...
[ "torch.nn.ConvTranspose2d", "torch.randn_like", "torch.exp", "numpy.product", "torch.nn.Linear" ]
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# -*- coding: utf-8 -*- from __future__ import unicode_literals import numpy as np import sklearn.neighbors as sn import matplotlib.pyplot as mp train_x, train_y = [], [] with open('../../data/knn.txt', 'r') as f: for line in f.readlines(): data = [float(substr) for substr in line.split(',')...
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""" Original code based on Kaggle competition Modified to take 3-channel input """ from __future__ import division import numpy as np from keras.models import Model from keras.layers import Input, merge, Convolution2D, MaxPooling2D, UpSampling2D, Cropping2D, AveragePooling2D from keras import backend as K...
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import matplotlib matplotlib.use("agg") import matplotlib.pyplot as plt import sys sys.path.insert(0, ".") import os, argparse import numpy as np from lib.fid import fid_score """ parser = argparse.ArgumentParser() parser.add_argument("--type", default=0, type=int, help="The path to pytorch inceptionv3 weight. You can...
[ "numpy.load", "matplotlib.pyplot.plot", "matplotlib.pyplot.close", "matplotlib.pyplot.legend", "sys.path.insert", "matplotlib.use", "lib.fid.fid_score.calculate_frechet_distance", "matplotlib.pyplot.savefig" ]
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import numpy as np # NumPy introduces a simple file format for ndarray objects. This .npy file stores data, shape, dtype and other information required to reconstruct the ndarray in a disk file such that the array is correctly retrieved even if the file is on another machine with different architecture. a = np.arra...
[ "numpy.load", "numpy.save", "numpy.savetxt", "numpy.array", "numpy.loadtxt" ]
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#!/usr/bin/env python import numpy as np import matplotlib.pyplot as plt import matplotlib import fitsio import treecorr import ngmix import os import errno from esutil import htm # import lfunc # Can use for debugging import pudb def mag_flux_tick_function(flux): return ["%.1f" % mag for mag in 30 - 2.5*np.log1...
[ "matplotlib.pyplot.title", "treecorr.GGCorrelation", "os.remove", "pdb.post_mortem", "ngmix.shape.g1g2_to_e1e2", "numpy.abs", "treecorr.Catalog", "fitsio.read", "numpy.histogram", "numpy.arange", "numpy.exp", "sys.exc_info", "os.path.join", "traceback.print_exc", "matplotlib.pyplot.close...
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# reference implementation of HIGGS training import argparse import os # import pandas as pd import torch import torch.nn as nn import torch.optim as optim import torchvision.transforms as transforms from torch.utils.data import DataLoader, random_split from tqdm import tqdm # for reproducibility inits import random...
[ "tqdm.tqdm", "numpy.random.seed", "argparse.ArgumentParser", "torch.utils.data.DataLoader", "torch.nn.BCELoss", "torch.manual_seed", "torch.cuda.manual_seed", "numpy.zeros", "torch.cuda.manual_seed_all", "random.seed", "torch.cuda.is_available", "torch.initial_seed", "torch.nn.Linear", "os...
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############################################################################### # # Source object color: https://www.pyimagesearch.com/2016/02/15/determining-object-color-with-opencv/ # # June 28, 2018 # ############################################################################### # import the necessary packages...
[ "scipy.spatial.distance.euclidean", "cv2.erode", "cv2.cvtColor", "numpy.zeros", "collections.OrderedDict", "cv2.drawContours", "cv2.mean" ]
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# coding=utf-8 # Copyright Huawei Noah's Ark Lab. # Copyright 2017 The TensorFlow Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/l...
[ "tensorflow.maximum", "numpy.iinfo", "tensorflow.string_split", "tensorflow.contrib.data.group_by_window", "tensorflow.size", "tensorflow.less", "tensorflow.pad", "tensorflow.TensorShape", "tensorflow.less_equal", "tensorflow.concat", "tensorflow.reverse", "tensorflow.constant", "noahnmt.dat...
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""" eval auc curve pred score in npy ground true in mat """ import os import matplotlib.pyplot as plt import numpy as np from sklearn.metrics import roc_auc_score,roc_curve,auc from net.utils.parser import load_config,parse_args import net.utils.logging_tool as logging from sklearn import metrics from net.utils.load_g...
[ "matplotlib.pyplot.title", "matplotlib.pyplot.bar", "os.path.join", "os.path.exists", "net.utils.parser.load_config", "matplotlib.pyplot.cla", "net.utils.logging_tool.get_logger", "matplotlib.pyplot.subplots", "matplotlib.pyplot.show", "net.utils.logging_tool.setup_logging", "matplotlib.pyplot.y...
