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from transformers import CLIPTokenizer from transformers.utils import logging logger = logging.get_logger(__name__) VOCAB_FILES_NAMES = { "vocab_file": "vocab.json", "merges_file": "merges.txt", } PRETRAINED_VOCAB_FILES_MAP = { "vocab_file": { "lb203/LanguageBind-Audio": "https://huggingface.co/l...
oosuhada/multimodal-context-engine
languagebind/audio/tokenization_audio.py
.py
b6246a588befa63b
7
0
""" Phase 1 (Macroscopic) acoustic-distortion metrics from METRICS.md: Mel-Cepstral Distortion (MCD) and F0 Frame Error / Pitch Pearson Correlation between baseline and quantized waveforms for the same prompt. These operate on raw audio rather than codec tokens, so they are naturally codec-agnostic and apply the same ...
AdityaKulshrestha/Speech-Quant
src/evaluation/acoustic_metrics.py
.py
191f7c163bc8b5d2
7
0
""" Token-divergence metrics from METRICS.md: First Divergence Position (FDP) and Cumulative Divergence Rate (D(t)), comparing a quantized model's generated codec tokens against the full-precision baseline for the same prompt. Extended metrics: - codebook_ids_for_tokens: maps flat token positions to SNAC codebook (0...
AdityaKulshrestha/Speech-Quant
src/evaluation/metrics.py
.py
a31489b4a4934da1
7
0
from abc import ABC, abstractmethod from dataclasses import dataclass, field from typing import Any, Optional import torch @dataclass class GenerationOutput: """ Output of the autoregressive generation stage. generated_ids: Complete output from the language model, including prompt tokens. a...
AdityaKulshrestha/Speech-Quant
src/models/base.py
.py
334aaefb96cddf18
7
0
#!/usr/bin/env python3 """Regenerate MANIFEST.sha256 for a skill bundle (deterministic, LF-normalized). Usage: py -3 scripts/regen_manifest.py plugins/manage-math-research-program/skills/manage-math-research-program """ from __future__ import annotations import argparse import hashlib import pathlib import sys ...
xsoc1/rigorous-open-math-research
scripts/regen_manifest.py
.py
d61be84a7d11ec7b
7.39
5
#!/usr/bin/env python3 """Smoke test for the workflow environment doctor (no live codex needed).""" from __future__ import annotations import json import os import subprocess import sys import tempfile from pathlib import Path ROOT = Path(__file__).resolve().parents[1] SCRIPT = ROOT / "plugins" / "math-research-wor...
xsoc1/rigorous-open-math-research
tests/smoke_doctor.py
.py
a54a8807fa29763d
7.89
5
#!/usr/bin/env python3 """Smoke test for lake_build_guard.py. Verifies that the guard: 1. allows a first build check; 2. refuses when a fresh lock exists; 3. releases the lock; 4. refuses when too many recent build attempts are logged; 5. allows again after clearing state. """ from __future__ import annotat...
xsoc1/rigorous-open-math-research
tests/smoke_lake_build_guard.py
.py
db46aa879ef0d038
7.89
5
#!/usr/bin/env python3 """Smoke test: the pipeline gate must ignore nested git repositories. A project may contain a cloned plugin repo (e.g. `_xsoc1_work/`) whose test fixtures intentionally contain failing handoffs/whiteboards. The gate must not validate those as part of the parent project. """ from __future__ impo...
xsoc1/rigorous-open-math-research
tests/smoke_nested_repo.py
.py
7be55b113c6fc9b5
7.89
5
"""Questions about a potential map, answered in bytes rather than megabytes. An agent cannot use a 12 MB grid — it can use "the most negative patch is at these coordinates" or "this residue sits at -3.2 kT/e". ROADMAP.md §6 argues this is where the agent-facing value is, and that moving the volume around is the wrong ...
chemrich/sashimi
src/sashimi/analysis.py
.py
7142065d5613d080
7
0
"""ApbsSolver — the subprocess backend, and the only thing debye replaces.""" from __future__ import annotations from dataclasses import dataclass, field from sashimi.apbs.discover import ApbsBinary, discover_apbs from sashimi.apbs.grid import size_grid from sashimi.apbs.input import build_input, resolved_parameters...
chemrich/sashimi
src/sashimi/apbs/backend.py
.py
8bdb112a0cc1eaa5
7
0
"""Locating the APBS binary. Order: `$SASHIMI_APBS_PATH`, then `shutil.which`, then an active conda environment. APBS is a compiled binary that no Python installer can provide, so it comes from the system package manager (`brew install apbs`, `apt install apbs`) and `which` is the normal answer. The conda fallback is ...
chemrich/sashimi
src/sashimi/apbs/discover.py
.py
0f700a16706dde65
7
0
"""Physical grid intent -> legal APBS mg-auto parameters. This is where `GridSpec`'s physics becomes APBS's arithmetic, and it is the reason `GridSpec` has no `dime`. APBS's multigrid requires dimensions of the form n = c * 2^(l+1) + 1; with the default 4 levels that is n = 32c + 1, i.e. 33, 65, 97, 129, 161, ... A gr...
chemrich/sashimi
src/sashimi/apbs/grid.py
.py
a39fd7d5c3a98c07
7
0
"""FiniteDifferenceRequest -> an mg-auto input file. One template, deliberately: mg-auto with the requested equation, `bcfl sdh`, `chgm spl4`. The FEM, geoflow, BEM, PBAM and PBSAM paths are out of scope, so none of their knobs appear here. Energy needs two elec blocks. A single block reports total electrostatic ener...
chemrich/sashimi
src/sashimi/apbs/input.py
.py
a914cb0d159e4af2
7
0
"""APBS-specific knobs, and the mapping from solver-neutral concepts onto them. Everything here is APBS vocabulary, which is why it lives under `sashimi.apbs` and not in the protocol. `ApbsOptions` is the escape hatch ROADMAP.md §14 Q2 decided on: the portable `SurfaceModel` covers what every backend can mean, and any...
chemrich/sashimi
src/sashimi/apbs/options.py
.py
916f4e0819af90a4
7
0
"""Running APBS. Each solve gets a fresh temporary directory: APBS writes `io.mc` and its DX output into the working directory, so anything less leaks files into the caller's cwd and lets concurrent solves overwrite each other. Success is verified structurally rather than from the exit code, because APBS exits 0 on s...
