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#importing import pandas as pd import os import numpy as np import seaborn as sns import matplotlib.pyplot as plt import argparse import csv ## parsing arguments parser = argparse.ArgumentParser() parser.add_argument("-n", "--nbins", type=int, help="The number of bins to divide each gene into") parser.add_argument("-i...
[ "matplotlib.pyplot.title", "os.mkdir", "argparse.ArgumentParser", "pandas.read_csv", "matplotlib.pyplot.style.use", "matplotlib.pyplot.figure", "numpy.histogram", "os.path.join", "numpy.unique", "csv.DictWriter", "numpy.std", "matplotlib.pyplot.close", "matplotlib.pyplot.semilogy", "matplo...
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import sys import numpy as np import torch import torch.nn as nn class Net(nn.Module): def __init__(self, state, event): super().__init__() self.event = event self.state = state self.fc = nn.Linear(1, 1) self.welford = self.event.Welford() self.state["net"] = self ...
[ "torch.set_printoptions", "numpy.prod", "sys.exit", "torch.nn.Linear" ]
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import tensorflow as tf from config import * from networks import vgg16, FormResNet from ops import sobel import os,csv from PIL import Image import numpy as np from skimage.measure import compare_psnr as psnr from skimage.measure import compare_ssim as ssim from skimage import util class Main: def __init__(self)...
[ "numpy.uint8", "networks.vgg16", "csv.writer", "tensorflow.train.Saver", "numpy.random.shuffle", "ops.sobel", "tensorflow.Session", "numpy.zeros", "numpy.clip", "PIL.Image.open", "tensorflow.placeholder", "networks.FormResNet", "tensorflow.square", "numpy.random.normal", "tensorflow.trai...
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""" This module provides the core object-oriented framework for generating synthetic data sets with clusters. The classes contained here are mainly abstract superclasses. They require subclasses to concretely implement much of the specified functionality. CLASSES AND METHODS ClusterData : top-level object for gen...
[ "numpy.random.seed", "scipy.spatial.distance.mahalanobis", "numpy.mean", "numpy.random.randint", "numpy.arange", "numpy.random.normal", "matplotlib.pyplot.gca", "numpy.sin", "numpy.full", "numpy.std", "numpy.savetxt", "numpy.transpose", "numpy.max", "scipy.stats.ortho_group.rvs", "numpy....
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import os from tqdm import tqdm from datetime import datetime import pandas as pd import numpy as np from scipy.io import wavfile import tensorflow as tf from tensorflow.keras.layers import Conv2D, MaxPool2D, Flatten from tensorflow.keras.layers import LSTM, TimeDistributed from tensorflow.keras.layers import Dropout, ...
[ "numpy.argmax", "pandas.read_csv", "sklearn.model_selection.train_test_split", "tensorflow.keras.layers.Dense", "datetime.datetime.datetime.now", "tensorflow.keras.callbacks.ModelCheckpoint", "scipy.io.wavfile.read", "tensorflow.keras.layers.MaxPool2D", "tensorflow.keras.models.Sequential", "numpy...
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# Author: <NAME> # License: BSD import numpy as np from seglearn.datasets import load_watch from seglearn.base import TS_Data from seglearn import util def test_util(): df = load_watch() data = TS_Data(df['X'], df['side']) Xt, Xc = util.get_ts_data_parts(data) assert np.array_equal(Xc, df['side'])...
[ "seglearn.base.TS_Data", "seglearn.util.check_ts_data", "seglearn.util.ts_stats", "seglearn.util.get_ts_data_parts", "seglearn.datasets.load_watch", "numpy.array_equal" ]
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# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. from typing import Any, Dict, Optional import numpy as np from synthetic_problems import ( Branin1DEmbedding, Branin2DBase, Hartm...
[ "synthetic_problems.Hartmann6DBase", "numpy.arange", "numpy.ones", "synthetic_problems.Branin2DBase" ]
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import random import numpy as np def int_to_bin(number: int, length=8) -> str: b = bin(number)[2:] return ('0' * (-len(b) % length)) + b def bin_to_int(number: str) -> int: return int(number, base=2) def random_string(length=8): return ''.join([chr(random.randint(0, 127)) for _ in range(length)])...
[ "numpy.array", "random.randint", "numpy.prod", "numpy.ravel" ]
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"""Use of Bertran to calculate sparse segments.""" import numpy as np import chaospy as cp def sparse_segment(cords): r""" Create a segment of a sparse grid. Convert a ol-index to sparse grid coordinates on ``[0, 1]^N`` hyper-cube. A sparse grid of order ``D`` coencide with the set of sparse_segments...
[ "numpy.array", "numpy.prod" ]
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import ipinfo import numpy as np import re from rich.console import Console from rich.table import Column, Table import sys import time IPINFO_TOKEN = "<PASSWORD>_TOKEN" def parse_line(line: str): regex = r'[0-9]{4}-[0-9]{2}-[0-9]{2}T[0-9]{2}:[0-9]{2}:[0-9]{2}.[0-9]{3}Z CLOSE host=([a-zA-Z0-9]{0,4}:[a-zA-Z0-9]{...
[ "numpy.median", "numpy.std", "numpy.mean", "rich.console.Console", "re.search", "rich.table.Table", "ipinfo.getHandler" ]
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import numpy as np from utils.distributions import bernoulli # ---------------------------------------------------------------------------------------------------------------------- class Recombination(object): def __init__(self): pass def recombination(self, x): pass # --------------------...
[ "numpy.random.permutation", "numpy.arange", "utils.distributions.bernoulli", "numpy.clip" ]
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from __future__ import annotations from typing import Optional import numpy as np from .transformation import Transformation class TransformationWithCovariance(Transformation): """Light weight transformation class with added covariance propagation.""" def __init__(self, *, tran_w_...
[ "numpy.zeros_like", "numpy.zeros" ]
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# <NAME> # 17CS30033 # The functions are written in the order of the questions and solution to, for example 1a is named as _1a_plot import numpy as np import pandas as pd from matplotlib import pyplot as plt from copy import copy import json # loading training data try: train_data = pd.read_csv('train.csv') excep...
[ "pandas.DataFrame", "json.dump", "matplotlib.pyplot.title", "json.load", "matplotlib.pyplot.show", "numpy.sum", "pandas.read_csv", "matplotlib.pyplot.scatter", "numpy.power", "numpy.zeros", "numpy.ones", "copy.copy", "numpy.array", "numpy.dot", "matplotlib.pyplot.ylabel", "matplotlib.p...
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import h5py from tqdm import tqdm import librosa import numpy as np from keras.utils.np_utils import to_categorical from sklearn.utils import shuffle import cv2 import torch germanBats = { "Rhinolophus ferrumequinum": 0, "Rhinolophus hipposideros": 1, "Myotis daubentonii": 2, "Myotis brandtii": 3, ...
[ "h5py.File", "librosa.util.peak_pick", "numpy.asarray", "numpy.mean", "sklearn.utils.shuffle", "cv2.resize" ]
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# 隐马尔可夫模型 # 2020/09/27 import re import jieba import numpy as np def trainParameter(filename): """ 依据训练文本统计 PI, A, B :param filename: 训练文本 :return: 模型参数 """ statusDict = {'B': 0, 'M': 1, 'E': 2, 'S': 3} # 初始化模型参数 PI = np.zeros(4) A = np.zeros((4, 4)) B = np.z...
