text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
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"""Component manager for centralized component lifecycle management"""
import logging
from typing import Any, Dict, List, Optional
from . import ApiVersions, Systems
from .component_factory import ComponentFactory
from .exceptions import ComponentInitializationError
from .modbus_wrapper import ModbusConnector
class... | LavermanJJ/pysolarfocus | src/pysolarfocus/component_manager.py | .py | 79d9f79ec3fab5f7 | 7.52 | 10 |
"""Solarfocus abstract component"""
import logging
from typing import List, Optional, Tuple
from ...modbus_wrapper import ModbusConnector
from .data_value import DataValue
from .enums import DataTypes, RegisterTypes
from .performance_calculator import PerformanceCalculator
from .register_slice import RegisterSlice
c... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/base/component.py | .py | 4991c487f3352f78 | 7.52 | 10 |
"""Solarfocus data value"""
import logging
from typing import Optional, Union
from ...modbus_wrapper import ModbusConnector
from .enums import DataTypes, RegisterTypes
from .part import Part
class DataValue(Part):
"""
Abstraction of a certain relative address in the modbus register with validation and error... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/base/data_value.py | .py | b98149a9cffb266f | 7.52 | 10 |
"""Solarfocus performance calculator"""
from .part import Part
class PerformanceCalculator(Part):
"""
Performing performance calculations
"""
nominator: Part
denominator: Part
value: int = None
def __init__(self, nominator: Part, denominator: Part) -> None:
self.nominator = nomi... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/base/performance_calculator.py | .py | 17a4a4915b001213 | 7.52 | 10 |
"""Solarfocus pelletsboiler component"""
from .. import ApiVersions, Systems
from .base.component import Component
from .base.data_value import DataValue
from .base.enums import DataTypes, RegisterTypes
class BiomassBoiler(Component):
def __init__(self, input_address=2400, holding_address=-1, api_version: ApiVer... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/biomass_boiler.py | .py | 693db22b91da0585 | 7.52 | 10 |
"""Solarfocus boiler component"""
from .. import ApiVersions
from .base.component import Component
from .base.data_value import DataValue
from .base.enums import DataTypes, RegisterTypes
class Boiler(Component):
def __init__(self, input_address: int = 500, holding_address: int = 32000, api_version: ApiVersions = ... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/boiler.py | .py | b464d2fdee36273c | 7.52 | 10 |
"""Solarfocus circulation component"""
from .. import ApiVersions
from .base.component import Component
from .base.data_value import DataValue
class Circulation(Component):
def __init__(self, input_address=900, api_version: ApiVersions = ApiVersions.V_25_030) -> None:
super().__init__(input_address)
... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/circulation.py | .py | 708e6bc2753200f2 | 7.02 | 10 |
"""Solarfocus differential module component"""
from .. import ApiVersions
from .base.component import Component
from .base.data_value import DataValue
from .base.enums import DataTypes
class DifferentialModule(Component):
def __init__(self, input_address=2200, api_version: ApiVersions = ApiVersions.V_25_030) -> N... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/differential_module.py | .py | 8fa2ecce057ad4f4 | 7.52 | 10 |
"""Solarfocus fresh water module component"""
from .. import ApiVersions
from .base.component import Component
from .base.data_value import DataValue
class FreshWaterModule(Component):
def __init__(self, input_address=700, api_version: ApiVersions = ApiVersions.V_23_020) -> None:
super().__init__(input_ad... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/fresh_water_module.py | .py | 45eddb4438780c65 | 7.52 | 10 |
"""Solarfocus heating circuit component"""
from .. import ApiVersions
from .base.component import Component
from .base.data_value import DataValue
from .base.enums import DataTypes, RegisterTypes
class HeatingCircuit(Component):
def __init__(self, input_address=1100, holding_address=32600, api_version: ApiVersion... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/heating_circuit.py | .py | f3f38f4b4fae46fb | 7.52 | 10 |
"""Solarfocus photovoltaic component"""
from .. import ApiVersions
from .base.component import Component
from .base.data_value import DataValue
from .base.enums import RegisterTypes
class Photovoltaic(Component):
def __init__(self, api_version: ApiVersions = ApiVersions.V_21_140) -> None:
super().__init__... | LavermanJJ/pysolarfocus | src/pysolarfocus/components/photovoltaic.py | .py | da65537d5a070248 | 7.52 | 10 |
"""Configuration validation utilities for pysolarfocus"""
from .exceptions import InvalidConfigurationError
class ConfigValidator:
"""Validates configuration parameters for pysolarfocus components."""