chemrich/sashimi
src/sashimi/apbs/run.py
.py
edc3297816210ead
7
0
"""Naming and lifetime of the files a solve leaves behind. A potential map is large — 12 MB at 97³, 56 MB at the `max_points` cap — and tools return a *path* to one rather than its contents, because inlining a grid would cost millions of tokens (ROADMAP.md §6). That makes two things the caller's problem, and this modu...
chemrich/sashimi
src/sashimi/artifacts.py
.py
8f7106099bacc0c6
7
0
"""A boundary-element backend that computes nothing. This exists to answer one question: does the protocol admit a BEM solver without APBS-shaped concessions? ROADMAP.md phase 4's exit criterion. It returns a `SurfacePotential` on a sphere-tessellated surface with analytic Debye-Huckel values — physically a toy, struc...
chemrich/sashimi
src/sashimi/bem_stub.py
.py
bc87945566a00a66
7
0
"""What this installation can actually do, and whether a request would work. Two questions an agent should be able to ask before committing to a solve that takes a minute and writes 50 MB: - *What can you do?* Which backends are installed, which surface models they support, which equations they actually solve. Disc...
chemrich/sashimi
src/sashimi/capabilities.py
.py
cee60fcdb94a27bc
7
0
"""DebyeSolver — the clean-room finite-difference solver, at M1. The second backend with no binary and the first that is both in-process *and* in the reference tier: `sashimi.gb` needs nothing installed but approximates the equation, and every backend that discretizes it needs a compiled program. That combination is t...
chemrich/sashimi
src/sashimi/debye/backend.py
.py
4ff75547473ae9eb
7
0
"""Geometry to coefficients: where the solvent is, and how strongly it screens. Two maps, and they are not the same map. The **dielectric** boundary is the van der Waals surface — the union of the atomic spheres — and it lives on the faces between nodes, because a flux through a face is what the finite-volume operator...
chemrich/sashimi
src/sashimi/debye/dielectric.py
.py
d7fbb3d47c951689
7
0
"""Physical grid intent -> a Cartesian lattice debye can coarsen. `GridSpec` has no `dime` because legal multigrid dimensions are an APBS implementation detail (ROADMAP.md section 4). debye has its own, and it is a looser one: APBS's mg-auto requires n = c * 2^(l+1) + 1 with l = 4, so its ladder steps in 32s — 97, 129...
chemrich/sashimi
src/sashimi/debye/grid.py
.py
831bb85f66564698
7
0
"""The discrete operator, and the multigrid that inverts it. `-div(eps grad phi) + kappabar^2 phi = 4 pi l_B rho`, in finite-volume form on a Cartesian grid: for each node, the sum of fluxes through its six faces plus the Boltzmann term equals the charge it carries. Writing it as a flux balance rather than as a differ...
chemrich/sashimi
src/sashimi/debye/linear.py
.py
be4f632a96fd12cf
7
0
"""DelphiSolver — the second backend, and the protocol's first real test. Implements `Solver[FiniteDifferenceRequest]` with no changes to the protocol at all: the same request type APBS takes, the same `SolveResult` out. Everything DelPhi does differently — a cubic grid instead of a multigrid lattice, energies in kT, ...
chemrich/sashimi
src/sashimi/delphi/backend.py
.py
f6c02037be4d533e
7
0
"""Gaussian Cube -> PotentialGrid. DelPhi's native `.phi` map is an unformatted Fortran binary whose record layout depends on the compiler that built it; both flavours can write a Gaussian Cube instead, which is text, self-describing and identical across builds. That makes Cube the only volumetric format the two DelPh...
chemrich/sashimi
src/sashimi/delphi/cube.py
.py
ed3b400f9b391e2c
7
0
"""Locating a DelPhi executable, and deciding which of the two it is. Order: `$SASHIMI_DELPHI_PATH`, then the C++ builds on PATH, then `pydelphi-static`. The explicit variable wins because the C++ program has no canonical installed name — its makefile emits `delphicpp_mac`, `delphicpp_release`, `delphicpp_omp_release`...
chemrich/sashimi
src/sashimi/delphi/discover.py
.py
244308c1ab390f71
7
0
"""Physical grid intent -> legal DelPhi grid parameters. DelPhi's grid is described by two numbers: `scale`, the number of grid points per angstrom, and `gsize`, the number of points along each side. The box is cubic and `gsize` must be odd, so there is exactly one degree of freedom per axis and no multigrid lattice t...
chemrich/sashimi
src/sashimi/delphi/grid.py
.py
c21250ce84d623e1
7
0
"""FiniteDifferenceRequest -> a DelPhi parameter file. Both flavours read the same statement syntax and the same short parameter names, so this is one generator with a `DelphiFlavour` switch rather than two. They genuinely differ in four places, and every one of them is a silent wrong answer rather than an error if it...
chemrich/sashimi
src/sashimi/delphi/input.py
.py
3c6586cc81982f5c
7
0
"""DelPhi-specific knobs, and the mapping from solver-neutral concepts onto them. Everything here is DelPhi vocabulary, which is why it lives under `sashimi.delphi` and not in the protocol — the same rule `sashimi.apbs.options` follows. **The surface-model mapping table.** ROADMAP.md section 14 left "which solver-neu...
chemrich/sashimi
src/sashimi/delphi/options.py
.py
9cd5d4e1272064bb
7
0
"""Running DelPhi. Each solve gets a fresh temporary directory, for the same reason APBS does: both flavours write output next to the parameter file, so anything less leaks files into the caller's cwd and lets concurrent solves collide. As with APBS, success is verified **structurally rather than from the exit code**...
chemrich/sashimi
src/sashimi/delphi/run.py
.py
c8ff152f4c9de12a
7
0
"""OpenDX read/write. Own reader/writer rather than gridData/MDAnalysis: the format is trivial and owning it keeps the dependency tree at numpy. The writer exists so that any backend's output can be exported for PyMOL/ChimeraX — it is not APBS-specific, which is why it lives here rather than under `apbs/`. Layout (ve...
chemrich/sashimi
src/sashimi/dx.py
.py
8d5f8babc8f99562
7
0
"""Sampling a potential map around a sphere, in the directions the error varies over. One owner for a rule two engines need. `sashimi.corpus` grades one backend's field against a closed form; `sashimi.validate` grades backends against each other. Both have to sample the same way or their numbers are not about the same...
