text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
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# -*- coding: utf-8 -*-
"""Typer-based CLI for phabfive."""
import os
import re
import sys
from importlib.metadata import version
from typing import Optional
# Disable Typer's Rich formatting for help text to remove fancy boxes
os.environ.setdefault("TYPER_USE_RICH", "0")
import typer
from phabfive.cli.diffusion im... | dynamist/phabfive | phabfive/cli/__init__.py | .py | abdd8796be96e3a5 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Diffusion commands for phabfive CLI."""
import sys
from typing import Optional
import typer
from phabfive.constants import REPO_STATUS_CHOICES
from phabfive.exceptions import PhabfiveConfigException
diffusion_app = typer.Typer(help="The diffusion app")
repo_app = typer.Typer(help="Reposit... | dynamist/phabfive | phabfive/cli/diffusion.py | .py | 76cc0433e7199140 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Passphrase commands for phabfive CLI."""
import sys
from typing import List, Optional
import typer
from phabfive.exceptions import (
PhabfiveConfigException,
PhabfiveDataException,
PhabfiveRemoteException,
)
passphrase_app = typer.Typer(help="The passphrase app")
def _get_pa... | dynamist/phabfive | phabfive/cli/passphrase.py | .py | cb4a91b03d92edd6 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""User commands for phabfive CLI."""
import sys
import typer
from phabfive.core import Phabfive
from phabfive.exceptions import PhabfiveConfigException
user_app = typer.Typer(help="Information on users, setup wizard")
def _get_output_format(ctx: typer.Context) -> str:
"""Get the outpu... | dynamist/phabfive | phabfive/cli/user.py | .py | af904b25b6acf6d5 | 7.42 | 6 |
# -*- coding: utf-8 -*-
from enum import Enum
class OutputFormat(str, Enum):
"""Output format options for CLI commands."""
rich = "rich" # Human-readable with Rich formatting
tree = "tree" # Tree view with Rich Tree
yaml = "yaml" # Machine-readable YAML
json = "json" # Machine-readable JSON
... | dynamist/phabfive | phabfive/constants.py | .py | 4a183e30720761a6 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Main Diffusion class that orchestrates all submodules."""
import logging
from phabricator import APIError
from phabfive import passphrase
from phabfive.constants import IO_NEW_URI_CHOICES, DISPLAY_CHOICES
from phabfive.core import Phabfive
from phabfive.diffusion.fetchers import fetch_bra... | dynamist/phabfive | phabfive/diffusion/core.py | .py | c2fda57f3c81e4de | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""API data fetching functions for Diffusion module."""
from phabricator import APIError
from phabfive.diffusion.resolvers import resolve_shortname_to_id
from phabfive.exceptions import PhabfiveDataException
def fetch_repositories(phab, query_key=None, attachments=None, constraints=None):
... | dynamist/phabfive | phabfive/diffusion/fetchers.py | .py | 6e79409da9eae1d1 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""PHID and identifier resolution functions for Diffusion module."""
from phabfive.exceptions import PhabfiveDataException
def resolve_shortname_to_id(phab, shortname):
"""
Resolve repository shortname to its numeric ID.
Parameters
----------
phab : Phabricator
P... | dynamist/phabfive | phabfive/diffusion/resolvers.py | .py | a0866c411d432a1a | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Input validation functions for Diffusion module."""
import re
from phabfive.constants import MONOGRAMS
from phabfive.exceptions import PhabfiveDataException
def validate_repo_identifier(repo_id):
"""
Validate repository identifier format (e.g., R123).
Parameters
--------... | dynamist/phabfive | phabfive/diffusion/validators.py | .py | 70aa4c001bc6e888 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Formatters for edit operations."""
def display_changes(task_monogram, result):
"""Display the changes made to a task.
Args:
task_monogram (str): Task monogram (e.g., "T123")
result (dict): Result from edit_task_by_id with 'changes' list
"""
if not result:
... | dynamist/phabfive | phabfive/edit/formatters.py | .py | 22620119005725ef | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Validators for edit operations."""
def get_task_boards(task_data):
"""Extract board PHIDs from task data.
