text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
values | hash stringlengths 16 16 | score float64 7 8.5 | stars int64 0 237k |
|---|---|---|---|---|---|---|
"""
DAG pour supprimer tous les datasets de data.gouv.fr.
Ce DAG récupère tous les datasets de l'organisation sur data.gouv.fr
et les supprime.
"""
import pendulum
from include.container import DomainContainer as Container
from airflow.decorators import dag, task
@dag(
dag_id="archive_all_from_data_gouv",
... | MTES-MCT/sparte | airflow/dags/data_gouv/archive_all_from_data_gouv.py | .py | feb9d819ba45aea0 | 7.5 | 9 |
"""
Ce dag télécharge les données IGN Admin Express (format geopackage) et les importe
dans une base de données PostgreSQL via ogr2ogr.
Chaque zone est livrée dans une archive 7z contenant un unique fichier .gpkg
multi-couches. Les couches `commune`, `departement`, `epci` et `region` sont ingérées
chacune dans sa prop... | MTES-MCT/sparte | airflow/dags/ingest_admin_express.py | .py | 90e516146641ae15 | 7.5 | 9 |
"""
DAG pour ingérer le carroyage LEA de consommation d'espaces NAF.
Source: data.gouv.fr - Consommation d'espaces naturels, agricoles et forestiers
du 1er janvier 2011 au 1er janvier 2025 (ressource `conso_carroyage.gpkg`).
Le millésime 2025 est livré en **geopackage non archivé**, contrairement au millésime
2009-20... | MTES-MCT/sparte | airflow/dags/ingest_carroyage_lea.py | .py | 0fe24d5170df7ff0 | 7.5 | 9 |
from telegram import ReplyKeyboardMarkup
from telegram.constants import InlineKeyboardMarkupLimit
from droos_bot import CONFIG, DATA_COLUMNS
def create_keyboard( # noqa: PLR0913
items: list[str],
show_back: bool = True,
show_pagination: bool = True,
show_bullet: bool = True,
current_page: int = ... | yshalsager/droos_bot | droos_bot/utils/keyboards.py | .py | 03dc3de4a5c98fa3 | 7.64 | 18 |
"""Bot modules dynamic loader."""
import logging
from importlib import import_module
from pathlib import Path
logger = logging.getLogger(__name__)
def get_modules(modules_path: Path) -> filter:
"""Return all modules available in modules directory."""
return filter(
lambda x: x.name != "__init__.py" ... | yshalsager/droos_bot | droos_bot/utils/modules_loader.py | .py | 9cb70b0218277dd6 | 7.64 | 18 |
from ...model.browser.base.driver import BrowserDriver
from ...model.type.xpath import XPath
from ..get.element import get_element_without_wait
from ..wait.for_element import wait_for_element
def click_button(browser_driver: BrowserDriver, xpath: str, timeout: float) -> None:
xpath = XPath(xpath)
wait_for_ele... | jakob-bagterp/browserist | src/browserist/browser/click/button.py | .py | 1170bc008140058e | 7.64 | 18 |
from selenium.webdriver.common.by import By
from selenium.webdriver.remote.webelement import WebElement
from ...model.browser.base.driver import BrowserDriver
from ...model.type.xpath import XPath
from ..wait.for_element import wait_for_element
def get_element(browser_driver: BrowserDriver, xpath: str, timeout: floa... | jakob-bagterp/browserist | src/browserist/browser/get/element.py | .py | bcf8dffface93a65 | 7.64 | 18 |
from selenium.webdriver.common.by import By
from selenium.webdriver.remote.webelement import WebElement
from ...model.browser.base.driver import BrowserDriver
from ...model.type.xpath import XPath
from ..wait.for_element import wait_for_element
def get_elements(browser_driver: BrowserDriver, xpath: str, timeout: flo... | jakob-bagterp/browserist | src/browserist/browser/get/elements.py | .py | 04fc02da92c7e075 | 7.64 | 18 |
from .. import helper
from .elapsed_time_fractions import ElapsedTimeFractions
class TimeFractions:
__slots__ = ["time"]
def __init__(self, elapsed_time_ns: int) -> None:
self.time: ElapsedTimeFractions = helper.time_fractions.calculate_time_fractions(elapsed_time_ns)
def count_microseconds_to_f... | jakob-bagterp/timer-for-python | src/timer/model/time_fractions.py | .py | cb07917ac2454bb3 | 7.45 | 7 |
from enum import Enum, unique
@unique
class TimeUnit(Enum):
"""Time unit options for the Timer."""
NANOSECONDS = "nanoseconds"
MICROSECONDS = "microseconds"
MILLISECONDS = "milliseconds"
SECONDS = "seconds"
MINUTES = "minutes"
HOURS = "hours"
DAYS = "days"
def __str__(self) -> st... | jakob-bagterp/timer-for-python | test/_constant/time_unit.py | .py | cf2b2a2d2b5e7541 | 7.45 | 7 |
from random import choices, randint
from string import ascii_uppercase
from timer.constant.decimals import MAXIMUM, MINIMUM
def random_decimals(max: int = MAXIMUM) -> int:
"""Get a random number of decimals between the minimum 0 and maximum 9."""
return randint(MINIMUM, max if MINIMUM < max <= MAXIMUM else ... | jakob-bagterp/timer-for-python | test/_helper/random.py | .py | baaedbd18a9b0271 | 7.95 | 7 |
from timer import Timer
from timer.model.timer_base import TimerBase
def ensure_all_timer_threads_are_stopped() -> TimerBase:
"""Ensures all threads are stopped."""