chemrich/sashimi
src/sashimi/field.py
.py
882c6bea0af99341
7
0
"""GbSolver — the first backend that is not a subprocess. Two firsts, and they are related. This is the first backend that *approximates* the Poisson-Boltzmann equation rather than discretizing it, so it is the first to declare `AccuracyTier.APPROXIMATE` and the reason that enum exists. And it is the first solver that...
chemrich/sashimi
src/sashimi/gb/backend.py
.py
4bb8f70f187ef142
7
0
"""Still's equation, and the Debye screening that puts salt into it. Given effective radii, the polar solvation energy is a double sum over atom pairs with an interpolating denominator that reduces to the Born formula for a single atom and to Coulomb's law at long range: f_GB(i,j) = sqrt(r_ij^2 + R_i R_j exp(-r_i...
chemrich/sashimi
src/sashimi/gb/energy.py
.py
52ef2631dce0f75c
7
0
"""Effective Born radii by pairwise descreening. The one quantity Generalized Born is really about. An atom's effective radius is its distance to the dielectric boundary *as seen through the rest of the solute*: an atom on the surface keeps nearly its van der Waals radius, one buried in the core acquires a large one a...
chemrich/sashimi
src/sashimi/gb/radii.py
.py
6991611d31ad2aa6
7
0
"""PQR read/write. Own parser rather than a dependency: the format is trivial and owning it keeps the dependency tree at numpy. PQR is whitespace-delimited in practice (unlike PDB it is not column-fixed, because charges and radii overflow their columns), so the fields are recovered positionally from the end of the lin...
chemrich/sashimi
src/sashimi/pqr.py
.py
01a539dad2de1339
7
0
"""Structure preparation: PDB -> PQR, via pdb2pqr. A subprocess wrapper, not a use of pdb2pqr's Python API. Its internals are not a stability contract, and process isolation means a pdb2pqr hang cannot take down the MCP server. pdb2pqr rebuilds structures — it adds missing heavy atoms, debumps clashes and places hydr...
chemrich/sashimi
src/sashimi/prep.py
.py
d20bdb4d149aaf65
7
0
"""The bounded structured report that moves between Ralph rounds.""" from __future__ import annotations import json from dataclasses import dataclass from typing import Literal from pydantic import BaseModel, field_validator, model_validator Status = Literal["continue", "complete", "blocked"] # A report is the onl...
BluePlanetSlumberer/ralph-loop
src/ralph_loop/report.py
.py
eb474c98493bb219
7
0
"""The ralph tool: a fixed fresh-agent loop exposed to any LangChain agent.""" from __future__ import annotations from pathlib import Path from typing import Callable from langchain_core.tools import BaseTool from pydantic import BaseModel, Field, field_validator from .report import RalphReport, RalphRun from .work...
BluePlanetSlumberer/ralph-loop
src/ralph_loop/tool.py
.py
f77b22f667262a9b
7
0
"""Each round's fresh child: one callable that works and reports back.""" from __future__ import annotations from typing import Protocol from .report import RalphReport class FreshWorker(Protocol): """Runs one fresh child per round. Every call must be a brand-new agent: no parent conversation, no prior ...
BluePlanetSlumberer/ralph-loop
src/ralph_loop/worker.py
.py
79a9f9a2b0627a2a
7
0
"""TLC Taxi Zone Bronze/Silver1 적재 DAG. 원래 schedule=None(수동 트리거) "1회성" DAG였는데, ingest_taxi_zone_shapefile이 ETag 기반 변경 감지를 갖추면서(src/taxi_zone/bronze.py 참고) 매달 다시 돌려도 안전해졌다 — 원본이 그대로면 다운로드도, Silver1 재생성도, Asset emit도 전부 스킵한다. Wayback Machine으로 실측한 실제 변경 주기가 1~2년에 한 번이라(2024-03~2024-10 무변경, 다음 변경 2026-02), 매달 확인하면 탐지 지연 ...
softeerbootcamp-8th/DE_team5-three-idiots
dags/taxi_zone_pipeline.py
.py
1c89628e44960fc0
7
0
""" DAG: toll_silver_gold_pipeline toll_bronze_pipeline이 요금표/시설목록/CBD 폴리곤을 갱신하거나 (Asset("toll_bronze_updated")), lion_pipeline이 분기 LION을 갱신할 때 (Asset("lion_bronze_updated")) Silver2 매핑(lion_facility, lion_cbd)을 다시 만들고 Gold 값을 재계산해서 RDS에 적재한다. 이름을 "gold_pipeline"이 아니라 "silver_gold_pipeline"으로 붙인 이유는 실제로 Silver2 매핑 태스크가...
softeerbootcamp-8th/DE_team5-three-idiots
dags/toll_silver_gold_pipeline.py
.py
7a7d0224af1efdd2
7
0
"""index.html에 박아넣을 DATA(JSON) 블록을 생성한다. 맨하튼(borough_code=="1") routable 세그먼트만 쓴다 - 기존 정적 데모의 background_coords 세그먼트 수(19,981)와 정확히 일치해서, 원래도 이 필터로 만들어졌던 것으로 보인다. background_coords: 세그먼트별 지도 렌더링용 좌표(회색 배경 도로망, 기존 포맷 그대로 유지 - JS 렌더링 코드를 안 건드리기 위함). graph: 브라우저에서 클릭 두 점 사이 실시간 경로 탐색(Dijkstra)에 쓸 그래프 - 노드 좌표 + 엣지(구간 길이...
softeerbootcamp-8th/DE_team5-three-idiots
demo/build_route_map_data.py
.py
455b857c16d4892f
7
0
""" Type1(소요시간) 긴급 스펙 추정 백필 스크립트 (청크 버전) 배경: 도로 속도 원천(Socrata) API 호출 자체가 실패해 실측 데이터가 안 들어오는 동안, segment_metrics_type1에 값이 없는 (segment_id, time) 슬롯이 많다 - Fresh Exact/Historical AVG 둘 다 못 찾고 코드 상수(45초)로 응답이 떨어지는 상태다(src/serving/nav_lookup.py 참고). 원천 API가 복구될 때까지 임시로, 도로 스펙(길이 ÷ 제한속도)으로 추정한 통과시간을 avg 컬럼에 채워 넣어 최소한 세그먼트별...