[ "jieba.cut", "numpy.log", "numpy.zeros", "numpy.sum" ]
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import threading import tensorflow as tf from tensorflow import keras from tensorflow.keras import models import cv2 import numpy as np import matplotlib.pyplot as plt import math import random import tkinter as tk ##### Input trainned model ##### model = keras.models.load_model('mnist_model1.h5') model2 ...
[ "tkinter.StringVar", "cv2.GaussianBlur", "tkinter.Text", "cv2.erode", "tkinter.Label", "cv2.dilate", "tkinter.Button", "cv2.cvtColor", "matplotlib.pyplot.imshow", "tkinter.Entry", "cv2.imwrite", "numpy.reshape", "tkinter.Tk", "cv2.resize", "cv2.Canny", "tensorflow.keras.models.load_mod...
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# Copyright 2021 <NAME> # SPDX-License-Identifier: Apache-2.0 'colorex numpy' import numpy as np from colorex.cex_constants import ( REC_709_LUMA_WEIGHTS, MAX_COMPONENT_VALUE, SMALL_COMPONENT_VALUE, M_RGB_TO_XYZ_T, M_XYZ_TO_RGB_T, D50_TO_D65_T, ) def gamma_correct(values, gamma): 'apply a g...
[ "numpy.stack", "numpy.power", "numpy.matmul", "numpy.clip" ]
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#!/usr/bin/env python import sys from cvangysel import argparse_utils, logging_utils, sklearn_utils, trec_utils from sert import inference, math_utils, models import argparse import collections import io import logging import numpy as np import os import operator import pickle import scipy import scipy.spatial impor...
[ "numpy.sum", "argparse.ArgumentParser", "collections.defaultdict", "numpy.argsort", "pickle.load", "numpy.linalg.norm", "logging.error", "logging.warning", "cvangysel.trec_utils.write_run", "cvangysel.sklearn_utils.neighbors_algorithm", "scipy.spatial.distance.cdist", "os.path.basename", "cv...
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import numpy as np rslt_binomial_0 = np.array([0, 6.618737, 0.004032037, 0.01433665, 0.01265635, 0.006173346, 0.01067706]) rslt_binomial_1 = np.array([0, 1.029661, 0.02180239, 0.07769613, 0.06756466, 0.03156418, 0.05851878]) rslt_binomial_2 = np.array([0, 0.160...
[ "numpy.array" ]
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import matplotlib.patches as mpatches from nilearn import plotting, image, datasets from nilearn.input_data import NiftiSpheresMasker from nilearn.connectome import ConnectivityMeasure import numpy as np import pandas as pd from common.paths import POWER POWER_NUM_NODES = 264 POWER_DATASET = datasets.fetch_coords_pow...
[ "nilearn.connectome.ConnectivityMeasure", "pandas.read_csv", "nilearn.input_data.NiftiSpheresMasker", "nilearn.datasets.fetch_coords_power_2011", "numpy.zeros", "numpy.triu_indices", "numpy.array", "numpy.triu_indices_from", "matplotlib.patches.Patch", "numpy.vstack" ]
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""" Unit tests for PowerExpansion class """ __author__ = '<NAME>' import unittest import numpy as np from scipy.special import sph_harm import onsager.PowerExpansion as PE T3D = PE.Taylor3D T2D = PE.Taylor2D class PowerExpansionTests(unittest.TestCase): """Tests to make sure our power expansions are constructed...
[ "scipy.special.sph_harm", "numpy.random.uniform", "numpy.abs", "numpy.tensordot", "numpy.allclose", "numpy.zeros", "numpy.sin", "numpy.array", "numpy.exp", "numpy.linspace", "numpy.cos", "numpy.dot", "numpy.eye", "onsager.PowerExpansion.factorial", "numpy.sqrt" ]
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# -*- coding: utf-8 -*- """ author: <NAME> """ import numpy as np import imageio class MNISTImageReader(): """ brief: read image data from .idx3-ubyte file as numpy array use cases: # case 1 with MNISTImageReader('t10k-images.idx3-ubyte') as reader: # the reader was designed as...
[ "numpy.frombuffer" ]
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""" MIT License Copyright (c) 2019 Chodera lab // Memorial Sloan Kettering Cancer Center, Weill Cornell Medical College, Nicea Research, and Authors Authors: <NAME> Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to de...
[ "tensorflow.keras.layers.Dense", "pandas.read_csv", "sklearn.metrics.r2_score", "tensorflow.reshape", "gin.probabilistic.gn.GraphNet.batch", "numpy.mean", "lime.nets.for_gn.ConcatenateThenFullyConnect", "tensorflow.one_hot", "numpy.std", "tensorflow.concat", "tensorflow.keras.optimizers.Adam", ...
[((1353, 1390), 'pandas.read_csv', 'pd.read_csv', (['"""data/Lipophilicity.csv"""'], {}), "('data/Lipophilicity.csv')\n", (1364, 1390), True, 'import pandas as pd\n'), ((2069, 2130), 'gin.i_o.from_smiles.to_mols_with_attributes', 'gin.i_o.from_smiles.to_mols_with_attributes', (['x_array', 'y_array'], {}), '(x_array, y_...
import sys import os.path sys.path.append(os.path.abspath(os.path.join(os.path.dirname(sys.modules[__name__].__file__), ".."))) import matplotlib.pyplot as plt import numpy as np from sklearn.neighbors import KernelDensity from tensorflow.python.keras.datasets import mnist from data.data_handler import ProcessedNNHan...
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import numpy as np import pysam import utils import pdb MIN_MAP_QUAL = 10 class Genome(): def __init__(self, fasta_filename, map_filename): self._seq_handle = pysam.FastaFile(fasta_filename) self._map_handles = [pysam.TabixFile(map_filename+'_%d.gz'%r) for r in utils...
[ "pysam.FastaFile", "pysam.TabixFile", "numpy.zeros", "utils.make_complement", "numpy.array" ]
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import cv2 import numpy as np from nnga.inference.base_predictor import BasePredictor from nnga.utils.data_manipulation import adjust_image_shape, normalize_image class SegmentationPredictor(BasePredictor): """Image predictor to NNGA models Parameters ---------- model_dir : {str} Path...
[ "cv2.threshold", "nnga.utils.data_manipulation.adjust_image_shape", "numpy.array" ]
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#!/usr/bin/env python3 # -*- coding: utf-8 -*- import numpy as np from scipy.interpolate import interp1d from scipy.signal import find_peaks, peak_widths ALLOWED_STATISTICS = ["n_spikes", "spike_rate", "latency_to_first_spike", "average_AP_overshoot", ...
[ "numpy.sum", "numpy.abs", "matplotlib.pyplot.figure", "scipy.signal.find_peaks", "numpy.mean", "matplotlib.pyplot.hlines", "scipy.signal.peak_widths", "numpy.max", "matplotlib.pyplot.rcParams.update", "matplotlib.pyplot.rc", "matplotlib.ticker.FormatStrFormatter", "seaborn.set", "seaborn.set...
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import numpy as np lin = open("__21_d25.txt").read().splitlines(); gm = np.array([list(line) for line in lin]) def st(hN, gm): tM = gm == hN; gS = np.roll(gm, -1, 1 if hN == ">" else 0) tM[gS != '.'] = False; gm[tM] = '.'; tS = np.roll(tM, 1, 1 if hN == ">" else 0) gm[tS] = hN; return len(gm[tM]) count = 1 while ...
[ "numpy.roll" ]
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"""A domain for real-world experiments.""" import time from itertools import combinations from pathlib import Path from typing import Tuple, Union from inquire.environments.gym_wrapper_environment import Environment from inquire.interactions.feedback import Trajectory from numba import jit import numpy as np import...