timer = Timer()
timer._threads = []
return timer
def get_timer_with_invalid_thread_type(thread: str) -> TimerBase:
"""Get a Timer ... | jakob-bagterp/timer-for-python | test/_helper/timer.py | .py | 6e5562aaa809f972 | 7.95 | 7 |
from _mock_data.decimals import DECIMALS_RANGE
from timer import Timer
from timer.constant.decimals import DEFAULT
from timer.helper.decimals import mediate
# As decimals both can be set on the Timer object and the timer.start() function,
# let's ensure that decimals set in the timer.start() function takes precedence... | jakob-bagterp/timer-for-python | test/helper/decimals/mediate_test.py | .py | 213d76b0244e8fab | 7.95 | 7 |
# MIT License
# Copyright (c) 2021-2024 Openbitlab Team
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, ... | openbitlab/srvcheck | srvcheck/chains/chain.py | .py | 1f2ae18b9585112f | 7.56 | 12 |
# MIT License
# Copyright (c) 2021-2026 Openbitlab Team
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, ... | openbitlab/srvcheck | srvcheck/chains/octra.py | .py | 968d538e05bee60c | 7.56 | 12 |
# MIT License
# Copyright (c) 2021-2023 Openbitlab Team
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, ... | openbitlab/srvcheck | srvcheck/tasks/task.py | .py | bcbf9795e0d7bf87 | 7.56 | 12 |
# MIT License
# Copyright (c) 2021-2023 Openbitlab Team
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, ... | openbitlab/srvcheck | srvcheck/utils/system.py | .py | 591fa9cadcbaf246 | 7.56 | 12 |
# MIT License
# Copyright (c) 2021-2023 Openbitlab Team
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, ... | openbitlab/srvcheck | tests/mocks/mocknotification.py | .py | fe72688bf150caa8 | 7.06 | 12 |
# MIT License
# Copyright (c) 2021-2023 Openbitlab Team
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, ... | openbitlab/srvcheck | tests/notification_test.py | .py | 4f162f046c47bbd1 | 7.06 | 12 |
from django.core import mail
from django.test import override_settings, tag, TestCase
from django.urls import reverse
from .models import ContactMessage
@tag('contact', 'views')
@override_settings(SECURE_SSL_REDIRECT=False)
class TestContactMessageCreateView(TestCase):
@classmethod
def setUpTestData(cls):
... | Cmastris/django_photo_gallery | photo_gallery/contact/tests.py | .py | 7dea97752cb09fdd | 7.92 | 6 |
"""
Django settings - update as appropriate!
Review these settings and update them (via the corresponding environment
variables) to ensure they are appropriate for the app (e.g. localisation
settings) and environment (e.g. debug and security settings).
To emphasise: some setting values are not suitable for a live/pr... | Cmastris/django_photo_gallery | photo_gallery/photo_gallery/settings.py | .py | eeff10f466d6c262 | 7.42 | 6 |
from django.test import override_settings, tag, TestCase
from unittest.mock import patch
from .settings import get_bool_from_env, get_list_from_env
@tag('settings')
@override_settings(SECURE_SSL_REDIRECT=False)
class SettingsTests(TestCase):
@tag('get_list_from_env')
def test_get_list_from_env_empty(self):
... | Cmastris/django_photo_gallery | photo_gallery/photo_gallery/tests.py | .py | 7bdf3431e26364a6 | 7.92 | 6 |
import copy
from django.contrib import admin
from .models import Collection, Country, Photo
class CollectionAdmin(admin.ModelAdmin):
fields = ['name', 'description', 'slug', 'photo_count', 'published']
readonly_fields = ['photo_count']
list_display = ('name', 'slug', 'photo_count', 'published')
# Gen... | Cmastris/django_photo_gallery | photo_gallery/photos/admin.py | .py | e4b40cfebe3f0d52 | 7.42 | 6 |
"""Reusable platform and VTK version conditional skip markers."""
from __future__ import annotations
import os
import platform
import pytest
import pyvista
_MARKER_DEFINITIONS = (
("skip_egl(reason=...)", "skip the test when running with a headless OSMesa/EGL VTK build."),
(
"skip_linux(machine=None... | pyvista/pytest-pyvista | pytest_pyvista/_markers.py | .py | 7b8a1939a7765fff | 8.14 | 18 |
"""Autouse fixture that resets PyVista global state between tests."""
from __future__ import annotations
import contextlib
from typing import TYPE_CHECKING
from typing import Any
import pytest
import pyvista
if TYPE_CHECKING: # pragma: no cover
from collections.abc import Callable
from collections.abc impo... | pyvista/pytest-pyvista | pytest_pyvista/_reset_fixtures.py | .py | 2627294219080475 | 8.14 | 18 |
"""Functions users can hook into."""
from __future__ import annotations
from typing import TYPE_CHECKING
import pytest
if TYPE_CHECKING:
from .doc_mode import _DocVerifyImageCache
from .doc_mode import _VtkszFileSizeTestCase
@pytest.hookspec
def pytest_pyvista_doc_mode_hook(doc_verify_image_cache: _DocVer... | pyvista/pytest-pyvista | pytest_pyvista/hooks.py | .py | 31a4998f37c84abe | 7.14 | 18 |
from __future__ import annotations # noqa: D100
from typing import TYPE_CHECKING
import pytest
import pyvista as pv
if TYPE_CHECKING:
from collections.abc import Generator
pytest_plugins = "pytester"
# NOTE: close_all_plotters is no longer needed here because the plugin
# provides the _close_plotters_clear_t... | pyvista/pytest-pyvista | tests/conftest.py | .py | 56c7bed8194e10ed | 7.14 | 18 |
"""Test the --doc_mode option."""