softeerbootcamp-8th/DE_team5-three-idiots
scripts/backfill_type1_spec_avg.py
.py
f300f61dd8da64ac
7.5
0
""" RDS(PostgreSQL) 서빙 테이블 생성 스크립트 (idempotent) 배포 시 한 번 실행한다. 이미 테이블이 있으면 건너뛴다. DynamoDB 사용을 완전히 중단하면서 예전 create_dynamodb_tables.py는 삭제했다. python scripts/create_rds_tables.py """ from __future__ import annotations import psycopg2 from src.common.config import ( SERVING_TABLE_TYPE1, SERVING_TABLE_TYPE1...
softeerbootcamp-8th/DE_team5-three-idiots
scripts/create_rds_tables.py
.py
3f1ddc751013fd35
7
0
""" RDS GLOBAL 기본값 시딩 스크립트 fallback 체인의 마지막 안전망(설계 문서 7절 3단계)이다. 파이프라인이 한 번도 성공적으로 안 돌았어도 이 값이 있어야 API가 "무조건 응답"할 수 있으므로, 파이프라인 코드가 아니라 배포 시점에 이 스크립트로 수동 시딩한다. DynamoDB 사용을 완전히 중단하면서 예전 seed_dynamodb_defaults.py는 삭제했다. python scripts/seed_rds_defaults.py type1(시간)은 여기서 시딩할 GLOBAL 기본값이 없다 - src/serving/nav_lookup...
softeerbootcamp-8th/DE_team5-three-idiots
scripts/seed_rds_defaults.py
.py
a095e3adc8cd2281
7
0
""" EMR Serverless 잡 엔트리포인트 — Silver2(LION 세그먼트 단위) -> type1(시간) RDS upsert nav_time_silver_job.py가 만들어둔 Silver2 parquet을 읽어서 Gold1(필터) -> Gold2(버킷 평균+시간 계산 -> 검증 -> RDS upsert)를 처리한다 (docs/superpowers/specs/2026-08-24-split-silver-gold-tasks-design.md 참고). 인자: --silver2-path : nav_time_silver_job.py가 저장한 Silver2 ...
softeerbootcamp-8th/DE_team5-three-idiots
spark_jobs/nav_time_gold_job.py
.py
50ab7294b0e8dbf4
7
0
""" EMR Serverless 잡 엔트리포인트 — 속도 Bronze -> Silver2(LION 세그먼트 단위) Bronze -> Silver1(정제) -> Silver2(LION 세그먼트 매핑)까지만 처리하고 결과를 S3에 parquet로 남긴다. 이어지는 Gold1/Gold2는 nav_time_gold_job.py가 이 결과를 읽어서 별도 EMR job으로 처리한다 - 하나로 묶여있던 job을 Silver/Gold 두 Airflow task로 나눠서, 실패했을 때 Airflow 화면에서 바로 어느 단계인지 알 수 있게 하기 위함 (docs/superpower...
softeerbootcamp-8th/DE_team5-three-idiots
spark_jobs/nav_time_silver_job.py
.py
cec4b2d4057e97d9
7
0
""" Slack 장애 알림 태스크가 재시도를 전부 소진하고 최종 실패했을 때만 호출된다(Airflow의 on_failure_callback은 매 시도가 아니라 "이 태스크 인스턴스가 더 이상 재시도 안 하고 최종 실패로 확정된 시점"에 한 번만 불린다). DAG의 default_args에 이렇게 걸어서 쓴다: from src.common.alerts import notify_slack_failure default_args = { ... "on_failure_callback": notify_slack_failure, ...
softeerbootcamp-8th/DE_team5-three-idiots
src/common/alerts.py
.py
8fca117b05b0864c
7
0
""" EMR Serverless Spark 잡 제출/대기 헬퍼 Airflow worker 프로세스 안에서 SparkSession을 직접 여는 대신, 변환 로직을 담은 스크립트(spark_jobs/*.py)를 EMR Serverless에 제출하고 완료를 기다린다. src/ 전체를 zip으로 묶어 --py-files로 넘겨서, 잡 스크립트가 src.tlc.* 등 기존 순수 변환 함수를 그대로 import해서 쓸 수 있게 한다 — 변환 로직을 spark_jobs 쪽에 복제하지 않기 위함이다. 우리 Spark job(nav_time_silver_job.py, nav_t...
softeerbootcamp-8th/DE_team5-three-idiots
src/common/emr_serverless.py
.py
e1e70473acff11f5
7
0
"""공통 파일 형식 검증 — 도메인을 몰라도 되는 순수 포맷 체크만 담당한다. Bronze에 올리기 직전에 "이 파일이 애초에 열리는가"를 확인하는 용도다. 데이터 의미(taxi_type별 필수 컬럼, 값 범위 등)는 각 도메인의 GX Expectation(src/tlc/expectations.py, src/speed/expectations.py 등)이 맡는다 — 여긴 형식만 본다(LION/Taxi Zone의 zip 검증, TLC/Speed의 GX 검증처럼 이미 각 도메인에 흩어져 있던 "파일이 파싱되는가" 체크를 한 곳으로 모은 것). 전부 검증 실패 시 예외...
softeerbootcamp-8th/DE_team5-three-idiots
src/common/file_validation.py
.py
78910d085df7c4fa
7
0
""" Gold 서빙 데이터의 "마지막으로 성공한 값" 스냅샷. RDS(src/common/rds.py)가 완전히 응답 불가능할 때 쓰는 폴백 (src/serving/nav_lookup.py 참고) - S3는 이미 멀티 AZ로 복제되는 관리형 스토리지라 RDS(Multi-AZ 안 쓰면 단일 인스턴스)보다 죽기 어렵다. 세그먼트당 AVG/SPEC/가장 최근 exact 값만 담는다(하루치 버킷 이력 전부는 안 담음 - 스냅샷을 쓰는 시점엔 오래된 실측값도 어차피 freshness 기준을 넘겨 못 쓰므로 최신 1개면 충분하고, 그만큼 스냅샷 크기가 작아진다). Gol...