[((387, 415), 'net.utils.logging_tool.get_logger', 'logging.get_logger', (['__name__'], {}), '(__name__)\n', (405, 415), True, 'import net.utils.logging_tool as logging\n'), ((554, 581), 'numpy.expand_dims', 'np.expand_dims', (['fpr'], {'axis': '(1)'}), '(fpr, axis=1)\n', (568, 581), True, 'import numpy as np\n'), ((58...
import numpy as np class WordEmbeddings(object): def __init__(self, size=300, n_words=10000): self.size = size self.n_words = n_words width = 0.5 / self.size self.embeddings = np.random.uniform(min=-width, max=width, size=(n_words, size))
[ "numpy.random.uniform" ]
[((215, 277), 'numpy.random.uniform', 'np.random.uniform', ([], {'min': '(-width)', 'max': 'width', 'size': '(n_words, size)'}), '(min=-width, max=width, size=(n_words, size))\n', (232, 277), True, 'import numpy as np\n')]
import os import json import numpy as np from scipy import sparse from scipy.sparse import csr_matrix try: import tensorflow as tf except ModuleNotFoundError: tf = None class Backend: def __init__(self, dirname): self.dirname = dirname def save(self, obj): # store obj raise No...
[ "json.dump", "json.load", "numpy.vectorize", "tensorflow.train.import_meta_graph", "scipy.sparse.load_npz", "tensorflow.get_collection", "os.path.exists", "tensorflow.Session", "numpy.array", "scipy.sparse.save_npz", "tensorflow.Graph", "os.path.join" ]
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import os, sys sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))) import open3d as o3d os.environ['PYOPENGL_PLATFORM'] = 'osmesa' # os.environ['PYOPENGL_PLATFORM'] = 'egl' # os.environ['EGL_DEVICE_ID'] = os.environ['SLURM_STEP_GPUS'] import numpy as np import time from tqdm import tqdm i...
[ "os.remove", "argparse.ArgumentParser", "open3d.visualization.draw_geometries", "pyrender.Mesh.from_trimesh", "os.path.join", "numpy.zeros_like", "os.path.dirname", "os.path.exists", "utils.image_proc.backproject_depth", "traceback.format_exc", "utils.pcd_utils.rotate_around_axis", "NPMs._C.co...
[((1025, 1130), 'numpy.array', 'np.array', (['[[1.0, 0.0, 0.0, 0.0], [0.0, -1.0, 0.0, 0.0], [0.0, 0.0, -1.0, 0.0], [0.0, \n 0.0, 0.0, 1.0]]'], {}), '([[1.0, 0.0, 0.0, 0.0], [0.0, -1.0, 0.0, 0.0], [0.0, 0.0, -1.0, 0.0\n ], [0.0, 0.0, 0.0, 1.0]])\n', (1033, 1130), True, 'import numpy as np\n'), ((1169, 1232), 'nump...
import argparse import tensorflow as tf import numpy as np from tfbldr.datasets import fetch_mnist from collections import namedtuple import sys import matplotlib matplotlib.use("Agg") import matplotlib.pyplot as plt import copy parser = argparse.ArgumentParser() parser.add_argument('direct_model', nargs=1, default=N...
[ "numpy.load", "numpy.zeros_like", "copy.deepcopy", "argparse.ArgumentParser", "tensorflow.train.import_meta_graph", "tensorflow.get_collection", "tensorflow.Session", "numpy.random.RandomState", "tensorflow.ConfigProto", "matplotlib.use", "numpy.array", "collections.namedtuple", "numpy.savez...
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''' Hyperspectral Instrument Data Resemblance Algorithm - A simple modular Python simulator for low-resolution spectroscopy Made by <NAME>, as a part of the thesis work. 2020 ''' import numpy as np import matplotlib.pyplot as plt import input_file as inp import HIDRA import scipy.signal import random def rms(x): ...
[ "numpy.load", "HIDRA.setup", "HIDRA.transmission_spec_func", "matplotlib.pyplot.plot", "HIDRA.sinusoidal", "HIDRA.prep_func", "numpy.zeros", "numpy.mean", "random.randrange", "numpy.random.normal", "scipy.interpolate.interp1d", "HIDRA.spatial_dispersion", "datetime.datetime.now", "numpy.sq...
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import chainer import chainer.functions as F import chainer.links as L from chainer import training from chainer.training import extensions import numpy as np import random # 前処理 # 書き方はこれを参考にした:https://github.com/yasunorikudo/chainer-DenseNet class Preprocess(chainer.dataset.DatasetMixin): def __init_...