Args:
task_data (dict): Task data from maniphest.search with attachments
Returns:
list: List of board PHIDs the task is on
"""
try:
boards ... | dynamist/phabfive | phabfive/edit/validators.py | .py | c5f3b5d0db8a243f | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""External editor support for phabfive."""
import difflib
import os
import subprocess
import sys
import tempfile
def get_editor():
"""Get the user's preferred editor."""
return os.environ.get("EDITOR") or os.environ.get("VISUAL") or "vi"
def edit_text(initial_text="", prefix="", su... | dynamist/phabfive | phabfive/editor.py | .py | 440f6489a227a13f | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Task filtering functions for Maniphest operations."""
import logging
from phabfive.maniphest.fetchers import (
fetch_all_transactions,
fetch_priority_transactions,
fetch_task_transactions,
get_column_info,
get_current_column,
)
log = logging.getLogger(__name__)
def t... | dynamist/phabfive | phabfive/maniphest/filters.py | .py | 1dec5a3418761911 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""PHID resolution functions for Maniphest operations."""
import difflib
import fnmatch
import logging
from phabfive.exceptions import (
PhabfiveConfigException,
PhabfiveRemoteException,
)
log = logging.getLogger(__name__)
def parse_plus_separated(values):
"""
Parse plus-se... | dynamist/phabfive | phabfive/maniphest/resolvers.py | .py | e16109ca92fb99ff | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Utility functions for Maniphest operations."""
import datetime
import json
import logging
import re
import time
from collections.abc import Mapping
from typing import Optional
from jinja2 import Environment, Template, meta
from phabfive.exceptions import PhabfiveDataException
log = loggi... | dynamist/phabfive | phabfive/maniphest/utils.py | .py | 8905d5267c1c308d | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Validation functions for Maniphest operations."""
import logging
from phabfive.exceptions import PhabfiveConfigException
log = logging.getLogger(__name__)
def validate_priority(priority):
"""
Validate and normalize priority value.
Parameters
----------
priority : st... | dynamist/phabfive | phabfive/maniphest/validators.py | .py | 4d42bf4c94730201 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Core Passphrase class for credential management."""
import json
import logging
import re
from phabricator import APIError
from phabfive.constants import MONOGRAMS
from phabfive.core import Phabfive
from phabfive.exceptions import PhabfiveDataException, PhabfiveRemoteException
log = loggin... | dynamist/phabfive | phabfive/passphrase/core.py | .py | 9cb8c0a785495225 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Core paste functionality for phabfive."""
# python std lib
import re
# phabfive imports
from phabfive.constants import MONOGRAMS
from phabfive.core import Phabfive
from phabfive.exceptions import PhabfiveDataException
# 3rd party imports
from phabricator import APIError
class Paste(Phabf... | dynamist/phabfive | phabfive/paste/core.py | .py | 9afeabfadc125b4c | 7.42 | 6 |
# -*- coding: utf-8 -*-
# python std lib
import fnmatch
import logging
# phabfive imports
from phabfive.exceptions import PhabfiveException
log = logging.getLogger(__name__)
class ProjectPattern:
"""
Represents a single project pattern with AND conditions.
A pattern can have multiple conditions that m... | dynamist/phabfive | phabfive/project_filters.py | .py | 81fb27e5e7b76690 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""Interactive first-run configuration setup for phabfive."""
import json
import logging
import os
import re
import sys
from phabricator import Phabricator, APIError
from rich.console import Console
from rich.prompt import Prompt, Confirm
from phabfive.constants import VALIDATORS
log = logg... | dynamist/phabfive | phabfive/setup.py | .py | 9d35448a742e93ed | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""
Priority transition pattern matching for task priorities.
This module provides pattern matching for task priority changes,
supporting conditions like 'from:High', 'to:Normal', 'in:Low', 'raised', 'lowered'.
"""
import logging
from phabfive.transitions.base import (
parse_condition_pa... | dynamist/phabfive | phabfive/transitions/priority.py | .py | 5d2e635b77452e97 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""
Status transition pattern matching for task statuses.
This module provides pattern matching for task status changes,
supporting conditions like 'from:Open', 'to:Resolved', 'in:Blocked', 'raised', 'lowered'.
"""
import logging
from phabfive.transitions.base import (
parse_condition_pa... | dynamist/phabfive | phabfive/transitions/status.py | .py | 8f733f6def22a63f | 7.42 | 6 |
# -*- coding: utf-8 -*-
# python std lib
import json
import logging
import os
import stat
from urllib.parse import urlparse
# 3rd party imports
from phabricator import APIError, Phabricator
# phabfive imports
from phabfive.core import Phabfive
from phabfive.exceptions import PhabfiveConfigException, PhabfiveRemoteEx... | dynamist/phabfive | phabfive/user.py | .py | 474660c88fa1c8a2 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""YAML utilities for phabfive."""
import sys
from collections import defaultdict
from ruamel.yaml import YAML
def parse_yaml_from_stdin(parse_monogram_func):
"""Parse YAML documents from stdin.