softeerbootcamp-8th/DE_team5-three-idiots
src/common/gold_snapshot.py
.py
96c7ade830447012
7
0
"""GX(Great Expectations) 공통 러너. Spark/pandas DataFrame과 Expectation 목록을 받아 검증을 실행하고, 결과를 dict 리스트로 반환하는 것까지만 책임진다. 검증 실패 시 어떻게 반응할지 (파일 제외/로그/알림)는 호출하는 도메인 코드가 결정한다. 반환하는 각 dict는 success/expectation_type/kwargs/result에 더해 exception_info도 포함한다 — GX가 메트릭 계산 중 내부적으로 예외를 잡은 경우(예: 컬럼 타입 불일치) success=False에 result={}만 남고 ...
softeerbootcamp-8th/DE_team5-three-idiots
src/common/gx.py
.py
61fe7391e2b71cd2
7
0
"""공통 유틸.""" import re def save_parquet(df, out_dir, filename="data.parquet"): """DataFrame을 parquet으로 저장한다. out_dir는 S3Path다 — S3는 업로드가 완료된 객체만 노출하므로(부분 쓰기가 안 보임) 로컬 파일시스템에서 하던 tmp-then-rename 흉내가 필요 없다. pandas가 S3Path를 로컬 캐시 경로로 오해하지 않도록 str()로 넘긴다. """ out_dir.mkdir(parents=True, exist_ok...
softeerbootcamp-8th/DE_team5-three-idiots
src/common/utils.py
.py
11dddbefe5c63b72
7
0
""" Bronze ingestion: NYC DCP LION (Single Line Street Base Map) 주의: LION은 Socrata에서 "non-tabular"(지도 전용) 자산으로 등록되어 있어서 $limit/$offset 같은 행 단위 API 조회가 불가능하다 (실제로 시도하면 "no row or column access to non-tabular tables" 에러가 남). 그래서 taxi_zone의 shapefile과 동일한 방식으로, NYC DCP가 제공하는 파일(zip) 원본을 통째로 받아서 그대로 압축 해제한다. 분기마다 새 버전이 나...
softeerbootcamp-8th/DE_team5-three-idiots
src/lion/bronze.py
.py
bf37d87c004ef80a
7
0
""" Gold2 — type2(길이) 최종 산출물을 RDS 포맷으로 변환하고 upsert한다. RDS는 세그먼트당 항목 1개(length_ft)만 저장한다 — 길이는 시간에 따라 변하지 않으므로 버킷을 반복 저장하지 않는다(설계 문서 6절). """ from __future__ import annotations import statistics from datetime import date import pandas as pd from src.common import gold_snapshot from src.common.config import GLOBAL_P...
softeerbootcamp-8th/DE_team5-three-idiots
src/nav_length/gold2.py
.py
97a839f143845a1e
7
0
""" Gold2 — type1(시간) 최종 산출물 계산 + RDS 포맷/upsert 30분 버킷 하나엔 그 30분 동안 들어온 5분 단위 판독값이 최대 6개 있다. 시간순으로 1,2,...,n번째 판독값에 1:2:...:n 비율로 증가하는 가중치(최근 값이 가장 큰 비중)를 준 가중평균 속도를 구하고, LION 길이(length_ft)로 나눠 세그먼트별 통행시간(초)을 구한다. 과거 평균(avg)은 세그먼트 전체가 아니라 "이 (segment_id, time) 슬롯" 단위다 - 한 행 안에 오늘 실측값(value)과 그 슬롯의 과거 평균(avg)이 같이 있어서,...
softeerbootcamp-8th/DE_team5-three-idiots
src/nav_time/gold2.py
.py
8d14d9e070a2a299
7
0
"""Type3(승차 수) 서빙 조회 라이브러리. 원래는 이 모듈 자체가 독립 FastAPI 앱(및 Lambda)이었지만, 여러 타입의 Lambda를 nav_api.py 하나로 통합하면서(docs/superpowers/plans/ 2026-08-23-unified-navigation-api.md) 실제 배포는 src/serving/lambda_handler.py -> nav_api.py 경로만 쓰게 됐다. 이 모듈은 이제 nav_api.py가 가져다 쓰는 get_type3_values() 조회 로직만 담은 라이브러리다 - 자체 FastAPI 앱/엔드포인트는 어디서도...
softeerbootcamp-8th/DE_team5-three-idiots
src/serving/api.py
.py
894e87c1c2e4c09a
7
0
""" 서빙 API — 세그먼트 지표 조회 라우팅은 얇게 두고, 실제 조회/fallback 로직은 src/serving/nav_lookup.py에 위임한다. 로컬 실행: uvicorn src.serving.nav_api:app --reload --port 8001 """ from __future__ import annotations from datetime import datetime from typing import Literal from fastapi import FastAPI, Request from fastapi.middleware.cors impor...
softeerbootcamp-8th/DE_team5-three-idiots
src/serving/nav_api.py
.py
ef6fa619bbc191d5
7
0
""" 세그먼트 지표 조회 + fallback 체인 "무조건 응답"(설계 문서 7절)을 구현하는 핵심 모듈. 키가 없는 경우와 RDS 호출 자체가 실패(예외)하는 경우를 구분하지 않고 똑같이 다음 fallback 단계로 넘어간다. Type1(시간)은 segment_metrics_type1(segment_id+time 복합키, src/common/ config.py 참고)로 서빙한다. 한 행 안에 오늘 실측값(value)과 그 시간대의 과거 평균(avg)을 같이 들고 있어서, "뉴욕 기준 오늘 값이 있으면 그걸, 없으면 평균을" 판단이 조회 한 번으로 끝난다. Dy...