[ "numpy.sum", "numpy.empty", "numpy.random.default_rng", "numpy.sin", "numpy.linalg.norm", "numpy.exp", "numpy.append", "numpy.linspace", "time.perf_counter", "itertools.combinations", "numpy.cos", "numpy.argwhere", "numpy.random.uniform", "numpy.zeros", "numpy.where", "numba.jit", "n...
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"""grid_world.py A simple grid world environment. Edges of the map are treated like obstacles Map must be a image file whose values represent free (255, white), occupied (0, black). """ from __future__ import print_function, absolute_import, division import cv2 import numpy as np from bc_exploration.mapping.costmap i...
[ "numpy.zeros_like", "bc_exploration.utilities.util.xy_to_rc", "numpy.concatenate", "cv2.cvtColor", "cv2.waitKey", "cv2.destroyAllWindows", "cv2.getStructuringElement", "cv2.imread", "numpy.max", "numpy.random.randint", "numpy.array", "bc_exploration.utilities.util.compute_connected_pixels", ...
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from __future__ import print_function import save_novel import tensorflow as tf import os import sys import random import numpy as np import re import MeCab from glob import glob from keras.optimizers import RMSprop from keras.layers import LSTM from keras.layers import Dense from keras.models import Sequential from ke...
[ "sys.stdout.write", "numpy.sum", "numpy.log", "tensorflow.config.experimental.get_memory_growth", "numpy.argmax", "numpy.random.multinomial", "numpy.asarray", "os.path.exists", "tensorflow.config.experimental.set_memory_growth", "keras.callbacks.LambdaCallback", "MeCab.Tagger", "numpy.exp", ...
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import en_core_web_lg import json import pickle import numpy as np import rdflib class FoodEmbeddingSims: def run(self, *, spacy_savefile = '../data/out/spacy_ing_sim.pkl', w2v_savefile = '../data/out/w2v_ing_sim.pkl', substitution_data_file = '../data/in/foodsubs_data.json', ...
[ "pickle.dump", "rdflib.Graph", "json.load", "numpy.multiply", "numpy.sum", "rdflib.URIRef", "en_core_web_lg.load", "numpy.mean", "numpy.array", "gensim.models.KeyedVectors.load_word2vec_format" ]
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import os from numpy.testing import assert_allclose, assert_equal from astropy.io import fits import shutil import numpy as np def spectrum_answer_testing(spec, filename, answer_store, answer_dir): testfile = os.path.join(answer_dir, filename) if answer_store: spec.write_h5_file(testfile, overwrite=Tr...
[ "astropy.io.fits.open", "numpy.testing.assert_equal", "shutil.copy", "numpy.testing.assert_allclose", "os.path.join", "numpy.issubdtype" ]
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# An example of using a tensorflow custom core estimator with contrib predictor for increased inference performance. # Attempts to use up-to-date best practice for tensorflow development and keep dependencies to a minimum. # Performs a regression using a deep neural network where the number of inputs and outputs can ...
[ "numpy.full", "tensorflow.estimator.export.PredictOutput", "tensorflow.train.get_global_step", "tensorflow.losses.mean_squared_error", "tensorflow.estimator.export.ServingInputReceiver", "tensorflow.layers.dense", "tensorflow.train.AdagradOptimizer", "numpy.float32", "time.clock", "tensorflow.laye...
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from covariance import Covariance import numpy as np from scipy.special import gamma """Covariance run 1: COSMOS-like with no lensing fields""" # Generate non-fit parameters. # .. These values should be motivated to reflect actual data # .. Postage stamp size Nx = 150 Ny = 150 # .. Standard galaxy size (in pixels) a...
[ "scipy.special.gamma", "numpy.array", "numpy.sqrt" ]
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from behaviour_cloning import * import tensorflow as tf import pickle import mujoco_py import gym import numpy as np def main(): observations, actions = process_expert_data("Humanoid-v2") comp_returns= np.zeros(shape=(20,20)) comp_avg_return=[] for i in range (20): train_model(observations, act...
[ "numpy.zeros", "numpy.concatenate" ]
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#!/usr/bin/env python3 ''' <NAME>, <EMAIL> 2020/05/23 Python code to read the sensor data from the Silicon Labs Thunderboard Sense2 command-line input parameters: --time [seconds] --sensor outputs: CSV of all sensor data plot of all specific sensor v0.1 : inital version ''' import serial import datetime im...
[ "serial.Serial", "matplotlib.pyplot.show", "argparse.ArgumentParser", "matplotlib.pyplot.ioff", "serial.tools.list_ports.comports", "matplotlib.pyplot.subplots", "time.sleep", "datetime.datetime", "numpy.append", "matplotlib.pyplot.style.use", "datetime.datetime.utcnow", "numpy.array", "plat...
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import fridge.utilities.mcnpCreatorFunctions as MCF import numpy as np def test_getRCC(): surfaceCard = MCF.getRCC(0.5, 10, [0.0, 0.0, 0.5555555], 1, '$ Comment') surfaceCardKnown = '1 RCC 0.0 0.0 0.55556 0 0 10 0.5 $ Comment' assert surfaceCard == surfaceCardKnown def test_getRHP(): surfaceCard = M...
[ "fridge.utilities.mcnpCreatorFunctions.getCoolantWireWrapSmear", "fridge.utilities.mcnpCreatorFunctions.getRHP", "fridge.utilities.mcnpCreatorFunctions.getSmearedMaterial", "fridge.utilities.mcnpCreatorFunctions.getOutsideCell", "fridge.utilities.mcnpCreatorFunctions.getAssemblyUniverseCell", "fridge.util...
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import numpy as np import matplotlib.pyplot as plt def threshold_convolved_image(convolved_image): tci = np.copy(convolved_image) for i in range(3): m = np.mean(convolved_image[:, :, i]) s = np.std(convolved_image[:, :, i]) thr = m tci[convolved_image[:, :, i] < thr, i] = 0 ...
[ "matplotlib.pyplot.subplot", "numpy.load", "matplotlib.pyplot.show", "numpy.sum", "numpy.copy", "numpy.std", "matplotlib.pyplot.imshow", "matplotlib.pyplot.figure", "numpy.mean" ]
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import copy import warnings from keras import backend as K from keras import activations, regularizers from keras.engine import InputSpec from keras.layers import Recurrent import numpy as np from ...data.instances.text_classification.logical_form_instance import SHIFT_OP, REDUCE2_OP, REDUCE3_OP class TreeCompositi...
[ "keras.backend.dot", "copy.deepcopy", "keras.backend.concatenate", "keras.activations.get", "keras.regularizers.get", "keras.backend.zeros_like", "keras.backend.sum", "numpy.zeros", "keras.backend.equal", "keras.backend.tile", "keras.engine.InputSpec", "warnings.warn", "keras.backend.permute...
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#!/usr/bin/env python # -*- coding: utf-8 -*- '''checkplotserver_handlers.py - <NAME> (<EMAIL>) - Jan 2017 These are Tornado handlers for serving checkplots and operating on them. ''' #################### ## SYSTEM IMPORTS ## #################### import os import os.path import gzi...
[ "os.remove", "base64.b64decode", "numpy.full_like", "json.loads", "os.path.dirname", "numpy.logical_not", "os.path.exists", "numpy.isfinite", "json.JSONEncoder.default", "json.dump", "io.BytesIO", "os.path.basename", "numpy.min", "tornado.escape.xhtml_escape", "time.time", "numpy.any",...