# Component count limits
COMPONENT_LIMITS = {
"heating_circuit": (0, 8),
"buffer": (0, ... | LavermanJJ/pysolarfocus | src/pysolarfocus/config_validator.py | .py | da8d61399be40231 | 7.52 | 10 |
"""Constants for pysolarfocs"""
from enum import IntEnum
class HeatingCircuitMode(IntEnum):
"""Heating circuit modes."""
ALWAYS_ON = 0
REDUCED_OPERATION = 1
AUTOMATIC = 2
OFF = 3
class HeatingCircuitCooling(IntEnum):
"""Heating circuit cooling"""
HEATING = 0
COOLING = 1
class H... | LavermanJJ/pysolarfocus | src/pysolarfocus/const.py | .py | cdbf56cc6e853fd3 | 7.52 | 10 |
"""Logging configuration for pysolarfocus"""
import logging
import sys
from typing import Optional
def setup_logging(level: int = logging.INFO, format_string: Optional[str] = None, filename: Optional[str] = None) -> None:
"""Setup logging configuration for pysolarfocus.
Args:
level: Logging level (d... | LavermanJJ/pysolarfocus | src/pysolarfocus/logging_config.py | .py | 88c58b71416d079d | 7.52 | 10 |
"""Solarfocus modbus wrapper"""
import logging
import time
from typing import List, Optional, Tuple
try:
# modbus version < 3.0
from pymodbus.client.sync import ModbusTcpClient as ModbusClient
IS_LEGACY_VERSION = True
IS_VERSION_3_10 = False
except ImportError:
from pymodbus.client import ModbusT... | LavermanJJ/pysolarfocus | src/pysolarfocus/modbus_wrapper.py | .py | 302fa5b97ad43f03 | 7.52 | 10 |
"""Tests for base Component class"""
import unittest.mock as mock
from unittest.mock import MagicMock
import pytest
from pysolarfocus.components.base.component import Component
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.base.enums import RegisterTypes
from pysolarfocus.... | LavermanJJ/pysolarfocus | tests/test_base_component.py | .py | 3f89ea9d27141a54 | 7.02 | 10 |
"""Tests for biomass boiler component"""
from contextlib import contextmanager
import unittest.mock as mock
from unittest.mock import MagicMock
import pytest
from pysolarfocus import ApiVersions, Systems
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.base.enums import DataT... | LavermanJJ/pysolarfocus | tests/test_biomass_boiler.py | .py | 6638189413ed451b | 8.02 | 10 |
"""Tests for boiler component"""
from pysolarfocus import ApiVersions
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.boiler import Boiler
from pysolarfocus.const import DomesticHotWaterMode
def test_boiler_data_values():
"""Test data values for boiler component"""
... | LavermanJJ/pysolarfocus | tests/test_boiler.py | .py | a3b908a88dcd91ad | 8.02 | 10 |
"""Tests for buffer component"""
from pysolarfocus import ApiVersions
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.buffer import Buffer
def test_buffer_data_values():
"""Test data values for buffer component"""
buffer = Buffer(api_version=ApiVersions.V_25_030)
... | LavermanJJ/pysolarfocus | tests/test_buffer.py | .py | fc00a957f9651f59 | 8.02 | 10 |
"""Tests for circulation component"""
from pysolarfocus import ApiVersions
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.circulation import Circulation
def test_circulation_data_values():
"""Test data values for circulation component"""
circulation = Circulation(a... | LavermanJJ/pysolarfocus | tests/test_circulation.py | .py | 0300c588815bfffb | 8.02 | 10 |
"""Tests for ComponentFactory"""
import unittest.mock as mock
from unittest.mock import MagicMock
from pysolarfocus import ApiVersions, Systems
from pysolarfocus.component_factory import ComponentFactory