[ "chainer.iterators.SerialIterator", "chainer.training.extensions.LogReport", "chainer.links.Linear", "random.randint", "chainer.initializers.GlorotNormal", "chainer.training.extensions.Evaluator", "chainer.functions.average_pooling_2d", "chainer.Sequential", "chainer.training.StandardUpdater", "ch...
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#!/usr/bin/env python import numpy as np from ropy.robot.ETS import ETS from pathlib import Path class PandaURDF(ETS): def __init__(self): fpath = Path('ropy') / 'models' / 'xacro' / 'panda' / 'robots' fname = 'panda_arm_hand.urdf.xacro' abspath = fpath.absolute() args = super(...
[ "pathlib.Path", "numpy.array" ]
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# from @有一种悲伤叫颓废 """ 注: 1. 主要用来求三角剖分和维诺图,算法的思路可以看我的这期视频:https://www.bilibili.com/video/BV1Ck4y1z7VT 2. 时间复杂度O(nlogn),一般情况应该够用,如发现bug请联系颓废 3. 只需导入两个函数:DelaunayTrianglation(求德劳内三角剖分), Voronoi(求维诺图) """ import numpy as np from manimlib.mobject.types.vectorized_mobject import VGroup from manimlib...
[ "manimlib.utils.space_ops.normalize", "numpy.random.seed", "manimlib.utils.config_ops.digest_config", "manimlib.mobject.types.vectorized_mobject.VGroup", "manimlib.mobject.geometry.Polygon", "numpy.linalg.det", "numpy.array", "numpy.exp", "numpy.random.randint", "numpy.dot", "manimlib.mobject.ge...
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############################################################################## # # Copyright (c) 2003-2018 by The University of Queensland # http://www.uq.edu.au # # Primary Business: Queensland, Australia # Licensed under the Apache License, version 2.0 # http://www.apache.org/licenses/LICENSE-2.0 # # Development unt...
[ "esys.escript.pdetools.TFQMR", "numpy.size", "esys.escript.pdetools.Projector", "esys.escript.pdetools.GMRES", "numpy.zeros", "numpy.ones", "esys.escript.pdetools.MINRES", "esys.escript.pdetools.NoPDE", "esys.escript.pdetools.PCG", "numpy.array", "numpy.dot", "esys.escript.pdetools.TimeIntegra...
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from .pondering import proximity_ponderation,outlier_ponderation from .fitting import fit import numpy as np import matplotlib.pyplot as plt def plot(points,res=256): #plots each point with it's ponderation, and the function fig, ax1 = plt.subplots() points= np.array(points) xpoints= points[:,0] ...
[ "matplotlib.pyplot.show", "numpy.amin", "numpy.amax", "numpy.array", "matplotlib.pyplot.subplots" ]
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import torch import torch.nn as nn from torch.autograd import Variable import torch.nn.functional as F from convgru import ConvGRUCell from gen_models import make_conv_net, make_fc_net, make_upconv_net import rlkit.torch.pytorch_util as ptu import numpy as np from numpy import pi from numpy import log as np_log log_...
[ "numpy.log", "torch.nn.Conv2d", "gen_models.make_conv_net", "gen_models.make_upconv_net", "torch.sigmoid", "torch.clamp", "gen_models.make_fc_net", "torch.exp", "torch.nn.Linear", "torch.sum" ]
[((326, 340), 'numpy.log', 'np_log', (['(2 * pi)'], {}), '(2 * pi)\n', (332, 340), True, 'from numpy import log as np_log\n'), ((698, 758), 'gen_models.make_conv_net', 'make_conv_net', (['in_ch', 'in_h', "encoder_specs['conv_part_specs']"], {}), "(in_ch, in_h, encoder_specs['conv_part_specs'])\n", (711, 758), False, 'f...
import tensorflow as tf import numpy as np import cv2 import os import argparse parser = argparse.ArgumentParser(description='Shade Sketches') parser.add_argument('--image-size', type=int, default=320, help='input image size (default: 320)') parser.add_argument('--direction', type=str, default='810...
[ "os.makedirs", "argparse.ArgumentParser", "os.walk", "os.path.exists", "numpy.expand_dims", "tensorflow.compat.v1.Session", "cv2.imread", "numpy.reshape", "tensorflow.Graph", "numpy.squeeze", "tensorflow.import_graph_def", "tensorflow.compat.v1.GraphDef", "os.path.join", "cv2.resize", "t...
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""" MIT License Copyright (c) 2018 <NAME> and <NAME> Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publ...
