text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
values | hash stringlengths 16 16 | score float64 7 8.5 | stars int64 0 237k |
|---|---|---|---|---|---|---|
#!/usr/bin/env python3
# Quantify editing levels of known sites in a BAM file
# Based on Query_Editing_Level.GRCh37.20161110.pl from https://github.com/vsoch/mpileup
import argparse
import os
import subprocess
import sys
def parse_pileup(pileup_line, minbasequal, offset):
"""Parse a pileup line and return counts... | PejLab/Pantry | phenotyping/scripts/RNA_editing/query_editing_level.py | .py | 546f45d62e07277a | 7.66 | 20 |
# written by Yang Li for the Leafcutter repo
# forked by mdshw5 and converted to Python3
# https://github.com/mdshw5/leafcutter/blob/master/scripts/leafcutter_cluster_regtools.py
# Edited for use in Pantry by Daniel Munro
# requires regtools installation
# https://github.com/griffithlab/regtools
# /home/yangili1/t... | PejLab/Pantry | phenotyping/scripts/leafcutter_cluster_regtools_py3.py | .py | c005599f8e39d474 | 7.66 | 20 |
"""Normalize phenotypes in a BED file for direct use in QTL mapping"""
import argparse
import numpy as np
import pandas as pd
import scipy.stats as stats
from sklearn.impute import KNNImputer
def impute_knn(X):
"""Impute missing values using KNN imputation"""
imputer = KNNImputer(n_neighbors=10, weights='uni... | PejLab/Pantry | phenotyping/scripts/normalize_phenotypes.py | .py | 5db5b49371d745d2 | 7.66 | 20 |
"""Generate the fastq files and map for the test dataset
It subsets 16 randomly chosen Geuvadis samples to reads in the first 2 Mb of chr1.
Those complete samples must already be aligned to be able to subset by region.
"""
import gzip
from pathlib import Path
from subprocess import run
def subset_fastq(fastq: Path, ... | PejLab/Pantry | phenotyping/scripts/test_subset_fastq.py | .py | 55879341e56012e0 | 7.16 | 20 |
"""Derive plain-text lines from an OpenAPI document for search indexing."""
from __future__ import annotations
import json
from pathlib import Path
from typing import Any
import yaml
from sphinx.errors import ExtensionError
_HTTP_METHODS = frozenset(
("get", "post", "put", "delete", "patch", "head", "options", ... | SAP/swagger-plugin-for-sphinx | swagger_plugin_for_sphinx/_openapi_index.py | .py | 7bb2641cd518673f | 7.52 | 10 |
"""Sphinx Swagger Plugin."""
from __future__ import annotations
import json
from collections.abc import Iterator
from importlib.metadata import version
from pathlib import Path
from typing import Any
from urllib import request
import jinja2
from docutils import nodes
from docutils.parsers.rst import directives
from ... | SAP/swagger-plugin-for-sphinx | swagger_plugin_for_sphinx/_plugin.py | .py | e47aea9eb7048049 | 7.52 | 10 |
"""
Contains pulumi.dynamic.ResourceProvider implementations for Google Groups Memberships
"""
import textwrap
import time
from functools import cache
from typing import TYPE_CHECKING, Optional, TypedDict
from urllib.parse import urlencode
import google.auth
import googleapiclient.discovery
import pulumi.dynamic
from... | populationgenomics/cpg-infrastructure | cpg_infra/abstraction/google_group_membership.py | .py | 0844175e6e8255f4 | 7.42 | 6 |
# flake8: noqa: ANN001,ARG002
"""
Contains pulumi.dynamic.ResourceProvider implementations for Google Groups settings.
"""
from functools import cache
import google.auth
import googleapiclient.discovery
import pulumi
import pulumi.dynamic
from google.auth.transport.requests import Request
class GoogleGroupSettings(... | populationgenomics/cpg-infrastructure | cpg_infra/abstraction/google_group_settings.py | .py | 115a1d552f0173e6 | 7.42 | 6 |
# flake8: noqa: ANN001
"""
Pulumi provider for interacting with metamist
"""
import functools
from collections import defaultdict
from typing import Any
import pulumi
from metamist.apis import ProjectApi
@functools.cache
def get_projects() -> dict[str, dict]:
"""
Get all projects from metamist, useful to a... | populationgenomics/cpg-infrastructure | cpg_infra/abstraction/metamist.py | .py | b526927527b0e675 | 7.42 | 6 |
# flake8: noqa: PGH003,ANN001,DTZ001,ARG001,ANN002,
"""
Cloud function that runs once a month that synchronises a portion of data from:
FROM: billing-admin-290403.billing.gcp_billing_export_v1_01D012_20A6A2_CBD343
TO: billing-admin-290403.billing_aggregate.aggregate
Tasks:
- Needs to convert {billing_project_i... | populationgenomics/cpg-infrastructure | cpg_infra/billing_aggregator/aggregate/gcp.py | .py | b4a9b5a20e39f0dc | 7.42 | 6 |
# flake8: noqa: ARG001,ANN001,ANN002,ANN401,ERA001,PGH003,DTZ001,C901
"""
A cloud function that synchronises HAIL billing data to BigQuery
TO: billing-admin-290403.billing_aggregate.aggregate
Notes:
- The service.id should be 'hail'
Tasks:
- Only want to transfer data from the projects in the server-config
- N... | populationgenomics/cpg-infrastructure | cpg_infra/billing_aggregator/aggregate/hail.py | .py | bb11bc5da5d4d34f | 7.42 | 6 |
# flake8: noqa: PGH003,ANN001,DTZ001,ARG001,ANN002,S105,PD901,DTZ007
"""
Cloud function that runs once a day that downloads data billing from ICE
Tasks performed:
1. Connect to ICA API to get JWT token
2. Download CSV Billing data for selected dates
3. Upsert data into ICA_RAW_TABLE
4. Convert / migrate data into GCP ... | populationgenomics/cpg-infrastructure | cpg_infra/billing_aggregator/aggregate/ica.py | .py | 8db1cb1fa5d71384 | 7.42 | 6 |
"""
This cloud function runs every hour, 24 hours behind the regular seqr.py
Reason for this is Cromwell billing data processed by seqr.py are updated much later
(more than 5 hours) after seqr finishes its job of migrating data
Reason we need to create a new function and not reused existing is:
We only allow one clou... | populationgenomics/cpg-infrastructure | cpg_infra/billing_aggregator/aggregate/seqr24.py | .py | d6943609aa71d4b4 | 7.42 | 6 |
"""A Cloud Function to process GCP billing budget notifications."""