Args:
parse_monogram_func: Function to parse monograms (e.g., Phabfive.parse_mon... | dynamist/phabfive | phabfive/yaml_utils.py | .py | 2ff0c94a936ce1c0 | 7.42 | 6 |
'''
Module : Main
Description : The main entry point for the program.
Copyright : (c) Bernie Pope, 16 Oct 2019
License : MIT
Maintainer : bjpope@unimelb.edu.au
Portability : POSIX
Outlier detection for varlap
'''
from argparse import ArgumentParser
import sys
import logging
import pkg_resources
import ... | bjpop/varlap | varlap/varlap_outliers.py | .py | 3322881a11c46b2a | 7.45 | 7 |
# -*- coding: utf-8 -*-
import json
import os
from elasticsearch import NotFoundError, Elasticsearch
import elasticsearch_dsl
from pybana.elastic.elastic_client import ElasticsearchExtClient
from .models import Config, Dashboard, DataView, IndexPattern, Visualization, Search
__all__ = ("Kibana",)
DEFAULT_CONFIG =... | optimdata/pybana | pybana/client.py | .py | 2c9b9ae13b9965b5 | 7.42 | 6 |
# -*- coding: utf-8 -*-
import json
import os
import subprocess
import vl_convert as vlc
from typing import Any, Dict, Optional, Union
from sentry_sdk import capture_exception
__all__ = ("InvalidVegaSpecException", "VegaRenderer")
class InvalidVegaSpecException(Exception):
def __init__(self, message, vega_cli_... | optimdata/pybana | pybana/helpers/vega.py | .py | 7361d014262cf439 | 7.42 | 6 |
# -*- coding: utf-8 -*-
"""
Resolve Kibana 8+ saved-object references to index-pattern / data-view documents.
Legacy visualizations embed the data source id in ``searchSourceJSON.index``.
Kibana 7.8+ often uses ``indexRefName`` plus a root-level ``references`` array instead.
"""
import json
from elasticsearch_dsl.ut... | optimdata/pybana | pybana/kibana_refs.py | .py | 59dc2c3f26401d0f | 7.42 | 6 |
# -*- coding: utf-8 -*-
import json
from elasticsearch import NotFoundError
from elasticsearch_dsl import Document, Keyword, Search as EsSearch
from pybana.kibana_refs import (
first_input_control_index_pattern_ref,
resolve_index_pattern_document_id,
)
__all__ = (
"BaseDocument",
"Config",
"Data... | optimdata/pybana | pybana/models.py | .py | 0871fec171f9fc82 | 7.42 | 6 |
# -*- coding: utf-8 -*-
from datetime import timedelta
import json
from .metrics import MetricTranslator
from .utils import get_field_arg
"""
Provide translators which translate bucket aggregations defined using kibana syntax to elasticsearch syntax.
Not supported:
- IPv4 range. Never used.
- Significant terms. Rar... | optimdata/pybana | pybana/translators/elastic/buckets.py | .py | 6c3646501b55e2be | 7.42 | 6 |
# -*- coding: utf-8 -*-
__all__ = ("Scope",)
class Scope:
"""
Scope associated to the visualization.
:param beg datetime: Begin date of the period on which data should be fetched.
:param end datetime: End date of the period on which data should be fetched.
:param tzinfo (str, pytz.Timezone): Tim... | optimdata/pybana | pybana/translators/scope.py | .py | 990c573781bac9a2 | 7.42 | 6 |
# -*- coding: utf-8 -*-
import json
__all__ = ("ContextVisualization",)
class ContextVisualization:
"""
Represent a visualization with a context.
:param Visualization visualization: Visualization deserialized.
:param pybana.Config config: Config of the kibana instance.
