text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
values | hash stringlengths 16 16 | score float64 7 8.5 | stars int64 0 237k |
|---|---|---|---|---|---|---|
"""Re-export 3D grids with properties."""
from pathlib import Path
import xtgeo
from fmu.config import utilities as ut
from fmu.dataio import ExportData
CFG = ut.yaml_load("../../fmuconfig/output/global_variables.yml")
OUT_DIR = Path("../output/grids")
GRID_FILE = "gg"
GRID_NAME = "geogrid"
PROPS_TO_EXPORT = ["phi... | equinor/fmu-dataio | examples/example_exports/export_non_rms_data/export_grid3d.py | .py | eb282b82ebdffaf6 | 7.52 | 10 |
"""Re-export already exported volume tables for Sumo."""
from pathlib import Path
import pandas as pd
from fmu.config import utilities as ut
from fmu.dataio import ExportData
CFG = ut.yaml_load("../../fmuconfig/output/global_variables.yml")
VOL_DIR = Path("../output/volumes/")
VOL_FILES = ["geogrid_vol.csv", "simg... | equinor/fmu-dataio | examples/example_exports/export_non_rms_data/export_volumetables.py | .py | f1a9f7e8e815ba1b | 7.52 | 10 |
"""Export fault lines polygons.
This example contains two cases of exporting: directly from the RMS project or from
already exported files. These two cases are indicated with comments where appropriate.
"""
from pathlib import Path
import xtgeo
from fmu.config import utilities as ut
from fmu.dataio import ExportDat... | equinor/fmu-dataio | examples/example_exports/export_rms_data/export_faultpolygons.py | .py | cc0b6e24f4d65853 | 7.52 | 10 |
"""Export FaultRoom surfaces from RMS."""
from pathlib import Path
from fmu.config import utilities as ut
from fmu.dataio import ExportData
from fmu.dataio._readers import faultroom
CFG = ut.yaml_load("../../fmuconfig/output/global_variables.yml")
# If running outside RMS using files that are stored e.g. on rms/ou... | equinor/fmu-dataio | examples/example_exports/export_rms_data/export_faultroom_surfaces.py | .py | cb82605822fc1790 | 7.52 | 10 |
"""Export a preprocessed surface with metadata."""
from pathlib import Path
import xtgeo
from fmu.config import utilities as ut
from fmu.dataio.dataio import ExportData
CFG = ut.yaml_load("../../fmuconfig/output/global_variables.yml")
DEPTH_FILE = Path("../output/maps/structure/") / "topvolantis--ds_extract_geogri... | equinor/fmu-dataio | examples/example_exports/export_rms_data/export_preprocessed_surface.py | .py | c6a18b851f6a347b | 7.52 | 10 |
"""Export maps that holds certain average gridmodel properties.
The files on disk are:
facies_fraction_channels_volon.gri
klogh_average_valysar.gri
phit_average_therys.gri
We want to use the file names here to extract some data (like name of formation, e.g.
Therys).
"""
from pathlib import Path
import xtgeo
from f... | equinor/fmu-dataio | examples/example_exports/export_rms_data/export_propmaps.py | .py | 9fcf906d93784fd9 | 7.52 | 10 |
"""Re-export already exported surfaces with metadata."""
from pathlib import Path
import xtgeo
from fmu.config import utilities as ut
from fmu.dataio import ExportData
CFG = ut.yaml_load("../../fmuconfig/output/global_variables.yml")
PORO_FILE = Path("../output/maps/props/poro_average.gri")
DEPTH_FILE = Path("../o... | equinor/fmu-dataio | examples/example_exports/export_rms_data/export_surface_maps.py | .py | 078deb454fb94414 | 7.52 | 10 |
"""Create case metadata using fmu-dataio."""
import logging
from fmu.config import utilities as utils
from fmu.dataio._workflows.case.export_case_metadata import ExportCaseMetadata
logger = logging.getLogger(__name__)
logger.setLevel(logging.WARNING)
CFG = utils.yaml_load("fmuconfig/output/global_variables.yml")
... | equinor/fmu-dataio | examples/metadata_scripts/create_case_metadata.py | .py | ec33b493ce51844d | 7.52 | 10 |
"""
Module for ExportConfig which contains the fully resolved export configuration.
This is the interface used internally which has already processed user input and
undergone input validation and transformations.
"""
from __future__ import annotations
import dataclasses
from dataclasses import dataclass
from pathlib... | equinor/fmu-dataio | src/fmu/dataio/_export/_export_config.py | .py | 4569dbd1f46c7792 | 7.52 | 10 |
"""This module contains classes used when data is being exported from the object data
provider.
Mostly these classes are here to maintain backward compatibility while a deprecation
period is ongoing.
"""
from __future__ import annotations
import warnings
from typing import Final, Literal
from pydantic import (
... | equinor/fmu-dataio | src/fmu/dataio/_export/_export_models.py | .py | 5e16c6292cab060a | 7.52 | 10 |
"""Functions for exporting data with and without metadata."""
from __future__ import annotations
from pathlib import Path
from typing import TYPE_CHECKING, Final
import yaml
from fmu.dataio._logging import null_logger
from fmu.dataio._metadata import (
SharePathConstructor,
_generate_metadata,
create_ob... | equinor/fmu-dataio | src/fmu/dataio/_export/core.py | .py | 7b0264dd69a766de | 7.52 | 10 |
"""Serialization of data objects to files and buffers.
This module handles the i/o exporting data objects. It dispatches to the appropriate
serialization logic based on the underlying object type while checksumming.
