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""" Apply cluster correction for independent-samples T-test based on spatial proximity and cluster size. Inspired by MNE tutorial. Created on Fri Feb 22 13:21:40 2019 @author: <NAME> <<EMAIL>> """ import numpy as np from scipy import stats from scipy.io import loadmat import matplotlib.pyplot as plt import os from ...
[ "permutation_cluster_test_AT._permutation_cluster_test_AT", "numpy.load", "numpy.save", "matplotlib.pyplot.hist", "matplotlib.pyplot.plot", "scipy.io.loadmat", "scipy.stats.gaussian_kde", "os.path.isfile", "matplotlib.pyplot.figure", "numpy.max", "numpy.where", "numpy.int", "matplotlib.pyplo...
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"""Plotting function for birdsonganalysis.""" import numpy as np import seaborn as sns import matplotlib.patches as p import matplotlib.pyplot as plt from .songfeatures import spectral_derivs from .constants import FREQ_RANGE def spectral_derivs_plot(spec_der, contrast=0.1, ax=None, freq_range=None, ...
[ "numpy.flip", "seaborn.heatmap", "matplotlib.patches.Rectangle", "numpy.nanmin", "matplotlib.pyplot.subplots", "numpy.nanmax" ]
[((1018, 1141), 'seaborn.heatmap', 'sns.heatmap', (['spec_der.T'], {'yticklabels': '(50)', 'xticklabels': '(50)', 'vmin': '(-contrast)', 'vmax': 'contrast', 'ax': 'ax', 'cmap': '"""Greys"""', 'cbar': '(False)'}), "(spec_der.T, yticklabels=50, xticklabels=50, vmin=-contrast,\n vmax=contrast, ax=ax, cmap='Greys', cbar...
import numpy as np test=np.load('/home/ubuntu/hzy/pythia/data/m4c_textvqa_ocr_en_frcn_features/train_images/f441f29812b385ad_info.npy',encoding = "latin1",allow_pickle=True) #加载文件 doc = open('contrast9.txt', 'a') #打开一个存储文件,并依次写入 print(test, file=doc) #将打印内容写入文件中
[ "numpy.load" ]
[((24, 183), 'numpy.load', 'np.load', (['"""/home/ubuntu/hzy/pythia/data/m4c_textvqa_ocr_en_frcn_features/train_images/f441f29812b385ad_info.npy"""'], {'encoding': '"""latin1"""', 'allow_pickle': '(True)'}), "(\n '/home/ubuntu/hzy/pythia/data/m4c_textvqa_ocr_en_frcn_features/train_images/f441f29812b385ad_info.npy'\n...
import os import shutil import zipfile import networkx as nx import numpy as np import pandas as pd import requests from sklearn.preprocessing import OneHotEncoder, StandardScaler from spektral.utils import nx_to_numpy DATASET_URL = 'https://ls11-www.cs.tu-dortmund.de/people/morris/graphkerneldatasets' DATASET_CLEAN...
[ "os.remove", "numpy.sum", "sklearn.preprocessing.StandardScaler", "shutil.rmtree", "os.path.join", "os.path.exists", "requests.get", "networkx.clustering", "spektral.utils.nx_to_numpy", "sklearn.preprocessing.OneHotEncoder", "os.listdir", "numpy.vstack", "numpy.concatenate", "pandas.read_h...
[((413, 456), 'os.path.expanduser', 'os.path.expanduser', (['"""~/.spektral/datasets/"""'], {}), "('~/.spektral/datasets/')\n", (431, 456), False, 'import os\n'), ((3310, 3321), 'numpy.array', 'np.array', (['X'], {}), '(X)\n', (3318, 3321), True, 'import numpy as np\n'), ((4619, 4667), 'os.path.exists', 'os.path.exists...
import os import errno import copy import json import numpy as np from scipy.optimize import curve_fit import matplotlib.pyplot as plt from .ccd import CCD from Stele.processing.processing_hsg.helper_functions import gauss from .helper_functions import calc_laser_frequencies np.set_printoptions(linewidth=500) class ...
[ "os.mkdir", "numpy.sum", "numpy.argmax", "numpy.array_str", "json.dumps", "numpy.argsort", "numpy.isclose", "numpy.mean", "matplotlib.pyplot.figure", "numpy.arange", "matplotlib.pyplot.gca", "numpy.diag", "os.path.join", "numpy.set_printoptions", "numpy.std", "numpy.append", "numpy.l...
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from __future__ import absolute_import from __future__ import division from __future__ import print_function import sys import os import os.path as osp import argparse import time import numpy as np from tqdm import tqdm import json import torch import torch.backends.cudnn as cudnn import cv2 import _init_paths from ...
[ "sys.path.pop", "argparse.ArgumentParser", "utils.utilitys.plot_keypoint", "config.update_config", "cv2.imshow", "detector.load_model", "torch.no_grad", "detector.yolo_human_det", "torch.load", "json.dump", "cv2.waitKey", "numpy.asarray", "torch.cuda.is_available", "track.sort.Sort", "ut...
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import tensorflow as tf import numpy as np import gpflow from gpflow.base import Parameter from gpflow.utilities import positive class ReLUKernel(gpflow.kernels.Kernel): """ Kernel such that the mean 0 GP with the corresponding covariance function is equal in distribution to an infinitely wide BNN prior w...
[ "tensorflow.sin", "gpflow.utilities.positive", "numpy.ones", "tensorflow.acos", "tensorflow.matmul", "tensorflow.square", "tensorflow.sqrt", "tensorflow.cos" ]
[((2614, 2651), 'tensorflow.sqrt', 'tf.sqrt', (['(KiX[:, None] * KiX2[None, :])'], {}), '(KiX[:, None] * KiX2[None, :])\n', (2621, 2651), True, 'import tensorflow as tf\n'), ((2698, 2749), 'tensorflow.acos', 'tf.acos', (['(jitter + (1 - 2 * jitter) * Ki / sqrt_term)'], {}), '(jitter + (1 - 2 * jitter) * Ki / sqrt_term)...
def dir_name(config, method): if config.game.kind == "Breakthrough": return "{}-breakthrough-{}".format(method, config.game.size) elif config.game.kind == "Gym": return "{}-gym-{}".format(method, config.game.name) else: print("Unknown game in config file.") exit(-1) def get...
[ "numpy.abs", "numpy.floor", "numpy.zeros", "numpy.clip", "tensorflow.keras.losses.categorical_crossentropy", "numpy.sign" ]
[((1394, 1438), 'numpy.clip', 'np.clip', (['scaled', '(-support_size)', 'support_size'], {}), '(scaled, -support_size, support_size)\n', (1401, 1438), True, 'import numpy as np\n'), ((1449, 1466), 'numpy.floor', 'np.floor', (['clamped'], {}), '(clamped)\n', (1457, 1466), True, 'import numpy as np\n'), ((1541, 1580), 'n...
#!/usr/bin/env python3 """ Python3 class to work with Aravis/GenICam cameras, subclass of sdss-basecam. .. module:: araviscam .. moduleauthor:: <NAME> <<EMAIL>> """ import sys import math import asyncio import numpy import astropy from basecam.mixins import ImageAreaMixIn from basecam import ( CameraSystem, ...
[ "basecam.CameraConnectionError", "math.radians", "lvmcam.araviscam.aravis.Aravis.update_device_list", "lvmcam.araviscam.aravis.Aravis.get_device_id", "math.sin", "math.cos", "lvmcam.araviscam.aravis.Aravis.get_n_devices", "astropy.io.fits.Card", "numpy.ndarray", "lvmcam.araviscam.aravis.Aravis.Cam...
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import json from collections import Counter import re from VQA.PythonHelperTools.vqaTools.vqa import VQA import random import numpy as np from keras.preprocessing.image import load_img, img_to_array, ImageDataGenerator from matplotlib import pyplot as plt import os import VQAModel from keras.applications.xception impor...
[ "os.fsdecode", "keras.applications.xception.preprocess_input", "numpy.expand_dims", "keras.preprocessing.image.img_to_array", "keras.preprocessing.image.load_img", "os.fsencode", "os.path.join", "os.listdir", "VQAModel.createModelXception" ]
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#!/usr/bin/env python #https://docs.opencv.org/3.3.1/d7/d8b/tutorial_py_lucas_kanade.html import numpy as np import cv2 import sys feature_params = dict( maxCorners = 100, #100, # params for ShiTomasi corner detection qualityLevel = 0.2, #0.3,,#0.2, minDistance = 7, #12, ...
[ "numpy.zeros_like", "cv2.cvtColor", "cv2.destroyAllWindows", "cv2.waitKey", "cv2.VideoCapture", "numpy.random.randint", "cv2.goodFeaturesToTrack", "numpy.bitwise_and", "sys.stdout.flush", "cv2.calcOpticalFlowPyrLK", "cv2.imshow", "numpy.ndarray" ]
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#!/usr/bin/python # This script predicts body part in test dataset import os os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID" os.environ["CUDA_VISIBLE_DEVICES"] = "0" import numpy as np import tensorflow from tensorflow import keras from keras import optimizers from keras.models import load_model from keras.preprocessi...