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# Newton-Raphson method for orbit calculations using numpy arrays; from numpy import linspace, abs, sqrt, sin, cos, arctan2, array, pi def orbit(m0, e, a, inclination, ascension, n, acc=1.e-2): m = linspace(m0, 2 * pi + m0, n) ecc_anom = m ecc_anom_old = 0 while acc < abs(ecc_anom - ecc_anom_old).max(...
[ "numpy.abs", "numpy.sin", "numpy.array", "numpy.linspace", "numpy.cos", "numpy.sqrt" ]
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# -*- encoding: utf-8 -*- # Copyright (c) 2020 <NAME> <<EMAIL>> # ISC License <https://choosealicense.com/licenses/isc> """Contains some common necessary frame transformation helper methods. These transformation methods are useful for optimizing face detection in frames. Typically face detection takes much longer the...
[ "numpy.abs", "cv2.cvtColor", "numpy.float32", "cv2.warpAffine", "cv2.convertScaleAbs", "cv2.flip", "cv2.getRotationMatrix2D", "cv2.resize" ]
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#This code comes from: https://github.com/becomequantum/kryon from PIL import Image,ImageDraw,ImageFont import numpy as np #This code is only about animation. 本代码只是和做演示动画相关. VideoSize = (1280, 720) DemoImageSize = (48, 36) 标题位置 = (60, 16) 注释1位置 = (1000, 76) 网格位置 = (32, 76) 比例 = 17 网格颜色 = (230, 230, 230) 网三位置...
[ "PIL.ImageFont.truetype", "PIL.ImageDraw.Draw", "PIL.Image.new", "numpy.array" ]
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import matplotlib.pyplot as plt import matplotlib.gridspec as gridspec import librosa import librosa.display import numpy as np def summary(x): if x.ndim == 1: SUM = ('\n{0:>10s}: {1:>15.4f}').format('min', np.amin(x)) SUM += ('\n{0:>10s}: {1:>15.4f}').format('1st Quar', np.percentile(x, 25)) SUM += ('\n{0:>10s...
[ "matplotlib.pyplot.title", "matplotlib.pyplot.xlim", "matplotlib.pyplot.subplot", "matplotlib.pyplot.show", "numpy.amin", "matplotlib.pyplot.plot", "matplotlib.pyplot.ylim", "numpy.median", "numpy.std", "matplotlib.pyplot.colorbar", "numpy.percentile", "numpy.amax", "matplotlib.pyplot.figure...
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import sys import os from datetime import datetime import traceback import time from pathlib import Path import h5py import pickle import nept import scipy import numpy as np import pandas as pd from fooof import FOOOF # cwd = Path(os.getcwd()) # pkg_dir = cwd.parent # sys.path.append(str(pkg_dir)) import Utils.rob...
[ "pickle.dump", "numpy.sum", "scipy.signal.welch", "numpy.abs", "numpy.argmax", "numpy.empty", "matplotlib.pyplot.subplot2grid", "numpy.floor", "numpy.ones", "numpy.around", "pathlib.Path", "matplotlib.pyplot.figure", "numpy.arange", "numpy.histogram", "sys.exc_info", "numpy.mean", "p...
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""" Wisconsin Autonomous - https://www.wisconsinautonomous.org Copyright (c) 2021 wisconsinautonomous.org All rights reserved. Use of this source code is governed by a BSD-style license that can be found in the LICENSE file at the top level of the repo """ from abc import abstractmethod # Abstract Base Class # WA ...
[ "wa_simulator.utils._load_json", "wa_simulator.core.WAVector", "wa_simulator.utils._WAStaticAttribute", "wa_simulator.core.WAQuaternion.from_z_rotation", "numpy.clip", "numpy.sin", "numpy.tan", "numpy.cos", "numpy.interp" ]
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# Copyright 2021 The Petuum Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable...
[ "unittest.main", "texar.torch.data.data.data_iterators.DataIterator", "iu_xray_data.IU_XRay_Dataset", "numpy.sum", "numpy.ones_like", "evaluation_metrics.HammingLoss", "evaluation_metrics.MultiLabelF1", "numpy.zeros", "models.cv_model.MLCTrainer", "sklearn.metrics.roc_auc_score", "evaluation_met...
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# -*- encoding:utf-8 -*- """ 选股示例因子:价格选股因子 """ from __future__ import absolute_import from __future__ import division from __future__ import print_function import numpy as np from .ABuPickStockBase import AbuPickStockBase, reversed_result from ..TLineBu.ABuTL import AbuTLine from ..CoreBu.ABuEnv import EMarketDat...
[ "numpy.array" ]
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import matplotlib.pyplot as plt import numpy as np import cv2 from os import path from math import floor import os cwd = os.getcwd() dirname = path.join(cwd, path.dirname(__file__)) class DIP: def bilinear_insert(self, img, gain_x=1.5, gain_y=1.5): H, W, C = img.shape gain_h = round(H*gain_x) ...
[ "os.getcwd", "os.path.dirname", "os.path.join", "numpy.arange" ]
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import os import cv2 import numpy as np from keras.utils import np_utils from keras.models import Sequential from keras.layers import Dense, Conv2D, MaxPooling2D, Flatten, Dropout from sklearn.model_selection import train_test_split X = [] y = [] data_path = "./data" for number in os.listdir(data_path): for img_n...
[ "cv2.cvtColor", "sklearn.model_selection.train_test_split", "numpy.asarray", "keras.layers.MaxPooling2D", "keras.layers.Dropout", "keras.layers.Flatten", "keras.utils.np_utils.to_categorical", "keras.layers.Dense", "keras.layers.Conv2D", "keras.models.Sequential", "os.path.join", "os.listdir" ...
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from zenoh_service.core.zenoh_net import ZenohNet from zenoh_service.zenoh_net_publisher import ZenohNetPublisher import sys import time from datetime import datetime import numpy as np import cv2 import simplejson as json from enum import Enum import logging import argparse # from hurry.filesize import size as fsize f...
[ "cv2.resize", "argparse.ArgumentParser", "cv2.waitKey", "nanocamera.Camera", "cv2.imshow", "logging.getLogger", "time.time", "cv2.VideoCapture", "pycore.extras.functions.humanbytes", "cv2.imencode", "numpy.vstack", "cv2.resizeWindow", "cv2.destroyAllWindows", "datetime.datetime.now", "ze...
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import numpy as np from vec_io import fvecs_read from sorter import parallel_sort from lsh import SRP from transform import spherical_transform, simple_lsh def intersect(gs, ids): rc = np.mean([ len(np.intersect1d(g, list(id))) for g, id in zip(gs, ids)]) return rc def recalls(index, q_, gt)...
[ "numpy.random.uniform", "numpy.random.seed", "sorter.parallel_sort", "vec_io.fvecs_read", "transform.spherical_transform", "numpy.linalg.norm", "lsh.SRP" ]
[((1078, 1096), 'vec_io.fvecs_read', 'fvecs_read', (['x_path'], {}), '(x_path)\n', (1088, 1096), False, 'from vec_io import fvecs_read\n'), ((1208, 1227), 'numpy.random.seed', 'np.random.seed', (['(808)'], {}), '(808)\n', (1222, 1227), True, 'import numpy as np\n'), ((1236, 1261), 'numpy.random.uniform', 'np.random.uni...
# -*- coding: utf-8 -*- """ Create my own style of colorbar """ __title__ = "Replace Hex Colors" __author__ = "<NAME>" __version__ = "1.1(19.02.2018)" __email__ = "<EMAIL>" #============================================================================== # modules import numpy as np import matplotlib ...