softeerbootcamp-8th/DE_team5-three-idiots
src/serving/nav_lookup.py
.py
8d1562dcb6c482ff
7
0
#!/usr/bin/env python3 """A14 · 从 NCCL 的 TUNING 日志里统计「分块字节数不被 16 整除」的**按字节加权**占比。 背景:E18 §10 证明了机制 —— NCCL 的 Simple kernel 按 16 字节(128 位)向量化访存, **每 rank 分块字节数只要不能被 16 整除,就整段退化成标量路径,all_gather 掉 12×**。 但那是在微基准上证明的。**还没证明 verl 的 ZeRO-3 真的撞在上面** ⇒ 这就是 A14。 ⚠️⚠️ **必须按字节加权,不能按调用次数** —— 小张量再多也解释不了 6.02×。 (一万次 128 字节的错位调...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/analyze_allgather_alignment.py
.py
acca5678636d5cc0
7.15
1
#!/usr/bin/env python3 """E01 / A5 · 从 nsys 的 sqlite 里把「一步的时间去哪了」拆开。 ★ 为什么不用 `nsys stats` 的现成报告就完事: 它给的是**全局**的 kernel 排行,而我们要回答的是两条 track 共用的那个问题 —— **每张卡上、每个进程各自忙了多久、忙在什么类型的活上、剩下的时间在等谁**。 `trainer` 和 `rollout` 在同一份 trace 里,不按进程拆开就分不出 update_actor 和 gen。 两种模式: ① 无 NVTX(旧 trace):给「算子类型 × 进程 × 卡」的分解 + **kernel 级占空比*...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/analyze_nsys_step.py
.py
e7135f38da26d0ce
7.15
1
#!/usr/bin/env python """上线候选的**晋级闸**:一条跑够不够格被当成上线候选。 python scripts/candidate_gate.py checkpoints/grpo/<run> # 查 python scripts/candidate_gate.py checkpoints/grpo/<run> --strict # 不够格就非零退出 ★★★ 为什么约束加在**晋级**上,而不是**起跑**上(2026-08-19 定) infra 一直在用 RL 跑**短的精度/吞吐实验**(60 步就够)。 把"必须跑到没梯度"加在起跑上,会**当场挡住他们**,...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/candidate_gate.py
.py
bb13cc55f9f060f8
7.15
1
"""flash-attn 的**反向**数值判据 —— 换轮子/换机器后必跑。 2026-08-17 的教训:一个 sm_120 轮子可以**前向三项全过、反向全错**。 前向对不代表反向对,而反向错在 RL 里的表现是"训练正常跑完但什么都没学到"。 flash_attn_func 反向 dq/dk/dv 全 nan ⇒ verl 打 WARN 跳过 optimizer.step flash_attn_varlen_func 反向 有限但恒为 0 ⇒ ★ 静默,没有任何报错 用法: python scripts/check_flash_attn_backwar...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/check_flash_attn_backward.py
.py
1f2665efc4a136d5
7.15
1
#!/usr/bin/env python """跑中盯「拒绝能力有没有塌」—— 读 rollout dump,报最长连续零 defer 步数。 python scripts/defer_watch.py checkpoints/grpo/<run> # 打一行摘要 python scripts/defer_watch.py checkpoints/grpo/<run> --streak # 只打数字(给守卫用) ★★ 为什么需要它(2026-08-19) `defer` 塌陷是**不可逆**的:`[实测]` lr 1e-4 那跑,9 条该 defer 的 EVAL 题 全部掉到 0.000,...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/defer_watch.py
.py
f55bdf7d44710361
7.15
1
#!/usr/bin/env python """磁盘盘点:把产物按「能不能删」分类,并解释理由。 python scripts/disk_report.py # 只报告,不动任何文件 python scripts/disk_report.py --plan # 额外打印可执行的删除命令(仍然不执行) ★ 为什么要有这个脚本(2026-08-18) 本项目丢过一次最终 ckpt(M7,27 GB 写盘撞上配额被静默截断,训练日志里一个字都没有)。 纪律是「判断空间要用写入探针,不能信 df」——但更前面一步是: **先知道 300 GB 里哪些是死的。** 手工 du 一次要十分钟...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/disk_report.py
.py
8d084e3124488e3e
7.15
1
"""给本项目的 venv 安装一个 `flash_attn.bert_padding` 垫片。 ## ⛔ 已退役(2026-08-13 晚)——新机器别再跑这个脚本 已找到并装上完全匹配的**真 flash-attn 预编译轮子**(零编译,sm_120 kernel 经 cuobjdump 验证): uv pip install /workspace/wheels/flash_attn-2.8.3+cu128torch2.9-cp312-cp312-linux_x86_64.whl # 或重新下载: # https://github.com/mjun0812/flash-attention-preb...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/install_flash_attn_shim.py
.py
ef5244c7e1b424d3
7.15
1
"""一条命令把 SFT / RL 的观测面板建到 W&B 上(可重跑,幂等覆盖同名 view)。 python scripts/make_wandb_panels.py # 建 SFT + RL 两个 view python scripts/make_wandb_panels.py --only sft ★ 为什么要脚本而不是在网页上拖:**面板是判据的一部分**。 手拖的面板换个人、换台机器就没了,而"该看哪几条线、红线在哪"是要跟着仓库走的。 这份脚本和 `docs/syncopate/06-rl-run-protocol.md H 部分` 是同一件事的两种形态 —— 文档说为什么,脚...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/make_wandb_panels.py
.py
7d438e98ac0af241
7.15
1
#!/usr/bin/env python3 """从 verl 的训练日志里把 timing 行解析成「每 global step」的口径。 ★ 为什么需要它(2026-08-17 建): fully_async 的每条 timing 行**覆盖多个 global step**(本项目 sync_every=4 ⇒ 4 步一行), 直接读日志里的绝对秒数会**报错 4 倍** —— E18 §7-5 记着这个坑,此前已经犯过一次。 ⇒ 把「除以覆盖步数」这件事固化进工具,别再靠人记得。 用法: python scripts/parse_fully_async_timing.py logs/rl_v13...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/parse_fully_async_timing.py
.py
d51f331d092cfb67
7.15
1
#!/usr/bin/env python """O-2a · 先试最便宜的那条路:**改 `answer_fields` 契约,能不能不训练就说人话**。 python scripts/probe_answer_fields.py ★ 为什么先做这个(守则⑤ 先测量后动手): O-1 定性里那条 —— 「谢谢,辛苦了」→ `{"summary": "无操作"}` —— 是**两件事叠加**: ① 表达退化(要 OPD) ② `answer_fields` 只给了 `summary`「本次任务的结论」这一个字段, **逼着模型把任何回应都塞进"任务结论"的形状里** ⇒ ② 是 pr...
ChaoyuWang04/Syncopate_Async_AgenticRL
scripts/probe_answer_fields.py
.py
a59d35ba217db673
7.15
1
"""CLI entry point for the hermes-agent ACP adapter. Loads environment variables from ``~/.hermes/.env``, configures logging to write to stderr (so stdout is reserved for ACP JSON-RPC transport), and starts the ACP agent server. Usage:: python -m acp_adapter.entry # or hermes acp # or hermes-acp ...