[ "keras.models.load_model", "csv.writer", "numpy.expand_dims", "keras.preprocessing.image.img_to_array", "keras.preprocessing.image.load_img", "keras.optimizers.RMSprop", "re.sub", "os.listdir", "numpy.vstack" ]
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import typing import random from pathlib import Path import logging from time import strftime, gmtime from datetime import datetime import os import argparse import contextlib from collections import defaultdict import numpy as np import torch from torch.utils.data import Dataset import torch.distributed as dist logg...
[ "os.remove", "numpy.random.seed", "collections.defaultdict", "os.path.isfile", "os.close", "torch.distributed.get_world_size", "argparse.ArgumentTypeError", "random.seed", "lmdb.open", "pickle.dumps", "torch.manual_seed", "datetime.datetime", "zipfile.ZipFile", "tempfile.mkstemp", "os.pa...
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# Copyright 2019 The TensorFlow Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applica...
[ "tensorflow.test.main", "tensorflow_addons.utils.test_utils.layer_test", "numpy.random.seed", "numpy.random.random_sample", "numpy.expand_dims", "numpy.apply_along_axis", "numpy.where", "numpy.linalg.norm" ]
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# Copyright 2019 NREL # Licensed under the Apache License, Version 2.0 (the "License"); you may not use # this file except in compliance with the License. You may obtain a copy of the # License at http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software distribu...
[ "floris.tools.visualization.visualize_cut_plane", "matplotlib.pyplot.show", "numpy.linspace", "floris.tools.floris_utilities.FlorisInterface", "matplotlib.pyplot.subplots" ]
[((910, 969), 'floris.tools.floris_utilities.FlorisInterface', 'wfct.floris_utilities.FlorisInterface', (['"""example_input.json"""'], {}), "('example_input.json')\n", (947, 969), True, 'import floris.tools as wfct\n'), ((1658, 1672), 'matplotlib.pyplot.subplots', 'plt.subplots', ([], {}), '()\n', (1670, 1672), True, '...
import os import numpy as np import matplotlib.pyplot as plt import yaml from multiview_manipulation import plotting as plot_utils, utils as bc_viewag_plot_utils # CONFIG #------------------------------------------------------------------------------- # plot options wide_full_comp = True # wide is 2 rows by 5 cols, ...
[ "numpy.load", "os.makedirs", "matplotlib.pyplot.get_cmap", "multiview_manipulation.utils.get_means_lowers_uppers", "multiview_manipulation.plotting.setup_pretty_plotting", "multiview_manipulation.utils.plot_four_conds", "numpy.arange", "matplotlib.pyplot.tick_params", "matplotlib.pyplot.ylabel", "...
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""" Clenshaw-Curtis quadrature method is a good all-around quadrature method comparable to Gaussian quadrature, but typically limited to finite intervals without a specific weight function. In addition to be quite accurate, the weights and abscissas can be calculated quite fast. Another thing to note is that Clenshaw-...
[ "numpy.sum", "numpy.asarray", "numpy.ones", "numpy.where", "numpy.array", "numpy.arange", "numpy.cos" ]
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#data preparation utils import numpy as np import tensorflow as tf def partitionByClass(X,y_true): maxc = np.max(y_true+1) ids = [[] for i in range(maxc)] for i in range(np.shape(y_true)[0]): ids[y_true[i]].append(i) return ids def prepareBatch(X,y_true,ids_by_class_train,N_classes = 10, N_su...
[ "tensorflow.reshape", "tensorflow.Session", "numpy.shape", "numpy.max", "numpy.mean", "numpy.rot90", "numpy.reshape", "numpy.array", "numpy.random.choice", "numpy.random.permutation", "numpy.concatenate", "numpy.ndarray.flatten" ]
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#!/usr/bin/env python # coding: utf-8 # # 02__trans_motifs # # in this notebook, i find motifs that are associated w/ trans effects using linear models and our RNA-seq data # In[1]: import warnings warnings.filterwarnings('ignore') import itertools import pandas as pd import numpy as np import matplotlib as mpl i...
[ "numpy.random.seed", "numpy.abs", "sklearn.preprocessing.StandardScaler", "matplotlib.pyplot.subplot2grid", "numpy.isnan", "matplotlib.pyplot.figure", "statsmodels.api.qqplot", "pandas.read_table", "sys.path.append", "pandas.DataFrame", "matplotlib.pyplot.close", "numpy.max", "statsmodels.fo...
[((203, 236), 'warnings.filterwarnings', 'warnings.filterwarnings', (['"""ignore"""'], {}), "('ignore')\n", (226, 236), False, 'import warnings\n'), ((779, 812), 'sys.path.append', 'sys.path.append', (['"""../../../utils"""'], {}), "('../../../utils')\n", (794, 812), False, 'import sys\n'), ((1029, 1052), 'seaborn.set'...
import unittest import numpy as np import multipy ################################################################################ ################################################################################ #### #### Class: Transform #### ########################################################################...
[ "numpy.random.rand", "multipy.Transform", "numpy.shape" ]
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# SPDX-FileCopyrightText: 2022 UChicago Argonne, LLC # SPDX-License-Identifier: MIT from datetime import datetime from pathlib import Path import shutil from typing import List, Optional import numpy as np import pandas as pd from .fileutils import PathLike, run as run_proc from .parameters import Parameters from .p...
[ "pandas.read_csv", "pathlib.Path", "numpy.array", "shutil.which" ]
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# Copyright (c) 2020, Apple Inc. All rights reserved. # # Use of this source code is governed by a BSD-3-clause license that can be # found in the LICENSE.txt file or at https://opensource.org/licenses/BSD-3-Clause import logging import numpy as np import copy import coremltools from coremltools import converters ...
[ "numpy.sum", "numpy.abs", "numpy.isclose", "numpy.round", "numpy.prod", "logging.error", "numpy.testing.assert_equal", "coremltools.converters.mil.mil.Program", "copy.deepcopy", "coremltools.models.neural_network.printer.print_network_spec", "numpy.issubdtype", "numpy.all", "coremltools.conv...
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import os import flopy import pandas as pd import numpy as np def hdobj2data(hdsobj): # convert usg hdsobj to array of shape (nper, nnodes) hds = [] kstpkpers = hdsobj.get_kstpkper() for kstpkper in kstpkpers: data = hdsobj.get_data(kstpkper=kstpkper) fdata = [] for lay in rang...
[ "pandas.DataFrame", "numpy.array", "os.path.join" ]
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import argparse import network_utils import helper_utils import torch import json import numpy as np def get_args(): parser = argparse.ArgumentParser(description="Predict flower classification with DNN") parser.add_argument('input', default='./flowers/test/17/image_03911.jpg', type=str, help="input flower ima...
[ "helper_utils.str_to_bool", "argparse.ArgumentParser", "numpy.argmax", "torch.exp", "network_utils.loading_model", "helper_utils.load_cat_to_name", "torch.cuda.is_available", "helper_utils.display_result", "torch.unsqueeze", "torch.no_grad", "helper_utils.process_image", "torch.from_numpy" ]
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import numpy as np from eb_gridmaker import dtb, config from eb_gridmaker.utils import aux, multiproc from elisa import SingleSystem, BinarySystem, Observer, settings from elisa.base.error import LimbDarkeningError, AtmosphereError, MorphologyError def spotty_single_system_random_sampling(db_name=None, number_of_sam...
[ "eb_gridmaker.dtb.insert_observation", "eb_gridmaker.dtb.search_for_breakpoint", "numpy.random.seed", "eb_gridmaker.utils.aux.draw_single_star_params", "eb_gridmaker.utils.aux.assign_eccentric_system_params", "eb_gridmaker.utils.aux.draw_inclination", "elisa.SingleSystem.from_json", "eb_gridmaker.util...
[((604, 660), 'numpy.linspace', 'np.linspace', (['(0)', '(1.0)'], {'num': 'config.N_POINTS', 'endpoint': '(False)'}), '(0, 1.0, num=config.N_POINTS, endpoint=False)\n', (615, 660), True, 'import numpy as np\n'), ((722, 767), 'numpy.arange', 'np.arange', (['(0)', 'number_of_samples'], {'dtype': 'np.int'}), '(0, number_o...
#!/usr/bin/env python3 """ This module should introduce you to basic plotting routines using matplotlib. We will be plotting quadratic equations since we already have a module to calculate them. """ # Matplotlib is a module with routines to # plot data and display them on the screen or save them to files. # The prima...
[ "matplotlib.pyplot.title", "matplotlib.pyplot.xlim", "matplotlib.pyplot.axvline", "matplotlib.pyplot.show", "matplotlib.pyplot.plot", "matplotlib.pyplot.ylim", "matplotlib.pyplot.legend", "numpy.arange", "quad_class.quadratic_Equation", "matplotlib.pyplot.ylabel", "matplotlib.pyplot.xlabel" ]
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#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ gnpy.core.request ================= This module contains path request functionality. This functionality allows the user to provide a JSON request file in accordance with a Yang model for requesting path computations and returns path results in terms of path and feas...
