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# Copyright (c) 2021 Graphcore Ltd. All rights reserved. import popart import numpy as np import test_util as tu import re @tu.requires_ipu_model def test_groupHostSync(): builder = popart.Builder() a = builder.addInputTensor(popart.TensorInfo("FLOAT16", [1])) w = builder.addInitializedInputTensor(np.one...
[ "popart.Patterns", "popart.Builder", "numpy.ones", "popart.AnchorReturnType", "test_util.create_test_device", "numpy.array", "popart.PyStepIO", "popart.TensorInfo", "popart.SessionOptions", "popart.DataFlow", "re.search" ]
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import cPickle import functools import os import fuel import numpy from fuel.schemes import ( ConstantScheme, ShuffledExampleScheme, SequentialExampleScheme, IndexScheme) from fuel.streams import DataStream, AbstractDataStream from fuel.transformers import ( SortMapping, Padding, ForceFloatX, Batch, Mapping, U...
[ "fuel.transformers.Filter", "cPickle.load", "fuel.transformers.Padding", "numpy.tile", "os.path.join", "picklable_itertools.iter_dispatch.iter_", "numpy.random.RandomState", "numpy.apply_along_axis", "fuel.transformers.ForceFloatX", "fuel.transformers.Merge", "fuel.schemes.ShuffledExampleScheme"...
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import sys sys.path.remove('/opt/ros/kinetic/lib/python2.7/dist-packages') # in order to import cv2 under python3 import cv2 import glob import matplotlib.pyplot as plt import pickle import numpy as np import matplotlib.image as mpimg # """ # prepare object points, like (0,0,0), (1,0,0), (2,0,0) ....,(6,5,0) objp = n...
[ "matplotlib.image.imread", "sys.path.remove", "matplotlib.pyplot.show", "cv2.findChessboardCorners", "cv2.cvtColor", "numpy.zeros", "cv2.imread", "cv2.calibrateCamera", "glob.glob", "cv2.drawChessboardCorners", "matplotlib.pyplot.subplots", "matplotlib.pyplot.savefig", "cv2.undistort" ]
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# I this file will take in the time_data.yml files and plot import yaml import matplotlib.pyplot as plt import sys import numpy as np def read_yaml_file(filename): with open(filename, 'r') as f: data = yaml.load(f) return(data) def array_to_dist(array): return(np.mean(array), np.std(array)) def ...
[ "numpy.std", "yaml.load", "numpy.mean" ]
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from __future__ import division import torch import torch.nn as nn from .base import BaseDetector from .test_mixins import RPNTestMixin from .. import builder from ..registry import DETECTORS from mmdet.core import (assign_and_sample, bbox2roi, bbox2result, multi_apply, merge_aug_masks) impor...
[ "torch.nn.ReLU", "torch.nn.ModuleList", "mmdet.core.bbox2roi", "numpy.float32", "torch.cat", "torch.mm", "torch.transpose", "torch.nn.Softmax", "torch.nn.Linear", "mmdet.core.bbox2result", "mmdet.core.merge_aug_masks", "torch.no_grad", "mmdet.core.multi_apply", "torch.from_numpy" ]
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"""Testing utilities for the MNE BIDS converter.""" # Authors: <NAME> <<EMAIL>> # <NAME> <<EMAIL>> # <NAME> <<EMAIL>> # # License: BSD-3-Clause import os.path as op # This is here to handle mne-python <0.20 import warnings from datetime import datetime from pathlib import Path import pytest from nump...
[ "mne_bids.BIDSPath", "mne_bids.utils._age_on_date", "mne.io.read_raw_brainvision", "mne_bids.utils._infer_eeg_placement_scheme", "mne_bids.path._path_to_str", "pathlib.Path", "mne_bids.utils._handle_datatype", "os.path.join", "os.path.dirname", "mne.io.read_raw_bti", "numpy.random.RandomState", ...
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# This file stores check whether the altitude and control scheduled are being # stored correctly for every eval_QoI import os import numpy as np import cmath import chaospy as cp from pystatreduce.new_stochastic_collocation import StochasticCollocation2 from pystatreduce.stochastic_collocation import StochasticColloca...
[ "numpy.array", "numpy.diag", "numpy.zeros", "pystatreduce.examples.supersonic_interceptor.interceptor_rdo2.DymosInterceptorGlue" ]
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"""Functions to analyze model performance.""" import pytest import unittest.mock as mock import deepchem import numpy as np import cytoxnet.models.analyze import cytoxnet.models.models def test_pair_predict(): """Plot of predictions vs true values.""" # set up a mock model to use model = mock.MagicMock...
[ "unittest.mock.MagicMock", "unittest.mock.patch", "pytest.raises", "numpy.random.random", "numpy.array" ]
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''' This code is part of QuTIpy. (c) Copyright <NAME>, 2021 This code is licensed under the Apache License, Version 2.0. You may obtain a copy of this license in the LICENSE.txt file in the root directory of this source tree or at http://www.apache.org/licenses/LICENSE-2.0. Any modifications or derivative works of t...
[ "qutipy.general_functions.eye", "numpy.sqrt", "qutipy.general_functions.ket" ]
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""" Plot the results from the evaluations on artificial data. """ # TODO: Get these from somewhere else? import numpy as np import matplotlib.pyplot as plt import scipy.optimize as op import pickle from collections import OrderedDict from glob import glob search_strategies = OrderedDict([ ("BayesStepper", dict...
[ "numpy.log", "numpy.ones", "numpy.argsort", "numpy.product", "pickle.load", "numpy.array", "numpy.max", "matplotlib.pyplot.subplots" ]
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# BSD 3-Clause License; see https://github.com/jpivarski/awkward-1.0/blob/master/LICENSE """ Source and Resource for a memory mapped file, which is never multithreaded. """ from __future__ import absolute_import import numpy import uproot4.source.chunk import uproot4.source.futures import uproot4._util class Memm...
[ "numpy.memmap" ]
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import math import random import os import numpy as np import torch from torch import nn, autograd, optim from torch.nn import functional as F from torch.utils import data import torch.distributed as dist from torchvision import transforms from torchvision.utils import save_image from tqdm import tqdm from args import...
[ "numpy.random.seed", "torch.manual_seed", "torch.load", "utils.mkdir", "torch.randn", "torch.save", "model.Generator", "torchvision.utils.save_image", "args.args.input.strip", "model.MultiScaleTextureGenerator", "torch.no_grad", "os.path.join", "args.args.load_ckpt.strip", "utils.deprocess...
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# Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by app...
[ "numpy.sum", "argparse.ArgumentParser", "tensorflow.variables_initializer", "tensorflow.local_variables_initializer", "tensorflow.ConfigProto", "tensorflow.matmul", "tensorflow.nn.rnn_cell.LSTMCell", "tensorflow.truncated_normal", "tensorflow.get_variable", "tensorflow.nn.softmax", "tensorflow.c...
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""" Methods for constructing point clouds from meshes. """ import numpy as np def from_mesh(vertices, triangles, n=1000): """ Randomly sample points by area on a triangle mesh. This function is extremely fast by using broadcasting/numpy operations in lieu of loops Inputs ------- vertic...
[ "numpy.sum", "numpy.zeros", "numpy.cross", "numpy.cumsum", "numpy.arange", "numpy.random.rand" ]
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import numpy as np import pydensecrf.densecrf as dcrf from pydensecrf.utils import unary_from_softmax def crf_inference(img, probs, t=10, scale_factor=1, labels=21): h, w = img.shape[:2] n_labels = labels d = dcrf.DenseCRF2D(w, h, n_labels) unary = unary_from_softmax(probs) unary = np.ascontigu...
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import numpy as np import openamundsen.constants as c import pandas as pd def day_angle(doy): """ Return the day of the year in angular form. Parameters ---------- doy : int Day of the year (Jan 1 = 1). Returns ------- day_angle : float Day angle in radians. """ ...