[ "ipdb.set_trace", "matplotlib.colors.BoundaryNorm", "numpy.array", "numpy.arange", "matplotlib.colors.ListedColormap" ]
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#!/usr/bin/env python3 # Copyright (c) Facebook, Inc. and its affiliates. All Rights Reserved import json import random from typing import List, Optional, Tuple import cv2 import numpy as np import torchvision.transforms as T from detectron2.config import CfgNode from detectron2.data.transforms import Transform, Tra...
[ "json.loads", "numpy.amin", "random.uniform", "numpy.ceil", "numpy.float32", "numpy.ones", "detectron2.data.transforms.NoOpTransform", "torchvision.transforms.functional._get_inverse_affine_matrix", "numpy.amax", "numpy.linalg.inv", "cv2.getAffineTransform", "numpy.array", "numpy.random.choi...
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import logging import warnings import numpy as np import pandas as pd from scipy import integrate, stats from scipy.interpolate import InterpolatedUnivariateSpline from .util import log_err_func def cal_chi_square(f_hat_array, f_array): chi_square = np.sum((f_hat_array - f_array) ** 2 / f_hat_array) return...
[ "numpy.zeros_like", "numpy.sum", "scipy.interpolate.InterpolatedUnivariateSpline", "numpy.log", "warnings.filterwarnings", "numpy.ones_like", "numpy.polyval", "scipy.stats.gaussian_kde", "numpy.isfinite", "logging.info", "numpy.arange", "numpy.sqrt" ]
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#!/usr/bin/env python """ A simple python script for parsing CASTEP (http://www.castep.org/) output files especially for ELNES calculations. This includes some functions for reading .cell, .castep, .bands, and .eels_mat files, calculating excitation energy, and forming core-loss spectra with Gaussian smearing. Copyri...
[ "numpy.abs", "numpy.array", "numpy.exp", "numpy.sqrt", "os.path.join", "numpy.prod", "re.compile" ]
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# Copyright The PyTorch Lightning team. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to i...
[ "flash.data.data_utils.labels_from_categorical_csv", "pathlib.Path", "flash.vision.ImageClassificationData.from_folders", "numpy.random.randint", "os.path.splitext", "torch.rand", "flash.vision.ImageClassificationData.from_filepaths", "os.path.join", "torchvision.transforms.ToTensor" ]
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# -*- coding: utf8 -*- # # Module ELEMENT # # Part of Nutils: open source numerical utilities for Python. Jointly developed # by HvZ Computational Engineering, TU/e Multiscale Engineering Fluid Dynamics, # and others. More info at http://nutils.org <<EMAIL>>. (c) 2014 """ The transform module. """ from __future__ imp...
[ "numpy.eye", "numpy.asarray", "numpy.where", "numpy.take", "numpy.linalg.inv", "numpy.array", "numpy.dot", "numpy.all" ]
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#!/usr/bin/env python import argparse import numpy as np import pandas as pd from scipy import linalg from tqdm import tqdm import os import logging def get_args(): parser = argparse.ArgumentParser(description="calculate splicing scores per gene/cell") parser.add_argument("--input", help="Name of the input file...
[ "pandas.DataFrame", "logging.exception", "argparse.ArgumentParser", "logging.basicConfig", "numpy.square", "numpy.transpose", "logging.info", "scipy.linalg.svd", "pandas.read_parquet", "pandas.Series" ]
[((180, 258), 'argparse.ArgumentParser', 'argparse.ArgumentParser', ([], {'description': '"""calculate splicing scores per gene/cell"""'}), "(description='calculate splicing scores per gene/cell')\n", (203, 258), False, 'import argparse\n'), ((1029, 1184), 'logging.basicConfig', 'logging.basicConfig', ([], {'filename':...
# -*- coding: utf-8 -*- import numpy as np from . import utils def bias(predicted, reference): """ Calculate the bias between PREDICTED and REFERENCE. B = mean(p) - mean(r) where p is the predicted values, and r is the reference values. Note that p & r must have the same number of values. ...
[ "numpy.mean" ]
[((727, 745), 'numpy.mean', 'np.mean', (['predicted'], {}), '(predicted)\n', (734, 745), True, 'import numpy as np\n'), ((748, 766), 'numpy.mean', 'np.mean', (['reference'], {}), '(reference)\n', (755, 766), True, 'import numpy as np\n')]
"""Module for base class of Circle and Sphere.""" import numpy as np from skspatial._functions import _contains_point from skspatial.objects._base_spatial import _BaseSpatial from skspatial.objects.point import Point from skspatial.objects.vector import Vector from skspatial.typing import array_like class _BaseSpher...
[ "numpy.array_repr", "skspatial.objects.point.Point", "skspatial._functions._contains_point", "skspatial.objects.vector.Vector.from_points" ]
[((558, 570), 'skspatial.objects.point.Point', 'Point', (['point'], {}), '(point)\n', (563, 570), False, 'from skspatial.objects.point import Point\n'), ((743, 768), 'numpy.array_repr', 'np.array_repr', (['self.point'], {}), '(self.point)\n', (756, 768), True, 'import numpy as np\n'), ((1241, 1279), 'skspatial._functio...
import numpy import openmm import openmm.app import openmm.unit import qm3 import qm3.engines.openmm import qm3.engines.xtb import qm3.utils import qm3.utils.hessian import qm3.actions.minimize import sys import os cwd = os.path.abspath( os.path.dirname( sys.argv[0] ) ) + os.sep mol = qm3.molecule() mol.p...
[ "qm3.engines.xtb.run", "qm3.utils.hessian.numerical", "qm3.utils.hessian.frequencies", "qm3.utils.RT_modes", "os.path.dirname", "numpy.logical_not", "qm3.molecule", "qm3.utils.hessian.manage", "qm3.actions.minimize.baker", "openmm.app.charmmparameterset.CharmmParameterSet", "numpy.array", "ope...
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import numpy as np import tensorflow as tf from tensorflow.keras import Input, Model from tensorflow.keras.layers import Dense units = 4 enc = np.random.rand(4, 16, 32).reshape(4, -1, 32).astype('float32') dec = np.random.rand(4, 32).reshape(4, 1, 32).astype('float32') enc_h = Input(shape=(None, 32)) dec_h = Input(s...
[ "tensorflow.nn.softmax", "tensorflow.reduce_sum", "tensorflow.nn.tanh", "tensorflow.keras.layers.Dense", "tensorflow.keras.Input", "tensorflow.keras.Model", "numpy.random.rand" ]
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import numpy as np import matplotlib.pyplot as plt from scipy.interpolate import interp1d import scipy.integrate as integrate plt.close('all') # ------ defining constants ----- # # -- using mks for convenience -- # c = 2.998e8 # m / s h = 6.626e-34 # m^s * kg / s k = 1.31e-23 # J / K b = 2.898e-3 # m * K # ------ FU...
[ "matplotlib.pyplot.xlim", "matplotlib.pyplot.plot", "matplotlib.pyplot.ylim", "matplotlib.pyplot.gca", "matplotlib.pyplot.close", "numpy.asarray", "matplotlib.pyplot.legend", "matplotlib.pyplot.figure", "numpy.arange", "numpy.loadtxt", "numpy.exp", "scipy.integrate.trapz", "matplotlib.pyplot...