"""
from __future__ import annotations
import json
import logging
from io import BytesIO
from pathlib... | equinor/fmu-dataio | src/fmu/dataio/_export/serialize.py | .py | fd558c1f86bf6635 | 7.52 | 10 |
"""Module to produce a GlobalConfiguration object or dictionary."""
import contextlib
import warnings
from pathlib import Path
from typing import Any, Final
import pydantic
import yaml
from fmu.dataio._logging import null_logger
from fmu.dataio.exceptions import ValidationError
from fmu.datamodels.fmu_results.global... | equinor/fmu-dataio | src/fmu/dataio/_global_config.py | .py | e6e72b7bacc866a6 | 7.52 | 10 |
from __future__ import annotations
import os
from pathlib import Path
from typing import TYPE_CHECKING, Any, Final, Self, TypedDict
import pyarrow as pa
import pyarrow.parquet as pq
if TYPE_CHECKING:
from fmu.sumo.uploader._fileonjob import FileOnJob
# Client id for Sumo uploader to identify the source of uploa... | equinor/fmu-dataio | src/fmu/dataio/_interfaces/sumo_uploader_interface.py | .py | 7448a9b7eeede4ab | 7.52 | 10 |
"""Module for DataIO _FileData
Populate and verify stuff in the 'file' block in fmu (partial excpetion is checksum_md5
as this is convinient to populate later, on demand)
"""
from __future__ import annotations
import re
import warnings
from pathlib import Path
from typing import TYPE_CHECKING, Final
from fmu.dataio... | equinor/fmu-dataio | src/fmu/dataio/_metadata/_file.py | .py | a2ea89e54a68a612 | 7.52 | 10 |
from __future__ import annotations
from abc import abstractmethod
from datetime import datetime
from typing import TYPE_CHECKING, Final
from fmu.dataio._export import ExportConfig, UnsetData
from fmu.dataio._logging import null_logger
from fmu.datamodels.fmu_results.data import AnyData, SmdaEntity, Time, Timestamp
fr... | equinor/fmu-dataio | src/fmu/dataio/_metadata/_object/_base.py | .py | 91d3d9a18ed92fb7 | 7.52 | 10 |
from __future__ import annotations
from typing import TYPE_CHECKING, Final
from fmu.dataio._definitions import ExportFolder, FileExtension
from fmu.dataio._logging import null_logger
from fmu.dataio._metadata._object._utils import Utils
from fmu.datamodels.fmu_results.data import BoundingBox3D
from fmu.datamodels.fmu... | equinor/fmu-dataio | src/fmu/dataio/_metadata/_object/_faultroom.py | .py | de2b1cb7bac0b858 | 7.52 | 10 |
from __future__ import annotations
import warnings
from typing import TYPE_CHECKING, Final
from fmu.dataio._definitions import (
STANDARD_TABLE_INDEX_COLUMNS,
ExportFolder,
FileExtension,
)
from fmu.dataio._logging import null_logger
from fmu.dataio.exceptions import ConfigurationError
from fmu.datamodels... | equinor/fmu-dataio | src/fmu/dataio/_metadata/_object/_tables.py | .py | bd9658aedefcd050 | 7.52 | 10 |
from __future__ import annotations
import warnings
from typing import TYPE_CHECKING
import numpy as np
import pyarrow as pa
import pyarrow.compute as pc
from fmu.datamodels.fmu_results.specification import Statistics
if TYPE_CHECKING:
import pandas as pd
from fmu.datamodels.fmu_results.global_configuration... | equinor/fmu-dataio | src/fmu/dataio/_metadata/_object/_utils.py | .py | 47c21ecc138ce178 | 7.52 | 10 |
"""Module for creating ObjectData instances.
This contains evaluation of the valid objects that can be handled and is mostly used
in the ``data`` block but some settings are applied later in the other blocks
"""
from __future__ import annotations
from typing import TYPE_CHECKING, Final
import pandas as pd
import py... | equinor/fmu-dataio | src/fmu/dataio/_metadata/_object/core.py | .py | 5694036a69e39244 | 7.52 | 10 |
"""
This module contains models used to output the metadata that sit beside the exported
data.
It contains internal data structures that are designed to depend on external modules,
but not the other way around. This design ensures modularity and flexibility, allowing
external modules to be potentially separated into t... | equinor/fmu-dataio | src/fmu/dataio/_metadata/core.py | .py | e67d14cccda6657a | 7.52 | 10 |
"""Module for reading Faultroom data"""
from __future__ import annotations
import hashlib
import json
from dataclasses import dataclass, field
from pathlib import Path
def read_faultroom_file(filename: str | Path) -> FaultRoomSurface:
"""Faultroom surface data are (geo)JSON file or dicts; needs separate handlin... | equinor/fmu-dataio | src/fmu/dataio/_readers/faultroom.py | .py | 4e44350bb45bc01c | 7.52 | 10 |
from __future__ import annotations
import os
import warnings
from dataclasses import dataclass
from pathlib import Path
from typing import Final, Self
import yaml
from fmu.dataio._definitions import ERT_RELATIVE_CASE_METADATA_FILE, RMSExecutionMode
from fmu.dataio._logging import null_logger
from fmu.dataio._utils i... | equinor/fmu-dataio | src/fmu/dataio/_runcontext.py | .py | 5f9ccc6d6aebb52d | 7.52 | 10 |
"""Module for private utilities/helpers for DataIO class."""