import base64
import binascii
import json
import logging
import os
import socket
from typing import Any
import flask
import functions_framework
import slack
from google.auth.exceptions import RefreshError, TransportError
from google.cloud import secr... | populationgenomics/cpg-infrastructure | cpg_infra/billing_aggregator/gcp_cost_control/main.py | .py | 3090703a45726b66 | 7.42 | 6 |
"""Helpers for flagging GCP projects with unlinked (disabled) billing.
These live alongside the cost-report Cloud Function so they are bundled into
its source archive (see billing_aggregator/driver.py::create_source_archive).
The sibling `gcp_cost_control` function has its own `is_billing_enabled`
implementation (bui... | populationgenomics/cpg-infrastructure | cpg_infra/billing_aggregator/gcp_cost_report_slack_bot/billing_status.py | .py | dda10329d00d5269 | 7.42 | 6 |
# pylint: disable=too-many-locals
"""A Cloud Function to send a daily GCP cost report to Slack."""
import calendar
import json
import logging
import os
from collections import defaultdict
from datetime import datetime, timedelta
from functools import lru_cache
from math import ceil
from typing import Any, Generator, T... | populationgenomics/cpg-infrastructure | cpg_infra/billing_aggregator/gcp_cost_report_slack_bot/main.py | .py | bcde764adb4673ac | 7.42 | 6 |
# flake8: noqa:DTZ005,DTZ006,DTZ007,PLR2004,C901,PLR2004
"""A Cloud Function to update the status of genomic samples."""
import asyncio
import json
import logging
import os
from base64 import b64decode
from datetime import date, datetime, timedelta
from functools import cache
import functions_framework
import google.... | populationgenomics/cpg-infrastructure | cpg_infra/billing_aggregator/monthly_aggregate/main.py | .py | 4cae9f9c49faa0ab | 7.42 | 6 |
# flake8: noqa: ANN401,ARG001
"""A Cloud Function to collect budget information from projects billing
and store it in the bq table.
"""
import json
import logging
import os
from functools import cache
from typing import Any, Sequence
import functions_framework
import google.cloud.bigquery as bq
import google.cloud.bi... | populationgenomics/cpg-infrastructure | cpg_infra/billing_aggregator/update_budget/main.py | .py | 057d44906343217a | 7.42 | 6 |
"""
Base model for CPG infra config
Contains some sensible defaults:
frozen=True ensures that config isn't mutated after creation
extra='forbid' ensures that accidentally misnamed config keys aren't accepted
"""
from typing import Any, Self
from pydantic import BaseModel, ConfigDict
class ConfigModel(BaseModel):... | populationgenomics/cpg-infrastructure | cpg_infra/config/base.py | .py | 9098daf3057f10ac | 7.42 | 6 |
# flake8: noqa: ANN102,ANN204,ANN206,C901,ANN401,PLR2004,ERA001
"""
This module contains all the configuration objects that are used to
describe the CPG infrastructure, including what's required from a
specific dataset.
"""
from enum import Enum
from typing import Any, Literal
import pulumi
from pydantic import Field... | populationgenomics/cpg-infrastructure | cpg_infra/config/config.py | .py | 754f4e3dcd96f387 | 7.42 | 6 |
# flake8: noqa: PGH003,ANN204,C901,ERA001,ANN401,SIM102
"""
Constants and helper functions used across the driver package.
"""
from __future__ import annotations
import re
from typing import Iterable
import toml
import xxhash
from toml_sort import TomlSort
AccessLevel = str
SM_TEST_READ = 'test-read'
SM_TEST_WRIT... | populationgenomics/cpg-infrastructure | cpg_infra/driver/constants.py | .py | 8a7fc49b7a6c365b | 7.42 | 6 |
# flake8: noqa: F401,PGH003,ANN204
"""
CPGDatasetInfrastructure - infrastructure for a single dataset across
one or more cloud providers.
"""
from __future__ import annotations
from functools import cached_property
from typing import TYPE_CHECKING
# Side-effect imports: bringing each concrete ``CloudInfraBase`` subc... | populationgenomics/cpg-infrastructure | cpg_infra/driver/dataset_infrastructure.py | .py | 75219b2a04f7bd27 | 7.42 | 6 |
# flake8: noqa: ANN204
"""
Group data structures: GroupMember, Group, and GroupProvider.