[((127, 143), 'matplotlib.pyplot.close', 'plt.close', (['"""all"""'], {}), "('all')\n", (136, 143), True, 'import matplotlib.pyplot as plt\n'), ((732, 771), 'numpy.loadtxt', 'np.loadtxt', (['"""UBV_ma06.txt"""'], {'skiprows': '(17)'}), "('UBV_ma06.txt', skiprows=17)\n", (742, 771), True, 'import numpy as np\n'), ((944,...
import numpy as np import matplotlib.pyplot as plt c = 0.2 g = lambda x: 1 if x > 1.0 else 0 R = 0.005 eta1 = lambda w, rho: -R*g(rho)*np.heaviside(w, 0) eta2 = lambda w, rho: -R*g(rho)*np.heaviside(w, 0) fa = lambda a, b, w1: w1*(a - a*b) fb = lambda a, b, w2: -w2*(b - a*b) def evolve( T, a0, b0, w1_0, w2_0 ): ...
[ "numpy.heaviside", "matplotlib.pyplot.show", "numpy.zeros", "matplotlib.pyplot.subplots", "matplotlib.pyplot.grid" ]
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# -*- coding: utf-8 -*- """ Created on Tue Aug 27 16:12:58 2019 @author: LKK """ import numpy as np from sys import getsizeof import time import copy def dominate (record1, record2) : result = record1.att - record2.att if np.all(result>=0) : return 1 #record dominate target if np.all(result...
[ "copy.deepcopy", "sys.getsizeof", "numpy.all", "time.time" ]
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import multiprocessing import tensorflow as tf import numpy as np print("version de tensorflow:", tf.__version__) from tensorflow.examples.tutorials.mnist import input_data mnist = input_data.read_data_sets('MNIST_data', one_hot=True) import matplotlib.pyplot as plt # Los Ejemplos de entrenamiento estan en: # mnist...
[ "PIL.Image.new", "numpy.argmax", "tensorflow.ConfigProto", "tensorflow.matmul", "tensorflow.truncated_normal", "multiprocessing.cpu_count", "tensorflow.nn.softmax", "tensorflow.nn.relu", "tensorflow.nn.softmax_cross_entropy_with_logits", "tensorflow.placeholder", "matplotlib.pyplot.show", "ten...
[((183, 236), 'tensorflow.examples.tutorials.mnist.input_data.read_data_sets', 'input_data.read_data_sets', (['"""MNIST_data"""'], {'one_hot': '(True)'}), "('MNIST_data', one_hot=True)\n", (208, 236), False, 'from tensorflow.examples.tutorials.mnist import input_data\n'), ((2504, 2549), 'tensorflow.placeholder', 'tf.pl...
import pickle from typing import Dict, Union import numpy as np import pandas as pd from sklearn.tree import DecisionTreeClassifier from sklearn.linear_model import LogisticRegression from sklearn.metrics import accuracy_score, f1_score, roc_auc_score SklearnClassifierModel = Union[LogisticRegression, DecisionTreeCl...
[ "pickle.dump", "sklearn.metrics.accuracy_score", "sklearn.metrics.roc_auc_score", "sklearn.metrics.f1_score", "numpy.exp" ]
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import numpy as np import matplotlib.pyplot as plt cfs_to_tafd = 2.29568411*10**-5 * 86400 / 1000 # we'll use the "loadtxt" function from numpy to read the CSV # the delimiter is a comma (other options might be tab or space) # we want to skip the header row and the first (0th) column # In general it's better to use ...
[ "matplotlib.pyplot.show", "matplotlib.pyplot.plot", "matplotlib.pyplot.ylim", "numpy.loadtxt", "matplotlib.pyplot.ylabel", "matplotlib.pyplot.xlabel" ]
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import numpy as np from future._greyreconstruct import reconstruction_loop from skimage.filters._rank_order import rank_order y, x = np.mgrid[:20:0.5, :20:0.5] bumps = np.sin(x) + np.sin(y) h = 0.3 seed = bumps - h mask = bumps assert tuple(seed.shape) == tuple(mask.shape) selem = np.ones([3] * seed.ndim, dtype=boo...
[ "numpy.full", "skimage.filters._rank_order.rank_order", "numpy.sum", "numpy.zeros", "numpy.ones", "numpy.argsort", "numpy.min", "numpy.sin", "numpy.array", "numpy.int64" ]
[((286, 322), 'numpy.ones', 'np.ones', (['([3] * seed.ndim)'], {'dtype': 'bool'}), '([3] * seed.ndim, dtype=bool)\n', (293, 322), True, 'import numpy as np\n'), ((332, 373), 'numpy.array', 'np.array', (['[(d // 2) for d in selem.shape]'], {}), '([(d // 2) for d in selem.shape])\n', (340, 373), True, 'import numpy as np...
# -*- coding: utf-8 -*- """ Created on Tue Jan 8 09:24:07 2019 @author: madsa """ from mpl_toolkits.mplot3d import Axes3D import matplotlib.pyplot as plt from matplotlib import cm from matplotlib.ticker import LinearLocator, FormatStrFormatter import numpy as np import matplotlib import pickle import matplotlib.tri a...
[ "matplotlib.pyplot.figure", "pickle.load", "matplotlib.pyplot.show", "numpy.meshgrid" ]
[((436, 459), 'pickle.load', 'pickle.load', (['pickleFile'], {}), '(pickleFile)\n', (447, 459), False, 'import pickle\n'), ((582, 594), 'matplotlib.pyplot.figure', 'plt.figure', ([], {}), '()\n', (592, 594), True, 'import matplotlib.pyplot as plt\n'), ((653, 670), 'numpy.meshgrid', 'np.meshgrid', (['x', 'y'], {}), '(x,...
# Copyright (c) 2014 Evalf # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, s...
[ "numpy.pad", "numpy.dtype", "numpy.array", "numpy.zeros_like" ]
[((5611, 5629), 'numpy.dtype', 'numpy.dtype', (['""">i1"""'], {}), "('>i1')\n", (5622, 5629), False, 'import contextlib, numpy\n'), ((5640, 5658), 'numpy.dtype', 'numpy.dtype', (['""">u1"""'], {}), "('>u1')\n", (5651, 5658), False, 'import contextlib, numpy\n'), ((5681, 5699), 'numpy.dtype', 'numpy.dtype', (['""">i2"""...
#!/usr/bin/env python # -*- coding:utf-8 -*- # @Filename: csvs_to_plots.py # @Author: <NAME> # @Time: 8/12/21 10:03 import re from os import walk import matplotlib.pyplot as plt import numpy as np import pandas as pd def main(): path = '../test_unlabeled/' dataset = 'titanic' files = next(...
[ "matplotlib.pyplot.show", "pandas.read_csv", "os.walk", "re.findall", "numpy.array", "matplotlib.pyplot.subplots", "matplotlib.pyplot.savefig" ]
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# -*- coding: utf-8 -*- """Trains a convolutional neural network on the MNIST dataset, then attacks it with the FGSM attack.""" from __future__ import absolute_import, division, print_function, unicode_literals from os.path import abspath import sys sys.path.append(abspath('.')) import keras.backend as k import tenso...
[ "os.path.abspath", "numpy.save", "numpy.argmax", "keras.layers.Dropout", "art.classifiers.KerasClassifier", "keras.layers.Flatten", "keras.backend.set_learning_phase", "keras.layers.Dense", "keras.layers.Conv2D", "keras.models.Sequential", "art.attacks.fast_gradient.FastGradientMethod", "keras...
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import numpy as np import cv2 import matplotlib.pyplot as plt from moviepy.editor import VideoFileClip from src.sliding_window import SlidingWindow from src.lane_line import LaneLine from src.image_reader import ImageReader from src.image_plotter import ImagePlotter from src.camera import Camera from src.threshold_app...