[ "numpy.maximum", "numpy.argmax", "scipy.sparse.issparse", "pyRipser.doRipsFiltrationDMCycles", "numpy.ones", "numpy.isnan", "numpy.arange", "sklearn.metrics.pairwise.pairwise_distances", "numpy.max", "scipy.sparse.coo_matrix", "pyRipser.doRipsFiltrationDM", "numpy.minimum", "numpy.ones_like"...
[((1676, 1955), 'scipy.spatial.distance.squareform', 'squareform', (['[1.0, 1.0, 1.41421356, 1.41421356, 1.0, 1.0, 1.0, 1.41421356, 1.41421356, \n 1.73205081, 1.41421356, 1.0, 1.73205081, 1.41421356, 1.0, 1.41421356, \n 1.73205081, 1.0, 1.41421356, 1.0, 1.41421356, 1.73205081, 1.41421356, \n 1.41421356, 1.0, 1...
import warnings warnings.filterwarnings('ignore') import CONFIG import DataLoader import engine import NERCRFModel import os import sys import pickle import torch import torch.nn as nn import pandas as pd import numpy as np from sklearn.preprocessing import LabelEncoder def run(): df = pd.read_csv('input/ner_d...
[ "torch.utils.data.sampler.SubsetRandomSampler", "DataLoader.DataLoader", "warnings.filterwarnings", "pandas.read_csv", "os.path.exists", "engine.train", "sklearn.preprocessing.LabelEncoder", "torch.save", "engine.eval", "numpy.arange", "torch.cuda.is_available", "DataLoader.MyCollate", "torc...
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#Main program for Project 1 - Algorithms class import tkinter as tk from tkinter import * import csv import time import sys import pandas as pd import numpy as np import subprocess #Application class definition (Tk frame for graphics.) class Application(tk.Frame): #Initialization of the class and subsequently GUI. ...
[ "tkinter.Spinbox", "csv.reader", "tkinter.Button", "time.time", "numpy.array", "tkinter.Label", "tkinter.Tk" ]
[((10819, 10826), 'tkinter.Tk', 'tk.Tk', ([], {}), '()\n', (10824, 10826), True, 'import tkinter as tk\n'), ((1262, 1276), 'tkinter.Label', 'tk.Label', (['self'], {}), '(self)\n', (1270, 1276), True, 'import tkinter as tk\n'), ((1595, 1609), 'tkinter.Label', 'tk.Label', (['self'], {}), '(self)\n', (1603, 1609), True, '...
from __future__ import print_function import gc from timeit import default_timer import matplotlib.pyplot as plt from numpy import log2 from funcstructs.structures import * from funcstructs.combinat import productrange from funcstructs.prototypes.integer_partitions import fixed_lex_partitions class Stopwatch(objec...
[ "matplotlib.pyplot.show", "gc.disable", "matplotlib.pyplot.plot", "numpy.log2", "matplotlib.pyplot.legend", "funcstructs.prototypes.integer_partitions.fixed_lex_partitions", "matplotlib.pyplot.figure", "matplotlib.pyplot.xlabel", "gc.enable" ]
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import numpy as np import cv2 from cv_utils import add_text ## Convert COCO keypoints to PoseTrack keypoints def conver_coco_poseTrack(kps): """ input: N, 17, 3 kp_names = [0:'nose', 1:'l_eye', 2:'r_eye', 3:'l_ear', 4:'r_ear', 5:'l_shoulder', 6:'r_shoulder', 7:'l_elbow'...
[ "numpy.zeros", "cv2.rectangle" ]
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from numpy import array def scigrid_2011_01_04_20(): ppc = {"version": '2'} ppc["baseMVA"] = 100.0 ppc["bus"] = array([ [586, 3, 0, 0, 0, 0, 0, 1.0, 0, 220.0, 0, 1.1, 0.9 ], [589, 2, 0, 0, 0, 0, 0, 1.0, 0, 380.0, 0, 1.1, 0.9 ], [590, 2, 0, 0, 0, 0, 0, 1.0, 0, 380.0, 0, 1.1,...
[ "numpy.array" ]
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# -*- coding: utf-8 -*- """ Created on Fri Jun 12 14:20:34 2020 @author: sixingliu, yaruchen """ import pandas as pd import numpy as np #from pandas.core.indexes.numeric import (NumericIndex, Float64Index, # noqa # Int64Index, UInt64Index) #from pandas.core.indexes.datetimes import ...
[ "pandas.api.extensions.register_dataframe_accessor", "pandas.api.extensions.register_series_accessor", "numpy.array" ]
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import smtplib import datetime import numpy as np import pandas as pd from email.mime.text import MIMEText from yahoo_fin import stock_info as si from pandas_datareader import DataReader from email.mime.multipart import MIMEMultipart from bs4 import BeautifulSoup from urllib.request import urlopen, Request from nltk.se...