"""
from __future__ import annotations
from collections import defaultdict
from typing import TYPE_CHECKING
import graphlib
from cpg_infra.config import CPGInfrastructureUser
if TYPE_CHECKING:
from cpg_infra.abstraction.ba... | populationgenomics/cpg-infrastructure | cpg_infra/driver/groups.py | .py | 8b9d2553cffeb5a7 | 7.42 | 6 |
# flake8: noqa: ERA001, ANN204, ANN102
"""
GitHub Workload Identity Federation (WIF) setup for Pulumi
This module provides functionality to set up GitHub repositories with
GCP Workload Identity Federation for OIDC authentication and Artifact Registry access.
It also includes PAM broker service account setup for Privi... | populationgenomics/cpg-infrastructure | cpg_infra/github_wif/driver.py | .py | 9909f1ece346ad91 | 7.42 | 6 |
"""Ability to extend CPG infrastructure with plugins"""
import importlib.metadata
from cpg_infra.config import CPGInfrastructureConfig
PLUGIN_ENTRYPOINT_NAME = 'cpginfra.plugins'
class CpgInfrastructurePlugin:
"""Billing aggregator Infrastructure (as code) for Pulumi"""
def __init__(
self,
... | populationgenomics/cpg-infrastructure | cpg_infra/plugin/__init__.py | .py | 9683461f77726f89 | 7.42 | 6 |
#!/usr/bin/env python3
# flake8: noqa: ANN001
"""Removes group memberships matching a given regular expression."""
import re
import sys
from urllib.parse import urlencode
import googleapiclient.discovery
CUSTOMER_ID = 'C010ys3gt'
PAGE_SIZE = 1000 # How many results to fetch per request.
def list_all_groups(servic... | populationgenomics/cpg-infrastructure | groups_cleanup/main.py | .py | b5ea9f06f713126b | 7.42 | 6 |
"""
Sometimes during tricky pulumi imports, the state file can get out of order.
This script will check for that and re-order the state file if necessary.
DANGER:
This operates on state directly, you should very carefully check the output
and keep backups before overwriting the state file.
"""
import json
im... | populationgenomics/cpg-infrastructure | reorder_state_file.py | .py | 73664f0360f37db1 | 7.42 | 6 |
# flake8: noqa: A003,DTZ005
"""
If Pulumi suddenly loses a bunch of resources but they still exist in the cloud,
this script can be used to generate statements to import them back into state.
It operated on the output of:
pulumi preview --diff -p 20 --non-interactive --json
It will generate a bunch of statements... | populationgenomics/cpg-infrastructure | scripts/repair_state_202306.py | .py | e7d384b9971496ce | 7.42 | 6 |
#!/usr/bin/env python3
"""Computes aggregate bucket disk usage stats."""
import gzip
import json
import logging
import sys
from collections import defaultdict
import google.api_core.exceptions
from cloudpathlib import AnyPath
from google.cloud import storage
from humanize import naturalsize
from cpg_utils.config im... | populationgenomics/cpg-infrastructure | storage_visualization/disk_usage.py | .py | 7b6b7be63c242845 | 7.42 | 6 |
#!/usr/bin/env python3
# flake8: noqa: PLR2004,SLF001
"""Main entrypoint for the storage visualization driver."""
import sys
# See requirements.txt for why we're disabling the linter warnings here.
import hailtop.batch as hb # pylint: disable=import-error
from cpg_utils.config import output_path
from cpg_utils.git ... | populationgenomics/cpg-infrastructure | storage_visualization/main.py | .py | b523962f51e0cf5e | 7.42 | 6 |
"""Asynchronous Python client for NET2GRID devices."""
from __future__ import annotations
import asyncio
import json
import socket
from dataclasses import dataclass
from importlib import metadata
from typing import Any, Self
from aiohttp import ClientError, ClientSession
from aiohttp.hdrs import METH_GET
from yarl i... | klaasnicolaas/python-gridnet | src/gridnet/gridnet.py | .py | cc271db15db7f097 | 7.48 | 8 |
"""Models for GridNet."""
from __future__ import annotations
from dataclasses import dataclass
from typing import Any
@dataclass
class SmartBridge:
"""Object representing an SmartBridge response from the device."""
power_flow: int
energy_consumption_total: float
energy_production_total: float
... | klaasnicolaas/python-gridnet | src/gridnet/models.py | .py | ea1f1243c30983f9 | 7.48 | 8 |
# ruff: noqa: S101
from keywin import KeyCode
from keywin.keyboard import hold, hold_unicode, press, release, release_unicode, send_events, write
from keywin.keyboard.helpers import KeyboardEvent
def test_keyboard_event() -> None:
"""
Summary
-------
test the `KeyboardEvent` NamedTuple
"""
as... | winstxnhdw/KeyWin | tests/test_keyboard.py | .py | fc4cb963dfeb4767 | 7.12 | 16 |
# ruff: noqa: S101
from keywin.mouse import (
left_click,
left_press,
left_release,
middle_click,
middle_press,
middle_release,
move,
move_relative,
right_click,
right_press,
right_release,
scroll,
scroll_horizontal,
send_events,
xbutton1_click,
xbutton1_... | winstxnhdw/KeyWin | tests/test_mouse.py | .py | 930c9c5ad05e44a8 | 8.12 | 16 |
#!/usr/bin/env python3
"""
add_conditions_structure.py — Parse DC saving throws and conditions from action/ability
descriptions and add structured fields to special_abilities, actions, and legendary_actions.