6TcbpVB4h7jSZWz2/NousResearch__hermes-agent
acp_adapter/entry.py
.py
93dca1ab622b5e3d
7
0
"""ACP permission bridging for Hermes dangerous-command approvals.""" from __future__ import annotations import asyncio import logging from concurrent.futures import TimeoutError as FutureTimeout from itertools import count from typing import Callable from acp.schema import ( AllowedOutcome, PermissionOption...
6TcbpVB4h7jSZWz2/NousResearch__hermes-agent
acp_adapter/permissions.py
.py
cff95b8e8a6be936
7
0
"""Ambient session-accounting context for auxiliary LLM calls. Auxiliary calls (vision, compression, title generation, web_extract, session_search, ...) funnel through ``agent.auxiliary_client`` which has no session handle — so their token usage was historically discarded, leaving dashboard analytics blind to aux mode...
6TcbpVB4h7jSZWz2/NousResearch__hermes-agent
agent/aux_accounting.py
.py
1ce741a528bbb918
7
0
"""Context-local state for delegate_task child execution. The parent Hermes process may itself be a Kanban dispatcher worker with HERMES_KANBAN_* variables in process env. delegate_task children run inside the same Python process, but they are not dispatcher-owned Kanban workers. This module lets code paths that resol...
6TcbpVB4h7jSZWz2/NousResearch__hermes-agent
agent/delegation_context.py
.py
81038bcaa0913b4f
7
0
#!/usr/bin/env python3 """Paired significance test over the matched grid. python Paper/neurips2026/tools/significance.py results/runs_grid "BaCP leads 35 of 48 cells" is a weak way to state the result: 35/48 is not far from a coin flip by eye, and a reader has no way to judge it. This computes the test that answe...
HaroonKhawaja/BaCP
Paper/neurips2026/workshop/tools/significance.py
.py
1e04f0a86e8155e4
7
0
"""VGG (Simonyan & Zisserman, "Very Deep Convolutional Networks for Large-Scale Image Recognition", ICLR 2015, arXiv 1409.1556). vgg11/vgg19 are configurations A and E of their Table 1. State-dict keys match torchvision's VGG exactly, so torchvision's ImageNet checkpoints load directly. The three-layer classifier MLP ...
HaroonKhawaja/BaCP
project/models/vgg.py
.py
9d868f9b2e119999
7
0
"""L8 -- the baseline/pruning training loop, end to end on a tiny model.""" import pytest import torch from pruning_factory import check_model_sparsity pytestmark = pytest.mark.slow PRUNE = dict(pruning_type="magnitude", target_sparsity=0.5, sparsity_scheduler="cubic") def _trainer(initialized_args, **over): ...
HaroonKhawaja/BaCP
project/tests/test_baseline_loop.py
.py
60633a3fbb4df7ac
7.5
0
"""L6a -- DyReLU phasing (EAST component 1). EAST's first trick: run DyReLU early so the network explores a richer activation family, then anneal back to plain ReLU so the extra hyperfunction parameters are gone by the end of training (Li et al. 2024, arXiv 2411.13545; DyReLU from Chen et al. 2020, ECCV). The anneal ...
HaroonKhawaja/BaCP
project/tests/test_dyrelu_phasing.py
.py
7d21db8862a60c10
7.5
0
"""L6c -- the EAST pruner (cyclic sparsity, EAST component 3). Every test in this file guards a defect that made EAST inert. Before these fixes the pruner could not even be constructed, and if it had been, its mask update was an unconditional early return -- so no EAST result has ever existed. Reference: Li et al. 20...
HaroonKhawaja/BaCP
project/tests/test_east_pruner.py
.py
12fe9188e2b2a6bf
7.5
0
"""L0 -- static guards. No model, no data, no GPU. Runs in well under a second. These are the cheapest tests in the suite and they catch the most expensive class of bug in this codebase: a name that does not exist on a code path nobody has run recently. Five of the eight blocking crashes on `main` are exactly that, an...
HaroonKhawaja/BaCP
project/tests/test_imports.py
.py
45221ded2e507b3f
7.5
0
"""L4b -- WANDA pruner. The point of these tests is narrow and specific: prove that WANDA is not magnitude pruning wearing a different label. That is the failure mode that matters, because the submitted paper reports a WANDA column produced by code that was 133 commented-out lines containing a syntax error -- so whate...
HaroonKhawaja/BaCP
project/tests/test_wanda.py
.py
ecd846259555804a
7.5
0
"""L6b -- EAST weight sharing (EAST component 2). Promotes the notebook's `weight_sharing_test` -- which compared id(module.weight) and *printed* a check mark -- into real assertions, and pins the checkpoint ordering hazard that the printed version could not have caught. Reference: Li et al. 2024, arXiv 2411.13545. "...
HaroonKhawaja/BaCP
project/tests/test_weight_sharing.py
.py
c152fccfefe94c78
7.5
0
"""In-memory synthetic image dataset -- no downloads, no disk, no /dbfs. Deliberately builds real ``PIL.Image`` objects and pushes them through the real ``dataset_factory.get_train_transform`` + ``AugmentData``, so the tests exercise the actual augmentation recipe and the actual ``default_collate`` behaviour rather th...
HaroonKhawaja/BaCP
project/tests/tiny_data.py
.py
5fbe1c0200e03f21
7.5
0
import os import torch import torch.nn as nn import contextlib from tqdm import tqdm from torch.amp import GradScaler, autocast from dataclasses import dataclass from training_utils import ( amp_dtype_and_scaler, _finalize_run, _initialize_all, _initialize_logs, _initialize_optimizer, _optimize...
HaroonKhawaja/BaCP
project/trainer.py
.py
a9cb4311964f01ec
7
0
import os import torch import numpy as np import random import matplotlib.pyplot as plt from torchvision.utils import make_grid import pickle def set_seed(seed=42): random.seed(seed) np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed_all(seed) torch.backends.cudnn.determi...