[ "csv.writer", "gnpy.core.info.create_input_spectral_information", "networkx.dijkstra_path", "numpy.mean", "collections.namedtuple", "gnpy.core.utils.lin2db", "logging.getLogger" ]
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""" ---------------------------------------------------------------------- --- jumeg.jumeg_noise_reducer -------------------------------- ---------------------------------------------------------------------- author : <NAME> email : <EMAIL> last update: 02.05.2019 version : 1.14 -----------------------...
[ "numpy.abs", "numpy.polyfit", "mne.pick_types", "mne.io.Raw", "numpy.allclose", "mne.epochs._is_good", "mne.find_events", "matplotlib.pyplot.figure", "numpy.linalg.svd", "numpy.mean", "numpy.arange", "sys.stdout.flush", "numpy.diag", "builtins.range", "mne.utils.logger.info", "numpy.co...
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import argparse import os import logging import string import sys import json import numpy as np import pandas as pd import tensorflow as tf from sqlalchemy import create_engine from .alphabet import ALPHABET_DNA from .model import ( conv1d_densenet_regression_model, compile_regression_model, Denormalized...
[ "json.load", "argparse.ArgumentParser", "logging.basicConfig", "os.makedirs", "os.getcwd", "numpy.random.randint", "sqlalchemy.create_engine", "sys.exit", "tensorflow.keras.callbacks.TensorBoard", "os.path.join", "logging.getLogger" ]
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import numpy import xraylib def transfocator_guess_configuration(focal_f_target, deltas=[0.999998], radii=[500e-4], initial_focal_distance=None, verbose=0): nn = len(radii) ncombinations = 2**nn Farray = numpy.zeros(ncombinations) # Rarray = numpy.zeros(ncombina...
[ "numpy.binary_repr", "numpy.zeros_like", "numpy.abs", "numpy.zeros", "numpy.max", "numpy.array", "numpy.linspace", "srxraylib.plot.gol.set_qt", "srxraylib.plot.gol.plot", "xraylib.Refractive_Index_Re" ]
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''' Copyright 2022 Airbus SAS Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software dis...
[ "sos_trades_core.tools.post_processing.pareto_front_optimal_charts.instanciated_pareto_front_optimal_chart.InstantiatedParetoFrontOptimalChart", "sos_trades_core.tools.post_processing.charts.chart_filter.ChartFilter", "numpy.arange", "sos_trades_core.tools.post_processing.charts.two_axes_instanciated_chart.Tw...
[((17569, 17697), 'sos_trades_core.tools.post_processing.charts.two_axes_instanciated_chart.TwoAxesInstanciatedChart', 'TwoAxesInstanciatedChart', (['x_axis_name', 'y_axis_name', '[min_x - 5, max_x + 5]', '[min_y - max_y * 0.05, max_y * 1.05]', 'chart_name'], {}), '(x_axis_name, y_axis_name, [min_x - 5, max_x + 5],\n ...
""" ====================== CSA Histogram Approach ====================== Static Chemical Shift Powder Pattern using a Histogram Approach The equation for the static powder pattern for a simple chemical shift anisotropy interation is given by the following equation .. math:: H = \\delta_{iso} + \\frac {1}{2} ...
[ "matplotlib.pyplot.title", "matplotlib.pyplot.xlim", "matplotlib.pyplot.show", "matplotlib.pyplot.hist", "matplotlib.pyplot.yticks", "numpy.zeros", "numpy.sin", "numpy.cos", "matplotlib.pyplot.gca", "matplotlib.pyplot.xlabel", "sys.exit" ]
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import typing import gettext import numpy from nion.data import Core from nion.data import DataAndMetadata from nion.swift.model import Symbolic from nion.typeshed import API_1_0 _ = gettext.gettext class AlignMultiDimensionalSequence: label = _("Align multi-dimensional sequence") inputs = {"si_sequence_dat...
[ "nion.swift.model.Symbolic.register_computation_type", "nion.data.Core.function_sequence_measure_relative_translation", "nion.data.DataAndMetadata.new_data_and_metadata", "numpy.zeros", "numpy.empty_like", "numpy.unravel_index", "numpy.product" ]
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# Copyright (c) 2018-2019 <NAME>, <NAME> # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish,...
[ "numpy.conj", "numpy.random.rand", "numpy.zeros", "numpy.mean", "numpy.matmul", "numpy.dot", "numpy.eye", "numpy.linalg.solve", "numpy.sqrt" ]
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# -*- coding: utf-8 -*- # ***************************************************************************** # NICOS, the Networked Instrument Control System of the MLZ # Copyright (c) 2009-2021 by the NICOS contributors (see AUTHORS) # # This program is free software; you can redistribute it and/or modify it under # the t...
[ "nicos.core.Attach", "numpy.radians", "nicos_sinq.amor.devices.logical_motor.InterfaceLogicalMotorHandler.doPreinit", "nicos.core.dictwith", "nicos.core.Override", "numpy.arctan", "nicos.core.utils.multiStatus", "nicos.core.oneof" ]
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import os import numpy as np import codecs import pandas as pd import json from glob import glob import cv2 import shutil from sklearn.model_selection import train_test_split #1.标签路径 csv_file = "annotations.csv" saved_path = "./VOCdevkit/VOC2007/" #保存路径 image_save_path = "./JPEGImages/" image_raw_parh ...
[ "os.makedirs", "numpy.concatenate", "codecs.open", "pandas.read_csv", "sklearn.model_selection.train_test_split", "os.path.exists", "cv2.imread", "numpy.array", "glob.glob", "shutil.copy" ]
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#!/usr/bin/env python # _*_ coding: utf-8 _*_ import argparse import numpy as np from sklearn.ensemble import RandomForestClassifier from sklearn.model_selection import StratifiedKFold def RF_Classifier(X, y, indep=None, fold=5, n_trees=100, out='RF_output'): """ Parameters: ---------- :...
[ "sklearn.ensemble.RandomForestClassifier", "numpy.array", "sklearn.model_selection.StratifiedKFold" ]
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import pytest from gpmap import GenotypePhenotypeMap import numpy as np @pytest.fixture(scope="module") def gpvolve_gpm(): wildtype = "AAA" genotypes = [ "AAA", "AAB", "ABA", "BAA", "ABB", "BAB", "BBA", "BBB" ] mutations = { 0:...
[ "gpmap.GenotypePhenotypeMap", "pytest.fixture", "numpy.iinfo", "numpy.finfo", "numpy.arange" ]
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import os import cv2 import torch import time import ujson as json import numpy as np from tqdm import tqdm from torch.cuda.amp import autocast, GradScaler from torchvision_models.segmentation import erfnet_resnet, deeplabv1_vgg16, deeplabv1_resnet18, deeplabv1_resnet34, \ deeplabv1_resnet50, deeplabv1_resnet101, e...
[ "numpy.argmax", "torchvision_models.segmentation.deeplabv1_vgg16", "utils.all_utils_semseg.save_checkpoint", "torch.no_grad", "torchvision_models.segmentation.erfnet_resnet", "torch.cuda.amp.autocast", "torch.utils.data.DataLoader", "os.path.exists", "utils.all_utils_semseg.ConfusionMatrix", "ujso...
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import os.path as osp from cytokit.ops.op import CytokitOp, get_tf_config from cytokit.miq import prediction from cytokit import data as cytokit_data from cytokit import io as cytokit_io import tensorflow as tf import numpy as np import logging DEFAULT_PATCH_SIZE = 84 DEFAULT_N_CLASSES = 11 logger = logging.getLogger(...
[ "numpy.argmax", "cytokit.data.initialize_best_focus_model", "cytokit.io.get_best_focus_img_path", "numpy.array", "numpy.arange", "tensorflow.Graph", "cytokit.ops.op.get_tf_config", "os.path.join", "logging.getLogger" ]
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import torch import numpy as np class Uniform_Buffer: def __init__(self, buffer_size, state_shape, action_shape, device, mix=1): self._n = 0 self._p = 0 self.mix = mix self.buffer_size = buffer_size self.total_size = mix * buffer_size self.states = torch.empty( ...
[ "numpy.random.randint", "torch.empty", "torch.from_numpy" ]
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""" Linear State Space Assembler """ from sharpy.utils.solver_interface import solver, BaseSolver import sharpy.linear.utils.ss_interface as ss_interface import sharpy.utils.settings as settings import sharpy.utils.h5utils as h5 import warnings @solver class LinearAssembler(BaseSolver): r""" Warnings: ...
[ "numpy.log", "sharpy.utils.settings.SettingsTable", "sharpy.utils.settings.to_custom_types", "numpy.linalg.eig", "sharpy.linear.utils.ss_interface.initialise_system", "numpy.argsort", "sharpy.utils.h5utils.readh5" ]
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import matplotlib matplotlib.use('Agg') import matplotlib.pyplot as plot import simpy, numpy from mds_sim import * from rvs import * from patch import * # ######################## Models ######################## # def ar_ub_fj(n, X): return float(1/moment_i_n_k(1, n, n, X) ) def E_T_fj(ar, n, X): # def max_cdf...