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''' This code is part of QuTIpy. (c) Copyright <NAME>, 2021 This code is licensed under the Apache License, Version 2.0. You may obtain a copy of this license in the LICENSE.txt file in the root directory of this source tree or at http://www.apache.org/licenses/LICENSE-2.0. Any modifications or derivative works of t...
[ "numpy.conjugate" ]
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import sys import numpy as np import pandas as pd import hypercomparison.utils import hypercomparison.networks import hypercomparison.correlation_and_greedy_routing from rpy2.robjects.packages import importr hydra = importr('hydra') import rpy2.robjects.numpy2ri rpy2.robjects.numpy2ri.activate() logger = hypercompari...
[ "numpy.array", "rpy2.robjects.packages.importr", "pandas.DataFrame" ]
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import numpy as np from scipy import linalg from numpy import matmul import time import torch def LU_solver(A,b): P,L,U = linalg.lu(A) y = linalg.solve(L,matmul(P,b)) x = linalg.solve(U,y) return x def Simulation_LU_solver(A,b,x): P,L,U = linalg.lu(A) y = linalg.solve(L,matmul(P,b)) x = li...
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import numpy as np import matplotlib.pyplot as plt datapath = 'C:\\Users\\arvid\\Documents\\KTH\\Masterkurser\\Deep Learning\\Assignments\\Assignment 1\\' np.random.seed(137) def unpickle(file): import pickle with open(file, 'rb') as fo: dict = pickle.load(fo, encoding='bytes') return dict def o...
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''' description: FRBCat functionality for pyAccess license: APACHE 2.0 author: <NAME>, NLeSC (<EMAIL>) ''' import pymysql.cursors import pandas as pd from pyAccess import dbase as dbase from pyAccess import utils as utils import os import sys from numpy import append as npappend from numpy import arr...
[ "pyAccess.utils.dms2decdeg", "voeventparse.dump", "voeventparse.set_author", "pyAccess.dbase.extract_from_db_sql", "os.path.dirname", "voeventparse.Group", "voeventparse.Inference", "voeventparse.Param", "numpy.append", "datetime.datetime.utcnow", "numpy.where", "numpy.array", "voeventparse....
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from __future__ import division import numpy as np from numpy.testing import assert_equal from pyoperators import ( CompositionOperator, ConstantOperator, Operator, ZeroOperator, flags, rule_manager, O) from pyoperators.utils import ndarraywrap from pyoperators.utils.testing import ( assert_is, assert_is_in...
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"""Exposes functions to estimate population size given a list of samples.""" from collections import Counter import numpy as np def _calculate_error(estimate, num_entities, sample_sizes): """Calculates the error of a population estimate given the number of entities observed and the sizes of samples taken wi...
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#!/usr/bin/env python3 import numpy as np import matplotlib.pyplot as plt from matplotlib.patches import Arc from writeout import writeout plt.rcParams["font.family"] = "serif" plt.rcParams["mathtext.fontset"] = "cm" fsize = 20.0 def makeaxes(xmin, xmax, ymin, ymax): x = np.linspace(xmin, xmax, 2) y = np.li...
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import numpy as np def embed_seq(time_series, tau, embedding_dimension): """Build a set of embedding sequences from given time series `time_series` with lag `tau` and embedding dimension `embedding_dimension`. Let time_series = [x(1), x(2), ... , x(N)], then for each i such that 1 < i < N - (embedding...
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# MIT License # # Copyright (c) 2021 GGggg-sp # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, pub...
[ "pickle.dump", "openpyxl.Workbook", "openpyxl.styles.Alignment", "numpy.random.choice", "openpyxl.styles.Border", "openpyxl.styles.PatternFill", "openpyxl.styles.Side" ]
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import numpy as np class Parabola: coefficients: np.ndarray # Python 3.5 doesn't like this a: float b: float c: float extreme_point: list vertex_point: list def __init__(self, p: list, q: list, r: list): """Define a parabolic curve from 3 points. Given points are x1,y1 ....
[ "numpy.linalg.solve", "numpy.array" ]
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from skimage.io import imsave import numpy as np from skimage.transform import resize from model import bce_dice_loss, iou, dice_coef from read_one_image import read_one_image from post_process_image import post_processing, colorize_image from tensorflow.keras.models import load_model import tensorflow as tf class pre...
[ "tensorflow.keras.models.load_model", "read_one_image.read_one_image", "skimage.io.imsave", "tensorflow.config.set_visible_devices", "tensorflow.config.list_physical_devices", "tensorflow.config.experimental.set_memory_growth", "numpy.array", "skimage.transform.resize", "tensorflow.config.get_visibl...
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import seaborn as sns import pandas as pd import matplotlib.pyplot as plt plt.rcParams.update({'font.size': 10}) import json import os, sys import numpy as np if __name__ == "__main__": fname = sys.argv[1] data = np.loadtxt(fname) fig, ax = plt.subplots(1, figsize=(7,2.5)) # output profile and set po...
[ "matplotlib.pyplot.show", "numpy.abs", "matplotlib.pyplot.subplots", "matplotlib.pyplot.rcParams.update", "numpy.loadtxt", "matplotlib.pyplot.tight_layout" ]
[((74, 112), 'matplotlib.pyplot.rcParams.update', 'plt.rcParams.update', (["{'font.size': 10}"], {}), "({'font.size': 10})\n", (93, 112), True, 'import matplotlib.pyplot as plt\n'), ((222, 239), 'numpy.loadtxt', 'np.loadtxt', (['fname'], {}), '(fname)\n', (232, 239), True, 'import numpy as np\n'), ((255, 288), 'matplot...
import librosa import librosa.display import numpy as np from pydub import AudioSegment import torch from matplotlib import pyplot as plt SAMPLE = 44100 TOP = 32767 def load_wave_file_to_numpy(file_path, sample_rate=SAMPLE, *args, **kwargs): return librosa.load(file_path, sr=sample_rate, *args, **kwargs) def...
[ "matplotlib.pyplot.title", "numpy.abs", "torch.stft", "matplotlib.pyplot.margins", "numpy.angle", "librosa.istft", "matplotlib.pyplot.figure", "numpy.sin", "pydub.AudioSegment.from_file", "librosa.feature.melspectrogram", "librosa.feature.mfcc", "numpy.zeros_like", "matplotlib.pyplot.close",...
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import random, os import numpy as np from torch.utils.data import Dataset from sentence_transformers import InputExample import csv from typing import List, Tuple, Optional, Union import copy class IMDB62AvDataset(Dataset): """Dataset for Author Verification on the IMDB62 Dataset.""" def __init__(self, ...
[ "numpy.random.uniform", "copy.deepcopy", "csv.reader", "argparse.ArgumentParser", "csv.writer", "random.sample", "sentence_transformers.InputExample", "random.choice", "os.path.join" ]
[((7360, 7459), 'argparse.ArgumentParser', 'argparse.ArgumentParser', ([], {'description': '"""Get args for building train/test splits of IMDB dataset"""'}), "(description=\n 'Get args for building train/test splits of IMDB dataset')\n", (7383, 7459), False, 'import argparse\n'), ((8634, 8662), 'copy.deepcopy', 'cop...
from abc import abstractmethod, ABC from py_wake.site._site import Site, LocalWind from py_wake.wind_turbines import WindTurbines import numpy as np from py_wake.flow_map import FlowMap, HorizontalGrid class WindFarmModel(ABC): """Base class for RANS and engineering flow models""" def __init__(self, site, wi...
[ "numpy.isin", "numpy.atleast_1d", "matplotlib.pyplot.show", "py_wake.flow_map.HorizontalGrid", "py_wake.flow_map.FlowMap", "numpy.argwhere", "matplotlib.pyplot.figure", "py_wake.site._site.LocalWind", "py_wake.IEA37SimpleBastankhahGaussian", "py_wake.examples.data.iea37.IEA37Site", "py_wake.exam...