"""
def __init__(sel... | optimdata/pybana | pybana/translators/vega/visualization.py | .py | 0127a1c2399c29dc | 7.42 | 6 |
from fractions import Fraction
from math import acos, sqrt, degrees
from typing import Union, List, TYPE_CHECKING, Iterator, Dict
import numpy as np
if TYPE_CHECKING:
from shelxfile import Shelxfile
from shelxfile.atoms.atom import Atom
from shelxfile.atoms.pairs import Bond, SymBond
from shelxfile.misc.dsrmath i... | dkratzert/ShelXFile | shelxfile/atoms/atoms.py | .py | 3d51bc74091258aa | 7.6 | 15 |
class AtomPair():
def __init__(self, atom1, atom2):
self.atom1 = atom1
self.atom2 = atom2
def __repr__(self):
if self.atom1 and self.atom2:
return f'{self.atom1} {self.atom2}'
else:
return ''
def __len__(self):
if self.atom1 and self.atom2:
... | dkratzert/ShelXFile | shelxfile/atoms/pairs.py | .py | c7e30db49f6cdadc | 7.6 | 15 |
import unittest
from unittest import TestCase
from shelxfile.misc.misc import frac_to_cart
from shelxfile.shelx.shelx import Shelxfile
class TestAtoms(TestCase):
def setUp(self) -> None:
self.shx = Shelxfile()
self.shx.read_file('tests/resources/p21c.res')
def test_u_eq_of_hydrogen_atom_in_... | dkratzert/ShelXFile | tests/test_atoms.py | .py | 6d01ca53bc7791c0 | 8.1 | 15 |
from niveristand import nivs_rt_sequence, NivsParam, realtimesequencetools
from niveristand.clientapi import (
BooleanValue,
ChannelReference,
DoubleValue,
DoubleValueArray,
ErrorAction,
I32Value,
I64Value,
)
from niveristand.errors import RunError
from niveristand.library import (
array... | ni/niveristand-python | examples/basic_rt_sequence_examples.py | .py | 7dd76a753785b063 | 7.66 | 20 |
from niveristand import nivs_rt_sequence, NivsParam, run_py_as_rtseq
from niveristand.clientapi import BooleanValue, ChannelReference, DoubleValue
from niveristand.library import multitask, nivs_yield, stop_task, task, wait_until_settled
""" This module adds multitasking, return values, and cleanup tasks to engine_dem... | ni/niveristand-python | examples/engine_demo/engine_demo_advanced.py | .py | 7705b6bc1f9e365b | 7.66 | 20 |
from niveristand import nivs_rt_sequence, NivsParam, realtimesequencetools
from niveristand.clientapi import BooleanValue, ChannelReference, DoubleValue
from niveristand.library import wait
""" This module contains a basic example of how to create an RT sequence in Python.
This example mirrors the 'Engine Demo Basic'... | ni/niveristand-python | examples/engine_demo/engine_demo_basic.py | .py | 6b6772ba3fe83023 | 7.66 | 20 |
from niveristand import nivs_rt_sequence, NivsParam, run_py_as_rtseq
from niveristand.clientapi import BooleanValue, ChannelReference, DoubleValue, DoubleValueArray
from niveristand.library import localhost_wait, seqtime, wait_until_settled
""" This module contains a complex example for running multiple tests in sequ... | ni/niveristand-python | examples/engine_demo/test_engine_set_points.py | .py | 922a19b5e61afc7f | 8.16 | 20 |
"""Create an empty system definition."""
from __future__ import annotations
import os
import sys
sys.path.append(r"C:\Program Files\National Instruments\VeriStand 2024")
from niveristand import VeriStandSdfError # noqa: E402
from niveristand.systemdefinitionapi import ( # noqa: E402
AcquisitionMode,
AlarmMo... | ni/niveristand-python | examples/sysdef_example.py | .py | b6c96c2cc15cf797 | 7.66 | 20 |
from functools import wraps
import inspect
from niveristand import _errormessages, errors
from niveristand.clientapi._datatypes import DataType
from niveristand.clientapi._datatypes import rtprimitives
rt_seq_mode_id = "__rtseq_mode__"
def nivs_rt_sequence(func):
from niveristand.library._tasks import get_schedu... | ni/niveristand-python | src/niveristand/_decorators.py | .py | 8b19b657bfa3c79b | 7.66 | 20 |
"""
Generic helper functions
"""
import logging
from contextlib import contextmanager
# @see https://docs.python.org/3/library/tempfile.html#tempfile.TemporaryDirectory
from tempfile import TemporaryDirectory
from typing import Iterator, ContextManager
from xml_sitemap_writer import XMLSitemap
logging.basicConfig(l... | pigs-will-fly/py-xml-sitemap-writer | test/__init__.py | .py | 573cb6adef37f46f | 8 | 9 |
"""
Tests a sitemap's add_url method