from __future__ import annotations
import functools
import logging
import os
from pathlib import Path
import re
import subprocess
import sys
import pytest
import pyvista as pv
from pytest_pyvista import doc_mode
from pytest_pyvista.doc_mode import _DocVerifyImageCache
from pytest_p... | pyvista/pytest-pyvista | tests/test_doc_mode.py | .py | b4d4318d41528a3b | 7.14 | 18 |
"""Tests for the reusable platform and VTK version conditional skip markers."""
from __future__ import annotations
import platform
import pytest
import pyvista
from pyvista.plotting.utilities import gl_checks
def test_needs_vtk_version_skips_when_higher_required(pytester: pytest.Pytester, monkeypatch: pytest.Monke... | pyvista/pytest-pyvista | tests/test_markers.py | .py | 7dec6d3be388a030 | 7.14 | 18 |
"""Tests for the autouse fixture that resets PyVista global state."""
from __future__ import annotations
from typing import TYPE_CHECKING
from pytest_pyvista import _reset_fixtures
from pytest_pyvista._reset_fixtures import _capture_default
if TYPE_CHECKING:
import pytest
def test_reset_pyvista_state_restores... | pyvista/pytest-pyvista | tests/test_reset_fixtures.py | .py | c6c9d7ad096443a3 | 7.14 | 18 |
"""High-level interface to R3 repositories.
The `Repository` class should be imported not from this module but from the top-level
`r3` package.
"""
import os
from pathlib import Path
from typing import Any, Dict, Iterable, List, Set, Union
import yaml
from executor import execute
import r3
import r3.utils
from r3.i... | mtangemann/r3 | r3/repository.py | .py | db06102b5d7becd0 | 7.5 | 9 |
"""Storage component for R3 repositories."""
import os
import shutil
import stat
import tempfile
import uuid
import warnings
from datetime import datetime
from pathlib import Path
from typing import Any, Dict, Iterator, Optional, Union
import yaml
from executor import execute
import r3.utils
from r3.job import Depen... | mtangemann/r3 | r3/storage.py | .py | f2b1154e5ef38b7c | 7.5 | 9 |
"""Shared pytest fixtures for the R3 test suite."""
import pytest
@pytest.fixture(autouse=True)
def _isolated_git_identity(monkeypatch: pytest.MonkeyPatch) -> None:
"""Give every test a self-contained git identity, independent of the machine.
Also nulls ``GIT_CONFIG_GLOBAL``/``GIT_CONFIG_SYSTEM`` so machine... | mtangemann/r3 | test/conftest.py | .py | 86c492487d416878 | 7 | 9 |
"""Unit tests for the R3 command line interface."""
from pathlib import Path
from typing import List
import pytest
import yaml
from click.testing import CliRunner
from pytest_mock.plugin import MockerFixture
from r3.cli import cli
from r3.job import Job, JobDependency
from r3.repository import Repository
DATA_PATH ... | mtangemann/r3 | test/test_cli.py | .py | 897e2cec77f5e0a2 | 7 | 9 |
"""Tests for package version resolution."""
from pathlib import Path
import r3
VERSION_FILE = Path(__file__).parent.parent / "VERSION"
def test_version_matches_version_file() -> None:
"""In a source tree / editable install, ``__version__`` reflects VERSION live.
This is the path exercised by the CLI's ``-... | mtangemann/r3 | test/test_version.py | .py | 217f620cc9593235 | 7 | 9 |
"""MCP server for searching managed service notification logs."""
import json
import os
from pathlib import Path
from typing import Any, Dict, List
import chromadb
from chromadb.api.models.Collection import Collection
from fastmcp import FastMCP
from sentence_transformers import SentenceTransformer
class Notificati... | openshift/managed-notifications | mcp/main.py | .py | 9fa7c75ccf588cc5 | 7.57 | 13 |
"""Build embeddings for managed service notification logs."""
import json
import os
import re
from pathlib import Path
from typing import Any, Dict, List, Union, Mapping
import chromadb
from sentence_transformers import SentenceTransformer
def load_embedding_model() -> SentenceTransformer:
"""Load the sentence ... | openshift/managed-notifications | mcp/scripts/build_embeddings.py | .py | a3baf8926cc8dcd5 | 7.57 | 13 |
#!/usr/bin/env python
"""Downloads Vale if not downloaded yet and executes it."""
import os
import platform
import shutil
import subprocess
import sys
import tarfile
import tempfile
import zipfile
from functools import partial
from pathlib import Path
from typing import Optional, Tuple
from urllib.request import urlop... | daniperez/vale-python-package | vale/main.py | .py | 871d2558e0638450 | 7.5 | 9 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""File utilities for charmbuild: copying context, patching YAML, and moving build artefacts."""
import logging
import shutil
import yaml
from pathlib import Path
from typing import Optional
logger = logging.getLogger(__... | canonical/operator-workflows | charmbuild/src/files.py | .py | 0a2e272c839be4d7 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Entry point for charmbuild: wraps charmcraft with build-context support."""