from __future__ import annotations
import hashlib
import json
import shlex
import uuid
from pathlib import Path
from typing import TYPE_CHECKING, Final
import yaml
from ._definitions import ERT_RELATIVE_CASE_METADATA_FILE
from ._logging import null_logger... | equinor/fmu-dataio | src/fmu/dataio/_utils.py | .py | 42d1d5e4fd98a48d | 7.52 | 10 |
"""Extract and process stratigraphy mappings."""
from __future__ import annotations
import logging
from typing import Final
import pyarrow as pa
from fmu.settings import ProjectFMUDirectory
logger: Final = logging.getLogger(__name__)
logger.setLevel(logging.CRITICAL)
def has_stratigraphy_mappings(fmu_dir: Projec... | equinor/fmu-dataio | src/fmu/dataio/_workflows/case/_mappings.py | .py | 30b58097253cc145 | 7.52 | 10 |
"""Extract and process Ert observations."""
from __future__ import annotations
import logging
from typing import TYPE_CHECKING, Final, Literal
import polars as pl
import pyarrow as pa
if TYPE_CHECKING:
from ert.storage import Ensemble as ErtEnsemble
logger: Final = logging.getLogger(__name__)
logger.setLevel(... | equinor/fmu-dataio | src/fmu/dataio/_workflows/case/_observations.py | .py | 55c93f34d45f3ce2 | 7.52 | 10 |
"""Extract and process Ert parameters."""
from __future__ import annotations
import logging
from typing import TYPE_CHECKING, Final
import ert
import pyarrow as pa
from pydantic import TypeAdapter
from fmu.datamodels import ErtParameterMetadata
if TYPE_CHECKING:
import polars as pl
from ert.storage import ... | equinor/fmu-dataio | src/fmu/dataio/_workflows/case/_parameters.py | .py | 11e4569625565baf | 7.52 | 10 |
from __future__ import annotations
import copy
import getpass
import uuid
import warnings
from pathlib import Path
from typing import Any, Final, Self
from fmu.dataio._export import export_metadata_file
from fmu.dataio._global_config import (
build_global_configuration,
)
from fmu.dataio._logging import null_logg... | equinor/fmu-dataio | src/fmu/dataio/_workflows/case/export_case_metadata.py | .py | d21f489dd6c18210 | 7.52 | 10 |
# MIT License
#
# Copyright (c) 2026 Rizom-Lab
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, ... | RemiArq/RizomUVLink | RizomUVLink.py | .py | 8e5a02df2fb8203e | 7.48 | 8 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2024 LG Electronics Inc.
# SPDX-License-Identifier: Apache-2.0
from datetime import datetime, timezone, timedelta
_TIMESTAMP_FMT = '%Y%m%d_%H%M%S'
_DISPLAY_TZ = timezone(timedelta(hours=9)) # KST (UTC+9)
def current_timestamp_utc() -> str:
"""Return... | fosslight/fosslight_util | src/fosslight_util/time.py | .py | b6548d47a771347b | 7.56 | 12 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2020 LG Electronics Inc.
# SPDX-License-Identifier: Apache-2.0
from fosslight_scanner._get_input import get_input, get_input_mode
def test_get_input(monkeypatch):
# given
ask_msg = "Please enter the path to analyze:"
default_value = "default"... | fosslight/fosslight_scanner | tests/test__get_input.py | .py | 2c5d4a6e30787a95 | 7.14 | 18 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2020 LG Electronics Inc.
# SPDX-License-Identifier: Apache-2.0
import pytest
from fosslight_scanner._run_compare import write_result_json_yaml, parse_result_for_table, get_sample_html, \
write_result_html, write_result_xlsx, write_compared_result, get_... | fosslight/fosslight_scanner | tests/test__run_compare.py | .py | 09f337b23905a1d1 | 7.14 | 18 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2020 LG Electronics Inc.
# SPDX-License-Identifier: Apache-2.0
import pytest
import json
import sys
from fosslight_scanner.cli import main, set_args
def test_set_args(monkeypatch):
# Mocking os.path.isfile to return True
monkeypatch.setattr("os.pa... | fosslight/fosslight_scanner | tests/test_cli.py | .py | 70d74ac9f2a497b1 | 7.14 | 18 |
import shutil
import openpyxl
import pytest
from pathlib import Path
from fosslight_scanner.fosslight_scanner import run_scanner, download_source, init, run_main, run_dependency
from fosslight_util.oss_item import ScannerItem
from fosslight_util.constant import FOSSLIGHT_BINARY, FOSSLIGHT_DEPENDENCY, FOSSLIGHT_SOURCE, ... | fosslight/fosslight_scanner | tests/test_fosslight_scanner.py | .py | 2d2b502300d38d77 | 7.14 | 18 |
import json
import os
import logging
import threading
import time
import zmq
from typing import Optional
from ..core.settings import RIG_BUILDER_USER_PATH, HOSTS_FILE, DEFAULT_DISCOVERY_PORT
from .hostClient import HostClient
from .discoveryServer import DiscoveryServer
from ..core.utils import loadJson, saveJson
from... | azagoruyko/rigBuilder | core/connectionManager.py | .py | 6fd18ad021a841ae | 7.45 | 7 |
"""Git repository wrapper for running git commands in a given working directory."""
from __future__ import annotations
import os
import shlex
import shutil
import sys
import subprocess
from typing import List, Optional, Tuple
if sys.platform == "win32":
_startupinfo = subprocess.STARTUPINFO()
_startupinfo.d... | azagoruyko/rigBuilder | core/gitrepo.py | .py | 198e2e3754315d8d | 7.45 | 7 |
import logging
import sys
import os
from .settings import RIG_BUILDER_USER_PATH
class LogHandler(logging.Handler):
"""Generic log handler that pipes messages to an external target."""