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import pandas as pd import numpy as np import scipy import os, sys import matplotlib matplotlib.use('Agg') import matplotlib.pyplot as plt import pylab import matplotlib as mpl import seaborn as sns import analysis_utils from multiprocessing import Pool sys.path.append('../utils/') from game_utils import * in_d...
[ "sys.path.append", "pandas.DataFrame", "pandas.io.parsers.read_csv", "analysis_utils.get_while_value", "matplotlib.pyplot.close", "matplotlib.pyplot.legend", "seaborn.despine", "analysis_utils.get_value", "matplotlib.use", "numpy.mean", "pdb.set_trace", "multiprocessing.Pool", "matplotlib.py...
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import pickle from matplotlib import pyplot as plt from mpl_toolkits.mplot3d import Axes3D import numpy as np import cassie import time from tempfile import TemporaryFile FILE_PATH = "./hardware_logs/aslip_unified_no_delta_80_TS_only_sim/" FILE_NAME = "2020-01-27_10:26_logfinal" logs = pickle.load(open(FILE_PATH + ...
[ "matplotlib.pyplot.subplot", "matplotlib.pyplot.show", "numpy.asarray", "numpy.zeros", "numpy.array", "numpy.savez" ]
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import numpy as np import os from PIL import Image def convert_to_10class(d): d_mod = np.zeros((len(d), 10), dtype=np.float32) for num, contents in enumerate(d): d_mod[num][int(contents)] = 1.0 # debug # print("d_mod[100] =", d_mod[100]) # print("d_mod[200] =", d_mod[200]) return d_mo...
[ "PIL.Image.fromarray", "numpy.zeros", "numpy.tile" ]
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import math import random import cv2 import mmcv import numpy as np from mmhuman3d.core.conventions.keypoints_mapping import get_flip_pairs from mmhuman3d.utils.demo_utils import box2cs from ..builder import PIPELINES from .transforms import ( _rotate_smpl_pose, affine_transform, get_affine_transform, ) ...
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# -*- coding: utf-8 -*- import sys import os sys.path.insert(1, os.path.abspath(os.path.curdir)) import numpy as np from models import Connect4ActionMaskModel from config.connect4_config import Connect3Config from utils.learning_behaviour_utils import LSTM_model,split_train_val,\ minimax_vs_minimax_connect3_singl...
[ "os.path.abspath", "numpy.load", "tensorflow.math.reduce_mean", "tensorflow.math.argmax", "env.connect4_multiagent_env.Connect4Env", "numpy.argmax", "utils.learning_behaviour_utils.LSTM_model", "numpy.asarray", "ray.rllib.agents.ppo.PPOTrainer", "numpy.expand_dims", "numpy.exp", "numpy.random....
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import pandas as pd import numpy as np from scipy.stats import norm import matplotlib.pyplot as plt from numpy import genfromtxt import os def gaus(feature): data = genfromtxt('./dataset/modified_weather/'+ feature +'.csv', delimiter=',') data = data.ravel() # clear nan values data = dat...
[ "pandas.DataFrame", "os.makedirs", "pandas.read_csv", "os.path.exists", "numpy.genfromtxt", "numpy.isnan" ]
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# -*- coding: utf-8 -*- from __future__ import annotations import warnings import collections from typing import Dict, Optional from dataclasses import dataclass, field import numpy as np import pandas as pd # type: ignore import xarray as xr from shapely.geometry import LineString # type: ignore from shapely.geomet...
[ "pandas.DataFrame", "warnings.filterwarnings", "xarray.open_dataset", "dataclasses.field", "collections.defaultdict", "geopandas.GeoDataFrame", "shapely.geometry.LineString", "warnings.catch_warnings", "numpy.array", "numpy.linalg.norm", "numpy.dot", "pandas.concat" ]
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# -*- coding: utf-8 -*- import requests from bs4 import BeautifulSoup import time import os import numpy as np from nltk.tokenize import word_tokenize import unicodedata import re import pickle GREEK_STOP = ['αδιακοπα', 'αι', 'ακομα', 'ακομη', 'ακριβως', 'αληθεια', 'αληθινα', 'αλλα', 'αλλαχου', 'αλλες', 'αλλη', ...
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"""One dimensional dataset, Gaussian with sinus wave mean, variance increasing in x Taken from paper: "https://arxiv.org/abs/1906.01620" """ import logging from pathlib import Path import csv import numpy as np import torch.utils.data import matplotlib.pyplot as plt class GaussianSinus(torch.utils.data.Dataset): ...
[ "numpy.random.uniform", "matplotlib.pyplot.show", "numpy.random.shuffle", "csv.reader", "matplotlib.pyplot.legend", "numpy.savetxt", "pathlib.Path", "numpy.sin", "numpy.arange", "numpy.array", "numpy.exp", "numpy.column_stack", "numpy.diag", "matplotlib.pyplot.subplots", "logging.getLogg...
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import numpy as np from pytest import approx, raises import context # noqa from src import line_search from src.least_squares import least_squares class TestGoldenSection: def test_correct_1d(self): """ Check if one dimensional problems which are well specified are solved correctly. """ ...
[ "numpy.random.uniform", "src.least_squares.least_squares", "src.line_search.goldensection", "pytest.raises", "pytest.approx" ]
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import numpy as np # from numpy import linalg as LA import matplotlib.pyplot as plt # import networkx as nx # from scipy import integrate from dynamic_systems import Dynamics import reservoir NODES = 400 TIME_STEP = 0.1 TRAINING_TIME = 260 TRANSIENT_TIME = 200 TEST_TIME = 100 INPUTS = [0] OUTPUTS = [1, 2] INITIAL_CO...
[ "matplotlib.pyplot.subplot", "matplotlib.pyplot.show", "matplotlib.pyplot.plot", "matplotlib.pyplot.legend", "reservoir.split_data", "reservoir.gen_data", "matplotlib.pyplot.figure", "numpy.mean", "numpy.arange", "matplotlib.pyplot.ylabel", "matplotlib.pyplot.xlabel", "reservoir.gen_A" ]
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# Copyright <NAME> 2017 """ Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distri...
[ "numpy.copy", "pyopencl.enqueue_copy", "test.test_common.build_kernel", "test.test_common.offset_type", "test.test_common.ll_to_cl", "pyopencl.LocalMemory" ]
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#!/usr/bin/env python import matplotlib.pyplot as plt import numpy as np import argparse params = {'axes.labelsize': 14, 'axes.titlesize': 16, 'xtick.labelsize': 12, 'ytick.labelsize': 12, 'legend.fontsize': 14} plt.rcParams.update(params) if __name__ == '__main__': msg = ...
[ "matplotlib.pyplot.tight_layout", "matplotlib.pyplot.show", "argparse.ArgumentParser", "numpy.append", "matplotlib.pyplot.rcParams.update", "numpy.loadtxt", "matplotlib.pyplot.subplots", "matplotlib.pyplot.savefig" ]
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import numpy as np from PIL import Image import h5py from astropy.io import fits from astropy.table import Table from astropy.convolution import convolve from astropy.cosmology import WMAP7 as cosmo import astropy.units as u from astropy import wcs import glob import pickle import os import matplotlib.pyplot as plt ...
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#! /usr/bin/python #-------------------------------------------------------------------- # PROGRAM : write_to_nc.py # CREATED BY : hjkim @IIS.2017-10-17 06:23:16.129216 # MODIFED BY : # # USAGE : $ ./write_to_nc.py # # DESCRIPTION: #------------------------------------------------------cf0.2@20120401 import ...
[ "netCDF4.Dataset", "numpy.ma.masked_equal", "collections.OrderedDict" ]
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# Copyright 2022 Meta Platforms authors and The HuggingFace Team. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # U...