Usage:
python3 scripts/add_conditions_structure.py json/en-us/monsters.json --lang en-us
python3 script... | alexandregpereira/Monster-Compendium-Content | scripts/add_conditions_structure.py | .py | c89fac83cb55f04a | 7.48 | 8 |
"""MongoDB connection and collection setup."""
import os
import sys
DEFAULT_URI = "mongodb://root:devpassword@localhost:27017/compendium?authSource=admin"
DEFAULT_DB = "compendium"
def _load_dotenv():
path = os.path.join(os.path.dirname(__file__), "..", "..", ".env")
path = os.path.abspath(path)
if not ... | alexandregpereira/Monster-Compendium-Content | scripts/mongo/db.py | .py | 70b26fffb940aa44 | 7.48 | 8 |
"""MongoDB $jsonSchema validators.
The enums are taken from the corpus itself rather than from CLAUDE.md, because
the two disagree in places. Anything the corpus actually contains must pass --
a validator that rejects existing content would block the editor from saving a
document it had just loaded.
"""
MONSTER_TYPES... | alexandregpereira/Monster-Compendium-Content | scripts/mongo/schemas.py | .py | 2d4376e7ef6bc33d | 7.48 | 8 |
#!/usr/bin/env python3
"""
translate_conditions.py — Full pipeline: Google Translate a conditions file, then optionally review with Claude.
This script orchestrates the two standalone scripts:
- google_translate_conditions.py (translation step)
- claude_review_conditions.py (review and fix step)
Both can als... | alexandregpereira/Monster-Compendium-Content | scripts/translate_conditions.py | .py | ec62db930c9a7bf6 | 7.48 | 8 |
#!/usr/bin/env python3
"""
translate_lore.py — Full pipeline: Google Translate a lore file, then optionally review with Claude.
This script orchestrates the two standalone scripts:
- google_translate_lore.py (translation step)
- claude_review_lore.py (review and fix step)
Both can also be run independently w... | alexandregpereira/Monster-Compendium-Content | scripts/translate_lore.py | .py | 583e1822be54d462 | 7.48 | 8 |
#!/usr/bin/env python3
"""
translate_monster.py — Full pipeline: Google Translate a monsters file, then optionally review with Claude.
This script orchestrates the two standalone scripts:
- google_translate_monsters.py (translation step)
- claude_review_monsters.py (review and fix step)
Both can also be run ... | alexandregpereira/Monster-Compendium-Content | scripts/translate_monster.py | .py | 86d9555ecbdd6f13 | 7.48 | 8 |
#!/usr/bin/env python3
"""
translate_spells.py — Full pipeline: Google Translate a spells file, then optionally review with Claude.
This script orchestrates the two standalone scripts:
- google_translate_spells.py (translation step)
- claude_review_spells.py (review and fix step)
Both can also be run indepen... | alexandregpereira/Monster-Compendium-Content | scripts/translate_spells.py | .py | c5203c6993636dfa | 7.48 | 8 |
"""Download files from Tor websites. Used to download data from ransomware leak sites.
Uses streamed file downloads and restarts if a file is not fully downloaded.
Gets the list of URLs to download either from a JSON file or from another URL (work in progress).
Configuration options can be given in either a JSON file... | Ian-Costa18/TorDownloader | tor_downloader/__main__.py | .py | 033ca7f0ffd8994a | 7.5 | 9 |
"""Shared coercion helpers for configuration and runtime limits."""
from __future__ import annotations
from typing import Any, Iterable
def coerce_cli_value(raw_value: str) -> Any:
"""Coerce CLI scalar values using existing project semantics."""
if raw_value.isnumeric():
return int(raw_value)
l... | Ian-Costa18/TorDownloader | tor_downloader/utils/config_utils.py | .py | b94295fb4eeb0577 | 7.5 | 9 |
"""Utilities for run-scoped log file management.
This module handles:
1) per-run timestamped log file naming,
2) compression of prior plain-text logs,
3) retention cleanup of compressed archives.
"""
from __future__ import annotations
import gzip
import shutil
from datetime import datetime
from pathlib import Path
... | Ian-Costa18/TorDownloader | tor_downloader/utils/log_management.py | .py | 5cccb67a6a1a14b0 | 7.5 | 9 |
"""Logging handler and formatter to use with TQDM.
Add the logging handler to a logger to write logged data to TQDM output.
Add the formatter to format the logs to: "(%(asctime)s) [+/-/?/*/***] %(message)s"
"""
import logging
import tqdm
from colorama import Back, Fore, Style, init
class TqdmLoggingHandler(logging... | Ian-Costa18/TorDownloader | tor_downloader/utils/logging_handlers.py | .py | 01d883223e531369 | 7.5 | 9 |
"""Output path policy for hostless relative layout."""
from __future__ import annotations
from pathlib import Path, PurePosixPath
from typing import Iterable
from urllib.parse import unquote, urlparse
def _sanitize_part(part: str) -> str:
"""Sanitize one path segment while keeping it readable."""
if part in... | Ian-Costa18/TorDownloader | tor_downloader/utils/output_layout.py | .py | 263a662ec78fb304 | 7.5 | 9 |
"""Shared URL normalization helpers for HTTP requests."""
from __future__ import annotations
from urllib.parse import quote, unquote, urlsplit, urlunsplit
def ensure_trailing_slash(url: str) -> str:
"""Return URL with one trailing slash when non-empty."""