def __init__(self):
super().__init__()
self._target = None
self._buffer = [] # Buffer for early logs be... | azagoruyko/rigBuilder | core/logger.py | .py | c231e7b435ca7051 | 7.45 | 7 |
import os
import re
import json
import xml.etree.ElementTree as ET
from typing import List, Tuple, Dict, Any
from . import core
from .uidManager import UidManager
from ..ai import engine
from .settings import settings
from .utils import loadJson, saveJson, fileHash
class ModuleIndexer:
"""
Handles indexing of... | azagoruyko/rigBuilder | core/moduleIndexer.py | .py | 89ab01f4fffe601e | 7.45 | 7 |
import os
import json
import logging
from .utils import loadJson, saveJson
RIG_BUILDER_PATH = os.path.normpath(os.path.dirname(os.path.dirname(__file__)))
RIG_BUILDER_USER_PATH = os.path.normpath(os.path.join(os.path.expanduser("~"), "rigBuilder"))
SETTINGS_PATH = os.path.join(RIG_BUILDER_USER_PATH, "settings.json")
... | azagoruyko/rigBuilder | core/settings.py | .py | 281812d03a8beaa5 | 7.45 | 7 |
import weakref
import inspect
class Signal:
"""A pure-Python observer implementation using weak references to prevent
memory leaks in background environments like the networking client.
"""
def __init__(self):
# Stores either weakref objects (for python methods/functions)
# or direct ... | azagoruyko/rigBuilder | core/signal.py | .py | 3f09478f46a7d1b6 | 7.45 | 7 |
import os
import re
import glob
from .settings import settings, MODULE_EXTS
from typing import Optional
class UidManager:
_uids: dict[str, str] = {} # uid: path
_mtimeCache: dict[str, tuple[float, str]] = {} # path: (mtime, uid)
@classmethod
def sync(cls):
"""Sync cached UIDs from modules dire... | azagoruyko/rigBuilder | core/uidManager.py | .py | 9c6327c0c4ad2461 | 7.45 | 7 |
import sys
import os
import re
import json
import textwrap
import hashlib
import io
import ast
import stat
import shutil
from contextlib import contextmanager, redirect_stdout, redirect_stderr
from datetime import datetime, timedelta
from typing import List, Any
def clamp(val: float, low: float, high: float) -> float... | azagoruyko/rigBuilder | core/utils.py | .py | 539e59390aabd07d | 7.45 | 7 |
from __future__ import annotations
import html
import os
import sys
import shutil
import xml.etree.ElementTree as ET
from typing import List, Protocol, Optional, Union, TYPE_CHECKING
if TYPE_CHECKING:
from xml.etree.ElementTree import Element
from .settings import (
settings,
Settings,
RIG_BUILDER_US... | azagoruyko/rigBuilder | core/workspace.py | .py | 69a7d0c69be87249 | 7.45 | 7 |
import os
import sys
import subprocess
import importlib
def getPythonExe():
"""Finds the actual python.exe path for the current application."""
exe = sys.executable
# Unreal Engine logic: sys.executable is the Editor itself
if "UnrealEditor" in exe:
ueBin = os.path.dirname(exe)
for rel... | azagoruyko/rigBuilder | host/ensure_zmq.py | .py | 52faf6f26d9d386d | 7.45 | 7 |
"""Module execution and code evaluation for the Rig Builder server."""
import io
import traceback
from ..core import Module, APIRegistry
from ..core.utils import captureOutput, jsonifyContext, getErrorStack, executeWithResult
# Persistent execution contexts for interactive (line-by-line) code execution.
# Keyed by a... | azagoruyko/rigBuilder | host/runner.py | .py | a2c8b21659fb18b0 | 7.45 | 7 |
"""Blender host server.
Run once inside Blender (e.g. from a startup script):
from rigBuilder.host.servers.blender import BlenderServer
BlenderServer(51605).start()
"""
import os
import bpy
from rigBuilder.host.servers import HostServer
class BlenderServer(HostServer):
"""Dispatches execution to Blend... | azagoruyko/rigBuilder | host/servers/blender.py | .py | f65b138ca2f58261 | 7.45 | 7 |
"""Houdini host server.
Run once inside Houdini (e.g. from a startup script or shelf tool):
from rigBuilder.host.servers.houdini import HoudiniServer
HoudiniServer(51605).start()
"""
import hou
from rigBuilder.host.servers import HostServer
class HoudiniServer(HostServer):
"""Dispatches execution to H... | azagoruyko/rigBuilder | host/servers/houdini.py | .py | 6e84ae9c01da43e3 | 7.45 | 7 |
"""Maya host server.
Run once inside Maya (e.g. from userSetup.py or Script Editor):
from rigBuilder.host.servers.maya import MayaServer
MayaServer(51605).start()
"""
import os
import maya.utils
import maya.cmds as cmds
import maya.OpenMaya as om
from rigBuilder.host.servers import HostServer
class MayaSer... | azagoruyko/rigBuilder | host/servers/maya.py | .py | bc54d7c7731b6d98 | 7.45 | 7 |
"""Standalone host server — runs module code inline, no main-thread dispatch needed.
Used for testing and for running rigBuilder without any host.
"""
from . import HostServer
class StandaloneServer(HostServer):
"""Standalone server — executes module code directly in the socket thread."""
def ping(self) -> ... | azagoruyko/rigBuilder | host/servers/standalone.py | .py | 8658f88f06114a29 | 7.45 | 7 |
"""Unreal Engine host server.