[ "json.dump", "numpy.moveaxis", "transformers.FlavaFeatureExtractor.from_pretrained", "transformers.utils.is_vision_available", "transformers.FlavaProcessor", "transformers.BertTokenizerFast.from_pretrained", "pytest.raises", "tempfile.mkdtemp", "transformers.BertTokenizer.from_pretrained", "random...
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import matplotlib.pyplot as plt import numpy as np import pandas as pd import seaborn as sns from sklearn.metrics import ( accuracy_score, classification_report, confusion_matrix, f1_score, make_scorer, precision_score, recall_score, average_precision_score, auc ) def plot_confusi...
[ "numpy.trace", "numpy.sum", "seaborn.heatmap", "numpy.asarray", "sklearn.metrics.confusion_matrix" ]
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""" Helper functions for image manipulation """ from __future__ import absolute_import, division import numpy as np from skimage.util import img_as_float __all__ = ['to_norm', 'un_norm'] def to_norm(arr): """ Helper function to normalise/scale an array. This is needed for example for scikit-image which...
[ "skimage.util.img_as_float", "numpy.array" ]
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"""Fourier matrix.""" import numpy as np def fourier(dim: int) -> np.ndarray: r""" Generate the Fourier transform matrix [WikDFT]_. Generates the `dim`-by-`dim` unitary matrix that implements the quantum Fourier transform. The Fourier matrix is defined as: .. math:: W_N = \frac{1}{N...
[ "numpy.power", "numpy.arange", "numpy.exp", "numpy.sqrt" ]
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import librosa import numpy as np import pandas as pd import os # 512 samples per frame at 44.1kHz is around 86 fps def build_features(y, sr, n_fft=4096, hop_length=512): params = { 'n_fft': n_fft, 'hop_length': hop_length } S, phase = librosa.magphase(librosa.stft(y, **params)) feature...
[ "librosa.feature.rms", "numpy.abs", "pandas.read_csv", "numpy.empty", "numpy.asarray", "numpy.floor", "numpy.zeros", "numpy.flipud", "os.path.exists", "numpy.ones", "librosa.cqt", "librosa.feature.spectral_flatness", "numpy.linspace", "librosa.hz_to_octs", "librosa.stft" ]
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import numpy as np import tensorflow as tf from run_seg_partnet import tf_IoU_per_shape, result_callback, get_probabilities, ComputeGraphSeg def test_tf_iou_per_shape(): # following logit and label are for one 3D model that belongs in category C1 which has 3 parts logit = tf.Variable(initial_value=np.array([...
[ "numpy.sum", "run_seg_partnet.result_callback", "tensorflow.global_variables_initializer", "run_seg_partnet.tf_IoU_per_shape", "tensorflow.Session", "run_seg_partnet.get_probabilities", "numpy.array", "run_seg_partnet.ComputeGraphSeg.set_weights" ]
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""" @author : <NAME> @date : 1 - 23 - 2021 The loss functions are really simple. You just need to understand whether it is a classification or regression task. All losses will be set in the model.finalize() model. """ import numpy as np import warnings from scipy.special import softmax as sfmx_indiv warnings.filterwa...
[ "numpy.apply_along_axis", "numpy.power", "numpy.log", "warnings.filterwarnings" ]
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import numpy as np import keras.backend.tensorflow_backend as backend from keras.models import Sequential from keras.layers import Dense, Dropout, Conv2D, MaxPooling2D, Activation, Flatten from keras.optimizers import Adam from keras.callbacks import TensorBoard import tensorflow as tf from collections import deque imp...
[ "numpy.random.seed", "game.VanilaGame", "tensorflow.compat.v1.InteractiveSession", "random.sample", "keras.models.Sequential", "tensorflow.executing_eagerly", "numpy.random.randint", "collections.deque", "keras.layers.Flatten", "numpy.max", "random.seed", "keras.layers.MaxPooling2D", "tensor...
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"""Testing for Linear model module.""" import numpy as np import pytest from sklearn.base import is_regressor from sklearn.datasets import load_diabetes from sklearn.model_selection import train_test_split from sklearn.exceptions import NotFittedError from pyrcn.linear_model import IncrementalRegression from sklearn...
[ "pyrcn.linear_model.IncrementalRegression", "sklearn.model_selection.train_test_split", "sklearn.datasets.load_diabetes", "numpy.random.RandomState", "pytest.raises", "numpy.matmul", "numpy.linspace", "numpy.array_split", "numpy.testing.assert_allclose", "sklearn.base.is_regressor", "sklearn.lin...
[((374, 404), 'sklearn.datasets.load_diabetes', 'load_diabetes', ([], {'return_X_y': '(True)'}), '(return_X_y=True)\n', (387, 404), False, 'from sklearn.datasets import load_diabetes\n'), ((479, 504), 'numpy.random.RandomState', 'np.random.RandomState', (['(42)'], {}), '(42)\n', (500, 504), True, 'import numpy as np\n'...
#!/usr/bin/env python # -*- coding: utf-8 -*- """ Model for fitting an absorption profile to spectral data. """ from __future__ import (division, print_function, absolute_import, unicode_literals) __all__ = ["ProfileFittingModel"] import logging import numpy as np import scipy.optimize as op...
[ "numpy.nanpercentile", "numpy.abs", "numpy.nanmedian", "numpy.floor", "numpy.ones", "numpy.isnan", "numpy.mean", "numpy.exp", "astropy.constants.c.to", "numpy.polyval", "numpy.std", "numpy.isfinite", "numpy.max", "numpy.log10", "numpy.nansum", "numpy.ones_like", "scipy.optimize.curve...
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import glob import os import numpy as np import pickle from sklearn.model_selection import train_test_split #import importlib #import logisRegresANA def main(): np.random.seed(1) # shuffle random seed generator # Ising model parameters L=40 # linear system size J=-1.0 # Ising interaction T=np.linspace(0....
[ "pickle.dump", "numpy.random.seed", "sklearn.model_selection.train_test_split", "pickle.load", "numpy.where", "numpy.linspace", "numpy.unpackbits", "os.path.expanduser", "numpy.concatenate" ]
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import numpy as np import pytest from unittest import TestCase from unittest.mock import MagicMock from mvc.controllers.eval import EvalController from tests.test_utils import DummyNetwork, DummyMetrics from tests.test_utils import make_input, make_output class TestEvalController: def setup_method(self): ...
[ "mvc.controllers.eval.EvalController", "tests.test_utils.make_output", "unittest.mock.MagicMock", "tests.test_utils.DummyMetrics", "numpy.zeros", "tests.test_utils.make_input", "tests.test_utils.DummyNetwork", "pytest.raises", "numpy.random.random", "numpy.random.randint", "pytest.mark.parametri...
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# -*- coding: utf-8 -*- from load_model_from_file import load_model_from_json import os, sys from PIL import Image import numpy as np def load_img(path): """ """ img = np.array(Image.open(path))[:, :, 0:3] img = np.expand_dims(img, axis=0) return img def main(): """ """ hom...
[ "os.path.abspath", "load_model_from_file.load_model_from_json", "numpy.expand_dims", "PIL.Image.open", "os.path.join" ]
[((235, 262), 'numpy.expand_dims', 'np.expand_dims', (['img'], {'axis': '(0)'}), '(img, axis=0)\n', (249, 262), True, 'import numpy as np\n'), ((391, 448), 'os.path.join', 'os.path.join', (['home', 'sys.argv[1]', 'sys.argv[2]', 'sys.argv[3]'], {}), '(home, sys.argv[1], sys.argv[2], sys.argv[3])\n', (403, 448), False, '...
# First, and before importing any Enthought packages, set the ETS_TOOLKIT # environment variable to qt4, to tell Traits that we will use Qt. from mayavi.core.ui.api import MayaviScene, MlabSceneModel, SceneEditor from traits.api import HasTraits, Instance, on_trait_change from traitsui.api import View, Item from mayav...