import argparse
import logging
import os
import shutil
import subprocess
import sys
import tempfile
from pathlib import Path
from charmbuild.... | canonical/operator-workflows | charmbuild/src/main.py | .py | 49616e07e0d51764 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""A charm for tesing charm upload."""
from ops.charm import CharmBase
from ops.main import main
from ops.model import ActiveStatus
class TestUploadCharm(CharmBase):
"""Charm the service."""
def __init__(self,... | canonical/operator-workflows | tests/workflows/integration/test-alter-rock-name/src/charm.py | .py | e7f5634758fc822a | 8.04 | 11 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""A charm for tesing charm upload."""
import typing
from ops.charm import CharmBase
from ops.main import main
from ops.model import ActiveStatus
class TestUploadCharm(CharmBase):
"""Charm the service."""
def... | canonical/operator-workflows | tests/workflows/integration/test-upload-charm/src/charm.py | .py | 29f2da291b83f6bd | 8.04 | 11 |
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Unit tests."""
import unittest
class TestCharm(unittest.TestCase):
"""Unit tests."""
def test(self):
"""Test case."""
pass
| canonical/operator-workflows | tests/workflows/integration/test-upload-charm/tests/unit/test_charm.py | .py | fca6651b0525e8f7 | 7.04 | 11 |
import io
import sys
from collections.abc import Mapping
from typing import TYPE_CHECKING
import mdformat.renderer
import ruamel.yaml
from markdown_it import MarkdownIt
from mdit_py_plugins.front_matter import front_matter_plugin
if TYPE_CHECKING:
from mdformat.renderer import RenderContext, RenderTreeNode
fr... | butler54/mdformat-frontmatter | mdformat_frontmatter/plugin.py | .py | fc6aa045d5e39b02 | 7.63 | 17 |
import abc
import pathlib
import tempfile
import typing
from types import TracebackType
from jinja2 import Template
from pwhtmltopdf.pw import PlayWrightServer
from pwhtmltopdf.structures import PageParameters, PdfParameters
from pwhtmltopdf.types import StrPath, StrPathLike
class BaseHTP(abc.ABC):
def __init__... | vvanglro/pwhtmltopdf | pwhtmltopdf/abc.py | .py | 2e1a818a9adbc567 | 7.63 | 17 |
#!/usr/bin/env python3
"""Fetch the latest homeassistant tag and generate typing stubs for it."""
from __future__ import annotations
import argparse
import json
import logging
import os
from pathlib import Path
import shutil
import subprocess
import sys
import tempfile
import tomllib
from typing import TYPE_CHECKING
... | KapJI/homeassistant-stubs | update_stubs.py | .py | 6322357b00a8ce48 | 7.62 | 16 |
from __future__ import annotations
import os
import inspect
import logging
import datetime
import functools
from typing import (
TYPE_CHECKING,
Any,
Union,
Generic,
TypeVar,
Callable,
Iterator,
AsyncIterator,
cast,
overload,
)
from typing_extensions import Awaitable, ParamSpec, ... | Finch-API/finch-api-python | src/finch/_legacy_response.py | .py | a7771b83d9f95215 | 7.48 | 8 |
# Note: initially copied from https://github.com/florimondmanca/httpx-sse/blob/master/src/httpx_sse/_decoders.py
from __future__ import annotations
import json
import inspect
from types import TracebackType
from typing import TYPE_CHECKING, Any, Generic, TypeVar, Iterator, Optional, AsyncIterator, cast
from typing_ext... | Finch-API/finch-api-python | src/finch/_streaming.py | .py | bb4b3f21dfe5540a | 7.48 | 8 |
from __future__ import annotations
from os import PathLike
from typing import (
IO,
TYPE_CHECKING,
Any,
Dict,
List,
Type,
Tuple,
Union,
Mapping,
TypeVar,
Callable,
Iterable,
Iterator,
Optional,
Sequence,
AsyncIterable,
)
from typing_extensions import (
... | Finch-API/finch-api-python | src/finch/_types.py | .py | 4186e579bda055cf | 7.48 | 8 |
from __future__ import annotations
from typing import Any
from typing_extensions import override
from ._proxy import LazyProxy
class ResourcesProxy(LazyProxy[Any]):
"""A proxy for the `finch.resources` module.
This is used so that we can lazily import `finch.resources` only when
needed *and* so that us... | Finch-API/finch-api-python | src/finch/_utils/_resources_proxy.py | .py | 413908064826a539 | 7.48 | 8 |
"""Classes to handle alignments between template structure(s)
and target sequence(s).
To create an alignment, first declare a class for the given kind of
alignment by deriving from subclasses of :class:`AlignmentMode`
(e.g. :class:`Global`) and :class:`AlignmentType` (e.g. :class:`Pairwise`).
For exampl... | ihmwg/python-modelcif | modelcif/alignment.py | .py | 3a17d2a262b4ce28 | 7.59 | 14 |
"""Classes to associate extra files with the system.
Typically, one or more :class:`Repository` objects are created and
added to :attr:`modelcif.System.repositories`."""
import posixpath
import warnings
class Repository:
"""An online location where associated files can be found.
These objects are t... | ihmwg/python-modelcif | modelcif/associated.py | .py | 50da907346d00357 | 7.59 | 14 |
"""Classes to track inputs/outputs of modeling protocols.
See also :class:`modelcif.protocol.Step`.