[ "pandas_datareader.DataReader", "urllib.request.Request", "email.mime.text.MIMEText", "selenium.webdriver.find_element_by_class_name", "pandas.DataFrame", "selenium.webdriver.find_elements_by_class_name", "smtplib.SMTP", "urllib.request.urlopen", "email.mime.multipart.MIMEMultipart", "datetime.tim...
[((797, 806), 'selenium.webdriver.chrome.options.Options', 'Options', ([], {}), '()\n', (804, 806), False, 'from selenium.webdriver.chrome.options import Options\n'), ((854, 909), 'selenium.webdriver.Chrome', 'webdriver.Chrome', ([], {'executable_path': 'path', 'options': 'options'}), '(executable_path=path, options=op...
""" Quick and dirty script to compute shape tensor of a FITS image. :author: <NAME> :contact: <EMAIL> :version: 0.1 """ import numpy as np import pyfits as pf import glob as g def computeShapeTensor(data): """ Computes a shape tensor from 2D imaging array. :Warning: This function has been adapted from ...
[ "numpy.sqrt", "numpy.sum", "pyfits.getdata", "glob.glob" ]
[((1296, 1312), 'glob.glob', 'g.glob', (['"""*.fits"""'], {}), "('*.fits')\n", (1302, 1312), True, 'import glob as g\n'), ((1387, 1403), 'pyfits.getdata', 'pf.getdata', (['file'], {}), '(file)\n', (1397, 1403), True, 'import pyfits as pf\n'), ((1008, 1051), 'numpy.sqrt', 'np.sqrt', (['((Qxx - Qyy) ** 2 + 4.0 * Qxy * Qx...
## @ingroup Methods-Aerodynamics-Common-Fidelity_Zero-Lift # generate_propeller_wake_distribution.py # # Created: Sep 2020, <NAME> # Modified: May 2021, <NAME> # Jul 2021, <NAME> # Jul 2021, <NAME> # Sep 2021, <NAME> # ------------------------------------------------------------------...
[ "numpy.dot", "SUAVE.Core.Data", "numpy.zeros", "SUAVE.Methods.Aerodynamics.Common.Fidelity_Zero.Lift.compute_wake_contraction_matrix.compute_wake_contraction_matrix", "numpy.sqrt", "numpy.append", "numpy.sin", "numpy.arange", "numpy.reshape", "numpy.linspace", "numpy.cos", "numpy.take", "SUA...
[((17107, 17141), 'numpy.reshape', 'np.reshape', (['Wmid.WD_XA1', 'mat6_size'], {}), '(Wmid.WD_XA1, mat6_size)\n', (17117, 17141), True, 'import numpy as np\n'), ((17158, 17192), 'numpy.reshape', 'np.reshape', (['Wmid.WD_YA1', 'mat6_size'], {}), '(Wmid.WD_YA1, mat6_size)\n', (17168, 17192), True, 'import numpy as np\n'...
import logging import numpy, random, time, json, copy import numpy as np import os.path as osp import torch import torch.nn.functional as F import torch.optim as optim from torch.utils.data import DataLoader, Subset from cords.utils.data.data_utils import WeightedSubset from cords.utils.models import WideResNet, ShakeN...
[ "numpy.random.seed", "torch.cat", "cords.selectionstrategies.helpers.ssl_lib.algs.builder.gen_ssl_alg", "logging.Formatter", "torch.no_grad", "os.path.join", "cords.utils.models.CNN13", "cords.utils.config_utils.load_config_data", "torch.utils.data.DataLoader", "cords.utils.models.CNN", "torch.m...
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from copy import copy import numpy as np import pytest import aesara from aesara import tensor as at from aesara.scan.utils import ScanArgs @pytest.fixture(scope="module", autouse=True) def set_aesara_flags(): with aesara.config.change_flags(cxx="", mode="FAST_COMPILE"): yield def create_test_hmm(): ...
[ "aesara.scan.utils.ScanArgs.from_node", "aesara.tensor.iscalar", "aesara.tensor.random.normal", "numpy.random.SeedSequence", "pytest.fixture", "aesara.shared", "aesara.scan", "copy.copy", "numpy.random.default_rng", "pytest.raises", "aesara.tensor.random.categorical", "aesara.scan.utils.ScanAr...
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import numpy as np import matplotlib.pyplot as plt from matplotlib.ticker import MultipleLocator, ScalarFormatter from .specutils import Spectrum1D def plot_spectrum(spec, wlmin=None, wlmax=None, ax=None, dxmaj=None, dxmin=None, dymaj=None, dymin=None, fillcolor="#cccccc",fillalpha...