Mocks away all I/O related functions, lets the test assert the XML tag content
"""
from typing import Optional
from xml_sitemap_writer import XMLSitemap
from . import DEFAULT_HOST
class MockedXMLSitemap(XMLSitemap):
"""
Mocked version of the XMLSitemap class that does n... | pigs-will-fly/py-xml-sitemap-writer | test/test_add_url.py | .py | d463bef13637990b | 7 | 9 |
"""
Tests a basic sitemap's API
"""
from . import urls_iterator, test_sitemap
def test_simple_single_sitemap():
"""
Tests a single sitemap
"""
with test_sitemap() as sitemap:
sitemap.add_section("articles")
for url in urls_iterator():
sitemap.add_url(url)
print(s... | pigs-will-fly/py-xml-sitemap-writer | test/test_basic.py | .py | ed7de15429132180 | 7 | 9 |
"""
Tests big sitemaps
"""
from . import urls_iterator, test_sitemap
def test_a_big_sitemap():
"""
Tests a big sitemap
"""
with test_sitemap() as sitemap:
sitemap.add_urls(urls_iterator(count=100000, prefix="article"))
print(sitemap)
assert len(sitemap) == 100000
ass... | pigs-will-fly/py-xml-sitemap-writer | test/test_big_sitemaps.py | .py | af36f546c085ee2b | 7 | 9 |
"""
Tests a sitemap's XML output
"""
import gzip
from tempfile import TemporaryDirectory
from xml_sitemap_writer import XMLSitemap
from . import urls_iterator, DEFAULT_HOST
def test_simple_single_sitemap_output():
"""
Tests a single sitemap XML output
"""
with TemporaryDirectory(prefix="sitemap_test... | pigs-will-fly/py-xml-sitemap-writer | test/test_check_xml.py | .py | 43351f0ab53d6663 | 7 | 9 |
"""
Tests sitemap's custom sections
"""
from . import urls_iterator, test_sitemap
def test_custom_sitemap_section():
"""
Test how empty sections are handled
"""
with test_sitemap() as sitemap:
sitemap.add_section(section_name="articles")
sitemap.add_urls(urls_iterator(prefix="article"... | pigs-will-fly/py-xml-sitemap-writer | test/test_sections.py | .py | 451d599ef9abc5b0 | 7 | 9 |
"""
Provides XMLSitemap class used to generate large XML sitemap from iterators
"""
import gzip # https://docs.python.org/3/library/gzip.html
import logging
import re
from datetime import datetime
from typing import List, Iterator, IO, Optional
from xml.sax.saxutils import escape as escape_xml
POWERED_BY_URL = "ht... | pigs-will-fly/py-xml-sitemap-writer | xml_sitemap_writer.py | .py | 2a32232b3cf69f7c | 7.5 | 9 |
# Copyright 2020-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/airflow/airflow.py | .py | 9c0c7d61d141ffe0 | 7.66 | 20 |
# Copyright 2020, 2021 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in... | The-Academic-Observatory/observatory-platform | observatory_platform/airflow/sensors.py | .py | 40ebdd7961b10dac | 7.66 | 20 |
# Copyright 2020-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/airflow/tasks.py | .py | 040d8fcba3f53a5d | 7.66 | 20 |
# Copyright 2021 Curtin University. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | The-Academic-Observatory/observatory-platform | observatory_platform/airflow/tests/test_airflow.py | .py | d5da697b16fd7c01 | 8.16 | 20 |
# Copyright 2019-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/airflow/tests/test_release.py | .py | 11cf9f25a34d6ab9 | 8.16 | 20 |
# Copyright 2019-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/airflow/tests/test_workflow.py | .py | 2b6fb0055641aca2 | 8.16 | 20 |
# Copyright 2019-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/airflow/workflow.py | .py | 3097e00dde888a5f | 7.66 | 20 |
# Copyright 2019, 2020 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in... | The-Academic-Observatory/observatory-platform | observatory_platform/config.py | .py | 5919e2e811624c22 | 7.66 | 20 |
# Copyright 2020-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/dataset_api.py | .py | 143cc0b5d19732b3 | 7.66 | 20 |
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writ... | The-Academic-Observatory/observatory-platform | observatory_platform/google/gcp.py | .py | 0ae60ef023de731b | 7.66 | 20 |