"""
class Data:
"""Some part of the system that is input or output by part of
the modeling protocol, and/or stored in a file.
Usually a subclass is passed to :class:`modelcif.protocol.Step`
... | ihmwg/python-modelcif | modelcif/data.py | .py | 9e55fa43e16b3b94 | 7.59 | 14 |
"""Classes to describe the chemistry of custom chemical components.
If a given :class:`ihm.ChemComp` is not defined in either the wwPDB
chemical component dictionary (CCD) or the ModelArchive CCD, its
chemistry can be described with one or more of these objects. They
are passed as the ``descriptors`` argum... | ihmwg/python-modelcif | modelcif/descriptor.py | .py | 41cfc6898eb9acb5 | 7.59 | 14 |
import ihm.representation
from ihm.model import Atom, ModelGroup # noqa: F401
import modelcif.data
from ihm.util import _check_residue_range
# Provide ma-specific docs for Atom
Atom.__doc__ = """Coordinates of part of the model represented by an atom.
See :meth:`Model.get_atoms` for more details.
:param asym_unit:... | ihmwg/python-modelcif | modelcif/model.py | .py | 0a9ec30afcc9f60c | 7.59 | 14 |
"""Classes for handling modeling protocols.
"""
class Step:
"""A single step in a :class:`Protocol`.
This class describes a generic step in a modeling protocol. In most
cases, a more specific subclass should be used, such as
:class:`TemplateSearchStep`, :class:`ModelingStep`, or
:clas... | ihmwg/python-modelcif | modelcif/protocol.py | .py | 471c858fa86f2197 | 7.59 | 14 |
import modelcif
import modelcif.dumper
import modelcif.reader
import os
import unittest
class Tests(unittest.TestCase):
def test_basic(self):
"""Basic install test"""
system = modelcif.System(title='test system')
entity_a = modelcif.Entity('AAA', description='Subunit A')
entity_b ... | ihmwg/python-modelcif | modelcif/test.py | .py | e017652d02d76dbd | 8.09 | 14 |
import utils
import os
import unittest
TOPDIR = os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))
utils.set_search_paths(TOPDIR)
import modelcif.alignment
class Tests(unittest.TestCase):
def test_identity(self):
"""Test sequence identity classes"""
ident = modelcif.alignment.ShorterS... | ihmwg/python-modelcif | test/test_alignment.py | .py | 558904528cfd81b6 | 8.09 | 14 |
import utils
import os
import unittest
TOPDIR = os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))
utils.set_search_paths(TOPDIR)
import modelcif.associated
class Tests(unittest.TestCase):
def test_local_pairwise_qa_scores_file(self):
"""Test LocalPairwiseQAScoresFile class"""
self.as... | ihmwg/python-modelcif | test/test_associated.py | .py | 4f765308af80f5eb | 8.09 | 14 |
import utils
import os
import unittest
TOPDIR = os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))
utils.set_search_paths(TOPDIR)
import modelcif.descriptor
class Tests(unittest.TestCase):
def test_descriptor(self):
"""Test Descriptor classes"""
base = modelcif.descriptor.Descriptor("... | ihmwg/python-modelcif | test/test_descriptor.py | .py | 1de5ff39cbb92412 | 7.59 | 14 |
import utils
import os
import unittest
import io
TOPDIR = os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))
utils.set_search_paths(TOPDIR)
import modelcif.reader
import modelcif.dumper
class Tests(unittest.TestCase):
def test_model_with_assembly(self):
"""Test read of Model with Assembly fol... | ihmwg/python-modelcif | test/test_edit.py | .py | da892ecb7f6e92db | 7.09 | 14 |
import utils
import os
import unittest
TOPDIR = os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))
utils.set_search_paths(TOPDIR)
import modelcif.model
class Tests(unittest.TestCase):
def test_model(self):
"""Test Model classes"""
m = modelcif.model.HomologyModel([])
self.asse... | ihmwg/python-modelcif | test/test_model.py | .py | 001f58c9f47725ea | 8.09 | 14 |
import os
import unittest
import utils
TOPDIR = os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))
utils.set_search_paths(TOPDIR)
import modelcif.qa_metric
class Tests(unittest.TestCase):
def test_metric_types(self):
"""Test MetricType subclasses"""
self.assertEqual(modelcif.qa_metric... | ihmwg/python-modelcif | test/test_qa_metric.py | .py | 69428d6002df8d1e | 7.09 | 14 |
import utils
import os
import unittest
TOPDIR = os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))
utils.set_search_paths(TOPDIR)
import modelcif.reference
class Tests(unittest.TestCase):
def test_template_reference(self):
"""Test TemplateReference classes"""
ref = modelcif.reference.... | ihmwg/python-modelcif | test/test_reference.py | .py | 732e87ab3c65b66d | 7.09 | 14 |
import os
import sys
import tempfile
import contextlib
import shutil
def set_search_paths(topdir):
"""Set search paths so that we can import Python modules"""
os.environ['PYTHONPATH'] = topdir + os.pathsep \
+ os.environ.get('PYTHONPATH', '')
sys.path.insert(0, topdir)
def get_input_file_name(to... | ihmwg/python-modelcif | test/utils.py | .py | fe9fc7152972af52 | 8.09 | 14 |
import unittest
import modelcif.reader
import modelcif.dumper
import urllib.request
import os
class Tests(unittest.TestCase):
def _read_cif(self, url):
with urllib.request.urlopen(url) as fh:
s, = modelcif.reader.read(fh)
return s
def _write_cif(self, s, check=True):
with ... | ihmwg/python-modelcif | util/check-db-entries.py | .py | ceae66f511e20ca4 | 7.59 | 14 |
#!/usr/bin/python
import os
import pathlib
import re
from pathlib import Path
import terraformDocGoMod
import terraformDocsUtils
# Check if a line is a heading
def get_title(
line: str, code_block: bool, comment_block: bool
) -> tuple[int, str, bool, bool]:
level = 0
for c in line:
# set a flag ... | terraform-ibm-modules/common-dev-assets | module-assets/ci/terraformDocOverview.py | .py | 728ed83f0b73bc5f | 7.48 | 8 |
import json
import logging
import os
import shutil
import numpy as np
import scipy.misc
try:
from StringIO import StringIO # Python 2.7
except ImportError:
from io import BytesIO # Python 3.x
import torch
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
class Params():
"""... | chto/linna | linna/nnutils.py | .py | 1a989796cac8da49 | 7.45 | 7 |
"""The Protocol base class and the decode contract shared by all headers.