[ "numpy.repeat", "matplotlib.ticker.MultipleLocator", "matplotlib.pyplot.subplots", "numpy.concatenate", "matplotlib.ticker.ScalarFormatter" ]
[((1580, 1608), 'numpy.repeat', 'np.repeat', (['(x[1:] - x[:-1])', '(2)'], {}), '(x[1:] - x[:-1], 2)\n', (1589, 1608), True, 'import numpy as np\n'), ((1623, 1671), 'numpy.concatenate', 'np.concatenate', (['([xstep[0]], xstep, [xstep[-1]])'], {}), '(([xstep[0]], xstep, [xstep[-1]]))\n', (1637, 1671), True, 'import nump...
# py-motmetrics - Metrics for multiple object tracker (MOT) benchmarking. # https://github.com/cheind/py-motmetrics/ # # MIT License # Copyright (c) 2017-2020 <NAME>, <NAME> and others. # See LICENSE file for terms. """Accumulate tracking events frame by frame.""" from __future__ import absolute_import from __future_...
[ "numpy.zeros_like", "pandas.MultiIndex.from_arrays", "numpy.asarray", "motmetrics.lap.linear_sum_assignment", "numpy.isfinite", "itertools.count", "numpy.isnan", "numpy.where", "numpy.arange", "pandas.Series", "pandas.Categorical", "pandas.MultiIndex", "pandas.concat", "numpy.unique", "n...
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from os import system import threading import pandas as pd import numpy as np import matplotlib.pyplot as plt from datetime import datetime as dt import time def extract_data(pid): system("top -H -p "+pid+" -d 0.5 -b >> migrations.txt") def get_hops(tid): top_thread = open("migrations.txt") thread_data ...
[ "pandas.DataFrame", "threading.Thread", "os.system", "time.sleep", "numpy.array" ]
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import os import io import time import multiprocessing as mp from queue import Empty from PIL import Image from http import server import socketserver import numpy as np import cv2 import urllib.request Ncams = 1 streamsVideo = ('http://192.168.0.20:8000', 'http://192.168.0.20:8000', 'http://192.168.0....
[ "numpy.zeros", "http.server.serve_forever", "time.time", "cv2.VideoCapture", "time.sleep", "cv2.rectangle", "cv2.imencode", "numpy.array", "multiprocessing.Queue", "cv2.VideoWriter", "multiprocessing.Event", "multiprocessing.Process", "cv2.resize" ]
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# -*- coding: utf-8 -*- # @Author: <NAME> # @Email: <EMAIL> # @Date: 2019-06-27 13:59:02 # @Last Modified by: <NAME> # @Last Modified time: 2020-08-08 16:23:59 import os from sys import getsizeof import json import pickle import re import numpy as np from scipy.interpolate import interp1d from ..utils import isWi...
[ "numpy.moveaxis", "json.load", "pickle.dump", "numpy.asarray", "os.path.isfile", "pickle.load", "numpy.array", "sys.getsizeof", "numpy.interp", "scipy.interpolate.interp1d", "re.compile" ]
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import matplotlib.pyplot as plt from matplotlib.patches import RegularPolygon from matplotlib.collections import PatchCollection from pkg_resources import resource_filename import numpy as np def load_pixel_coordinates(): filename = resource_filename('iceact', 'resources/pixel_coordinates.txt') x, y = np.genf...
[ "matplotlib.patches.RegularPolygon", "numpy.genfromtxt", "pkg_resources.resource_filename", "matplotlib.pyplot.gca", "matplotlib.collections.PatchCollection" ]
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"""Implement boundary and interior discretization on regular Fourier grid.""" import numpy as np from src.grid import Grid from scipy.sparse import vstack as sparse_vstack def space_points(bdry_x, bdry_y, dx): """Space points equally on boundary with distance approximately dx.""" m = 8192 k = np.arange(m+...
[ "numpy.zeros_like", "numpy.sum", "scipy.sparse.vstack", "numpy.arange", "numpy.linalg.norm", "numpy.vstack" ]
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from __future__ import division import numpy as np import torch.nn as nn from mmcv.cnn import normal_init from mmdet.core import (AnchorGenerator, anchor_target_plus, delta2bbox, force_fp32, multi_apply, multiclass_nms) from ..builder import build_loss from ..registry import HEADS from ..utils import Co...