if url == "":
return ""
return url if ur... | Ian-Costa18/TorDownloader | tor_downloader/utils/url_utils.py | .py | ae1653f82ba5a8af | 7.5 | 9 |
import argparse
import os
import exiftool
import pathlib
def extract_metadata(image_path):
"""
Extract image metadata using exiftool binary and exiftool wrapper pyexiftool
Args:
image_path (Path): Path to image
Returns:
str: metadata
"""
# TODO: add linux option and move to pa... | mediocreatmybest/gaslightingeveryone | Scripts/working/exif2txt.py | .py | 0cf792bcb812c95f | 7.52 | 10 |
import os
from func import walk_path_plus
def create_captions(file_path, ext="txt", force=False, debug=False, encoding="utf-8"):
""" Create captions with each file, we are ignore filtering, this can be done in the main() """
base_name, _ = os.path.splitext(os.path.basename(file_path))
caption_file_path = o... | mediocreatmybest/gaslightingeveryone | Scripts/working/filename_test.py | .py | 5ad6896ac76a1137 | 7.02 | 10 |
import codecs
import os
# Function to extract nested json data,
# https://hackersandslackers.com/extract-data-from-complex-json-python/
def json_extract(obj, key):
""" Recursively fetch values from nested JSON """
arr = []
def extract(obj, arr, key):
""" Recursively search for values of key in J... | mediocreatmybest/gaslightingeveryone | Scripts/working/func.py | .py | 37278ce476fe01c1 | 7.52 | 10 |
import os
def os_walk_plus(path, max_depth=None, file_filter=None):
"""
Recursively go walk about in a directory tree up to a specified maximum depth and optionally filter files by extension.
Args: path (str): The root directory to start walking.
max_depth (int): The maximum depth of directo... | mediocreatmybest/gaslightingeveryone | Scripts/working/func_os_walk_plus.py | .py | ec627cb582567d9b | 7.52 | 10 |
import mimetypes
import os
def sanitise_char(char_string, debug=False):
"""Removes unwanted characters and extensions from a string, useful for filenames"""
# Add additional characters if needed
invalid_chars = r'\\/:*?"\'<>|'
new_char_string = ''.join(c for c in char_string if c not in invalid_chars... | mediocreatmybest/gaslightingeveryone | Scripts/working/sanitise_func.py | .py | 7c34954f32d7407a | 7.52 | 10 |
# MIT License
#
# Copyright (c) 2021 Matthew Schweiss
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, me... | mediocreatmybest/gaslightingeveryone | Scripts/working/walkywalk_func.py | .py | da227da567ea4b88 | 7.52 | 10 |
import codecs
import os
# Function to extract nested json data,
# https://hackersandslackers.com/extract-data-from-complex-json-python/
def json_extract(obj, key):
""" Recursively fetch values from nested JSON """
arr = []
def extract(obj, arr, key):
""" Recursively search for values of key in J... | mediocreatmybest/gaslightingeveryone | tools/func.py | .py | a91d422a4235df4a | 7.52 | 10 |
import re
def strictfilter(textstring, string2remove):
""" Simple Regex filter that does not ignore character case"""
return re.sub(rf'{string2remove}', '', textstring)
def softfilter(textstring, string2remove):
""" Simple regex filter that ignores character case """
return re.sub(rf'{string2remove}',... | mediocreatmybest/gaslightingeveryone | tools/func_filter.py | .py | e86bddadf9235222 | 7.52 | 10 |
import os
import re
def sanitise_char(char_string, debug=False, strict_mode=False):
""" Removes unwanted characters and extensions from a string
useful for moving files from Linux to Windows and back
"""
# Split the filename and extension
filename, extension = os.path.splitext(char_string)
... | mediocreatmybest/gaslightingeveryone | tools/func_sanitise.py | .py | 4d5678dc6ea8e32b | 7.52 | 10 |
import argparse
import hashlib
import os
from pathlib import Path
import pandas as pd
import pyarrow as pa
import pyarrow.parquet as pq
from PIL import Image
def create_data_row(filename, image_path, caption_path=None, caption1_path=None, caption2_path=None, url_path=None, tags_path=None):
""" Creates a data row... | mediocreatmybest/gaslightingeveryone | tools/images2parq.py | .py | 8776bace430d4341 | 7.52 | 10 |
import argparse
import json
import os
import sys
from pathlib import Path
from tqdm import tqdm
def json_extract(obj, key):
""" Recursively fetch values from nested JSON:
See: https://hackersandslackers.com/extract-data-from-complex-json-python/
"""
arr = []
def extract(obj, arr, key):
... | mediocreatmybest/gaslightingeveryone | tools/json2export2url_tags.py | .py | a3563714ea57cedc | 7.52 | 10 |
import argparse
import os
from pathlib import Path
import pandas as pd
# Magic save function
def save_file(file_path, data, mode='w', encoding='utf-8', debug=False):
""" Function to save a file, defaults to write mode,
if wb is passed it will save in binary mode without encoding."""