[ "traits.api.Instance", "PyQt4.QtGui.QAction.__init__", "mayavi.mlab.triangular_mesh", "traits.api.on_trait_change", "utils.save_obj", "mayavi.mlab.clf", "PyQt4.QtGui.QVBoxLayout", "numpy.zeros", "time.time", "PyQt4.QtGui.QSlider.__init__", "reshaper.Reshaper", "mayavi.core.ui.api.SceneEditor",...
[((732, 769), 'PyQt4.QtCore.pyqtSignal', 'QtCore.pyqtSignal', (['int', 'int', 'int', 'int'], {}), '(int, int, int, int)\n', (749, 769), False, 'from PyQt4 import QtGui, QtCore\n'), ((1226, 1248), 'PyQt4.QtCore.pyqtSignal', 'QtCore.pyqtSignal', (['int'], {}), '(int)\n', (1243, 1248), False, 'from PyQt4 import QtGui, QtC...
# coding: utf-8 """ TensorFlow tests. """ import os import cmsml from cmsml.util import tmp_file, tmp_dir from . import CMSMLTestCase class TensorFlowTestCase(CMSMLTestCase): def __init__(self, *args, **kwargs): super(TensorFlowTestCase, self).__init__(*args, **kwargs) os.environ["CUDA_VISIB...
[ "cmsml.tensorflow.load_graph", "os.path.exists", "cmsml.tensorflow.save_graph", "numpy.ones", "cmsml.tensorflow.import_tf", "cmsml.tensorflow.write_graph_summary", "cmsml.util.tmp_file", "cmsml.util.tmp_dir", "os.listdir" ]
[((4007, 4035), 'cmsml.tensorflow.import_tf', 'cmsml.tensorflow.import_tf', ([], {}), '()\n', (4033, 4035), False, 'import cmsml\n'), ((582, 610), 'cmsml.tensorflow.import_tf', 'cmsml.tensorflow.import_tf', ([], {}), '()\n', (608, 610), False, 'import cmsml\n'), ((751, 779), 'cmsml.tensorflow.import_tf', 'cmsml.tensorf...
# This script is part of pyroglancer (https://github.com/SridharJagannathan/pyroglancer). # Copyright (C) 2020 <NAME> # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either vers...
[ "pandas.DataFrame", "json.dump", "os.remove", "os.makedirs", "cloudvolume.Skeleton", "os.path.basename", "navis.core.NeuronList", "os.path.exists", "cloudvolume.datasource.precomputed.sharding.ShardingSpecification", "pymaid.core.CatmaidNeuronList", "cloudvolume.CloudVolume", "numpy.array", ...
[((1968, 2040), 'numpy.array', 'np.array', (["(this_tn[['index', 'parent_ix']].values[1:] - 1)"], {'dtype': '"""uint32"""'}), "(this_tn[['index', 'parent_ix']].values[1:] - 1, dtype='uint32')\n", (1976, 2040), True, 'import numpy as np\n'), ((2057, 2109), 'cloudvolume.Skeleton', 'Skeleton', ([], {'segid': 'x.id', 'vert...
# -*- coding: utf-8 -*- from functools import reduce from operator import mul import numpy as np from africanus.util.docs import DocstringTemplate from africanus.util.numba import jit @jit(nopython=True, nogil=True, cache=True) def _nb_feed_rotation(parallactic_angles, feed_type, feed_rotation): shape = paral...
[ "africanus.util.docs.DocstringTemplate", "numpy.empty", "numpy.sin", "numpy.cos", "functools.reduce", "africanus.util.numba.jit" ]
[((191, 233), 'africanus.util.numba.jit', 'jit', ([], {'nopython': '(True)', 'nogil': '(True)', 'cache': '(True)'}), '(nopython=True, nogil=True, cache=True)\n', (194, 233), False, 'from africanus.util.numba import jit\n'), ((2279, 2934), 'africanus.util.docs.DocstringTemplate', 'DocstringTemplate', (['"""\nComputes th...
# -*- coding: utf-8 -*- import datetime import uuid from collections import abc from typing import MutableSequence, Any, Optional, Sequence import typing import numpy as np from .array import StateVector, CovarianceMatrix, PrecisionMatrix from .base import Type from .numeric import Probability from .particle import P...
[ "uuid.uuid4", "numpy.average", "numpy.sum", "numpy.argmax", "numpy.array" ]
[((18291, 18369), 'numpy.average', 'np.average', (['self.particles.state_vector'], {'axis': '(1)', 'weights': 'self.particles.weight'}), '(self.particles.state_vector, axis=1, weights=self.particles.weight)\n', (18301, 18369), True, 'import numpy as np\n'), ((20756, 20784), 'numpy.argmax', 'np.argmax', (['self.state_ve...
# Copyright Cartopy Contributors # # This file is part of Cartopy and is released under the LGPL license. # See COPYING and COPYING.LESSER in the root of the repository for full # licensing details. from __future__ import (absolute_import, division, print_function) import operator import warnings import matplotlib i...
[ "numpy.arctan2", "cartopy.mpl.ticker.LongitudeFormatter", "numpy.isnan", "numpy.clip", "cartopy.mpl.ticker.LongitudeLocator", "numpy.sin", "numpy.arange", "numpy.meshgrid", "matplotlib.transforms.offset_copy", "numpy.logical_or.reduce", "shapely.geometry.Polygon", "matplotlib.ticker.MaxNLocato...
[((732, 794), 'matplotlib.ticker.MaxNLocator', 'mticker.MaxNLocator', ([], {'nbins': '(9)', 'steps': '[1, 1.5, 1.8, 2, 3, 6, 10]'}), '(nbins=9, steps=[1, 1.5, 1.8, 2, 3, 6, 10])\n', (751, 794), True, 'import matplotlib.ticker as mticker\n'), ((813, 841), 'matplotlib.ticker.MaxNLocator', 'mticker.MaxNLocator', ([], {'nb...
import math import subprocess import einops as eo from loguru import logger import numpy as np import pandas as pd from PIL import Image from scipy.signal import savgol_filter import torch from torch import optim, nn from collections import Counter from pytti import ( format_input, set_t, print_vram_usag...
[ "pandas.DataFrame", "subprocess.run", "scipy.signal.savgol_filter", "loguru.logger.debug", "IPython.display.display", "pytti.rotoscoper.update_rotoscopers", "pytti.vram_usage_mode", "pytti.Transforms.animate_2d", "pytti.Transforms.zoom_3d", "pytti.format_input", "numpy.array", "pytti.freeze_vr...
[((1422, 1476), 'scipy.signal.savgol_filter', 'savgol_filter', (['df[key]', 'window_size', '(2)'], {'mode': '"""nearest"""'}), "(df[key], window_size, 2, mode='nearest')\n", (1435, 1476), False, 'from scipy.signal import savgol_filter\n'), ((17269, 17277), 'pytti.set_t', 'set_t', (['t'], {}), '(t)\n', (17274, 17277), F...
# encoding: utf-8 """ @author: sherlock @contact: <EMAIL> """ import logging import torch import torch.nn as nn from ignite.engine import Engine import pickle from utils.reid_metric import R1_mAP, R1_mAP_reranking from torch.autograd import Variable from torch.nn import functional as F import numpy as np worddict_tmp...
[ "utils.reid_metric.R1_mAP_reranking", "numpy.argmax", "numpy.empty", "numpy.zeros", "torch.cuda.device_count", "torch.nn.functional.softmax", "ignite.engine.Engine", "utils.reid_metric.R1_mAP", "torch.nn.DataParallel", "torch.no_grad", "logging.getLogger", "torch.from_numpy" ]
[((2872, 2890), 'ignite.engine.Engine', 'Engine', (['_inference'], {}), '(_inference)\n', (2878, 2890), False, 'from ignite.engine import Engine\n'), ((3118, 3162), 'logging.getLogger', 'logging.getLogger', (['"""reid_baseline.inference"""'], {}), "('reid_baseline.inference')\n", (3135, 3162), False, 'import logging\n'...