Run inside Unreal (e.g. from Python Script Editor):
from rigBuilder.host.servers.unreal import UnrealServer
UnrealServer(51605).start()
"""
import queue
import traceback
import unreal
from rigBuilder.host.servers import HostServer
class UnrealServer(HostServer):
"""Dispa... | azagoruyko/rigBuilder | host/servers/unreal.py | .py | 1a6412ae1a16074d | 7.45 | 7 |
import zmq
import json
ZMQ_PORT = 51607
class ZmqClient:
"""ZMQ Client for RigBuilder MCP"""
def __init__(self):
self.context = zmq.Context()
self.socket = self.context.socket(zmq.REQ)
# Timeout for socket if server is offline
self.socket.setsockopt(zmq.RCVTIMEO, 1000)
... | azagoruyko/rigBuilder | mcp_server/zmq_client.py | .py | d30218d80405ce52 | 7.45 | 7 |
import zmq
import json
from PySide6.QtCore import QObject, QTimer, QPersistentModelIndex
ZMQ_PORT = 51607
class RigBuilderAPI:
"""API for RigBuilder"""
mainWindow = None
@classmethod
def get_selected_modules(cls, req):
"""Get currently selected modules"""
modules = cls.mainWindow.tree... | azagoruyko/rigBuilder | mcp_server/zmq_server.py | .py | d668e700ec813f94 | 7.45 | 7 |
"""API Registry browser. Shows registered names, docstrings, and signatures for user reference."""
from __future__ import annotations
import inspect
from typing import Any
from ..core import APIRegistry
from .qt import *
def getObjectInfo(name: str, obj: Any) -> tuple[str, str, str, str]:
"""Helper to extract t... | azagoruyko/rigBuilder | ui/apiBrowser.py | .py | c3c08d6daef73fff | 7.45 | 7 |
import os
import difflib
import asyncio
from typing import List
from ..core import Module
from .qt import *
from .utils import centerWindow
from ..core.logger import logger
from .. import ai
from ..ai import engine
activeWorkers = []
def calculateModulesDiff(modules: List[Module]) -> str:
"""Calculate unified dif... | azagoruyko/rigBuilder | ui/diffBrowser.py | .py | ac8f79b652f3408f | 7.45 | 7 |
import os
import fnmatch
from typing import List, Optional
from .qt import *
class DirectoryWatcher(QObject):
"""Watch directories recursively and emit debounced change events."""
fileChanged = Signal(str)
def __init__(
self,
roots: List[str],
*,
debounceMs: int = 700,
... | azagoruyko/rigBuilder | ui/fileTracker.py | .py | 7906f78ceb7799df | 7.45 | 7 |
"""Authentication library, providing base classes for users of the library.
In order to use `gcal_sync.api`, you need to implement `gcal_sync.AbstractAuth`
which provides an OAuth access token. See Google's
[Authentication and authorization overview][1] for general details on how to
use OAuth, which involves things li... | allenporter/gcal_sync | gcal_sync/auth.py | .py | 53f99790439dff12 | 7.57 | 13 |
"""Library for exceptions using the Google Calendar API."""
class GoogleCalendarException(Exception):
"""Base class for all client exceptions."""
class ApiException(GoogleCalendarException):
"""Raised during problems talking to the API."""
class AuthException(ApiException):
"""Raised due to auth probl... | allenporter/gcal_sync | gcal_sync/exceptions.py | .py | 4da7b099b8e0384d | 7.57 | 13 |
"""Library for local storage of calendar data."""
from __future__ import annotations
from abc import ABC
from typing import Any
__all__ = [
"CalendarStore",
]
class CalendarStore(ABC):
"""Interface for external calendar storage.
This is an abstract class that may be implemented by callers to provide a... | allenporter/gcal_sync | gcal_sync/store.py | .py | bed6d05576c5a4b1 | 7.57 | 13 |
"""Library for handling local event sync.
This library implements the best practices for how to
[Synchronize resources](https://developers.google.com/calendar/api/guides/sync)
for a Google Calendar.
To use this library, you create an instance of a sync manager then run the
`run` method on a regular basis to pull down... | allenporter/gcal_sync | gcal_sync/sync.py | .py | a9e610bd0f064120 | 7.57 | 13 |
"""A Timeline is a set of events on a calendar.
A timeline can be used to iterate over all events, including expanded
recurring events. A timeline also supports methods to scan ranges of events
like returning all events happening today or after a specific date.
"""
from __future__ import annotations
import datetime
... | allenporter/gcal_sync | gcal_sync/timeline.py | .py | 9b0af639ee6a0ab2 | 7.57 | 13 |
"""Test fixtures for calendar API."""
from __future__ import annotations
import datetime
import json
from collections.abc import Awaitable, Callable, Generator
from json import JSONDecodeError
from typing import Any, TypeVar, cast
import aiohttp
import pytest
from aiohttp.test_utils import TestClient
from gcal_sync... | allenporter/gcal_sync | tests/conftest.py | .py | e1517c56d529ef96 | 8.07 | 13 |
"""Tests for local storage."""
import pytest
from gcal_sync.store import CalendarStore, InMemoryCalendarStore, ScopedCalendarStore
@pytest.fixture(name="store")
def fake_store() -> CalendarStore:
"""Fixture for a calendar store."""
return InMemoryCalendarStore()
async def test_empty_store(store: CalendarS... | allenporter/gcal_sync | tests/test_store.py | .py | 53f6458efff406a0 | 8.07 | 13 |
"""
conftest.py — Root-level pytest session configuration for IJT Console Client.