# Copyright 2023-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/google/gke.py | .py | f0351620c57ad14f | 7.66 | 20 |
# Copyright 2025 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writi... | The-Academic-Observatory/observatory-platform | observatory_platform/google/gmail.py | .py | d50e327de61de01d | 7.66 | 20 |
# Copyright 2020 Curtin University. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | The-Academic-Observatory/observatory-platform | observatory_platform/google/tests/test_gcs.py | .py | 4ab8849aca03e1b8 | 7.16 | 20 |
# Copyright 2025 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writi... | The-Academic-Observatory/observatory-platform | observatory_platform/google/tests/test_gmail.py | .py | ef177fa9687fd1de | 7.16 | 20 |
# Copyright 2019 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writi... | The-Academic-Observatory/observatory-platform | observatory_platform/http_download.py | .py | acb0529e5899b51a | 7.66 | 20 |
# Copyright 2020 Artificial Dimensions Ltd
# Copyright 2020 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | The-Academic-Observatory/observatory-platform | observatory_platform/jinja2_utils.py | .py | 1b1e10994164bc15 | 7.66 | 20 |
# Copyright 2021-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/sandbox/ftp_server.py | .py | 2dde536442d701ac | 7.66 | 20 |
# Copyright 2021-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/sandbox/http_server.py | .py | 948779d8b48a6749 | 7.66 | 20 |
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/l... | The-Academic-Observatory/observatory-platform | observatory_platform/sandbox/sandbox_environment.py | .py | fd25aa59de5a9c7e | 7.66 | 20 |
# Copyright (c) 2011-2017 Ruslan Spivak
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, ... | The-Academic-Observatory/observatory-platform | observatory_platform/sandbox/sftp_server.py | .py | e93f720ed5d64477 | 7.66 | 20 |
# Copyright 2021-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/sandbox/tests/test_ftp_server.py | .py | 23a79638ed97e2e4 | 8.16 | 20 |
# Copyright 2019-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/sandbox/tests/test_http_server.py | .py | 8ca2dc50b6f5bb90 | 8.16 | 20 |
# Copyright 2021-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/sandbox/tests/test_sandbox_environment.py | .py | 53164ff56abac041 | 8.16 | 20 |
# Copyright 2019-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/sandbox/tests/test_sftp_server.py | .py | 5a3de6f68dc37742 | 8.16 | 20 |
# Copyright 2019-2024 Curtin University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | The-Academic-Observatory/observatory-platform | observatory_platform/sandbox/tests/test_test_utils.py | .py | eb9dace507f983cb | 8.16 | 20 |
import typing
if typing.TYPE_CHECKING:
# sigh. apparently reveal_type is making mypy fail
# reveal_type(__file__)
pass
def test_module_name() -> None:
assert __package__ == 'karlicoss_pymplate'
# just in case because pytest might have some shenanigans with test module names depending on args..
... | karlicoss/pymplate | src/karlicoss_pymplate/module.py | .py | d43bcb5182a6431e | 7.48 | 8 |
# SPDX-FileCopyrightText: Copyright The Linux Foundation
# SPDX-FileType: SOURCE
# SPDX-License-Identifier: Apache-2.0
import os
import copy
from pathlib import Path
from datatypes import Status, ProjectRepoType
from datefuncs import parseYM, priorMonth, getYMStr
def getUploadFolder(fossologyServer, uploadFolderName... | lfscanning/scaffold | runagents.py | .py | 947fa21b013df51b | 7.42 | 6 |
# SPDX-FileCopyrightText: Copyright The Linux Foundation
# SPDX-FileType: SOURCE
# SPDX-License-Identifier: Apache-2.0
'''
Created on Nov 2, 2021
@author: Gary O'Neall
Utility class to support common function in Scaffold
'''
import shutil
import time
import os
import stat
def _rmtree_error_handler(fun, path, excin... | lfscanning/scaffold | util.py | .py | bc9fab0fd62f448c | 7.42 | 6 |
from http.cookies import SimpleCookie
class CookieSet(SimpleCookie):
"""
CookieSet class just extends the :class:`http.cookies.SimpleCookie` class
to create a list of HTTP headers, because the
class:`http.cookies.SimpleCookie` class just outputs a
concatenated strings.
.. versionadded:: 7.16
... | yhttp/yhttp | yhttp/core/cookieset.py | .py | 831502427f1d316a | 7.57 | 13 |
#!pyvenv/bin/python
from setuptools import find_packages, setup
import os
import distutils.cmd
class CleanCommand(distutils.cmd.Command):
"""
Our custom command to clean out junk files.