if not debug:
... | mediocreatmybest/gaslightingeveryone | tools/parq2folder.py | .py | 2ca04d0484d3b0e7 | 7.52 | 10 |
from ovos_plugin_manager.utils import PluginConfigTypes, PluginTypes
from ovos_utils.log import LOG
from ovos_bus_client.util import get_mycroft_bus
from ovos_config import Configuration
# TODO - restore this log in next release with updated version string
#log_deprecation("ovos_plugin_manager.audio has been deprecat... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/audio.py | .py | e5517544ad592c8c | 7.59 | 14 |
from typing import Optional
from ovos_plugin_manager.utils import PluginTypes, PluginConfigTypes
from ovos_plugin_manager.templates.audio2ipa import Audio2IPA
from ovos_utils.log import LOG
def find_audio2ipa_plugins() -> dict:
"""
Find all installed plugins
@return: dict plugin names to entrypoints
"... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/audio2ipa.py | .py | 6ed15b9888c1d6a0 | 7.59 | 14 |
from ovos_plugin_manager.templates.transformers import AudioTransformer, AudioLanguageDetector
from ovos_plugin_manager.utils import PluginTypes, PluginConfigTypes
def find_audio_transformer_plugins() -> dict:
"""
Find all installed plugins
@return: dict plugin names to entrypoints
"""
from ovos_p... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/audio_transformers.py | .py | 31bbfd6606e384d3 | 7.59 | 14 |
from ovos_plugin_manager.templates.transformers import DialogTransformer
from ovos_plugin_manager.utils import PluginTypes
from ovos_plugin_manager.utils import load_plugin, find_plugins
# TTS transformer helpers live in ovos_plugin_manager.tts_transformers,
# re-exported here for backwards compatibility
from ovos_plug... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/dialog_transformers.py | .py | 93db1e09ee56a1d4 | 7.59 | 14 |
from typing import List, Optional
from ovos_plugin_manager.utils import PluginTypes, PluginConfigTypes
from ovos_plugin_manager.templates.gui import GUIExtension
from ovos_utils.log import LOG
def find_gui_plugins() -> dict:
"""
Find all installed plugins
@return: dict plugin names to entrypoints
"""... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/gui.py | .py | 8e97d325374ad439 | 7.59 | 14 |
"""
DEPRECATED: Use ovos_hardware_helpers.led instead.
This module maintains backwards compatibility with the old Color enum while
re-exporting AbstractLed from ovos-hardware-helpers. New code should use
ovos_hardware_helpers.led and ovos_color_parser.models.sRGBAColor.
"""
from enum import Enum
from typing import Uni... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/hardware/led/__init__.py | .py | 94f8f0cd90b98441 | 7.59 | 14 |
import os
import sys
from os.path import exists, dirname
from subprocess import PIPE, Popen
from typing import Iterator, List, Optional, Tuple, Union
import requests
from combo_lock import NamedLock
from ovos_utils.log import LOG, log_deprecation, deprecated
from ovos_plugin_manager.exceptions import PipException
fro... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/installation.py | .py | b3f6f6c386887082 | 7.59 | 14 |
"""Discovery + loading for ``opm.media.provider`` plugins.
MediaProvider plugins are the catalog/search layer the OCP pipeline queries
in-process, replacing OCP search skills. See
:mod:`ovos_plugin_manager.templates.media_provider`.
"""
from typing import Dict, List, Optional
from ovos_utils.log import LOG
from ovos... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/media_provider.py | .py | 743f0b3a2119befa | 7.59 | 14 |
from ovos_config import Configuration
from ovos_utils.log import LOG, deprecated
import warnings
from ovos_plugin_manager.templates.microphone import Microphone
from ovos_plugin_manager.utils import PluginTypes
def find_microphone_plugins() -> dict:
"""
Find all installed plugins
@return: dict plugin name... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/microphone.py | .py | 3f65c338ab83f01a | 7.59 | 14 |
from ovos_plugin_manager.utils import PluginTypes
from ovos_plugin_manager.templates.ocp import OCPStreamExtractor
from ovos_utils.log import LOG
from functools import lru_cache
from ovos_plugin_manager.utils import find_plugins
try:
from ovos_plugin_manager.templates.media import AudioPlayerBackend, VideoPlayerB... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/ocp.py | .py | 2a81c7ace529fa81 | 7.59 | 14 |
from typing import Type, Dict, Any
from ovos_plugin_manager.templates.agent_tools import ToolBox
from ovos_plugin_manager.utils import PluginTypes
def find_persona_plugins() -> Dict[str, Dict[str, Any]]:
"""
Find all installed persona definitions
@return: dict plugin names to entrypoints (persona entrypo... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/persona.py | .py | f49850716faff685 | 7.59 | 14 |
from typing import Any, List, Optional, Union, Dict, Type
from ovos_bus_client.client import MessageBusClient
from ovos_config import Configuration
from ovos_utils.fakebus import FakeBus
from ovos_plugin_manager.templates.pipeline import ConfidenceMatcherPipeline, PipelinePlugin
from ovos_plugin_manager.utils import ... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/pipeline.py | .py | dccc8fb7c15c2d1d | 7.59 | 14 |
from typing import Optional, Type
from ovos_plugin_manager.tts import find_tts_plugins
from ovos_plugin_manager.stt import find_stt_plugins
from ovos_plugin_manager.wakewords import find_wake_word_plugins
from ovos_plugin_manager.audio import find_audio_service_plugins
from ovos_plugin_manager.utils import load_plugin... | OpenVoiceOS/ovos-plugin-manager | ovos_plugin_manager/plugin_entry.py | .py | 09e92978a7141f3a | 7.59 | 14 |
"""Copy a character to the test database."""
import os
from argparse import ArgumentParser
from typing import Any
from bson import ObjectId
from pymongo import MongoClient
type Character = dict[str, Any]
TEST_GUILD = 826628660450689074
TEST_USER = 229736753676681230
def fetch_char(char_id: ObjectId) -> Character:... | tiltowait/inconnu | scripts/copy-char.py | .py | 8ee3074f29ca4cef | 7.66 | 20 |
"""Export all characters from a guild."""
import json
import os
import sys
from argparse import ArgumentParser, ArgumentTypeError
from pathlib import Path
from typing import NamedTuple, Self
from pymongo import MongoClient
MONGO_ENV = "INCONNU_MONGO" # Change if necessary
MONGO_URL = os.getenv(MONGO_ENV)
class Ar... | tiltowait/inconnu | scripts/guild-export.py | .py | e7f6b37fa3c23386 | 7.66 | 20 |
"""The Inconnu API endpoints."""