Decode contract
---------------
``decode(data)`` receives the *entire remaining buffer* — everything from
the start of this protocol's header to the end of the captured frame —
and must:
1. Parse the fixed portion with the class-level ``struct.... | EONRaider/NETProtocols | src/netprotocols/_base.py | .py | 9d8f3b481873574a | 7.54 | 11 |
"""Protocol number registries.
This module is intentionally dependency-free: it must never import from
the layer modules, so that any protocol class can import an enum from
here without creating an import cycle.
"""
from enum import IntEnum
__all__ = ["ARPHardwareType", "ARPOperation", "EtherType", "IPProtocol"]
c... | EONRaider/NETProtocols | src/netprotocols/_enums.py | .py | 0c2274d1f39e70c6 | 7.54 | 11 |
"""ARP packet header (RFC 826)."""
from __future__ import annotations
from dataclasses import dataclass
from struct import Struct
from typing import ClassVar, Self
from netprotocols._base import (
Protocol,
bytes_to_ipv4,
bytes_to_mac,
ipv4_to_bytes,
mac_to_bytes,
)
from netprotocols._enums impor... | EONRaider/NETProtocols | src/netprotocols/layer2/arp.py | .py | 09ea96fcc79770c0 | 7.54 | 11 |
"""Ethernet II frame header (IEEE 802.3)."""
from __future__ import annotations
from dataclasses import dataclass
from struct import Struct
from typing import ClassVar, Self
from netprotocols._base import Protocol, bytes_to_mac, mac_to_bytes
from netprotocols._enums import EtherType
from netprotocols.utils.mac impor... | EONRaider/NETProtocols | src/netprotocols/layer2/ethernet.py | .py | ef1845df2799291f | 7.54 | 11 |
"""ICMPv4 (RFC 792) and ICMPv6 (RFC 4443) headers.
Both classes model the 8-byte header common to all control messages:
type, code, checksum, and the message-specific final 4 bytes (the
"rest of header" in ICMPv4, the start of the message body in ICMPv6).
Message-specific payloads beyond those 8 bytes are left to the ... | EONRaider/NETProtocols | src/netprotocols/layer3/icmp.py | .py | 586b472bfdb7f8a4 | 7.54 | 11 |
"""UDP datagram header (RFC 768)."""
from __future__ import annotations
from dataclasses import dataclass
from struct import Struct
from typing import ClassVar, Self
from netprotocols._base import Protocol
__all__ = ["UDP"]
@dataclass(frozen=True, slots=True)
class UDP(Protocol):
"""A UDP header.
:param ... | EONRaider/NETProtocols | src/netprotocols/layer4/udp.py | .py | 7b2b640dc1ef2489 | 7.54 | 11 |
"""Composition of protocol headers into a serializable packet."""
from __future__ import annotations
from netprotocols._base import Protocol
from netprotocols.utils.exceptions import InvalidFieldError
__all__ = ["Packet"]
class Packet:
"""An ordered stack of protocol headers, outermost first.
>>> packet =... | EONRaider/NETProtocols | src/netprotocols/packet.py | .py | 999bbe334210f0fb | 7.54 | 11 |
"""Exception hierarchy for netprotocols.
Every exception raised by this library derives from :class:`ProtocolError`,
so callers can guard an entire decode pipeline with a single handler.
"""
__all__ = [
"InvalidFieldError",
"InvalidIPv4AddressError",
"InvalidMACAddressError",
"InvalidManufacturerCodeE... | EONRaider/NETProtocols | src/netprotocols/utils/exceptions.py | .py | 937acd6187749a70 | 7.54 | 11 |
"""MAC address validation and generation."""
import re
import string
from random import choices
from netprotocols.utils.exceptions import (
InvalidMACAddressError,
InvalidManufacturerCodeError,
)
__all__ = ["mac_regex", "random_mac", "validate_mac_addr"]
mac_regex = re.compile(
r"^(?P<oui>([\dA-F]{2}[:-... | EONRaider/NETProtocols | src/netprotocols/utils/mac.py | .py | ba901da433c291b8 | 7.54 | 11 |
"""Shared fixtures: real header bytes from captured traffic.
Sources include the Wireshark sample captures at
https://wiki.wireshark.org/SampleCaptures (arp-storm.pcap, among
others) and locally captured frames.