[ "matplotlib.pyplot.legend", "matplotlib.use", "numpy.linspace", "simpy.Environment", "matplotlib.pyplot.ylabel", "matplotlib.pyplot.gcf", "matplotlib.pyplot.xlabel" ]
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# Copyright 2020 The TensorFlow Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the 'License'); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applica...
[ "tensorflow.io.gfile.GFile", "tensorflow_examples.lite.model_maker.third_party.recommendation.ml.model.recommendation_model_launcher.get_callbacks", "numpy.zeros", "tensorflow.__version__.split", "tensorflow.compat.v1.logging.info", "tensorflow_examples.lite.model_maker.core.api.mm_export", "tensorflow_...
[((1620, 1662), 'tensorflow_examples.lite.model_maker.core.api.mm_export', 'mm_export', (['"""recommendation.Recommendation"""'], {}), "('recommendation.Recommendation')\n", (1629, 1662), False, 'from tensorflow_examples.lite.model_maker.core.api import mm_export\n'), ((5207, 5253), 'tensorflow_examples.lite.model_make...
import time import datetime import itertools import numpy as np import torch import torch.nn as nn from torch.autograd import Variable import torch.autograd as autograd from torch.utils.data import DataLoader import torch.backends.cudnn as cudnn import dataset import utils import sys import networks.pwcnet as pwcnet ...
[ "utils.repackage_hidden", "numpy.ones", "utils.create_generator", "utils.create_dataloader", "utils.create_discriminator", "networks.pwcnet.PWCEstimate", "torch.nn.MSELoss", "dataset.ColorizationDataset", "torch.utils.data.DataLoader", "torch.zeros", "networks.pwcnet.PWCNetBackward", "utils.te...
[((702, 729), 'utils.create_generator', 'utils.create_generator', (['opt'], {}), '(opt)\n', (724, 729), False, 'import utils\n'), ((750, 781), 'utils.create_discriminator', 'utils.create_discriminator', (['opt'], {}), '(opt)\n', (776, 781), False, 'import utils\n'), ((4021, 4062), 'dataset.ColorizationDataset', 'datase...
# !!! Change: this is a new file import os import pathlib import random import time import pprint from torch.utils.tensorboard import SummaryWriter import torch import torch.nn as nn import torch.nn.parallel import torch.backends.cudnn as cudnn import torch.optim import torch.utils.data import torch.utils.data.distri...
[ "torch.cuda.synchronize", "utils.net_utils.set_model_prune_rate", "utils.net_utils.freeze_model_weights", "time.time", "os.path.isfile", "utils.logging.AverageMeter", "torch.cuda.is_available", "torch.device", "torch.cuda.set_device", "torch.nn.DataParallel", "torch.no_grad", "numpy.concatenat...
[((1274, 1304), 'utils.feature_extractor.FeatureExtractor', 'FeatureExtractor', (['model.module'], {}), '(model.module)\n', (1290, 1304), False, 'from utils.feature_extractor import FeatureExtractor\n'), ((1761, 1807), 'utils.logging.AverageMeter', 'AverageMeter', (['"""Time"""', '""":6.3f"""'], {'write_val': '(False)'...
import networkx as nx import numpy as np from pyquil.api import QPUCompiler from pyquil.gates import H, RY, CZ, CNOT, MEASURE from pyquil.quil import Program from pyquil.quilbase import Pragma from forest.benchmarking.compilation import basic_compile def create_ghz_program(tree: nx.DiGraph): """ Create a Bel...
[ "pyquil.quilbase.Pragma", "pyquil.gates.CZ", "pyquil.gates.MEASURE", "numpy.asarray", "pyquil.gates.H", "networkx.topological_sort", "pyquil.gates.RY", "forest.benchmarking.compilation.basic_compile", "pyquil.gates.CNOT", "pyquil.quil.Program", "networkx.is_tree", "numpy.all" ]
[((495, 511), 'networkx.is_tree', 'nx.is_tree', (['tree'], {}), '(tree)\n', (505, 511), True, 'import networkx as nx\n'), ((1210, 1232), 'numpy.asarray', 'np.asarray', (['bitstrings'], {}), '(bitstrings)\n', (1220, 1232), True, 'import numpy as np\n'), ((2729, 2738), 'pyquil.quil.Program', 'Program', ([], {}), '()\n', ...
#!/usr/bin/env python # -*- coding: utf-8 -*- """ conan.stacker was created on 2017/10/17. Author: Charles_Lai Email: <EMAIL> """ import numpy as np from sklearn.model_selection import StratifiedKFold from sklearn.metrics import roc_auc_score from diego.ensemble_net.base import Ensemble from diego.ensemble_net.combin...
[ "diego.ensemble_net.combination.Combiner", "numpy.mean", "numpy.zeros", "sklearn.model_selection.StratifiedKFold" ]
[((3956, 3976), 'numpy.mean', 'np.mean', (['out'], {'axis': '(2)'}), '(out, axis=2)\n', (3963, 3976), True, 'import numpy as np\n'), ((2395, 2416), 'diego.ensemble_net.combination.Combiner', 'Combiner', ([], {'rule': '"""mean"""'}), "(rule='mean')\n", (2403, 2416), False, 'from diego.ensemble_net.combination import Com...
import numpy as np import astropy.units as u from astropy.table import QTable from jdaviz import Specviz from specutils import Spectrum1D def test_line_lists(): viz = Specviz() spec = Spectrum1D(flux=np.random.rand(100)*u.Jy, spectral_axis=np.arange(6000, 7000, 10)*u.AA) viz.load_sp...
[ "astropy.units.Quantity", "jdaviz.Specviz", "astropy.table.QTable", "numpy.arange", "numpy.random.rand", "numpy.all" ]
[((174, 183), 'jdaviz.Specviz', 'Specviz', ([], {}), '()\n', (181, 183), False, 'from jdaviz import Specviz\n'), ((343, 351), 'astropy.table.QTable', 'QTable', ([], {}), '()\n', (349, 351), False, 'from astropy.table import QTable\n'), ((449, 466), 'astropy.units.Quantity', 'u.Quantity', (['(0.046)'], {}), '(0.046)\n',...
""" Simple utils to save and load from disk. """ import joblib import gzip import pickle import os import tempfile import tarfile import zipfile import logging from urllib.request import urlretrieve from typing import Any, Iterator, List, Optional, Tuple, Union, cast, IO import pandas as pd import numpy as np import ...
[ "pickle.dump", "numpy.load", "pandas.read_csv", "typing.cast", "joblib.dump", "os.path.isfile", "pickle.load", "rdkit.Chem.MolToSmiles", "os.path.join", "numpy.pad", "pandas.DataFrame", "os.path.exists", "tarfile.open", "pandas.concat", "numpy.save", "numpy.asarray", "zipfile.ZipFile...
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import sys sys.path.append('/usr/lib/python3.6/site-packages/') import argparse import base64 from datetime import datetime import os import shutil import numpy as np import socketio import eventlet.wsgi from PIL import Image from flask import Flask from io import BytesIO from keras.models import load_model from util...
[ "sys.path.append", "keras.models.load_model", "socketio.Middleware", "utils.parse_position", "numpy.load", "argparse.ArgumentParser", "os.makedirs", "socketio.Server", "flask.Flask", "numpy.asarray", "os.path.exists", "base64.b64decode", "datetime.datetime.utcnow", "shutil.rmtree", "util...
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# This file is used to configure the behavior of pytest when using the Astropy # test infrastructure. It needs to live inside the package in order for it to # get picked up when running the tests inside an interpreter using # packagename.test from copy import copy import numpy as np import pytest from astropy import ...
[ "numpy.random.seed", "astropy.modeling.models.Linear1D", "numpy.random.randn", "astropy.modeling.models.Gaussian1D", "importlib.util.find_spec", "specutils.spectra.Spectrum1D", "copy.copy", "numpy.random.random", "numpy.linspace", "pytest_astropy_header.display.PYTEST_HEADER_MODULES.pop" ]
[((845, 886), 'pytest_astropy_header.display.PYTEST_HEADER_MODULES.pop', 'PYTEST_HEADER_MODULES.pop', (['"""Pandas"""', 'None'], {}), "('Pandas', None)\n", (870, 886), False, 'from pytest_astropy_header.display import PYTEST_HEADER_MODULES, TESTED_VERSIONS\n'), ((2986, 3013), 'numpy.linspace', 'np.linspace', (['(0.4)',...
''' Deep Q-learning approach to the cartpole problem using OpenAI's gym environment. As part of the basic series on reinforcement learning @ https://github.com/vmayoral/basic_reinforcement_learning Inspired by https://github.com/VinF/deer @author: <NAME> <<EMAIL>> ''' import gym import random import pandas ...
[ "deer.experiment.base_controllers.LearningRateController", "numpy.argmax", "keras.models.Model", "numpy.arange", "keras.layers.Input", "keras.layers.Reshape", "deer.experiment.base_controllers.InterleavedTestEpochController", "keras.optimizers.SGD", "deer.experiment.base_controllers.TrainerControlle...