[ "torch.nn.ReLU", "mmdet.core.anchor_target_plus", "numpy.ceil", "torch.nn.ModuleList", "torch.nn.Conv2d", "mmdet.core.AnchorGenerator", "mmdet.core.force_fp32", "mmdet.core.delta2bbox", "mmcv.cnn.normal_init", "mmdet.core.multiclass_nms", "mmdet.core.multi_apply" ]
[((7508, 7557), 'mmdet.core.force_fp32', 'force_fp32', ([], {'apply_to': "('cls_scores', 'bbox_preds')"}), "(apply_to=('cls_scores', 'bbox_preds'))\n", (7518, 7557), False, 'from mmdet.core import AnchorGenerator, anchor_target_plus, delta2bbox, force_fp32, multi_apply, multiclass_nms\n'), ((9172, 9221), 'mmdet.core.fo...
#!/usr/bin/python """A setuptools-based script for distributing and installing mcd.""" # Copyright 2014, 2015, 2016, 2017 <NAME> # This file is part of mcd. # See `License` for details of license and warranty. import os import numpy as np from setuptools import setup from setuptools.extension import Extension from s...
[ "setuptools.command.sdist.sdist.run", "numpy.get_include", "os.path.exists", "os.path.join" ]
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# Copyright 2013 Viewfinder Inc. All Rights Reserved. """Run analysis over all merged user analytics logs. Computes speed percentiles for full asset scans (only those lasting more than 1s for more accurate numbers). Automatically finds the list of merged logs in S3. If --start_date=YYYY-MM-DD is specified, only anal...
[ "viewfinder.backend.storage.object_store.ObjectStore.GetInstance", "collections.defaultdict", "sys.exc_info", "viewfinder.backend.base.util.TimestampUTCToISO8601", "os.path.join", "viewfinder.backend.base.dotdict.DotDict", "logging.error", "json.loads", "logging.warning", "collections.Counter", ...
[((1614, 1735), 'tornado.options.define', 'options.define', (['"""start_date"""'], {'default': 'None', 'help': '"""Start date (filename start key). May be overridden by smart_scan."""'}), "('start_date', default=None, help=\n 'Start date (filename start key). May be overridden by smart_scan.')\n", (1628, 1735), Fals...
""" SPDX-License-Identifier: Apache-2.0 Copyright (C) 2021, Arm Limited and contributors Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless requ...
[ "numpy.sum", "numpy.abs", "numpy.argmax", "numpy.histogram", "numpy.mean", "six.iteritems", "six.moves.range", "numpy.std", "numpy.equal", "numpy.max", "numpy.stack", "numpy.square", "numpy.min", "scipy.special.softmax", "numpy.digitize", "sys.exit", "numpy.quantile", "numpy.log", ...
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import os import sys sys.path.insert(0, os.path.abspath('./src/')) def make_test_rgb(saveflag=True, filename='./test/test_image.tif'): """ generate known RGB pixel array and output TIFF file :param saveflag: flag to save output TIFF file, default True :param filename: path and filename of saved TFF t...
[ "preprocess.nan_upper_bound", "preprocess.nan_yellow_pixels", "os.path.abspath", "os.remove", "numpy.empty", "preprocess.read_tiff", "preprocess.extract_hist", "numpy.zeros", "numpy.allclose", "numpy.ones", "numpy.isnan", "numpy.isfinite", "PIL.Image.fromarray", "preprocess.rgb_histogram",...
[((40, 65), 'os.path.abspath', 'os.path.abspath', (['"""./src/"""'], {}), "('./src/')\n", (55, 65), False, 'import os\n'), ((444, 479), 'numpy.zeros', 'np.zeros', (['(h, w, 3)'], {'dtype': 'np.uint8'}), '((h, w, 3), dtype=np.uint8)\n', (452, 479), True, 'import numpy as np\n'), ((989, 1017), 'preprocess.read_tiff', 're...
# Released under The MIT License (MIT) # http://opensource.org/licenses/MIT # Copyright (c) 2013-2015 SCoT Development Team import unittest import numpy as np from numpy.testing import assert_allclose from scot.varbase import VARBase as VAR from scot.datatools import acm epsilon = 1e-10 class TestVAR(unittest.Tes...
[ "numpy.random.seed", "numpy.abs", "numpy.random.randn", "scot.varbase.VARBase", "numpy.asarray", "numpy.array", "scot.datatools.acm", "numpy.dot", "numpy.testing.assert_allclose", "numpy.var", "numpy.all" ]
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# -*- coding: utf-8 -*- # ============================================================================= # Here we will be testing with mixtures of student-t, 1d # ============================================================================= import sys sys.path.insert(0,"../../src2") import math import functools impor...