import functools
import re
from datetime import datetime
from json import dumps
from urllib.parse import urljoin, urlparse
import aiohttp
import async_timeout
from loguru import logger
from config import settings
from models import VChar
# An argument can be made that these should s... | tiltowait/inconnu | src/api.py | .py | f9e72221453033a8 | 7.66 | 20 |
"""Pydantic-settings configuration; validated and loaded from .env or
INCONNU_CONFIG_FILE at startup."""
import os
from pydantic import AnyHttpUrl, field_validator
from pydantic_settings import BaseSettings, SettingsConfigDict
CONFIG_FILE = os.getenv("INCONNU_CONFIG_FILE", ".env")
class Settings(BaseSettings):
... | tiltowait/inconnu | src/config.py | .py | ec48959db0284ed0 | 7.66 | 20 |
"""AppCtx definitions."""
from typing import TYPE_CHECKING
import discord
if TYPE_CHECKING:
from discord.interactions import InteractionChannel
from bot import InconnuBot
Channel = InteractionChannel | None
else:
Channel = (
discord.abc.GuildChannel
| discord.abc.PrivateChannel
... | tiltowait/inconnu | src/ctx.py | .py | 56111038987f2c4e | 7.66 | 20 |
"""Shared database instance and collections."""
from typing import Any
from beanie import Document, init_beanie
from loguru import logger
from pymongo import AsyncMongoClient
from config import settings
from models import RPPost, VChar, VGuild, VUser
_client = AsyncMongoClient(settings.mongo_url, serverSelectionTim... | tiltowait/inconnu | src/db.py | .py | 4f1317a0d122fc4f | 7.66 | 20 |
"""character/bio.py - Create/edit/view character bios."""
import discord
from discord.ext import pages
from loguru import logger
import errors
import ui
from services.haven import haven
from utils.text import clean_text
__HELP_URL = "https://docs.inconnu.app/command-reference/characters/profiles#profile"
@haven(__... | tiltowait/inconnu | src/inconnu/character/bio.py | .py | 1c147366a54c0589 | 7.66 | 20 |
"""delete.py - Character deletion facilities."""
import asyncio
from typing import cast
import discord
from discord.ui import InputText, Modal
from loguru import logger
import api
import errors
import services
import ui
from ctx import AppCtx
__HELP_URL = "https://docs.inconnu.app/command-reference/characters/delet... | tiltowait/inconnu | src/inconnu/character/delete.py | .py | 59bbfa23c24737a5 | 7.66 | 20 |
"""character/display/display.py - Tools for displaying characters."""
from enum import StrEnum
from typing import Any
import discord
import services
import ui
from constants import Damage
from ctx import AppCtx
from inconnu.character.display import trackmoji
from models import VChar
from services.haven import haven
... | tiltowait/inconnu | src/inconnu/character/display/display.py | .py | f1a432cf2718cb2c | 7.66 | 20 |
"""character/display/trackmoji.py - A tool for converting a stress track to emoji."""
import services
def emojify_track(track: str) -> str:
"""Convert a stress track into an emoji string."""
emoji_track = []
for box in track:
emoji_track.append(__emojify_stressbox(box))
gaps = int((len(emoji... | tiltowait/inconnu | src/inconnu/character/display/trackmoji.py | .py | 4e391e8a7bd4bc4a | 7.66 | 20 |
"""Full-size character image display."""
import discord
from loguru import logger
import api
import db
import errors
import ui
from ctx import AppCtx
from models import VChar
from services.haven import haven
from ui.views import ReportingView
__HELP_URL = "https://docs.inconnu.app/guides/premium/character-images"
... | tiltowait/inconnu | src/inconnu/character/images/display.py | .py | b390b2ae9b6bb64d | 7.66 | 20 |
"""Character image uploading."""
from urllib.parse import urlparse
import discord
from loguru import logger
import api
import db
import ui
from ctx import AppCtx
from models import VChar
from services.haven import haven
__HELP_URL = "https://docs.inconnu.app/guides/premium/character-images"
VALID_EXTENSIONS = [".pn... | tiltowait/inconnu | src/inconnu/character/images/upload.py | .py | 648af117bbc0eb8d | 7.66 | 20 |
"""character/update/paramupdate.py - Functions for updating a character's non-trait parameters."""
from typing import cast
import inconnu
import services
from constants import Damage
from models import VChar
from models.vchar import Tracker
VALID_SPLATS = ["vampire", "ghoul", "mortal", "thinblood"]
async def updat... | tiltowait/inconnu | src/inconnu/character/update/paramupdate.py | .py | ceec3a3af5ad3048 | 7.66 | 20 |
"""character/update/parse.py - Defines an interface for updating character traits."""
import asyncio
from collections import OrderedDict
import discord
from discord.ui import Button
import constants
import inconnu
import services
import ui
from ctx import AppCtx
from inconnu.character.display import DisplayField, di... | tiltowait/inconnu | src/inconnu/character/update/parse.py | .py | 518b5f044015b59c | 7.66 | 20 |
"""experience/award_deduct.py - Award or deduct XP from a character."""
import asyncio
import discord
import ui
from ctx import AppCtx
from models import VChar
from services.haven import haven
from utils import get_avatar
__HELP_URL = "https://docs.inconnu.app/advanced/administration/experience-management"
@haven... | tiltowait/inconnu | src/inconnu/experience/award_deduct.py | .py | fccc607e0e12b10c | 7.66 | 20 |
"""experience/bulk.py - Bulk award XP."""
import asyncio
import re
import discord
from discord.ext.commands import Paginator
from discord.ui import InputText, Modal
import errors
import services
import ui
async def bulk_award_xp(ctx):
"""Present a modal for bulk-awarding XP."""