[((15309, 15348), 'logging.basicConfig', 'logging.basicConfig', ([], {'level': 'logging.INFO'}), '(level=logging.INFO)\n', (15328, 15348), False, 'import logging\n'), ((15398, 15434), 'deer.default_parser.process_args', 'process_args', (['sys.argv[1:]', 'Defaults'], {}), '(sys.argv[1:], Defaults)\n', (15410, 15434), Fa...
from Agent import Agent from Gaussian_Reward import Gaussian_Reward from erdos_renyl_model_without_duplicate import MAMAB import matplotlib.pyplot as plt import numpy as np from math import sqrt, log import networkx as nx no_iterations = 20000 no_agents = 5 no_bandits = 20 #mean = [5.2, 4.1, 9.5, 2....
[ "numpy.flip", "networkx.erdos_renyi_graph", "matplotlib.pyplot.close", "numpy.argsort", "Gaussian_Reward.Gaussian_Reward", "matplotlib.pyplot.figure", "numpy.array", "erdos_renyl_model_without_duplicate.MAMAB", "numpy.add", "matplotlib.pyplot.subplots" ]
[((1089, 1105), 'numpy.argsort', 'np.argsort', (['mean'], {}), '(mean)\n', (1099, 1105), True, 'import numpy as np\n'), ((1119, 1145), 'numpy.flip', 'np.flip', (['maxi_mean'], {'axis': '(0)'}), '(maxi_mean, axis=0)\n', (1126, 1145), True, 'import numpy as np\n'), ((1387, 1423), 'matplotlib.pyplot.subplots', 'plt.subplo...
import os import glob import pickle import zipfile import warnings import numpy as np import pandas as pd from urllib import request def trim_eol_whitespace(data_file): with open(data_file, 'r') as f: lines = f.readlines() lines = [line.replace(' \n', '\n') for line in lines] with open(data_file, ...
[ "numpy.random.uniform", "os.mkdir", "pickle.dump", "numpy.abs", "os.remove", "zipfile.ZipFile", "numpy.float32", "os.path.exists", "urllib.request.urlretrieve", "numpy.sin", "os.path.splitext", "numpy.linspace", "warnings.warn", "os.path.join" ]
[((6613, 6655), 'numpy.random.uniform', 'np.random.uniform', (['(0)', '(10)'], {'size': 'num_samples'}), '(0, 10, size=num_samples)\n', (6630, 6655), True, 'import numpy as np\n'), ((6832, 6856), 'numpy.linspace', 'np.linspace', (['(-4)', '(14)', '(250)'], {}), '(-4, 14, 250)\n', (6843, 6856), True, 'import numpy as np...
#!/usr/bin/env python # coding: utf-8 # In[1]: # import tensorflow as tf import tensorflow.keras.backend as K from tensorflow.keras.models import Sequential, Model import cv2 import matplotlib.pyplot as plt import numpy as np import pandas as pd # In[2]: path_all_tfrecord = "fp56.tfrecord" # In[3]: dir_fro...
[ "numpy.fmax", "fp_tensorflow.create_vgg_5y_model", "numpy.argmax", "pandas.read_csv", "matplotlib.pyplot.axes", "numpy.ones", "matplotlib.pyplot.figure", "matplotlib.pyplot.tight_layout", "floorplan_analysis.read_mono_from_image_unicode", "cv2.cvtColor", "matplotlib.pyplot.imshow", "numpy.cums...
[((598, 619), 'fp_tensorflow.create_vgg_5y_model', 'create_vgg_5y_model', ([], {}), '()\n', (617, 619), False, 'from fp_tensorflow import create_vgg_5y_model\n'), ((1659, 1693), 'numpy.loadtxt', 'np.loadtxt', (['"""biclust_col.txt"""', 'int'], {}), "('biclust_col.txt', int)\n", (1669, 1693), True, 'import numpy as np\n...
from sklearn import linear_model as lm import scipy import numpy as np import pandas as pd from skorecard.utils import convert_sparse_matrix from sklearn.utils.validation import check_is_fitted class LogisticRegression(lm.LogisticRegression): """Extended Logistic Regression. Extends [sklearn.linear_model.Log...
[ "pandas.DataFrame", "numpy.ones", "sklearn.utils.validation.check_is_fitted", "numpy.product", "numpy.linalg.inv", "numpy.array", "numpy.diag", "skorecard.utils.convert_sparse_matrix" ]
[((4592, 4616), 'skorecard.utils.convert_sparse_matrix', 'convert_sparse_matrix', (['X'], {}), '(X)\n', (4613, 4616), False, 'from skorecard.utils import convert_sparse_matrix\n'), ((5146, 5175), 'numpy.product', 'np.product', (['predProbs'], {'axis': '(1)'}), '(predProbs, axis=1)\n', (5156, 5175), True, 'import numpy ...
""" Provides concrete tools for dealing with two of the most useful types of surfaces we have """ import numpy as np from collections import namedtuple from McUtils.GaussianInterface import GaussianLogReader, GaussianFChkReader from McUtils.Zachary import Surface, MultiSurface, InterpolatedSurface, TaylorSeriesSurface...
[ "McUtils.GaussianInterface.GaussianFChkReader", "numpy.asarray", "numpy.floor", "numpy.transpose", "McUtils.Zachary.Surface", "numpy.argsort", "numpy.product", "McUtils.GaussianInterface.GaussianLogReader", "numpy.array", "collections.namedtuple", "numpy.diff", "numpy.where" ]
[((1430, 1459), 'numpy.array', 'np.array', (['parse_data[keys[1]]'], {}), '(parse_data[keys[1]])\n', (1438, 1459), True, 'import numpy as np\n'), ((3252, 3279), 'numpy.floor', 'np.floor', (['(scan_coords / tol)'], {}), '(scan_coords / tol)\n', (3260, 3279), True, 'import numpy as np\n'), ((5657, 5679), 'numpy.asarray',...
from whatthefood.graph.node import Node from collections.abc import Sequence import numpy as np class Grad(Node): def __init__(self, y, xs): self.unwrap = False if not isinstance(xs, Sequence): xs = [xs] self.unwrap = True self.outputs_graph = self._build_outputs...
[ "numpy.ones_like" ]
[((805, 833), 'numpy.ones_like', 'np.ones_like', (['values[self.y]'], {}), '(values[self.y])\n', (817, 833), True, 'import numpy as np\n')]
import datetime import pandas as pd import numpy as np import subprocess import pickle from numpy import array import seaborn as sn import tensorflow as tf import matplotlib.pyplot as plt #combining predicitions and generating plot for pred. representation def predict(data): with open('rolf.pickle', 'rb') as hand...
[ "matplotlib.pyplot.title", "matplotlib.pyplot.savefig", "tensorflow.keras.models.load_model", "pandas.DataFrame.from_dict", "numpy.zeros", "pickle.load", "numpy.array", "numpy.arange", "matplotlib.pyplot.ylabel", "matplotlib.pyplot.xlabel", "numpy.unique" ]
[((394, 422), 'pandas.DataFrame.from_dict', 'pd.DataFrame.from_dict', (['data'], {}), '(data)\n', (416, 422), True, 'import pandas as pd\n'), ((634, 669), 'tensorflow.keras.models.load_model', 'tf.keras.models.load_model', (['"""model"""'], {}), "('model')\n", (660, 669), True, 'import tensorflow as tf\n'), ((681, 709)...
import ast import argparse import logging import warnings import os import json import glob import subprocess import sys import boto3 import pickle import pandas as pd from collections import Counter from timeit import default_timer as timer import numpy as np import seaborn as sns import matplotlib.pyplot as plt impo...
[ "matplotlib.pyplot.title", "sklearn.metrics.confusion_matrix", "pickle.dump", "seaborn.heatmap", "argparse.ArgumentParser", "autogluon.TabularPrediction.fit", "pandas.read_csv", "sklearn.metrics.classification_report", "matplotlib.pyplot.figure", "itertools.cycle", "os.path.join", "pandas.set_...
[((358, 383), 'warnings.catch_warnings', 'warnings.catch_warnings', ([], {}), '()\n', (381, 383), False, 'import warnings\n'), ((389, 451), 'warnings.filterwarnings', 'warnings.filterwarnings', (['"""ignore"""'], {'category': 'DeprecationWarning'}), "('ignore', category=DeprecationWarning)\n", (412, 451), False, 'impor...
''' Adjusted Kapre Spectrogram and Melspectrogram classes which don't apply range compression in the case that melgram=True ''' from kapre.time_frequency import Spectrogram, Melspectrogram #from __future__ import absolute_import import numpy as np from keras import backend as K def amplitude_to_decibel(x, amin=...
[ "keras.backend.dot", "keras.backend.sqrt", "numpy.log", "keras.backend.floatx", "keras.backend.maximum", "keras.backend.permute_dimensions" ]
[((2148, 2187), 'keras.backend.dot', 'K.dot', (['power_spectrogram', 'self.freq2mel'], {}), '(power_spectrogram, self.freq2mel)\n', (2153, 2187), True, 'from keras import backend as K\n'), ((636, 646), 'keras.backend.floatx', 'K.floatx', ([], {}), '()\n', (644, 646), True, 'from keras import backend as K\n'), ((1897, 1...
import numpy import joblib import json from azureml.core.model import Model # from inference_schema.schema_decorators import input_schema, output_schema def init(): # load the model from file into a global object global model # we assume that we have just one model # AZUREML_MODEL_DIR is an environm...