[ "numpy.load", "numpy.random.seed", "torch.manual_seed", "sys.path.insert", "numpy.exp", "numpy.log10", "matplotlib.pyplot.subplots" ]
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# vim: expandtab:ts=4:sw=4 from __future__ import absolute_import import numpy as np from linear_assignment import min_marg_matching import pdb def get_unmatched(all_idx, matches, i, marginalization=None): assigned = [match[i] for match in matches] unmatched = set(all_idx) - set(assigned) if marginalizati...
[ "linear_assignment.min_marg_matching", "numpy.sum", "numpy.argmax" ]
[((3803, 3898), 'linear_assignment.min_marg_matching', 'min_marg_matching', (['self.marginalizations', 'self.confirmed_tracks', 'self.assignment_threshold'], {}), '(self.marginalizations, self.confirmed_tracks, self.\n assignment_threshold)\n', (3820, 3898), False, 'from linear_assignment import min_marg_matching\n'...
import numpy as np import torch import scipy as sp # integrated gradients def integrated_gradients(inputs, model, target_label_idx, predict_and_gradients, steps=50, device=None, baseline=None, path=None): if device and "cpu" in inputs.device.type: inputs = inputs.to(device) if...
[ "numpy.array", "numpy.transpose", "torch.rand_like", "numpy.average" ]
[((867, 892), 'numpy.average', 'np.average', (['grads'], {'axis': '(0)'}), '(grads, axis=0)\n', (877, 892), True, 'import numpy as np\n'), ((909, 943), 'numpy.transpose', 'np.transpose', (['avg_grads', '(1, 2, 0)'], {}), '(avg_grads, (1, 2, 0))\n', (921, 943), True, 'import numpy as np\n'), ((1883, 1913), 'numpy.averag...
import pytest import numpy as np import numpy.testing as nptest from ellipse import LsqEllipse def make_dataset(center, width, height, phi, n_points): """Generate Elliptical data with noise""" t = np.linspace(0, 2 * np.pi, n_points) x = (center[0] + width * np.cos(t) * np.cos(phi) - h...
[ "numpy.testing.assert_almost_equal", "ellipse.LsqEllipse", "pytest.raises", "numpy.sin", "numpy.linspace", "numpy.cos", "pytest.mark.parametrize", "numpy.testing.assert_array_almost_equal" ]
[((560, 611), 'pytest.mark.parametrize', 'pytest.mark.parametrize', (['"""center"""', '[[1, 1], [0, 1]]'], {}), "('center', [[1, 1], [0, 1]])\n", (583, 611), False, 'import pytest\n'), ((613, 656), 'pytest.mark.parametrize', 'pytest.mark.parametrize', (['"""width"""', '[0.4, 10]'], {}), "('width', [0.4, 10])\n", (636, ...
from .utils import sigmoid, tanh import numpy as np class LSTM: def __init__(self, input_shape, output_shape): self.input_shape = input_shape self.layer_1 = self.Unit(input_shape, output_shape) def forward(self, x=.34): print(self.unit(self.cell_state, self.output_gate, x)) class...
[ "numpy.random.uniform", "numpy.ones_like", "numpy.transpose", "numpy.zeros", "numpy.random.random", "numpy.dot" ]
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import os import sys import wget import numpy as np from numpy import unique from Bio.SeqIO import parse as parse_fasta from .geneontology import * from .consts import * cafa3_targets_url = 'http://biofunctionprediction.org/cafa-targets/CAFA3_targets.tgz' cafa3_train_url = 'http://biofunctionprediction.org/cafa-...
[ "os.remove", "numpy.invert", "numpy.zeros", "os.system", "os.path.exists", "wget.download", "numpy.array", "os.listdir" ]
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# -*- coding: utf-8 -*- # linear_regression/test_polynomial.py """ Created on Thu Jan 25 19:24:00 2018 @author: jercas """ import regression from matplotlib import cm from mpl_toolkits.mplot3d import axes3d import matplotlib.pyplot as plt import matplotlib.ticker as mtick import numpy as np if __name__ == "__main__"...
[ "numpy.matrix", "matplotlib.pyplot.show", "numpy.power", "matplotlib.pyplot.legend", "numpy.ones", "regression.bgd", "matplotlib.pyplot.figure", "regression.loadDataSet", "matplotlib.ticker.FormatStrFormatter", "numpy.linspace", "regression.hypothesis" ]
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from dataclasses import dataclass from logging import Logger, getLogger from typing import Dict, Union import numpy as np import pandas as pd from omegaconf import MISSING from fseval.types import IncompatibilityError, TerminalColor from .._experiment import Experiment from ._config import RankAndValidatePipeline ...
[ "pandas.DataFrame", "fseval.types.TerminalColor.yellow", "numpy.ndim", "fseval.types.IncompatibilityError", "logging.getLogger" ]
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