[ "numpy.dstack", "src.camera.Camera", "cv2.warpPerspective", "numpy.zeros_like", "cv2.putText", "moviepy.editor.VideoFileClip", "numpy.argmax", "src.threshold_applier.ThresholdApplier", "src.image_plotter.ImagePlotter", "numpy.empty", "src.sliding_window.SlidingWindow", "cv2.fillPoly", "src.i...
[((6900, 6928), 'src.image_reader.ImageReader', 'ImageReader', ([], {'read_mode': '"""RGB"""'}), "(read_mode='RGB')\n", (6911, 6928), False, 'from src.image_reader import ImageReader\n'), ((6938, 6954), 'src.camera.Camera', 'Camera', (['ir', 'None'], {}), '(ir, None)\n', (6944, 6954), False, 'from src.camera import Cam...
import numpy as np import matplotlib.pyplot as plt import pickle # load data data_folder = "traffic-signs-data/" training_file = data_folder+"train.p" validation_file = data_folder+"valid.p" testing_file = data_folder+"test.p" with open(training_file, mode='rb') as f: train = pickle.load(f) with open(validation_...
[ "torch.utils.data.DataLoader", "torch.nn.CrossEntropyLoss", "LeNet.LeNet", "pickle.load", "numpy.where", "Dataset.SignDataset", "cv2.normalize" ]
[((2092, 2132), 'Dataset.SignDataset', 'SignDataset', (['X_train', 'y_train', 'n_classes'], {}), '(X_train, y_train, n_classes)\n', (2103, 2132), False, 'from Dataset import SignDataset\n'), ((2148, 2186), 'Dataset.SignDataset', 'SignDataset', (['X_test', 'y_test', 'n_classes'], {}), '(X_test, y_test, n_classes)\n', (2...
# -*- coding: utf-8 -*- """img-grid-processing.ipynb Automatically generated by Colaboratory. Original file is located at https://colab.research.google.com/drive/1rrkKK1WGrbCC5TnJSGX8772RCMdavj-L """ from google.colab import drive drive.mount('/content/drive') import os import PIL img_dir = "/content/drive/MyD...
[ "PIL.Image.open", "numpy.random.choice", "google.colab.drive.mount", "matplotlib.pyplot.subplots", "os.listdir", "matplotlib.pyplot.savefig" ]
[((238, 267), 'google.colab.drive.mount', 'drive.mount', (['"""/content/drive"""'], {}), "('/content/drive')\n", (249, 267), False, 'from google.colab import drive\n'), ((345, 364), 'os.listdir', 'os.listdir', (['img_dir'], {}), '(img_dir)\n', (355, 364), False, 'import os\n'), ((455, 511), 'PIL.Image.open', 'PIL.Image...
from typing import Dict import matplotlib.pyplot as plt import numpy as np from IPython.core.display import display from matplotlib.ticker import FormatStrFormatter, MaxNLocator from mpl_toolkits.mplot3d import Axes3D from plotly import offline as plotly, graph_objs as go, tools PLOT_TYPES = {'random', 'grid', 'explo...
[ "plotly.offline.iplot", "matplotlib.pyplot.get_cmap", "matplotlib.pyplot.clf", "matplotlib.pyplot.close", "matplotlib.ticker.MaxNLocator", "numpy.zeros", "matplotlib.pyplot.figure", "matplotlib.ticker.FormatStrFormatter", "plotly.tools.make_subplots", "plotly.offline.init_notebook_mode", "matplo...
[((2187, 2228), 'plotly.offline.init_notebook_mode', 'plotly.init_notebook_mode', ([], {'connected': '(True)'}), '(connected=True)\n', (2212, 2228), True, 'from plotly import offline as plotly, graph_objs as go, tools\n'), ((2586, 2700), 'plotly.tools.make_subplots', 'tools.make_subplots', ([], {'rows': '(1)', 'cols': ...
from __future__ import absolute_import from __future__ import division from __future__ import print_function from six.moves import range import os import logging logging.basicConfig(level=logging.DEBUG) import sys #sys.stdout = sys.stderr # Prevent reaching to maximum recursion depth in `theano.tensor.grad` #sys.set...
[ "tensorflow.keras.preprocessing.image.ImageDataGenerator", "numpy.random.seed", "tensorflow.keras.optimizers.SGD", "tensorflow.keras.callbacks.ModelCheckpoint", "tensorflow.keras.layers.Flatten", "tensorflow.keras.regularizers.l2", "tensorflow.keras.layers.BatchNormalization", "tensorflow.keras.layers...
[((164, 204), 'logging.basicConfig', 'logging.basicConfig', ([], {'level': 'logging.DEBUG'}), '(level=logging.DEBUG)\n', (183, 204), False, 'import logging\n'), ((364, 387), 'numpy.random.seed', 'np.random.seed', (['(2 ** 10)'], {}), '(2 ** 10)\n', (378, 387), True, 'import numpy as np\n'), ((1034, 1066), 'logging.debu...
import numpy as np def _load_embeddings(fn): return np.load(fn) a = _load_embeddings('_embs/symptoms-en.npy') b = _load_embeddings('_output/paraphrase-MiniLM-L6-v2-symptoms-en.npy') for x, y in zip(a, b): for n, m in zip(x, y): if abs(n - m) > 1e-5: print(abs(n - m))
[ "numpy.load" ]
[((57, 68), 'numpy.load', 'np.load', (['fn'], {}), '(fn)\n', (64, 68), True, 'import numpy as np\n')]
from torch.utils.data import Dataset from torch.utils.data import DataLoader import os import torch import torch.nn.functional as F import torch.optim as optim from torchvision import transforms import torch.nn as nn import numpy as np import cv2 import os.path as osp from glob import glob from tqdm import tqdm c...
[ "numpy.zeros", "os.path.join", "numpy.maximum" ]
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import argparse import os import sys import time import traceback import multiprocessing import numpy as np from PIL import Image import matplotlib.pyplot as plt import matplotlib.image as mpimg import matplotlib.animation as animation from collections import OrderedDict from pynput.keyboard import Listener, Key, KeyCo...
[ "pynput.keyboard.KeyCode.from_char", "os.mkdir", "argparse.ArgumentParser", "matplotlib.pyplot.clf", "matplotlib.animation.FuncAnimation", "matplotlib.pyplot.figure", "os.path.join", "matplotlib.pyplot.imshow", "os.path.exists", "numpy.reshape", "traceback.format_exc", "matplotlib.image.imread...
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from conway import conway import unittest import numpy as np class TestConway(unittest.TestCase): def test_still(self): """2x2 block""" A = np.zeros((10,10)) A[1:3,1:3] = 1 B = conway(A) assert (A == B).all() def test_scillator(self): """blinker""" A =...
[ "unittest.main", "conway.conway", "numpy.zeros", "numpy.random.random" ]
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import numpy as np import torch from pruning import RePruning class RePruningConvDet(RePruning): def __init__(self, softness, magnitude_threshold, metric_quantile, lr, sample, lb, scale): super().__init__() self.masks = {} self.strength = softness self.magnitude_threshold = magnit...
[ "torch.ones_like", "torch.zeros_like", "torch.norm", "numpy.isnan", "torch.no_grad", "torch.abs" ]
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import numpy as np import pandas as pd import pytest from sklearn.model_selection import train_test_split from mercari.datasets_mx import prepare_vectorizer_1, prepare_vectorizer_2, prepare_vectorizer_3 from mercari.datasets_tf import prepare_vectorizer_1_tf, prepare_vectorizer_2_tf, prepare_vectorizer_3_tf from merca...