Sets basetemp to <project-root>/tmp/pytest (absolute, CWD-independent) so that
all pytest temp directories always land inside this project regardless of where
the test runner is invoked from (repo root, client dir, CI, etc.).
Set IJT_US... | umati/UA-for-Industrial-Joining-Technologies | OPC_UA_Clients/Release2/IJT_Console_Client/conftest.py | .py | 5aeb3045b5fe0998 | 7.95 | 7 |
"""Docker image freshness helpers for the OPC UA simulator.
Pure stdlib so this module is safe to import from regression tests that
must run in lightweight environments (no cryptography, no asyncua, no
pytest plugins beyond the core).
Behavior parity with the C# fixture's ShouldBuildDockerImage path lives in
OPC_UA_C... | umati/UA-for-Industrial-Joining-Technologies | OPC_UA_Clients/Release2/IJT_Console_Client/docker_freshness.py | .py | cc0192abae9a144b | 7.45 | 7 |
from __future__ import annotations
import hashlib
import json
import os
import shutil
import socket
import uuid
from dataclasses import dataclass
from datetime import datetime, timedelta, timezone
from pathlib import Path
def preserve_test_artifacts() -> bool:
return os.environ.get("IJT_PRESERVE_TEST_ARTIFACTS",... | umati/UA-for-Industrial-Joining-Technologies | OPC_UA_Clients/Release2/IJT_Console_Client/opcua_security_support.py | .py | 6a3d6a2e2b3a3ab9 | 7.45 | 7 |
"""Config flow for the sma webbox integration."""
from __future__ import annotations
import logging
from ipaddress import ip_address
from typing import Any
import homeassistant.helpers.config_validation as cv
import voluptuous as vol
from homeassistant import config_entries
from homeassistant.const import CONF_IP_ADD... | jpcornil-git/HA-sma | custom_components/sma_webbox/config_flow.py | .py | 3e47ddf8d66e7072 | 7.57 | 13 |
"""Sensor platform for SMA Webbox integration."""
from __future__ import annotations
import logging
from homeassistant.components.sensor import (
SensorDeviceClass,
SensorEntity,
SensorStateClass,
)
from homeassistant.config_entries import ConfigEntry
from homeassistant.const import (
UnitOfElectricCu... | jpcornil-git/HA-sma | custom_components/sma_webbox/sensor.py | .py | bbf17af6fd4c60a0 | 7.57 | 13 |
"""Create, update, toggle and delete firewall aliases.
Aliases are named groups of hosts, networks, ports or countries that firewall
and NAT rules reference by name. The existing `aliases` tool only searches; this
adds the write side, which the routing work needs for its source groups.
Updates read the whole node, me... | coreyhines/opnsense-mcp | opnsense_mcp/tools/alias_write.py | .py | f20a15ac3e62df42 | 7.52 | 10 |
"""Firewall alias listing tool for OPNsense."""
import logging
from typing import Any
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
class AliasesTool:
"""Tool for listing firewall aliases (IP groups, port groups, etc)."""
name = "aliases"
description = "List fi... | coreyhines/opnsense-mcp | opnsense_mcp/tools/aliases.py | .py | e166b3f8468de32d | 7.52 | 10 |
"""DHCP lease management tool for OPNsense."""
import asyncio
import logging
from typing import Any
from pydantic import BaseModel
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
# Fields that are internal DHCP protocol details rarely useful in LLM context.
_NOISY_FIELDS = fr... | coreyhines/opnsense-mcp | opnsense_mcp/tools/dhcp.py | .py | 449e638c702a939d | 7.52 | 10 |
"""MCP tool to list DHCP host reservations (dnsmasq search_host rows)."""
from __future__ import annotations
import logging
from typing import TYPE_CHECKING, Any
from opnsense_mcp.utils.dhcp_host import DhcpHostRecord
if TYPE_CHECKING:
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogge... | coreyhines/opnsense-mcp | opnsense_mcp/tools/dhcp_hosts.py | .py | 7062ce4092b7aae8 | 7.52 | 10 |
"""MCP tools for DHCP per-subnet DNS configuration."""
from __future__ import annotations
import logging
from typing import TYPE_CHECKING, Any
if TYPE_CHECKING:
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
_SCOPE_PROPERTIES = {
"subnet": {
"type": "string",... | coreyhines/opnsense-mcp | opnsense_mcp/tools/dhcp_subnet_dns.py | .py | 39791c6623f7fe17 | 7.52 | 10 |
"""Unbound DNS host override listing tool for OPNsense."""
import logging
from typing import Any
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
class DNSTool:
"""Tool for listing Unbound DNS host overrides."""
name = "dns"
description = "List Unbound DNS host ov... | coreyhines/opnsense-mcp | opnsense_mcp/tools/dns.py | .py | 1a533ebf5cf6cfa2 | 7.52 | 10 |
#!/usr/bin/env python3
"""Firewall logs retrieval and analysis tool for OPNsense."""
import logging
from typing import Any
from opnsense_mcp.utils.api import FirewallLogsFetchError, OPNsenseClient
from opnsense_mcp.utils.firewall_log_normalize import (
normalize_log_dict,
normalize_logs,
parse_int,
)
log... | coreyhines/opnsense-mcp | opnsense_mcp/tools/firewall_logs.py | .py | 8e922a30a586409c | 7.52 | 10 |
"""Firewall interface groups.
A group names a set of assigned interfaces so one rule can cover all of them.
Adding a network to an existing zone is otherwise a rule-per-interface job,
which is where rule sets drift apart.