modal = _BulkModal(title="Bu... | tiltowait/inconnu | src/inconnu/experience/bulk.py | .py | 527f65a2c844f1df | 7.66 | 20 |
"""experience/remove.py - Remove an XP log entry."""
from typing import cast
import discord
import inconnu
import ui
from ctx import AppCtx
from models import VChar
from models.vchardocs import VCharExperienceEntry
from services.haven import haven
from ui.views import DisablingView
from utils import get_avatar
from ... | tiltowait/inconnu | src/inconnu/experience/remove.py | .py | fe9b371da44c08dc | 7.66 | 20 |
"""Header imports."""
from inconnu.header import posted
from inconnu.header.show import header_embed as embed
from inconnu.header.show import register_header as register
from inconnu.header.show import show_header
from inconnu.header.update import update_header
from models import VChar
__all__ = (
"blush_text",
... | tiltowait/inconnu | src/inconnu/header/__init__.py | .py | a406e62047203297 | 7.66 | 20 |
"""Edit location and temporary effects on a posted RP header."""
from typing import TYPE_CHECKING
import discord
from loguru import logger
import db
from ctx import AppCtx, Channel
if TYPE_CHECKING:
from bot import InconnuBot
async def edit_location(ctx: AppCtx, message: discord.Message):
"""Validate owne... | tiltowait/inconnu | src/inconnu/header/posted/location.py | .py | 4c0a788521ec5ec7 | 7.66 | 20 |
"""header/display.py - RP header display facilities."""
import discord
from loguru import logger
import db
import errors
import ui
from ctx import AppCtx
from models import VChar
from models.rpheader import HeaderSubdoc
from services.haven import haven
from utils import get_avatar
from utils.permissions import is_sup... | tiltowait/inconnu | src/inconnu/header/show.py | .py | b6aac11803b9b1da | 7.66 | 20 |
"""inconnu/headers/update.py - Update RP headers."""
import asyncio
import discord
from loguru import logger
import inconnu
from ctx import AppCtx
from models import VChar
from services.haven import haven
from utils.text import clean_text
__HELP_URL = "https://docs.inconnu.app/command-reference/characters/rp-header... | tiltowait/inconnu | src/inconnu/header/update.py | .py | 2640814af65ecd8f | 7.66 | 20 |
"""macros/roll.py - Rolling character macros."""
import re
from uuid import uuid4
import discord
from discord.ui import Button, View
from loguru import logger
import errors
import inconnu
import ui
from ctx import AppCtx
from inconnu.macros import macro_common
from inconnu.misc import rouse
from inconnu.vr import di... | tiltowait/inconnu | src/inconnu/macros/roll.py | .py | 95b238b806323c5b | 7.66 | 20 |
"""macros/show.py - Displaying character macros."""
from types import SimpleNamespace
import discord
from discord.ext import pages
import errors
import ui
from ctx import AppCtx
from models import VChar
from services.haven import haven
from utils import get_avatar
from utils.text import paginate
__HELP_URL = "https... | tiltowait/inconnu | src/inconnu/macros/show.py | .py | 326538bd76cd7d37 | 7.66 | 20 |
"""macros/update.py - Macro update commands."""
import errors
import inconnu
import ui
from ctx import AppCtx
from inconnu.macros import macro_common
from models import VChar
from services.haven import haven
from utils import parse_parameters
from utils.text import strtobool
__HELP_URL = "https://docs.inconnu.app/com... | tiltowait/inconnu | src/inconnu/macros/update.py | .py | 8c8880ff999f8857 | 7.66 | 20 |
"""misc/aggheal.py - Heal aggravated damage."""
from types import SimpleNamespace
import errors
import inconnu
import services
from constants import ROUSE_FAIL_COLOR, Damage
from models import VChar
from services.haven import haven
from utils import get_message
__HELP_URL = "https://docs.inconnu.app/guides/gameplay-... | tiltowait/inconnu | src/inconnu/misc/aggheal.py | .py | 877ed38966d0a6fe | 7.66 | 20 |
from django import forms
from django.db.models import Q
from subekashi.models import AuthorAlias
CONTACT_CATEGORY_CHOICES = [
("不具合の報告", "不具合の報告"),
("提案", "提案"),
("質問", "質問"),
("その他", "その他"),
]
class ContactForm(forms.Form):
category = forms.ChoiceField(
choices=CONTACT_CATEGORY_CHOICES,... | izumin2000/subekashi | subekashi/forms.py | .py | f33084e63bbb7813 | 7.65 | 19 |
from config.settings import ROOT_URL
def build_new_alias_discord_text(author, alias, editor):
"""別名新規追加用のDiscordテキストを構築する"""
return (
f"別名が追加されました\n"
f"{ROOT_URL}/authors/{author.id}/aliases\n\n"
f"**作者**：`{author.name}`\n"
f"**別名**：`{alias.name}`\n"
f"**種別**：`{alias.ge... | izumin2000/subekashi | subekashi/lib/author_alias_service.py | .py | 16cb15636c618e1c | 7.65 | 19 |
"""
Author関連のヘルパー関数
"""
from subekashi.models import Author, AuthorAlias
def _non_empty_names(author_names):
return [name for name in author_names if name] # 空文字列をスキップ
def get_or_create_authors(author_names):
"""
作者名のリストからAuthorオブジェクトのリストを返す
入力がalias_type="past"（以前の名称）のAuthorAlias.nameと完全一致する場合は、
... | izumin2000/subekashi | subekashi/lib/author_helpers.py | .py | d89543f6a81c707f | 7.65 | 19 |
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