HaroonKhawaja/BaCP
project/utils.py
.py
602b58d806264c2c
7
0
from __future__ import annotations import math import random from dataclasses import dataclass @dataclass(frozen=True, slots=True) class DemandProfile: name: str start_hour: float arrivals_per_minute: float PROFILES = { "morning": DemandProfile("Morning rush", 8.0, 22.0), "lunch": DemandProfile...
oosuhada/elevator-queue-lab
app/demand.py
.py
b77b22ed6ec9248f
7
0
"""Shared config for the web-bridge server / CLI / MCP. Reads ~/.config/web-bridge/config.json (chmod 600). The token gates every HTTP and WebSocket call. Environment variables override the file for one-off use. """ from __future__ import annotations import json import os from pathlib import Path CONFIG_PATH = Path(...
ghbhiee/web-bridge
bridge/config.py
.py
f822d70afaccabf8
7
0
#!/usr/bin/env python3 """Render the extension side panel into a plain web page for testing. Chrome forbids scripting another extension's pages, so the side panel is the one part of web-bridge that cannot be driven through the bridge itself. This builds an equivalent page — the REAL panel.html and panel.js, with only ...
ghbhiee/web-bridge
bridge/panel_harness.py
.py
8ff298f0dcd87240
7
0
"""User scripts — the page-beauty side of the panel. Deliberately NOT capabilities. They look similar (both are JS injected into a page) but they serve different people and must not be mixed: capabilities/ written BY the agent, FOR the agent. Carry parameter declarations, kinds, descriptions the...
ghbhiee/web-bridge
bridge/user_scripts.py
.py
e591180ae90e275f
7
0
"""Runtime bootstrap helpers for CLI commands.""" from __future__ import annotations import logging import subprocess import time from dataclasses import dataclass from pathlib import Path import jj_stack import jj_stack.console as console import jj_stack.ui as ui from jj_stack.config import AppConfig, load_config f...
bos/jj-stack
src/jj_stack/bootstrap.py
.py
198f43f133aee23b
7.24
2
"""Shared cleanup command models, persistence, and rendering helpers.""" from __future__ import annotations from dataclasses import dataclass from typing import Literal from jj_stack.bootstrap import CommandContext from jj_stack.github.resolution import ( GithubTarget, UnresolvedGithubTarget, ) from jj_stack...
bos/jj-stack
src/jj_stack/commands/cleanup/shared.py
.py
bb77245e4a1637d7
7.24
2
"""Shared data structures for the merge command.""" from __future__ import annotations from dataclasses import dataclass from typing import Literal from jj_stack.bootstrap import CommandContext from jj_stack.github.resolution import GithubRepoAddress from jj_stack.models.tracking import PRIdentity from jj_stack.stac...
bos/jj-stack
src/jj_stack/commands/merge/models.py
.py
cfbe3472954c584b
7.24
2
"""Merge preconditions checked against fresh PR facts.""" from __future__ import annotations import jj_stack.ui as ui from jj_stack.commands.merge.models import MergeChange from jj_stack.formatting import format_pr_number from jj_stack.github.resolution import GithubRepoAddress from jj_stack.identifiers import short_...
bos/jj-stack
src/jj_stack/commands/merge/preconditions.py
.py
fb6cd2aed8134ec2
7.24
2
"""Prevent GitHub's reachability-based pull request auto-close.""" from __future__ import annotations import jj_stack.ui as ui from jj_stack.concurrency import DEFAULT_BOUNDED_CONCURRENCY, run_bounded_tasks from jj_stack.errors import CliError from jj_stack.formatting import format_pr_label from jj_stack.github.clien...
bos/jj-stack
src/jj_stack/commands/submit/auto_close.py
.py
53f813a4c57718d0
7.24
2
"""Build default pull request text from a jj change description.""" from __future__ import annotations from markdown_it import MarkdownIt _MARKDOWN = MarkdownIt("commonmark").enable("table") def default_pr_body(description: str, *, template: str) -> str: """Return the default PR body, unfolding Markdown soft l...
bos/jj-stack
src/jj_stack/commands/submit/default_pr_text.py
.py
7f09b21e934101f7
7.24
2
"""Shared data structures for the submit command.""" from __future__ import annotations from dataclasses import dataclass from pathlib import Path from typing import Literal, NamedTuple, Protocol from jj_stack.jj.client import JjClient from jj_stack.models.git import GitRemote from jj_stack.models.github import Gith...
bos/jj-stack
src/jj_stack/commands/submit/models.py
.py
61f9ba01c4f34188
7.24
2
"""Render submit command output.""" from __future__ import annotations import jj_stack.console as console import jj_stack.ui as ui from jj_stack.formatting import ( format_pr_label, render_commit_blocks, render_commit_lines, ) from jj_stack.jj.client import JjClient from jj_stack.models.stack import Local...
bos/jj-stack
src/jj_stack/commands/submit/render.py
.py
c3c6941d7b286fe8
7.24
2
"""Configuration loading for `jj-stack`.""" from __future__ import annotations import difflib import logging import tomllib from collections.abc import Mapping from typing import Literal from pydantic import BaseModel, ConfigDict, Field, ValidationError, field_validator from jj_stack.errors import CliError from jj_...
bos/jj-stack
src/jj_stack/config.py
.py
63779f16c4920fbf
7.24
2
#!/usr/bin/env python3 """Stop-hook guard: flag a reply that ENDS by offering to do work. A cop-out offer converts work you have already been authorized to do back into a request for permission -- "say the word and I'll push", "want me to kick off the re-run?". It reads as courtesy and delivers nothing: the work does ...
Morrison-Lab/ai-config
hooks/flag-cop-out-offer.py
.py
8a0e40e37d35e425
7.15
1
#!/usr/bin/env python3 """PreToolUse guard: surface a write-capable `Agent` launch with no `isolation`. We decided that subagent worktrees are **assigned by the orchestrator** -- `isolation` set on the `Agent` call -- rather than left to each agent to organize for itself. Then `isolation: "worktree"` reclaimed an agen...
Morrison-Lab/ai-config
hooks/flag-unassigned-worktree.py
.py
a097518d2e4a55cf
7.15
1
#!/usr/bin/env python3 """PreToolUse guard: a branch switch and a later mutating git command, unchained. ## The incident One Bash call carried this, on two lines: git checkout feat/some-branch -q && git merge --ff-only origin/feat/some-branch -q git merge origin/main -m "Merge branch 'main' into feat/some-br...
Morrison-Lab/ai-config
hooks/flag-unchained-branch-switch.py
.py
7a32b9cb68fb88e3
7.15
1