[ "joblib.load", "numpy.array", "json.loads", "azureml.core.model.Model.get_model_path" ]
[((464, 524), 'azureml.core.model.Model.get_model_path', 'Model.get_model_path', ([], {'model_name': '"""driver_training_model.pkl"""'}), "(model_name='driver_training_model.pkl')\n", (484, 524), False, 'from azureml.core.model import Model\n'), ((546, 569), 'joblib.load', 'joblib.load', (['model_path'], {}), '(model_p...
''' The whole reading model. CNN + LSTM + A classifier with multinomial distribution. ''' import torch from torch import optim from torch import nn import torch.nn.functional as F from torch.distributions import Bernoulli, Categorical from torchtext import datasets from torchtext import data import os import time imp...
[ "numpy.random.seed", "argparse.ArgumentParser", "torch.distributions.Categorical", "torchtext.datasets.IMDB.splits", "torch.manual_seed", "sklearn.metrics.accuracy_score", "torch.cuda.manual_seed", "torch.nn.CrossEntropyLoss", "torch.nn.functional.softmax", "torchtext.data.LabelField", "torch.op...
[((795, 836), 'argparse.ArgumentParser', 'argparse.ArgumentParser', ([], {'description': 'desc'}), '(description=desc)\n', (818, 836), False, 'import argparse\n'), ((1238, 1311), 'torchtext.data.Field', 'data.Field', ([], {'sequential': '(True)', 'tokenize': '"""spacy"""', 'lower': '(True)', 'fix_length': '(400)'}), "(...
# DISTRIBUTION STATEMENT A. Approved for public release: distribution unlimited. # # This material is based upon work supported by the Assistant Secretary of Defense for Research and # Engineering under Air Force Contract No. FA8721-05-C-0002 and/or FA8702-15-D-0001. Any opinions, # findings, conclusions or recommendat...
[ "h5py.File", "json.load", "numpy.copy", "numpy.asarray", "numpy.expand_dims", "pickle.load", "numpy.array", "numpy.concatenate", "torch.from_numpy" ]
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import tensorflow as tf import numpy as np from tensorflow.python.ops.rnn import _transpose_batch_time class Decoder: def __init__(self, **kwargs): self.encodings = None self.num_sentence_characters = kwargs['num_sentence_characters'] self.dict_length = kwargs['dict_length'] self.m...
[ "tensorflow.einsum", "tensorflow.reduce_sum", "tensorflow.nn.tanh", "tensorflow.reshape", "numpy.shape", "tensorflow.matmul", "tensorflow.divide", "tensorflow.nn.bidirectional_dynamic_rnn", "tensorflow.split", "tensorflow.get_variable", "tensorflow.nn.softmax", "tensorflow.nn.moments", "tens...
[((831, 862), 'tensorflow.reduce_mean', 'tf.reduce_mean', (['values'], {'axis': '(-1)'}), '(values, axis=-1)\n', (845, 862), True, 'import tensorflow as tf\n'), ((883, 958), 'tensorflow.layers.dense', 'tf.layers.dense', ([], {'inputs': 'mean_pool', 'activation': 'tf.nn.relu', 'units': 'units_dense'}), '(inputs=mean_poo...
import numpy as np ### 1 def fib_matrix(n): for i in range(n): res = pow((np.matrix([[1, 1], [1, 0]], dtype='int64')), i) * np.matrix([[1], [0]]) print(int(res[0][0])) # 调用 fib_matrix(100) ### 2 # 使用矩阵计算斐波那契数列 def Fibonacci_Matrix_tool(n): Matrix = np.matrix("1 1;1 0", dtype='int64') # ...
[ "numpy.matrix", "numpy.linalg.matrix_power" ]
[((278, 313), 'numpy.matrix', 'np.matrix', (['"""1 1;1 0"""'], {'dtype': '"""int64"""'}), "('1 1;1 0', dtype='int64')\n", (287, 313), True, 'import numpy as np\n'), ((343, 376), 'numpy.linalg.matrix_power', 'np.linalg.matrix_power', (['Matrix', 'n'], {}), '(Matrix, n)\n', (365, 376), True, 'import numpy as np\n'), ((13...
import argparse import json from multiprocessing.util import Finalize from typing import Dict, List, Tuple from multiprocessing import Pool as ProcessPool import itertools import pickle import numpy as np import os from os.path import join from tqdm import tqdm from hotpot.data_handling.relevance_training_data import...
[ "json.dump", "os.path.abspath", "multiprocessing.util.Finalize", "pickle.dump", "argparse.ArgumentParser", "json.load", "hotpot.data_handling.dataset.QuestionAndParagraphsSpec", "json.loads", "hotpot.tokenizers.CoreNLPTokenizer", "pickle.load", "hotpot.utils.ResourceLoader", "hotpot.data_handl...
[((800, 818), 'hotpot.tokenizers.CoreNLPTokenizer', 'CoreNLPTokenizer', ([], {}), '()\n', (816, 818), False, 'from hotpot.tokenizers import CoreNLPTokenizer\n'), ((823, 884), 'multiprocessing.util.Finalize', 'Finalize', (['PROCESS_TOK', 'PROCESS_TOK.shutdown'], {'exitpriority': '(100)'}), '(PROCESS_TOK, PROCESS_TOK.shu...
import pytest from numpy import allclose, array, asarray, add, ndarray, generic from lightning import series, image pytestmark = pytest.mark.usefixtures("eng") def test_first(eng): data = series.fromlist([array([1, 2, 3]), array([4, 5, 6])], engine=eng) assert allclose(data.first(), [1, 2, 3]) data = im...
[ "numpy.asarray", "numpy.allclose", "numpy.array", "lightning.image.fromlist", "lightning.series.fromlist", "pytest.mark.usefixtures" ]
[((131, 161), 'pytest.mark.usefixtures', 'pytest.mark.usefixtures', (['"""eng"""'], {}), "('eng')\n", (154, 161), False, 'import pytest\n'), ((569, 582), 'numpy.asarray', 'asarray', (['data'], {}), '(data)\n', (576, 582), False, 'from numpy import allclose, array, asarray, add, ndarray, generic\n'), ((595, 638), 'numpy...
#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Thu May 5 08:18:05 2022 https://thatascience.com/learn-machine-learning/pipeline-in-scikit-learn/ @author: qian.cao """ import pandas as pd import numpy as np from sklearn.preprocessing import StandardScaler from sklearn.decomposition import PCA from sk...
[ "matplotlib.pyplot.title", "numpy.load", "sklearn.preprocessing.StandardScaler", "sklearn.model_selection.train_test_split", "matplotlib.pyplot.figure", "numpy.mean", "sys.path.append", "numpy.std", "matplotlib.pyplot.close", "matplotlib.pyplot.colorbar", "numpy.max", "numpy.linspace", "nump...
[((528, 566), 'sys.path.append', 'sys.path.append', (['"""../bonebox/metrics/"""'], {}), "('../bonebox/metrics/')\n", (543, 566), False, 'import sys\n'), ((762, 796), 'os.makedirs', 'os.makedirs', (['outDir'], {'exist_ok': '(True)'}), '(outDir, exist_ok=True)\n', (773, 796), False, 'import os\n'), ((949, 974), 'numpy.l...
#!/usr/bin/env python # Python Standard Library pass # Third-Party Libraries import numpy as np import matplotlib.pyplot as plt from matplotlib.colors import to_rgb # Local Library import mivp # ------------------------------------------------------------------------------ grey_4 = to_rgb("#ced4da") # ----------...
[ "numpy.meshgrid", "numpy.vectorize", "matplotlib.pyplot.plot", "mivp.generate_movie", "matplotlib.pyplot.axis", "matplotlib.colors.to_rgb", "matplotlib.pyplot.figure", "numpy.sin", "numpy.array", "numpy.arange", "numpy.linspace", "numpy.cos", "numpy.sqrt" ]
[((289, 306), 'matplotlib.colors.to_rgb', 'to_rgb', (['"""#ced4da"""'], {}), "('#ced4da')\n", (295, 306), False, 'from matplotlib.colors import to_rgb\n'), ((858, 893), 'numpy.arange', 'np.arange', (['t_span[0]', 't_span[1]', 'dt'], {}), '(t_span[0], t_span[1], dt)\n', (867, 893), True, 'import numpy as np\n'), ((1544,...
""" Unit tests for the density class """ from unittest import TestCase import sys sys.path.append('../src') import numpy as np import unittest import suftware as sw import os class Density1d(TestCase): def setUp(self): self.N = 5 self.data = sw.simulate_density_data(distribution_type='uniform'...