Groups hold assigned interfaces only, so a VLAN device that has not been
assigned cannot join on... | coreyhines/opnsense-mcp | opnsense_mcp/tools/fw_groups.py | .py | ad9a041bc26707a6 | 7.52 | 10 |
"""Firewall rules management tool for OPNsense."""
import asyncio
import logging
from typing import Any
from pydantic import BaseModel
from opnsense_mcp.utils.api import OPNsenseClient
from opnsense_mcp.utils.mock_api import MockOPNsenseClient
logger = logging.getLogger(__name__)
def _parse_sequence(value: Any) -... | coreyhines/opnsense-mcp | opnsense_mcp/tools/fw_rules.py | .py | 395e1ffc239d9bc9 | 7.52 | 10 |
"""Gateway/WAN health status tool for OPNsense."""
import logging
from typing import Any
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
class GatewayStatusTool:
"""Tool for showing WAN gateway health (latency, packet loss)."""
name = "gateway_status"
description... | coreyhines/opnsense-mcp | opnsense_mcp/tools/gateway_status.py | .py | 9020af810b169b05 | 7.52 | 10 |
"""Compatibility shim for the canonical firewall logs tool."""
from __future__ import annotations
from typing import Any
from opnsense_mcp.tools.firewall_logs import FirewallLogsTool as _FirewallLogsTool
class GetLogsTool(_FirewallLogsTool):
"""Backward-compatible name for :class:`FirewallLogsTool`."""
na... | coreyhines/opnsense-mcp | opnsense_mcp/tools/get_logs.py | .py | c579e2b5abab88a7 | 7.52 | 10 |
"""Set an interface's address over SSH, because the API cannot.
This is the only place the project writes configuration outside the API, so the
reasoning matters as much as the code.
`NetworkInterface.xml` on the 26.7 series defines six fields — descr,
identifier, icon, optgroup, if, lock — and `AssignmentController`... | coreyhines/opnsense-mcp | opnsense_mcp/tools/interface_address.py | .py | 17629aefae1bda39 | 7.52 | 10 |
"""Interface list management tool for OPNsense."""
import logging
from typing import Any
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
class InterfaceListTool:
"""Tool for getting available firewall interface names."""
name = "interface_list"
description = "Get... | coreyhines/opnsense-mcp | opnsense_mcp/tools/interface_list.py | .py | b0bd698fb1f8fa8c | 7.52 | 10 |
"""LLDP (Link Layer Discovery Protocol) neighbor table management tool."""
import logging
from typing import Any
from pydantic import BaseModel
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
class LLDPEntry(BaseModel):
"""Model for LLDP neighbor table entries."""
i... | coreyhines/opnsense-mcp | opnsense_mcp/tools/lldp.py | .py | 227ebbcef160e281 | 7.52 | 10 |
"""Unbound DNS host override creation tool for OPNsense."""
import logging
from typing import Any
from opnsense_mcp.utils.api import OPNsenseClient, _record_type_for_server
logger = logging.getLogger(__name__)
class MkdnsTool:
"""Tool for adding Unbound DNS host overrides."""
name = "mkdns"
descriptio... | coreyhines/opnsense-mcp | opnsense_mcp/tools/mkdns.py | .py | 5c2102e4341fc213 | 7.52 | 10 |
"""Firewall rule creation tool for OPNsense."""
import logging
from typing import Any
from pydantic import BaseModel, field_validator
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
class FirewallRuleSpec(BaseModel):
"""Specification for creating a firewall rule."""
... | coreyhines/opnsense-mcp | opnsense_mcp/tools/mkfw_rule.py | .py | 532944c772bc9c82 | 7.52 | 10 |
"""MCP tool to delete a DHCP host reservation."""
from __future__ import annotations
import logging
from typing import TYPE_CHECKING, Any
if TYPE_CHECKING:
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
class RmDhcpHostTool:
"""Delete a dnsmasq DHCP host reservation... | coreyhines/opnsense-mcp | opnsense_mcp/tools/rm_dhcp_host.py | .py | 0406ea41c9887463 | 7.52 | 10 |
"""Unbound DNS host override deletion tool for OPNsense."""
import logging
from typing import Any
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
class RmdnsTool:
"""Tool for deleting Unbound DNS host overrides."""
name = "rmdns"
description = "Delete a DNS host ... | coreyhines/opnsense-mcp | opnsense_mcp/tools/rmdns.py | .py | bf9720599d0995f5 | 7.52 | 10 |
"""Firewall rule deletion tool for OPNsense."""
import logging
from typing import Any
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
class RmfwRuleTool:
"""Tool for deleting firewall rules in OPNsense."""
name = "rmfw_rule"
description = "Delete firewall rules"
... | coreyhines/opnsense-mcp | opnsense_mcp/tools/rmfw_rule.py | .py | bc8fa77f6e6bddd3 | 7.52 | 10 |
"""Firewall rule edit tool for OPNsense."""
import logging
from typing import Any
from opnsense_mcp.utils.api import OPNsenseClient
logger = logging.getLogger(__name__)
# Fields that can be edited on an existing rule
_EDITABLE_FIELDS = {
"description",
"interface",
"direction",
"ipprotocol",
"pr... | coreyhines/opnsense-mcp | opnsense_mcp/tools/set_fw_rule.py | .py | d3fc502b8930550f | 7.52 | 10 |
from time import time
from typing import Callable
from fastapi import HTTPException, Request, Response
from fastapi.routing import APIRoute
from ..common import logger
class RequestLoggingRoute(APIRoute):
"""A FastAPI route that will add request info to logs from this level down.