"""
import pytest
@pytest.fixture
def raw_eth_header() -> bytes:
"""Ethernet II header of a broadcas... | EONRaider/NETProtocols | tests/conftest.py | .py | dae8991fb778c696 | 7.04 | 11 |
"""Helper script to convert all .puml/.plantuml files stored under docs/diagrams into images."""
from __future__ import annotations
from itertools import chain
from pathlib import Path
from typing import Dict
import plantuml
from sphinx.application import Sphinx
from sphinx.util import logging
logger = logging.getL... | DudeNr33/gherlint | docs/exts/convert_plantuml.py | .py | 4e4b8ae46a90a51f | 7.45 | 7 |
"""
``gherlint`` is a linter for Cucumber Gherkin feature files.
"""
from pathlib import Path
import click
from gherlint.fixer import LanguageFixer
from gherlint.linter import GherkinLinter
from gherlint.statistics import compute_metrics
@click.group(
context_settings={"help_option_names": ["-h", "--help"]},
... | DudeNr33/gherlint | src/gherlint/__main__.py | .py | 65e8b4f96b12d25e | 7.45 | 7 |
"""
Checker focussing of completeness of feature files, e. g. that every scenario must have a name,
every parameter that is used in a scenario outline has to be defined in the examples, etc.
"""
from typing import Set, Union
from gherlint.checkers.base_checker import BaseChecker
from gherlint.exceptions import Intern... | DudeNr33/gherlint | src/gherlint/checkers/completeness.py | .py | 04b26bc93dcc5b1d | 7.45 | 7 |
from __future__ import annotations
from typing import TYPE_CHECKING, Optional
if TYPE_CHECKING:
from gherlint.objectmodel import nodes
class GherlintException(Exception):
"""Base class for all custom exceptions issued by Gherlint"""
class InternalError(GherlintException):
"""Intended to be used in pla... | DudeNr33/gherlint | src/gherlint/exceptions.py | .py | a8ef6ba30040c371 | 7.45 | 7 |
"""Options and options handling for checkers of other classes."""
from __future__ import annotations
from typing import ClassVar
from pydantic import BaseModel, Field # pylint: disable=no-name-in-module
from gherlint.config import Config
class Options(BaseModel):
"""Options for a checker."""
config_sect... | DudeNr33/gherlint | src/gherlint/options.py | .py | fd78393fb9db9533 | 7.45 | 7 |
from typing import List
from gherlint.checkers.base_checker import BaseChecker
from gherlint.objectmodel.nodes import Node
class ASTWalker:
"""
A class which walks through the inidvidual notes of an abstract syntax tree
representing a Gherkin feature file and calls the callbacks.
"""
def __init_... | DudeNr33/gherlint | src/gherlint/walker.py | .py | b806abdd997cab90 | 7.45 | 7 |
from contextlib import contextmanager
from pathlib import Path
from typing import Optional
import pytest
from gherlint.config import Config
from gherlint.linter import GherkinLinter
feature_files = list(Path(__file__).parent.rglob("*.feature"))
result_files = [file.parent / (file.stem + ".txt") for file in feature_f... | DudeNr33/gherlint | tests/functional/test_functional.py | .py | 43012784f26eb65f | 7.95 | 7 |
from pathlib import Path
import pytest
from gherlint.fixer import LanguageFixer
class TestLanguageFixer:
GOOD_FILE = "good_file.feature"
MISSING_TAG = "missing_tag.feature"
WRONG_TAG = "wrong_tag.feature"
@pytest.fixture()
def testfiles(self, tmpdir):
"""Set up some files to test with i... | DudeNr33/gherlint | tests/unittests/test_fixer.py | .py | 1530994eed25fa17 | 7.95 | 7 |
#!/usr/bin/env python3
import math
from collections.abc import Sequence
from pathlib import Path
import numpy as np
import numpy.typing as npt
from pynonthermal.constants import CLIGHT
from pynonthermal.constants import EV
from pynonthermal.constants import H
from pynonthermal.constants import ME
from pynonthermal.co... | lukeshingles/pynonthermal | pynonthermal/base.py | .py | 7ca3115cff2b7e8a | 7.42 | 6 |
from functools import lru_cache
from pathlib import Path
import numpy as np
import numpy.typing as npt
import polars as pl
import pynonthermal
from pynonthermal.axelrod import get_binding_energies
from pynonthermal.axelrod import get_lotz_xs_ionisation_vec
from pynonthermal.axelrod import get_shell_configs
from pynon... | lukeshingles/pynonthermal | pynonthermal/collion.py | .py | 6d96e4deeddb6764 | 7.42 | 6 |
import math
import warnings
from pathlib import Path
import numpy as np
import polars as pl
import pytest
import pynonthermal
pytestmark = pytest.mark.benchmark
outputfolder = Path(__file__).absolute().parent / "output"
def test_lotz_heavy_element() -> None:
# elements heavier than Ni (Z>28) use the Axelrod 19... | lukeshingles/pynonthermal | pynonthermal/tests/test_sfsolve.py | .py | 9aa7464118eea9a3 | 7.92 | 6 |
#!/usr/bin/env python3
"""
Generate expected entity state events and relationships JSON files from ClickHouse data.
This script connects to ClickHouse (via port-forward) and generates JSON files
for integration test assertions. It automatically discovers all entity types and
relationship types in the database.