"""
description = "Cleans out junk files we don't want in the repo"
user_options = []
def initialize_option... | vche/pycliarr | setup.py | .py | 789cc40c732e1cf1 | 7.64 | 18 |
import json
import logging
import platform
from pathlib import Path
from pprint import pformat
from typing import Any, Dict, List, Optional, Type, TypeVar, Union
import requests # type: ignore
from pycliarr.api.exceptions import CliArrError, CliDecodeError, CliServerError
log = logging.getLogger(__name__)
json_dict... | vche/pycliarr | src/pycliarr/api/base_api.py | .py | fc559043cd484160 | 7.64 | 18 |
from pathlib import Path
from typing import Any, Dict, List, Optional, Union, cast
from pycliarr.api.base_api import BaseCliApiItem, json_data, json_list
from pycliarr.api.base_media import BaseCliMediaApi
from pycliarr.api.exceptions import RadarrCliError
class RadarrMovieItem(BaseCliApiItem):
"""Class for hand... | vche/pycliarr | src/pycliarr/api/radarr.py | .py | 18e159c6e30a5520 | 7.64 | 18 |
from pathlib import Path
from typing import Any, Dict, List, Optional, Union, cast
from pycliarr.api.base_api import BaseCliApiItem, json_data
from pycliarr.api.base_media import BaseCliMediaApi
from pycliarr.api.exceptions import SonarrCliError
class SonarrSerieItem(BaseCliApiItem):
"""Class for handling serie ... | vche/pycliarr | src/pycliarr/api/sonarr.py | .py | 70caca8ab6021396 | 7.64 | 18 |
import logging
import sys
import traceback
from argparse import ArgumentParser, Namespace
from typing import Dict, List
import pycliarr
from pycliarr.api import exceptions
from pycliarr.cli import utils
from pycliarr.cli.cli_cmd import CLI_LIST, ArgDefaults, CliApiCommand
log = logging.getLogger(__name__)
def _pars... | vche/pycliarr | src/pycliarr/cli/cli.py | .py | 0106919dff65d299 | 7.64 | 18 |
import logging
from typing import Optional
def setup_logging(level: int = logging.INFO, filename: Optional[str] = None) -> None:
"""Configure standard logging."""
logging.basicConfig(
format="%(asctime)s %(filename)s:%(lineno)s %(levelname)s: %(message)s", level=level, filename=filename
)
def si... | vche/pycliarr | src/pycliarr/cli/utils.py | .py | 8be0b3d9bb3bb874 | 7.64 | 18 |
#!/usr/bin/env python3
"""
Plot all subdirectories one level below the specified directory.
This is useful if making a change in PyGemini or Gemini3D, to plot many simulations
to visually check for something unexpected.
"""
from pathlib import Path
import argparse
import concurrent.futures
import itertools
import os
... | gemini3d/pygemini | scripts/plot_all_subdir.py | .py | c2e5acc71ebff928 | 7.59 | 14 |
from pathlib import Path
import subprocess
import shutil
import sys
def cmake_exe() -> str:
cmake = shutil.which("cmake")
if not cmake:
# try to help if Homebrew or Ports is not on PATH
if sys.platform == "darwin":
paths = ["/opt/homebrew/bin", "/usr/local/bin", "/opt/local/bin"]
... | gemini3d/pygemini | src/gemini3d/archive.py | .py | 37292a457251dc1c | 7.59 | 14 |
import json
import importlib.resources as ir
import xarray
def err_pct(a, b) -> float:
"""compute maximum error percent
Parameters
----------
a: numpy.ndarray
new data
b: numpy.ndarray
reference data
Returns
-------
float
maximum error percent
Compare r... | gemini3d/pygemini | src/gemini3d/compare/utils.py | .py | b4c21008e4eaec4d | 7.59 | 14 |
import math
import numpy as np
pi = math.pi
tau = math.tau
def geomag2geog(thetat, phit) -> tuple:
"""geomagnetic to geographic"""
# FIXME: this is for year 1985, see Schmidt spherical harmonic in MatGemini
thetan = math.radians(11)
phin = math.radians(289)
# enforce phit = [0,2pi]
phit = ... | gemini3d/pygemini | src/gemini3d/coord.py | .py | 4970b8081eb646c7 | 7.59 | 14 |
"""
generate, read, write Electric Field
"""
import typing as T
import logging
from datetime import datetime
import xarray
import numpy as np
from .. import write
from ..config import datetime_range
from ..utils import str2func
def get_times(cfg: dict[str, T.Any]) -> list[datetime]:
"""
vector of times to ... | gemini3d/pygemini | src/gemini3d/efield/__init__.py | .py | 41e96e8846046526 | 7.59 | 14 |
"""
functions for finding files
"""
from datetime import datetime, timedelta
from pathlib import Path
import shutil
import os
import subprocess
import logging
import numpy
from .utils import filename2datetime
EXE_PATHS = [".", "bin"]
def config(path: Path) -> Path:
"""given a path or config filename, return ... | gemini3d/pygemini | src/gemini3d/find.py | .py | b675d771690fcf15 | 7.59 | 14 |
"""
these are approximately duplicates of coord.py.
Need to compare vs. gemini3d/coord.py and merge/remove.