#!/usr/bin/env python # -*- coding: utf-8 -*- import types import numpy import scipy import warnings from scipy.signal import savgol_filter import statsmodels.api as sm lowess = sm.nonparametric.lowess import logging from scipy.signal import savgol_filter import time import sys import copy from datetime import datetim...
[ "numpy.isnan", "numpy.argsort", "numpy.mean", "numpy.interp", "multiprocessing.cpu_count", "numpy.zeros_like", "numpy.multiply", "warnings.simplefilter", "numpy.empty_like", "warnings.catch_warnings", "datetime.datetime.now", "numpy.divide", "copy.deepcopy", "numpy.nan_like", "numpy.medi...
[((2752, 2771), 'copy.deepcopy', 'copy.deepcopy', (['data'], {}), '(data)\n', (2765, 2771), False, 'import copy\n'), ((6424, 6446), 'numpy.empty_like', 'numpy.empty_like', (['data'], {}), '(data)\n', (6440, 6446), False, 'import numpy\n'), ((6455, 6477), 'numpy.empty_like', 'numpy.empty_like', (['data'], {}), '(data)\n...
"""Parse data in the format: Age Uncertainty Sample data assumning a normal distrubtion with mean defined by Age and sigma defined by Uncertainty """ import numpy as np from scipy.stats import norm from QuakeRates.dataman.event_dates import EventDate, EventSet def parse_age_sigma(filename, sigma_level, event_order, ...
[ "QuakeRates.dataman.event_dates.EventDate", "numpy.flip", "numpy.genfromtxt", "scipy.stats.norm.pdf", "numpy.mean", "numpy.array", "numpy.arange", "QuakeRates.dataman.event_dates.EventSet" ]
[((1036, 1092), 'numpy.genfromtxt', 'np.genfromtxt', (['filename'], {'delimiter': 'delimiter', 'names': '(True)'}), '(filename, delimiter=delimiter, names=True)\n', (1049, 1092), True, 'import numpy as np\n'), ((3467, 3487), 'QuakeRates.dataman.event_dates.EventSet', 'EventSet', (['event_list'], {}), '(event_list)\n', ...
# @brief: provides a method to solve the modified Ricatti Equation import numpy as np from scipy.linalg import solve_continuous_are def createLowLevelParams(A, B, Q, R, g, w): # A, B are control matrices # Q, R are cost weights # g = \gamma controls the sensitivity # w is the magnitude of the noise # deter...
[ "numpy.linalg.eigvals", "numpy.linalg.inv", "numpy.array", "numpy.eye", "numpy.linalg.cholesky" ]
[((445, 454), 'numpy.eye', 'np.eye', (['n'], {}), '(n)\n', (451, 454), True, 'import numpy as np\n'), ((941, 950), 'numpy.eye', 'np.eye', (['(4)'], {}), '(4)\n', (947, 950), True, 'import numpy as np\n'), ((956, 965), 'numpy.eye', 'np.eye', (['(2)'], {}), '(2)\n', (962, 965), True, 'import numpy as np\n'), ((974, 1040)...
import pandas as pd import numpy as np import matplotlib.pyplot as plt import random import os print('Welcome to the game!') input('Press enter to continue: ') print('') print('- This is a population simulator for a fictional town.') print('- The town starts with 20 people. With each year that passes, babies will be ...
[ "pandas.DataFrame", "matplotlib.pyplot.show", "pandas.read_csv", "os.getcwd", "random.choice", "random.random", "numpy.where", "pandas.concat" ]
[((1151, 1284), 'pandas.read_csv', 'pd.read_csv', (['"""https://raw.githubusercontent.com/MatthiasWinkelmann/firstname-database/master/firstnames.csv"""'], {'delimiter': '""";"""'}), "(\n 'https://raw.githubusercontent.com/MatthiasWinkelmann/firstname-database/master/firstnames.csv'\n , delimiter=';')\n", (1162, ...
import numpy as np import cv2 import grpc from tritonclient.grpc import service_pb2, service_pb2_grpc import tritonclient.grpc.model_config_pb2 as mc np.random.seed(123) palette = np.random.randint(0, 256, (100, 3)) # url = '10.128.61.7:8001' url = '127.0.0.1:8001' model_name = 'bisenetv2' model_version = '1' ...
[ "tritonclient.grpc.service_pb2.ModelInferRequest", "tritonclient.grpc.service_pb2_grpc.GRPCInferenceServiceStub", "numpy.random.seed", "cv2.imwrite", "numpy.frombuffer", "grpc.insecure_channel", "cv2.imread", "tritonclient.grpc.service_pb2.ModelConfigRequest", "numpy.random.randint", "numpy.array"...
[((155, 174), 'numpy.random.seed', 'np.random.seed', (['(123)'], {}), '(123)\n', (169, 174), True, 'import numpy as np\n'), ((185, 220), 'numpy.random.randint', 'np.random.randint', (['(0)', '(256)', '(100, 3)'], {}), '(0, 256, (100, 3))\n', (202, 220), True, 'import numpy as np\n'), ((707, 749), 'grpc.insecure_channel...
from __future__ import division import math import matplotlib as mpl import numpy as np from matplotlib.ticker import AutoMinorLocator from matplotlib.ticker import MultipleLocator from matplotlib.ticker import FixedLocator from matplotlib.ticker import LogLocator from matplotlib.ticker import FormatStrFormatter fr...
[ "matplotlib.pyplot.clf", "numpy.mean", "matplotlib.pyplot.gca", "matplotlib.pyplot.tick_params", "matplotlib.pyplot.autoscale", "matplotlib.pyplot.rc", "matplotlib.ticker.MultipleLocator", "matplotlib.pyplot.ylim", "matplotlib.pyplot.legend", "numpy.linalg.eigvalsh", "matplotlib.pyplot.ylabel", ...
[((1575, 1614), 'matplotlib.pyplot.rc', 'plt.rc', (['"""font"""'], {'family': '"""serif"""', 'size': '(43)'}), "('font', family='serif', size=43)\n", (1581, 1614), True, 'import matplotlib.pyplot as plt\n'), ((1697, 1713), 'numpy.zeros', 'np.zeros', (['(n, n)'], {}), '((n, n))\n', (1705, 1713), True, 'import numpy as n...
import sys import gym import tensorflow as tf import numpy as np import random import datetime import os from collections import deque os.environ['TF_CPP_MIN_LOG_LEVEL'] = '2' """ Hyper Parameters """ GAMMA = 0.99 # discount factor for target Q INITIAL_EPSILON = 0.8 # starting value of epsilon FINAL_E...
[ "numpy.argmax", "tensorflow.get_collection", "random.sample", "tensorflow.multiply", "numpy.mean", "numpy.arange", "tensorflow.InteractiveSession", "collections.deque", "random.randint", "tensorflow.variable_scope", "tensorflow.placeholder", "tensorflow.summary.FileWriter", "datetime.datetim...
[((1033, 1059), 'collections.deque', 'deque', ([], {'maxlen': 'AVERAGE_OVER'}), '(maxlen=AVERAGE_OVER)\n', (1038, 1059), False, 'from collections import deque\n'), ((3314, 3356), 'tensorflow.placeholder', 'tf.placeholder', (['"""float"""', '[None, state_dim]'], {}), "('float', [None, state_dim])\n", (3328, 3356), True,...
import numpy as np from PIL import Image from deephar.utils.io import WARNING from deephar.utils.io import FAIL from deephar.utils.io import printcn from deephar.utils.pose import pa16j2d from deephar.utils.pose import pa17j3d from deephar.utils.pose import pa20j3d from deephar.utils.colors import hex_colors try: ...