Prereq... | solarwinds/swi-k8s-opentelemetry-collector | tests/integration/generate_relationships.py | .py | 7b63508d7428c578 | 7.95 | 7 |
import json
import os
import time
from typing import Dict, Iterable, List
import pytest
from clickhouse_client import ClickHouseClient
from test_utils import (
get_attribute_key_and_value,
parse_value,
)
EXPECTED_DIR = os.path.join(
os.path.dirname(__file__), "expected_entitystateevents"
)
# Cache for e... | solarwinds/swi-k8s-opentelemetry-collector | tests/integration/test_entity_state_events_snapshot.py | .py | da5fb2a63fe1034d | 7.95 | 7 |
import os
from time import sleep
import pytest
from test_utils import retry_until_ok_clickhouse
from clickhouse_client import ClickHouseClient
clickhouse_endpoint = os.getenv("CLICKHOUSE_ENDPOINT", "localhost:8123")
clickhouse_client = ClickHouseClient(clickhouse_endpoint)
ignored_namespace = "test-namespace-ignore"
... | solarwinds/swi-k8s-opentelemetry-collector | tests/integration/test_namespace_exclusion.py | .py | 0bded698777ed623 | 7.95 | 7 |
import json
import os
from test_utils import retry_until_ok_clickhouse
from clickhouse_client import ClickHouseClient
clickhouse_endpoint = os.getenv("CLICKHOUSE_ENDPOINT", "localhost:8123")
clickhouse_client = ClickHouseClient(clickhouse_endpoint)
SERVICE_NAME = "trace-gen-test-service"
timeout = int(os.getenv("TEST... | solarwinds/swi-k8s-opentelemetry-collector | tests/integration/test_trace_collection.py | .py | 81a4b916657f3507 | 7.95 | 7 |
#!/usr/bin/env python3
# coding: utf-8
"""
Read a Cellebrite email export parse it and export it out.
"""
# <<<<<<<<<<<<<<<<<<<<<<<<<< Imports >>>>>>>>>>>>>>>>>>>>>>>>>>
import os
import re
import sys
import argparse
import openpyxl
from datetime import datetime
from openpyxl import load_workbook, Workboo... | LincolnLandForensics/HodgePodge | Cellebrite_Parser/CellebriteEmailxlsx2xlsx.py | .py | 054e4e35c53a1ddd | 7.62 | 16 |
#!/usr/bin/env python3
# coding: utf-8
"""
Read a case sheet and re-organize the order of the headers
It will read the first sheet
just change the order of headers on line 127
"""
# <<<<<<<<<<<<<<<<<<<<<<<<<< Imports >>>>>>>>>>>>>>>>>>>>>>>>>>
import os
import sys
import argparse
import openpyxl
from open... | LincolnLandForensics/HodgePodge | ForensicsReporter/Spreadsheet_reorder.py | .py | 50d4f7fcc2a3898f | 7.62 | 16 |
#!/usr/bin/env python3
# coding: utf-8
"""
Parse (Garmin) GPX files and write results to Excel.
Author: LincolnLandForensics
Version: 1.0.0
"""
# <<<<<<<<<<<<<<<<<<<<<<<<<< Imports >>>>>>>>>>>>>>>>>>>>>>>>>>
import os
import re
import sys
import zipfile
import argparse
import gpxpy # pip install gpxpy
... | LincolnLandForensics/HodgePodge | GPS2Address/GPX2XLSX.py | .py | 2840f94b2e32c42f | 7.62 | 16 |
import os
import re
import sys
import argparse
import threading
import queue
import tkinter as tk
from tkinter import ttk, filedialog, scrolledtext
from typing import List, Dict
from datetime import datetime
from openpyxl import load_workbook
# <<<<<<<<<<<<<<<<<<<<<<<<<< Pre-Sets >>>>>>>>>>>>>>>>>>>>>>>>>>
... | LincolnLandForensics/HodgePodge | MarkdownMaker/xlsx2markdown.py | .py | eb95e1ddd68b815c | 7.62 | 16 |
#!/usr/bin/env python3
# coding: utf-8
"""
Read .docx, .txt, or .pdf files and analyze if they were written by AI
Author: LincolnLandForensics
Version: 0.0.3
"""
# <<<<<<<<<<<<<<<<<<<<<<<<<< Imports >>>>>>>>>>>>>>>>>>>>>>>>>> #
import os
import re
import sys
import math
import hashlib
import argparse
imp... | LincolnLandForensics/HodgePodge | Misc/AI_Analyze.py | .py | a966def138b27565 | 7.62 | 16 |
import tkinter as tk
from tkinter import filedialog, ttk, messagebox
import os
import re
from datetime import datetime
from openpyxl import load_workbook
from openpyxl.utils import get_column_letter
from bs4 import BeautifulSoup
# --- Configuration ---
VERSION = "1.2"
# Final set of headers
HEADERS = ["Date", "Tes... | LincolnLandForensics/HodgePodge | Misc/WriteBlocker_parser.py | .py | 02a830900ce7d7a7 | 7.62 | 16 |
import os
import threading
import tkinter as tk
from tkinter import ttk, filedialog
from PIL import Image
import pillow_heif
# CRITICAL FIX: Globally disable all metadata, EXIF, and XMP parsing
# This forces libheif to completely skip reading the broken metadata blocks.
pillow_heif.options.HEIF_THUMBNAILS = False
pil... | LincolnLandForensics/HodgePodge | Misc/heic2jpg.py | .py | 113dc2493a50b0e2 | 7.62 | 16 |
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