---
transformations from dipole to spherical
"""
import math
import numpy as np
from numpy import sin, cos
# define module-scope constants
Re = 6370e3
thetan = math.radians(11)
phin = math.radians(289)
pi = ... | gemini3d/pygemini | src/gemini3d/grid/convert.py | .py | c36956c3bf3ed18d | 7.59 | 14 |
"""
Module containing root finding functions based on Newtons' method.
These adaptations meant for dipole to spherical coordinate transformation
"""
from .convert import calc_theta, Re
from .convert import objfunr as f, objfunr_derivative as fprime
def qp2rtheta(q: float, p: float, verbose: bool = False) -> tuple[fl... | gemini3d/pygemini | src/gemini3d/grid/newton_method.py | .py | 7cce7a237f45eb35 | 7.59 | 14 |
import math
import numpy as np
def grid1d(dist: float, L: int, parms: list[float] | None = None):
"""
generate 1D grid
Parameters
----------
dist: float
one-way distance from origin (meters)
L: int
number of cells
Returns
-------
x: np.ndarray
1D vector... | gemini3d/pygemini | src/gemini3d/grid/uniform.py | .py | f24df1485e454cee | 7.59 | 14 |
import os
import subprocess
import binascii
from pathlib import Path
import shutil
import importlib.resources as ir
def hpc_submit_job(batcher: str, job_file: Path):
"""
submits batch job
"""
if batcher == "qsub":
subprocess.run(["qsub", str(job_file)])
else:
raise LookupError(
... | gemini3d/pygemini | src/gemini3d/hpc.py | .py | ed87d3bd192ab8c1 | 7.59 | 14 |
"""
functions related to running Gemini3D.
Either locally (laptop or interactive HPC) or creating an HPC batch script based on template.
"""
import typing
import os
import logging
import subprocess
import shutil
from math import prod
from pathlib import Path
import numpy
from . import find
from . import model
from . ... | gemini3d/pygemini | src/gemini3d/job.py | .py | 1d3a03b498d2c9b5 | 7.59 | 14 |
"""
get Linux system info
"""
from configparser import ConfigParser
from pathlib import Path
import sys
def os_release() -> list[str]:
"""
reads /etc/os-release with fallback to legacy methods
Returns
-------
linux_names: list of str
name(s) of operating system detect
"""
if sy... | gemini3d/pygemini | src/gemini3d/linux_info.py | .py | 5d30508183c5b746 | 7.59 | 14 |
from unified_range import api
def test_semver_full_way():
"""
1. Test conversion from semver -> unified -> semver.
2. Validate the results against manually validated expected file.
"""
results = []
with open("tests/test_data/semver-ranges.txt", "r") as semver_rngs:
semver_ranges = sem... | snyk/unified-range | tests/test_api.py | .py | 42289602f022bf14 | 7.06 | 12 |
from unified_range import utils
test_npm_semver_ranges = [
"*", "1.2.3", "2.0.0 || 2.1.0", "<0.1.2", "<=0.12.7",
"<5.6.5 || >=6 <6.0.1",
"<2.0.20180219", "<1.3.0-rc.4", "<0.0.0", "<0.10.0 >=0.9.0",
"<2.11.2 || >=3.0.0 <3.6.4 || >=4.0.0 <4.5.7 || >=5.0.0 <5.2.1",
]
expected_version_range = [
'(,)'... | snyk/unified-range | tests/test_utils.py | .py | 216e7f9815d77686 | 7.06 | 12 |
from typing import List
from unified_range import utils
from unified_range.models import UnifiedVersionRange
from unified_range.utils import is_semver_range, is_unified_range
def from_semver(semver_spec: str) -> str:
"""
Convert semver string to unified range string.
:param semver_spec: str
:return:... | snyk/unified-range | unified_range/api.py | .py | d9aec014e9ab7df2 | 7.56 | 12 |
"""
Task model
"""
from django.db import models
from django.urls import reverse
class Task(models.Model):
"""
Stores a single Task entry
"""
task_title = models.CharField(max_length=50, verbose_name='Task Title')
task_description = models.TextField(max_length=200, verbose_name='Task Descriptio... | gabicavalcante/django-test-ci | tasks/models.py | .py | a9667a9013f61e0f | 7.45 | 7 |
from lightdp.lexer import build_lexer
from lightdp.parser import build_parser
import jsonpickle
def test_forall_keyword():
docstring = \
"""
precondition : forall i (^q[i] >= -1 and ^q[i] <= 1);
A : num(0)
"""
lexer = build_lexer()
parser = build_parser()
forall_var, pr... | yuxincs/lightdp | tests/test_parser.py | .py | bd06876ef1fd3f4e | 7 | 9 |
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