It has access to the path p... | NHSDigital/mesh-sandbox | src/mesh_sandbox/routers/request_logging.py | .py | 81968e27f329dd03 | 7.45 | 7 |
"""Plate diagram for the TCRi generative model, annotated with the knobs that tune it.
Run this to regenerate ``docs/images/model_pgm.png``::
.venv-docs/bin/python docs/model_pgm.py
The output is **committed** rather than built by Sphinx: the docs build installs only
``docs/requirements.txt`` (mirroring Read the... | nceglia/tcri | docs/model_pgm.py | .py | 813cf5fa6cb9249d | 7.5 | 9 |
"""Distance / divergence kernels for phenotype distributions.
Single home for the KL kernel (was `metrics.dkl` + `flux.dkl_func`, two copies)
plus L1 and a symmetric Jensen–Shannon option. All operate on 1-D probability
vectors, use log base 2 (bits), and share one eps floor. ``phenotype_distance``
is the string→calla... | nceglia/tcri | tcri/_compute/_distance.py | .py | c232e40499d7408e | 7.5 | 9 |
"""Device seam for the batched engine — **torch-first** (grafiti `_compute/_xp`
parity, adapted because tcri's numeric core is torch: the Dirichlet draws and the
softmax are `torch`, and torch≥2.4 is already a hard dep so torch.cuda is zero new
deps). `cupy` may be added later as a second backend; for now the ladder is... | nceglia/tcri | tcri/_compute/_xp.py | .py | 4903cd0e3cc80dfa | 7.5 | 9 |
"""Result shapes for the ``tl`` metrics, as ``TypedDict``s.
``@tl_result(schema=...)`` checks required-key PRESENCE on dict results. The shapes in the
trailing comments are documentation — nothing parses them — but they are the only place the
payload layout is written down, so keep them accurate.
Every metric returns... | nceglia/tcri | tcri/_state/schemas.py | .py | 5ffc745529616dce | 7.5 | 9 |
"""``compare_groups`` — INTERNAL. The one contrast implementation in the package.
Turns a per-unit frame (one row per replicate, e.g. per patient) into group contrasts.
Unpaired: Mann-Whitney U + two-sided p + delta of means. Paired (``paired=True``): per-unit
posterior-draw vectors aligned by ``pair_on`` -> signed de... | nceglia/tcri | tcri/_stats/_compare.py | .py | b0a876e8b4db9ecb | 7.5 | 9 |
"""Shared statistics helpers.
The significance / AUROC helpers plus the posterior-summary primitives the metric layer
needs (true HDI, signed-direction probability).
``auc_and_label_permutation`` and ``bootstrap_auc`` are re-exported as ``tcri.ut.*``. They
are complementary -- a permutation p-value against shuffled l... | nceglia/tcri | tcri/_stats/_core.py | .py | 3c3f32ce9dea32f2 | 7.5 | 9 |
"""``tcri.diag`` training diagnostics (§9.2) — the two model plots relocated off
``TCRIModel`` (``plot_loss`` → :func:`loss`, ``plot_archetypes`` → :func:`archetypes`)."""
from __future__ import annotations
import numpy as np
__all__ = ["loss", "archetypes"]
def _series(hist, key):
"""Pull a 1-D value array fro... | nceglia/tcri | tcri/diagnostics/_training.py | .py | 7864b6ae01eb4a3d | 7.5 | 9 |
"""Accessors for cached ``tl`` results — ``tcri.get.*``.
Every ``tl`` metric stores its result under a namespaced ``uns`` key and returns the same
object. This module is how everything else reads it back without knowing the blob format:
``pl`` renders from here, and so should any user code that wants the table a plot ... | nceglia/tcri | tcri/get.py | .py | bb1cab0eaf25857d | 7.5 | 9 |
"""Prior distributions for the TCRI generative model.
`VampPrior` is a learnable mixture-of-encoders prior over the latent space;
`MixtureDirichlet` is the per-clonotype mixture-of-Dirichlets used as the
clonotype-level phenotype prior.
"""
import torch
import pyro.distributions as dist
__all__ = ["MixtureDirichlet",... | nceglia/tcri | tcri/model/_priors.py | .py | 8ca3557793f71cac | 7.5 | 9 |
"""``pl.delta_*`` (§8.4) — cache renderers for the paired entropies.
Two views of one cached result, selected by ``kind``:
``"delta"`` (default)
The change itself, with a zero rule. Mass either side of zero is the direction.
``"endpoints"``
``cov_from`` and ``cov_to`` side by side, connected per replicate. T... | nceglia/tcri | tcri/plotting/_delta.py | .py | cfe170fd21399bd1 | 7.5 | 9 |
"""``pl.clonotypic_entropy`` / ``pl.phenotypic_entropy`` (§8.1) — cache renderers.
The two differ in one thing, and it is a property of the metric rather than a style choice:
H(c|phi) has one value per PHENOTYPE, a handful of named categories that belong on the x
axis; H(phi|c) has one value per CLONE, which is the wh... | nceglia/tcri | tcri/plotting/_entropy.py | .py | 0cf784f899a7f918 | 7.5 | 9 |
import numpy as np
import matplotlib.patches as mpatches
import matplotlib.colors as mcolors
class SankeyNode(object):
"""Object for sankey node"""
def __init__(self, x, y, val, dx = 0.2, color = None, **kwargs):
self.x = x
self.y = y
self.dx = dx
self.dy = val
self.x_... | nceglia/tcri | tcri/plotting/_sankey.py | .py | 1dd780ef8e6f678b | 7.5 | 9 |
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