[ "sys.path.append", "unittest.TextTestRunner", "suftware.simulate_density_data", "numpy.array", "unittest.TestLoader", "suftware.DensityEstimator" ]
[((84, 109), 'sys.path.append', 'sys.path.append', (['"""../src"""'], {}), "('../src')\n", (99, 109), False, 'import sys\n'), ((268, 339), 'suftware.simulate_density_data', 'sw.simulate_density_data', ([], {'distribution_type': '"""uniform"""', 'N': 'self.N', 'seed': '(1)'}), "(distribution_type='uniform', N=self.N, se...
from typing import List, Dict import matplotlib.pyplot as plt import numpy as np from mushroom_rl.algorithms.value.td.q_learning import QLearning from mushroom_rl.core import Core, Agent, Environment from mushroom_rl.policy import EpsGreedy from mushroom_rl.utils.dataset import compute_J from mushroom_rl.utils.paramet...
[ "matplotlib.pyplot.title", "mdp.algo.model_free.env.deep_sea.DeepSea", "numpy.random.seed", "matplotlib.pyplot.fill_between", "matplotlib.pyplot.tight_layout", "mushroom_rl.utils.dataset.compute_J", "numpy.power", "matplotlib.pyplot.show", "matplotlib.pyplot.legend", "numpy.percentile", "mushroo...
[((2804, 2819), 'numpy.array', 'np.array', (['steps'], {}), '(steps)\n', (2812, 2819), True, 'import numpy as np\n'), ((3081, 3130), 'matplotlib.pyplot.plot', 'plt.plot', (['steps', 'best_reward'], {'label': '"""Best reward"""'}), "(steps, best_reward, label='Best reward')\n", (3089, 3130), True, 'import matplotlib.pyp...
# Copyright 2019 <NAME> and <NAME> # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in wri...
[ "warnings.simplefilter", "heapq.heappush", "math.ceil", "pandas.read_csv", "common.sender_obs.SenderMonitorInterval", "heapq.heappop", "random.random", "common.sender_obs.SenderHistory", "common.sender_obs.get_min_obs_vector", "numpy.array", "numpy.tile", "numpy.mean", "numpy.random.choice",...
[((680, 740), 'warnings.simplefilter', 'warnings.simplefilter', ([], {'action': '"""ignore"""', 'category': 'UserWarning'}), "(action='ignore', category=UserWarning)\n", (701, 740), False, 'import warnings\n'), ((24695, 24771), 'gym.envs.registration.register', 'register', ([], {'id': '"""PccNs-v0"""', 'entry_point': '...
import numpy as np from sklearn.model_selection._split import _BaseKFold, indexable, _num_samples from sklearn.utils.validation import _deprecate_positional_args # https://www.kaggle.com/marketneutral/purged-time-series-cv-xgboost-optuna/data # modified code for group gaps; source # https://github.com/getgaurav2/scik...
[ "sklearn.model_selection._split.indexable", "numpy.concatenate", "sklearn.model_selection._split._num_samples", "numpy.argsort", "numpy.arange", "numpy.unique" ]
[((3291, 3314), 'sklearn.model_selection._split.indexable', 'indexable', (['X', 'y', 'groups'], {}), '(X, y, groups)\n', (3300, 3314), False, 'from sklearn.model_selection._split import _BaseKFold, indexable, _num_samples\n'), ((3335, 3350), 'sklearn.model_selection._split._num_samples', '_num_samples', (['X'], {}), '(...
# -*- coding: utf-8 -*- """ Created on Sun Jun 24 08:54:07 2018 @author: bwhe """ import ast import numpy as np import pandas as pd import gc import lightgbm as lgb import pickle import time import w2v from itertools import repeat def remove_iteral(sentence): return ast.literal_eval(sente...
[ "pandas.read_csv", "time.time", "w2v.build_artist_w2v", "gc.collect", "difflib.SequenceMatcher", "pickle.load", "numpy.mean", "w2v.build_album_w2v", "ast.literal_eval", "gensim.models.Word2Vec.load", "w2v.build_track_w2v", "itertools.repeat" ]
[((419, 485), 'pandas.read_csv', 'pd.read_csv', (['readfile'], {'usecols': "['pid', 'pred', 'scores']", 'nrows': '(10)'}), "(readfile, usecols=['pid', 'pred', 'scores'], nrows=10)\n", (430, 485), True, 'import pandas as pd\n'), ((1086, 1098), 'gc.collect', 'gc.collect', ([], {}), '()\n', (1096, 1098), False, 'import gc...
import logging import torch.nn as nn import torch.utils.checkpoint as cp import torch import numpy as np from mmcv.cnn import constant_init, kaiming_init from mmcv.runner import load_checkpoint from ...registry import BACKBONES from ..utils.resnet_r3d_utils import * class BasicBlock(nn.Module): def __init__(self,...
[ "torch.nn.BatchNorm3d", "torch.nn.ReLU", "numpy.multiply", "mmcv.cnn.constant_init", "mmcv.cnn.kaiming_init", "mmcv.runner.load_checkpoint", "torch.nn.MaxPool3d", "logging.getLogger" ]
[((1424, 1433), 'torch.nn.ReLU', 'nn.ReLU', ([], {}), '()\n', (1431, 1433), True, 'import torch.nn as nn\n'), ((4251, 4260), 'torch.nn.ReLU', 'nn.ReLU', ([], {}), '()\n', (4258, 4260), True, 'import torch.nn as nn\n'), ((8206, 8215), 'torch.nn.ReLU', 'nn.ReLU', ([], {}), '()\n', (8213, 8215), True, 'import torch.nn as ...
from abc import ABC, abstractmethod from hyperopt import STATUS_OK import numpy as np import logging import pandas as pd import shap import matplotlib.pyplot as plt import seaborn as sns from crosspredict.iterator import Iterator class CrossModelFabric(ABC): def __init__(self, iterator: Iterator,...
[ "pandas.DataFrame", "numpy.abs", "pandas.merge", "seaborn.barplot", "numpy.zeros", "shap.TreeExplainer", "matplotlib.pyplot.figure", "numpy.max", "pandas.Series", "shap.summary_plot", "pandas.concat", "logging.getLogger" ]
[((1763, 1790), 'logging.getLogger', 'logging.getLogger', (['__name__'], {}), '(__name__)\n', (1780, 1790), False, 'import logging\n'), ((7084, 7112), 'matplotlib.pyplot.figure', 'plt.figure', ([], {'figsize': '(10, 10)'}), '(figsize=(10, 10))\n', (7094, 7112), True, 'import matplotlib.pyplot as plt\n'), ((7127, 7154),...
#!/usr/bin/env python # # Author: <NAME> <<EMAIL>> # ''' An example to set OMP threads in FCI calculations. In old pyscf versions, different number of OpenMP threads may lead to slightly different answers. This issue was fixed. see github issue #249. ''' from functools import reduce import numpy from pyscf import gt...
[ "h5py.File", "pyscf.lib.num_threads", "pyscf.fci.direct_spin0.FCI", "pyscf.ao2mo.kernel", "numpy.zeros", "pyscf.fci.cistring.num_strings", "functools.reduce", "pyscf.lo.lowdin", "pyscf.lib.unpack_tril" ]
[((485, 497), 'pyscf.lo.lowdin', 'lo.lowdin', (['s'], {}), '(s)\n', (494, 497), False, 'from pyscf import gto, lo, fci, ao2mo, scf, lib\n'), ((614, 649), 'functools.reduce', 'reduce', (['numpy.dot', '(orb.T, h1, orb)'], {}), '(numpy.dot, (orb.T, h1, orb))\n', (620, 649), False, 'from functools import reduce\n'), ((655,...
#!/usr/bin/env python3 import sys import numpy as np from PySide6.QtCore import Qt, Slot from PySide6.QtGui import QAction, QKeySequence from PySide6.QtWidgets import ( QApplication, QHBoxLayout, QLabel, QMainWindow, QPushButton, QSizePolicy, QVBoxLayout, QWidget ) from matplotlib.backends.backend_qt5agg i...
[ "matplotlib.colors.LinearSegmentedColormap.from_list", "numpy.zeros_like", "PySide6.QtGui.QAction", "skimage.data.immunohistochemistry", "PySide6.QtGui.QKeySequence", "skimage.exposure.rescale_intensity", "PySide6.QtWidgets.QVBoxLayout", "PySide6.QtWidgets.QWidget", "PySide6.QtWidgets.QPushButton", ...
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from scipy.integrate import solve_ivp import numpy as np import matplotlib.pyplot as plt # Milne-Simpson PC method def milnePC(def_fn, xa, xb, ya, N): f = def_fn # intakes function to method to approximate h = (xb - xa) / N # creates step size based on input values of a, b, N t = np.arange(xa, xb + ...
[ "matplotlib.pyplot.title", "numpy.abs", "matplotlib.pyplot.show", "matplotlib.pyplot.plot", "matplotlib.pyplot.legend", "numpy.zeros", "matplotlib.pyplot.figure", "numpy.arange", "matplotlib.pyplot.ylabel", "matplotlib.pyplot.xlabel" ]
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#Load packages import numpy as np import pandas as pd import torch from tqdm.auto import tqdm import pytorch_lightning as pl from transformers import AutoTokenizer, AutoModel #Import package for aspect sentiment prediction import aspect_based_sentiment_analysis as absa #Load the ABSA sentiment model nlp = absa.load()...
