| # Appendix Table 1. Basic Fields |
|
|
| | Field | Category | Description | |
| |--------------------|----------------------|-----------------------------------------------------------------------------| |
| | pubmed_id | data_source | PubMed identifier of the reference | |
| | reference_name | data_source | Title or short name of the reference | |
| | patient_id | sample_information | Internal de-identified patient identifier | |
| | tumor_tissue | sample_information | Tumor sample tissue | |
| | tumor_type_detail | sample_information | Original tumor type name reported in literature | |
| | gene | mutation_information | Gene symbol | |
| | mutation_type | mutation_information | Mutation class | |
| | mutation | mutation_information | Mutation description (HGVS format or amino acid change, e.g., p.G12D) | |
| | position | mutation_information | Mutation position within the peptide sequence (relative position in peptide)| |
| | chromosome | mutation_information | Chromosome number (1–22, X, Y) | |
| | genomic_coord | mutation_information | Genomic coordinate | |
| | ref | mutation_information | Reference allele | |
| | alt | mutation_information | Alternative allele | |
| | mt_peptide | peptide_information | Mutated peptide (8–14mer) | |
| | wt_peptide | peptide_information | Corresponding wild-type peptide | |
| | length | peptide_information | Peptide length | |
| | hla | peptide_information | Restricting HLA allele | |
| | response_type | peptide_information | Response category | |
| | assay_type | assay_information | Immunological assay type, harmonized from original literature into standardized categories. Multiple assay types may apply. | |
| | effector_origin | assay_information | Source of effector T cells as described in the original study | |
| | stimulation_target | assay_information | The target used to stimulate T cells, summarized from experimental description | |
| | presentation_method| assay_information | Experimental method used to demonstrate peptide presentation | |
| |