[ "mercari.datasets_tf.prepare_vectorizer_3_tf", "mercari.mx_sparse.MXRegression", "mercari.datasets_mx.prepare_vectorizer_2", "mercari.mercari_io.load_train", "mercari.datasets_mx.prepare_vectorizer_3", "mercari.tf_sparse.RegressionClf", "pandas.read_csv", "sklearn.model_selection.train_test_split", ...
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import argparse from source import tools from config import option import random from source import runtime from source import constants as C import json import numpy as np parser = argparse.ArgumentParser(description="Im2Latex Training Program") parser.add_argument("-m", "--mode", dest="mode", choices=("train", "test...
[ "source.tools.get_blind_maze", "argparse.ArgumentParser", "random.uniform", "numpy.square", "random.choice", "source.runtime.RuntimeGlobalInfo", "json.dumps" ]
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import os import random import torch import numpy as np from time import time from tqdm import tqdm from copy import deepcopy from pathlib import Path from prettytable import PrettyTable from common.test import test_v2 from common.utils import early_stopping, print_dict from common.config import parse_args from comm...
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import numpy as np import copy from scipy import optimize from astropy.stats import median_absolute_deviation from astropy.table import Column, Table, vstack from numpy.polynomial import legendre from scipy import interpolate from xwavecal.images import Image from xwavecal.stages import Stage, ApplyCalibration from x...
[ "xwavecal.utils.wavelength_utils.pixel_order_as_array", "numpy.sum", "numpy.allclose", "xwavecal.utils.misc_utils.minmax", "xwavecal.utils.wavelength_utils._sigma_clip", "numpy.argmin", "numpy.ones", "numpy.isclose", "numpy.arange", "scipy.interpolate.interp1d", "xwavecal.utils.wavelength_utils....
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import sys import numpy as np from vebio.Utilities import dict_to_yaml, yaml_to_dict from joblib import dump, load import matplotlib as mpl if len(sys.argv) > 1: params_filename = sys.argv[1] ve_params = yaml_to_dict(params_filename) else: ve_params = {} font={'family':'Helvetica', 'size':'15'} mpl.rc('f...
[ "vebio.Utilities.dict_to_yaml", "matplotlib.rc", "numpy.load", "vebio.Utilities.yaml_to_dict", "numpy.power", "numpy.array", "numpy.exp", "joblib.load" ]
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""" data_curation_functions.py Extract Kevin's functions for curation of public datasets Modify them to match Jonathan's curation methods in notebook 01/30/2020 """ import os import sys import numpy as np import pandas as pd import matplotlib.pyplot as plt from matplotlib_venn import venn3 import seaborn as sns impor...
[ "imp.reload", "atomsci.ddm.utils.datastore_functions.dataset_key_exists", "atomsci.ddm.utils.datastore_functions.upload_df_to_DS", "atomsci.ddm.utils.datastore_functions.retrieve_dataset_by_datasetkey", "atomsci.ddm.utils.datastore_functions.config_client", "atomsci.ddm.utils.curate_data.average_and_remov...
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# Licensed under an MIT style license -- see LICENSE.md import numpy as np import os from pesummary.core.file.formats.base_read import ( Read, SingleAnalysisRead, MultiAnalysisRead ) __author__ = ["<NAME> <<EMAIL>>"] class SingleAnalysisDefault(SingleAnalysisRead): """Class to handle result files which only...
[ "pesummary.core.file.formats.csv.read_csv", "pesummary.core.file.formats.numpy.read_numpy", "pesummary.core.file.formats.sql.read_sql", "pesummary.core.file.formats.hdf5.read_hdf5", "os.path.isfile", "numpy.array", "pesummary.core.file.formats.base_read.Read.extension_from_path", "pesummary.core.file....
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# Copyright 2021 Google LLC # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writin...
[ "torch.cuda.synchronize", "trimesh.load", "argparse.ArgumentParser", "torch.cat", "numpy.ones", "numpy.linalg.norm", "numpy.tile", "torch.no_grad", "soft_renderer.SoftRenderer", "cv2.imwrite", "ext_utils.joint_catalog.SMALJointInfo", "os.path.dirname", "numpy.transpose", "torch.load", "t...
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import unittest import numpy as np class TestCase(unittest.TestCase): def test_approx_k(self): try: from task import k, U, Sigma, Vt, approx approx_test = U @ Sigma[:, :k] @ Vt[:k, :] np.testing.assert_array_equal(approx, approx_test, ...
[ "numpy.testing.assert_array_equal" ]
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import numpy as np # Adapted from https://github.com/Hakuyume/chainer-ssd def decode_onnx(loc, priors, variances): """Decode locations from predictions using priors to undo the encoding we did for offset regression at train time. Args: loc (tensor): location predictions for loc layers, ...
[ "numpy.exp", "numpy.concatenate" ]
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#-*-coding:utf-8-*- # date:2020-03-28 # Author: X.L.Eric # function: image pixel - float (0.~1.) import cv2 # 加载 OpenCV 库 import numpy as np # 加载 numpy 库 if __name__ == "__main__": img_h = 480 img_w = 640 img = np.zeros([img_h,img_w], dtype = np.float) cv2.namedWindow('image_0', 1) cv2.imshow('ima...
[ "cv2.waitKey", "cv2.imshow", "numpy.zeros", "cv2.namedWindow" ]
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import numpy as np import matplotlib.pyplot as plt class House(): def __init__(self, K: float=0.5, C: float=0.3, Qhvac: float=9, hvacON: float=0, occupancy: float=1, Tin_initial: float=30): self.K = K # thermal conductivity self.C = C # thermal capacity self.Tin = Tin_initial # Inside Tempe...
[ "numpy.full", "random.randint", "matplotlib.pyplot.close", "matplotlib.pyplot.legend", "numpy.finfo", "numpy.random.randint", "matplotlib.pyplot.subplots" ]
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#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ @author: <NAME> """ #0. SET PARAMETERS ###Path to directory with models (one or several models to be tested) model_dir = '' ###DIRECTORY WITH IMAGES #Tumor base_dir_tu = '' #Benign base_dir_norm = '' ###OUTPUT DIRECTORY FOR RESULT FILES result_dir = '' ### #1. IMPORT...
[ "staintools.BrightnessStandardizer", "keras.models.load_model", "statistics.median", "numpy.float32", "staintools.StainNormalizer", "numpy.expand_dims", "staintools.read_image", "keras.preprocessing.image.img_to_array", "keras.preprocessing.image.load_img", "numpy.array", "PIL.ImageOps.flip", ...
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"""Functions to configure energy demand outputs for supply model """ import os import logging import numpy as np import pandas as pd from energy_demand.basic import date_prop, testing_functions, lookup_tables def constrained_results( results_constrained, results_unconstrained_no_heating, submo...
[ "pandas.DataFrame", "energy_demand.basic.lookup_tables.basic_lookups", "logging.debug", "numpy.sum", "energy_demand.basic.date_prop.convert_h_to_day_year_and_h", "energy_demand.basic.testing_functions.test_if_minus_value_in_array", "logging.info" ]
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#!/usr/bin/env python ###################################################################### # Software License Agreement (BSD License) # # Copyright (c) 2017, Rice University # All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that t...
[ "matplotlib.pyplot.get_cmap", "matplotlib.pyplot.plot", "matplotlib.colors.Normalize", "matplotlib.pyplot.axes", "matplotlib.pyplot.axis", "numpy.cumsum", "matplotlib.pyplot.figure", "matplotlib.path.Path", "numpy.sin", "numpy.loadtxt", "numpy.cos", "matplotlib.pyplot.gca", "matplotlib.pyplo...
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