[ "matplotlib.pyplot.show", "matplotlib.pyplot.imshow", "matplotlib.pyplot.close", "deephar.utils.io.printcn", "numpy.zeros", "matplotlib.pyplot.axis", "numpy.ones", "numpy.apply_along_axis", "matplotlib.pyplot.figure", "numpy.array", "matplotlib.pyplot.imsave", "matplotlib.pyplot.gca" ]
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#!/usr/bin/python3 from __future__ import print_function import tensorflow as tf import math from utility.generate_sample import generate_sample import numpy as np import matplotlib import matplotlib.pyplot as plt import matplotlib.animation as animation import argparse import os #LSTM runs faster on CPU os.environ['C...
[ "argparse.ArgumentParser", "tensorflow.compat.v1.disable_eager_execution", "tensorflow.matmul", "matplotlib.pyplot.figure", "numpy.mean", "matplotlib.pyplot.tight_layout", "tensorflow.compat.v1.global_variables_initializer", "tensorflow.compat.v1.name_scope", "tensorflow.compat.v1.placeholder", "m...
[((349, 387), 'tensorflow.compat.v1.disable_eager_execution', 'tf.compat.v1.disable_eager_execution', ([], {}), '()\n', (385, 387), True, 'import tensorflow as tf\n'), ((388, 409), 'matplotlib.use', 'matplotlib.use', (['"""Agg"""'], {}), "('Agg')\n", (402, 409), False, 'import matplotlib\n'), ((688, 798), 'argparse.Arg...
import numpy as np from transformers import AdamW, get_scheduler from transformers.tokenization_utils_base import BatchEncoding def forward_wrapper_tuple(model, batch): input_ids = batch['input_ids'].to(model.first_device) attention_mask = batch['attention_mask'].to(model.first_device) labels = batch['lab...
[ "transformers.tokenization_utils_base.BatchEncoding", "numpy.isclose", "numpy.linalg.norm", "transformers.get_scheduler", "transformers.AdamW" ]
[((1660, 1718), 'transformers.AdamW', 'AdamW', (['optimizer_grouped_parameters'], {'lr': 'args.learning_rate'}), '(optimizer_grouped_parameters, lr=args.learning_rate)\n', (1665, 1718), False, 'from transformers import AdamW, get_scheduler\n'), ((1801, 1954), 'transformers.get_scheduler', 'get_scheduler', ([], {'name':...
"""Same as 01.py, but reports speed""" import os import sys if not os.path.abspath('../../../') in sys.path: sys.path.append('../../../') import swhlab import matplotlib.pyplot as plt import numpy as np import time if __name__=="__main__": abfFile=R"X:\Data\DIC1\2013\08-2013\08-16-2013-DP\13816004.abf" ab...
[ "sys.path.append", "numpy.fft.ifft", "swhlab.ABF", "os.path.abspath", "numpy.average", "numpy.std", "numpy.fft.fft", "time.clock", "numpy.array" ]
[((114, 142), 'sys.path.append', 'sys.path.append', (['"""../../../"""'], {}), "('../../../')\n", (129, 142), False, 'import sys\n'), ((322, 341), 'swhlab.ABF', 'swhlab.ABF', (['abfFile'], {}), '(abfFile)\n', (332, 341), False, 'import swhlab\n'), ((68, 96), 'os.path.abspath', 'os.path.abspath', (['"""../../../"""'], {...
import numpy as np from torch import nn def num_parameters(self): return sum(np.prod(p.shape) for p in self.parameters()) nn.Module.num_parameters = property(num_parameters) from .graph_attention_layer import GraphAttentionNetwork, GraphAttentionLayer from .utils import get_clones from .node_transformer import P...
[ "numpy.prod" ]
[((82, 98), 'numpy.prod', 'np.prod', (['p.shape'], {}), '(p.shape)\n', (89, 98), True, 'import numpy as np\n')]
# -*- coding: utf-8 -*- """ Created on Thu Jul 4 10:23:34 2019 @author: <NAME> """ # This code is used for creating data set for 6DOF robotic arm with use of direct kinematic. from sympy import symbols, pi, sin, cos, simplify from sympy.matrices import Matrix import numpy as np import random import ma...
[ "sympy.symbols", "random.uniform", "numpy.asarray", "sympy.cos", "numpy.zeros", "sympy.simplify", "time.time", "numpy.array", "sympy.sin", "math.degrees", "numpy.concatenate" ]
[((2866, 2877), 'time.time', 'time.time', ([], {}), '()\n', (2875, 2877), False, 'import time\n'), ((3562, 3591), 'numpy.zeros', 'np.zeros', (['[1, 6]'], {'dtype': 'float'}), '([1, 6], dtype=float)\n', (3570, 3591), True, 'import numpy as np\n'), ((3603, 3632), 'numpy.zeros', 'np.zeros', (['[1, 3]'], {'dtype': 'float'}...
import scipy.io import scipy.sparse import argparse import numpy as np import os import json import re import pandas import pdb def parse_args(): parser = argparse.ArgumentParser(description="Convert data from graphsage format to .mat format.") parser.add_argument('--prefix', default="example_data/douban/onlin...
[ "re.split", "os.makedirs", "argparse.ArgumentParser", "pandas.read_csv", "numpy.zeros", "os.path.exists", "numpy.array" ]
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import os import sys import cv2 import imutils import numpy as np from tqdm import tqdm from enum import Enum from math import sqrt from time import time # Define a custom ENUM to specify which text-extraction function should be executed # later on on the last step of the pipeline class FTYPE(Enum): ALL = 0 E...
[ "cv2.GaussianBlur", "os.mkdir", "cv2.bitwise_and", "cv2.medianBlur", "numpy.ones", "cv2.rectangle", "cv2.normalize", "cv2.absdiff", "cv2.imshow", "cv2.inRange", "os.path.join", "cv2.cvtColor", "cv2.copyMakeBorder", "cv2.split", "cv2.drawContours", "cv2.boundingRect", "cv2.resize", ...
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import os import time import numpy as np import random import torch import math from behavenet.data.utils import build_data_generator from behavenet.fitting.eval import export_train_plots from behavenet.fitting.hyperparam_utils import get_all_params from behavenet.fitting.hyperparam_utils import get_slurm_params from ...
[ "numpy.random.uniform", "behavenet.models.aes.load_pretrained_ae", "random.randint", "os.path.join", "torch.manual_seed", "behavenet.fitting.training.fit", "behavenet.fitting.hyperparam_utils.get_all_params", "behavenet.fitting.eval.export_train_plots", "torch.get_rng_state", "behavenet.models.Cus...
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import numpy as np import pytest @pytest.fixture def simulate(): np.random.seed(0) l = np.random.normal(size=(100, 3)) f = np.random.normal(size=(3, 200)) eta = l.dot(f) eta *= 5 / eta.max() x = np.random.poisson(lam=np.exp(eta)) return x, eta @pytest.fixture def simulate_lam_low_rank(): np.random.see...
[ "numpy.exp", "numpy.random.seed", "numpy.random.poisson", "numpy.random.normal" ]
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""" sklearn extend のテストコード """ import os import numpy as np import pytest from lightgbm import LGBMClassifier from sklearn.linear_model import Ridge, Lasso, LassoCV, RidgeClassifierCV from sklearn.utils.validation import NotFittedError from xgboost import XGBClassifier from vivid.sklearn_extend import UtilityTransfor...