[ "pandas.DataFrame", "torch.nn.BCELoss", "numpy.argmax", "transformers.AutoModel.from_pretrained", "transformers.AutoTokenizer.from_pretrained", "torch.sigmoid", "numpy.where", "aspect_based_sentiment_analysis.load", "numpy.array", "torch.nn.Linear" ]
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# encoding: utf-8 import os import numpy as np from histolab.slide import Slide from histolab.tiler import GridTiler, RandomTiler, ScoreTiler from histolab.scorer import NucleiScorer from ..fixtures import SVS from ..util import load_expectation class DescribeRandomTiler: def it_locates_tiles_on_the_slide(sel...
[ "histolab.tiler.RandomTiler", "numpy.asarray", "histolab.tiler.GridTiler", "os.path.join", "histolab.scorer.NucleiScorer" ]
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import numpy import cupy from cupy import core def place(arr, mask, vals): """Change elements of an array based on conditional and input values. This function uses the first N elements of `vals`, where N is the number of true values in `mask`. Args: arr (cupy.ndarray): Array to put data int...
[ "numpy.cumprod", "cupy.isscalar", "cupy.asarray", "cupy.core.ElementwiseKernel", "numpy.can_cast", "numpy.diff", "cupy.arange", "cupy.diff" ]
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from skimage.segmentation import slic from skimage.util import img_as_float from skimage import io import datetime from PIL import Image import numpy as np imgname="taili" image = img_as_float(io.imread(imgname+".png")) print(datetime.datetime.now().strftime('%Y-%m-%d %H:%M:%S')+" Start.") for numSegments ...
[ "skimage.segmentation.slic", "datetime.datetime.now", "numpy.array", "skimage.io.imread" ]
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# coding: utf-8 import copy from functools import reduce import numpy as np import torch import torch.nn as nn import torch.nn.functional as F from flearn.common.strategy import AVG from flearn.common.trainer import Trainer class AVGTrainer(Trainer): def __init__(self, model, optimizer, criterion, device, displ...
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# -*- coding: utf-8 -*- #%% NumPyの読み込み import numpy as np # SciPyのstatsモジュールの読み込み import scipy.stats as st # Pandasの読み込み import pandas as pd # PyMCの読み込み import pymc3 as pm # MatplotlibのPyplotモジュールの読み込み import matplotlib.pyplot as plt # tqdmからプログレスバーの関数を読み込む from tqdm import trange # 日本語フォントの設定 from matplotl...
[ "sys.platform.startswith", "numpy.random.seed", "scipy.stats.norm.rvs", "numpy.empty", "scipy.stats.invgamma.rvs", "numpy.mean", "scipy.stats.invgamma.pdf", "matplotlib.pyplot.tight_layout", "pandas.DataFrame", "matplotlib.font_manager.FontProperties", "numpy.std", "numpy.linspace", "matplot...
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from __future__ import division, print_function, absolute_import # noinspection PyUnresolvedReferences from six.moves import range from scipy.stats import rv_discrete import numpy as np __all__ = ['nonuniform', 'gibbs'] # noinspection PyMethodOverriding,PyPep8Naming class nonuniform_gen(rv_discrete): """A nonun...
[ "numpy.sum", "six.moves.range", "numpy.asarray", "numpy.zeros", "numpy.finfo", "numpy.exp", "numpy.random.rand" ]
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import warnings warnings.filterwarnings('ignore') import numpy as np import pandas as pd import matplotlib.pyplot as plt import networkx as nx def calc_mean_std(x): return (np.mean(x), np.std(x, ddof=1) / np.sqrt(len(x))) def color_func(p): if p > 0.2: return 'dodgerblue' elif p < 0.05: re...
[ "pandas.read_csv", "numpy.mean", "numpy.std", "warnings.filterwarnings" ]
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from collections import OrderedDict import pandas as pd import numpy as np from tia.analysis.model.interface import ( TxnColumns as TC, MarketDataColumns as MC, PlColumns as PL, TxnPlColumns as TPL, ) from tia.analysis.perf import periods_in_year, guess_freq from tia.util.decorator import lazy_propert...
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import numpy as np import os import warnings warnings.filterwarnings("ignore", category=FutureWarning) import sys stderr = sys.stderr sys.stderr = open(os.devnull, 'w') from keras.models import Sequential, load_model from keras.layers import LSTM, Dropout, TimeDistributed, Dense, Activation, Embedding sys.stderr = stde...
[ "keras.layers.Activation", "warnings.filterwarnings", "keras.layers.LSTM", "keras.layers.Dropout", "numpy.zeros", "keras.layers.Dense", "numpy.random.randint", "keras.layers.Embedding", "keras.models.Sequential" ]
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import os import random import numpy as np import cv2 from keras.utils import Sequence # This vvvvv is for example_preprocess function and augs # from albumentations import ( # HorizontalFlip, VerticalFlip, Flip, Transpose, Rotate, ShiftScaleRotate, RandomScale, # RandomBrightness, RandomContrast, Rando...
[ "random.shuffle", "numpy.empty", "os.path.join", "os.listdir", "cv2.resize" ]
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"""https://github.com/kujason/scene_vis""" import os import numpy as np import vtk class VtkImage: """Image """ def __init__(self): self.vtk_actor = vtk.vtkImageActor() # Need to keep reference to the image self.image = None self.vtk_image_data = None def _save_im...
[ "vtk.vtkPNGReader", "numpy.copy", "vtk.vtkImageActor", "os.path.splitext", "vtk.vtkImageImport", "numpy.ascontiguousarray" ]
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#!/usr/bin/env python ''' Plot degree values for a given set of nodes in a simple circle plot. ''' import numpy as np import matplotlib.pyplot as plt import mne from jumeg import get_jumeg_path from jumeg.connectivity import plot_degree_circle import bct orig_labels_fname = get_jumeg_path() + '/data/desikan_label_...
[ "jumeg.get_jumeg_path", "numpy.load", "mne.connectivity.degree", "jumeg.connectivity.plot_degree_circle" ]
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import sys import setuptools from distutils import sysconfig cfg_vars = sysconfig.get_config_vars() for key, value in cfg_vars.items(): if type(value) == str: cfg_vars[key] = cfg_vars[key].replace("-Wstrict-prototypes", "") cfg_vars[key] = cfg_vars[key].replace("-Wall", "-w") cfg_vars[key] =...
[ "distutils.sysconfig.get_config_vars", "distutils.sysconfig.get_python_lib", "multiprocessing.log_to_stderr", "numpy.get_include", "multiprocessing.cpu_count" ]
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""" Line analysis tools These are intended to be methods generic to emission and absorption (e.g. Equivalent width) """ from __future__ import print_function, absolute_import, division, unicode_literals import numpy as np import os from astropy.modeling import models, fitting def box_ew(spec): """ Boxcar EW c...
[ "numpy.sum", "numpy.roll", "astropy.modeling.models.Gaussian1D", "astropy.modeling.models.GaussianAbsorption1D", "numpy.isfinite", "astropy.modeling.fitting.LevMarLSQFitter", "numpy.min", "numpy.mean", "numpy.max", "numpy.sqrt" ]
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import collections import inspect import typing import numpy as np import pandas as pd import torch from river import base __all__ = ["PyTorch2RiverBase", "PyTorch2RiverRegressor", "PyTorch2RiverClassifier"] class PyTorch2RiverBase(base.Estimator): """An estimator that integrates neural Networks from PyTorch."...
[ "pandas.DataFrame", "torch.mean", "numpy.random.seed", "torch.nn.Sequential", "torch.manual_seed", "torch.Tensor", "inspect.signature", "torch.nn.Linear", "collections.Counter", "torch.no_grad", "torch.nn.Sigmoid" ]
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import numpy as np import math import matplotlib.pyplot as plt import pickle from time import time from numpy.linalg import matrix_rank from numpy.linalg import pinv,inv from numpy.linalg import eig as eig from numpy.linalg import eigh,lstsq from numpy.linalg import matrix_power from scipy.linalg import expm,pinvh,solv...
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from sampling import Sampler import algos import numpy as np from simulation_utils import create_env, get_feedback, run_algo import sys def batch(task, method, N, M, b): if N % b != 0: print('N must be divisible to b') exit(0) B = 20*b simulation_object = create_env(task) d = simulatio...
[ "simulation_utils.get_feedback", "numpy.mean", "numpy.linalg.norm", "simulation_utils.create_env", "simulation_utils.run_algo", "numpy.array", "numpy.random.rand", "sampling.Sampler" ]
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""" Advances in Financial Machine Learning, <NAME> Chapter 2: Financial Data Structures This module contains the functions to help users create structured financial data from raw unstructured data, in the form of time, tick, volume, and dollar bars. These bars are used throughout the text book (Advances in Financial ...
[ "numpy.float", "mlfinlab.data_structures.base_bars.BaseBars.__init__" ]
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