[ "numpy.random.uniform", "os.path.join", "pytest.fixture", "joblib.dump", "pytest.raises", "numpy.array", "numpy.array_equal", "pytest.mark.parametrize", "joblib.load", "vivid.sklearn_extend.PrePostProcessModel", "vivid.sklearn_extend.UtilityTransform" ]
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import matplotlib.cm as cm import matplotlib.pyplot as plt import numpy as np def gen_color_map(keys): colors = cm.rainbow(np.linspace(0, 1, len(keys))) return dict(zip(keys, colors)) def visualize_dataset_2d(x1, x2, ys, alpha=0.5, x1_label='', x2_label='', loc='upper left', figsize=(...
[ "matplotlib.pyplot.tight_layout", "matplotlib.rc", "matplotlib.pyplot.xlim", "matplotlib.pyplot.show", "numpy.argmax", "matplotlib.pyplot.ylim", "matplotlib.pyplot.scatter", "matplotlib.pyplot.legend", "numpy.logical_not", "matplotlib.rcdefaults", "matplotlib.pyplot.figure", "matplotlib.pyplot...
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from tetris import Tetris import gym from gym import error, spaces, utils from gym.utils import seeding from gym import spaces from gym.envs.toy_text import discrete import numpy as np class TetrisEnv(discrete.DiscreteEnv): metadata = {'render.modes': ['human']} def __init__(self): self.t = Tetris() state_n...
[ "tetris.Tetris", "gym.spaces.Discrete", "numpy.zeros", "numpy.array", "gym.utils.seeding.np_random" ]
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import matplotlib.pyplot as plt import numpy as np import math n = np.linspace(2, 7) plt.plot(n, n**3, label="n**3") plt.plot(n, n**0.3, label="n**0.3") plt.plot(n, n, label="n") plt.plot(n, np.sqrt(n), label="sqrtn") plt.plot(n, (n ** 2) / np.sqrt(n), label="(n ** 2) / np.sqrt(n)") plt.plot(n, n ** 2, label="n **2") ...
[ "matplotlib.pyplot.show", "numpy.log", "matplotlib.pyplot.plot", "numpy.log2", "matplotlib.pyplot.legend", "numpy.linspace", "numpy.sqrt" ]
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import h5py import pickle import numpy as np from torch.utils.data import Dataset from sklearn.model_selection import train_test_split class ExpressionDataset(Dataset): ''' Gene expression dataset capable of using subsets of inputs. Args: data: array of inputs with size (samples, dim). labels...
[ "h5py.File", "pickle.dump", "numpy.random.seed", "sklearn.model_selection.train_test_split", "numpy.sort", "pickle.load", "numpy.arange", "numpy.random.choice", "numpy.unique" ]
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import torch import torch.nn as nn import torch.optim as optim import torch.nn.functional as F import torch.backends.cudnn as cudnn import torchvision import torchvision.transforms as transforms from weights_init import weight_init import os import argparse from datetime import datetime import matplotlib.pyplot as...
[ "torch.nn.Dropout", "numpy.sum", "torch.argmax", "torch.cat", "torchvision.transforms.Normalize", "torch.no_grad", "numpy.set_printoptions", "torch.utils.data.DataLoader", "torch.load", "torch.set_printoptions", "torch.Tensor", "torch.nn.Linear", "torch.zeros", "torch.nn.AvgPool2d", "tor...
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""" Copyright 2020 The OneFlow Authors. All rights reserved. Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agr...
[ "oneflow.config.machine_num", "oneflow.serving.InferenceSession", "oneflow.typing.Numpy.Placeholder", "numpy.allclose", "oneflow.clear_default_session", "oneflow.config.cpu_device_num", "oneflow.unittest.skip_unless_1n1d", "shutil.rmtree", "unittest.main", "oneflow.transpose", "os.path.exists", ...
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# # This file is part of seirmo (https://github.com/SABS-R3-Epidemiology/seirmo/) # which is released under the BSD 3-clause license. See accompanying LICENSE.md # for copyright notice and full license details. # import numpy as np from scipy.integrate import solve_ivp import seirmo class DeterministicSEIRModel(sei...
[ "seirmo.SEIROutputCollector", "seirmo.SEIRParameters", "numpy.vstack" ]
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# Dev Note: # Log Finished. # early stop Finished. # Autosave Finished. # Learning rate decay # Warm start # Parameters regularization import io import os import logging from datetime import datetime import numpy as np import torch import torch.nn as nn import torch.nn.functional as F import torch.optim as optim fro...
[ "io.StringIO", "logging.error", "os.makedirs", "logging.basicConfig", "os.path.join", "os.path.isdir", "torch.manual_seed", "torch.nn.utils.clip_grad_norm", "torch.nn.functional.cross_entropy", "torch.save", "logging.info", "torch.cuda.is_available", "numpy.exp", "torch.device", "datetim...
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''' Helper functions to work with matrices ''' import numpy as np def random_unique_permutations(num_permutations, permutation_size): '''Returns a set of randomly chosen unique permutations Example: array([[3, 1, 2, 0], [1, 2, 0, 3], [2, 0, 3, 1]]) References: *...
[ "numpy.random.rand" ]
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import collections import numpy as np import pandas as pd from sklearn.neighbors import KDTree from sklearn.externals.joblib import Parallel, delayed train = pd.read_csv('../input/training.txt', header=None, names=['id', 'type']) test = pd.read_csv('../input/testing.txt', header=None, names=['id']) type_to_idx = {t:...
[ "sklearn.externals.joblib.Parallel", "sklearn.externals.joblib.delayed", "pandas.read_csv", "numpy.hstack", "collections.OrderedDict", "sklearn.neighbors.KDTree", "pandas.concat" ]
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#!/usr/bin/env python # coding: utf-8 # this kernel was based https://www.kaggle.com/corochann/ashrae-training-lgbm-by-meter-type import argparse import gc import os from pathlib import Path import random import sys from tqdm import tqdm_notebook as tqdm import numpy as np import pandas as pd import matplotlib.pypl...
[ "utils.timer", "argparse.ArgumentParser", "utils.add_lag_feature", "sklearn.metrics.mean_squared_error", "numpy.zeros", "pandas.read_feather", "utils.add_holiyday", "utils.reduce_mem_usage", "gc.collect", "pathlib.Path", "numpy.expm1", "pickle.load", "seaborn.distplot", "utils.add_sg", "...
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# Project: AttractionRepulsionModel # Filename: arm_exp.py # Authors: <NAME> (<EMAIL>). """ arm_exp: A framework for defining and running experiments for the Attraction-Repulsion Model. """ import argparse from arm import arm from itertools import product import pickle import math fr...
[ "pickle.dump", "argparse.ArgumentParser", "matplotlib.animation.FuncAnimation", "numpy.random.default_rng", "numpy.shape", "numpy.histogram", "matplotlib.colors.LogNorm", "numpy.arange", "arm.arm", "matplotlib.pyplot.tight_layout", "numpy.meshgrid", "numpy.copy", "matplotlib.pyplot.close", ...
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import importlib from hydroDL import kPath, utils from hydroDL.app import waterQuality from hydroDL.master import basins from hydroDL.data import usgs, gageII, gridMET, ntn from hydroDL.master import slurm from hydroDL.post import axplot, figplot import numpy as np import matplotlib.pyplot as plt import os import panda...
[ "pandas.DataFrame", "json.load", "numpy.datetime64", "pandas.read_csv", "hydroDL.utils.stat.calErr", "numpy.isnan", "hydroDL.master.basins.loadSeq", "numpy.where", "numpy.mean", "os.path.join", "hydroDL.utils.rmNan", "hydroDL.app.waterQuality.readSiteTS" ]
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""" Choosing good features is one of your most important jobs. """ import numpy as np from sklearn.datasets import load_iris from sklearn import tree iris = load_iris() # print(iris.feature_names) # print(iris.target_names) # print(iris.data[:10]) # print(iris.target[:10]) # one of each kind of iris test_indexes =...
[ "sklearn.datasets.load_iris", "numpy.delete", "sklearn.tree.DecisionTreeClassifier" ]
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