from pysolarfocus.modbus_wrapper import ModbusConnector
def test_component_factory_init():
"""Test ComponentF... | LavermanJJ/pysolarfocus | tests/test_component_factory.py | .py | eea53095257aea97 | 7.02 | 10 |
"""Tests for pysolarfocus core functionality"""
from unittest.mock import MagicMock, patch
from pysolarfocus import (
ApiVersions,
DomesticHotWaterMode,
HeatingCircuitCooling,
HeatingCircuitMode,
HeatPumpSgReadyMode,
InvalidConfigurationError,
SolarfocusAPI,
Systems,
)
def test_syste... | LavermanJJ/pysolarfocus | tests/test_core.py | .py | 236f415512616566 | 8.02 | 10 |
"""Tests for DataValue class"""
import unittest.mock as mock
from unittest.mock import MagicMock
import pytest
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.base.enums import DataTypes, RegisterTypes
from pysolarfocus.modbus_wrapper import ModbusConnector
def test_data_v... | LavermanJJ/pysolarfocus | tests/test_data_value.py | .py | 3aef758fadcf2ec5 | 8.02 | 10 |
"""Tests for differential module component"""
from pysolarfocus import ApiVersions
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.base.enums import DataTypes
from pysolarfocus.components.differential_module import DifferentialModule
def test_differential_module_data_values... | LavermanJJ/pysolarfocus | tests/test_differential_module.py | .py | 9355480228c012a2 | 8.02 | 10 |
"""Tests for fresh water module component"""
from pysolarfocus import ApiVersions
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.fresh_water_module import FreshWaterModule
def test_fresh_water_module_data_values():
"""Test data values for fresh water module component""... | LavermanJJ/pysolarfocus | tests/test_fresh_water_module.py | .py | 76d2a90170b14f4f | 8.02 | 10 |
"""Tests for fresh water module cascade and circulation module components"""
from pysolarfocus import ApiVersions
from pysolarfocus.components.fresh_water_module import (
CirculationModule,
FreshWaterModule,
FreshWaterModuleCascade,
)
class TestFreshWaterModuleCascade:
"""Test FreshWaterModuleCascade... | LavermanJJ/pysolarfocus | tests/test_fresh_water_module_extended.py | .py | be68dba3ace2bba6 | 8.02 | 10 |
"""Tests for heat pump component"""
from pysolarfocus import ApiVersions
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.heat_pump import HeatPump
def test_heat_pump_data_values_v21():
"""Test data values for API version 21.140"""
hp = HeatPump(api_version=ApiVersio... | LavermanJJ/pysolarfocus | tests/test_heat_pump.py | .py | 1390cd84bc85c74c | 8.02 | 10 |
"""Tests for heating circuit component"""
from unittest.mock import MagicMock
from pysolarfocus import ApiVersions
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.heating_circuit import HeatingCircuit
from pysolarfocus.const import HeatingCircuitCooling, HeatingCircuitMode
... | LavermanJJ/pysolarfocus | tests/test_heating_circuit.py | .py | 24f36cd8bb41c075 | 8.02 | 10 |
"""Tests for modbus wrapper"""
import unittest.mock as mock
from unittest.mock import MagicMock
from pysolarfocus.components.base.register_slice import RegisterSlice
from pysolarfocus.modbus_wrapper import ModbusConnector
def test_modbus_connector_init():
"""Test ModbusConnector initialization"""
conn = Modb... | LavermanJJ/pysolarfocus | tests/test_modbus_wrapper.py | .py | ac1be0ad58b4bfb7 | 7.02 | 10 |
"""Tests for PerformanceCalculator"""
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.base.performance_calculator import PerformanceCalculator
def test_performance_calculator_init():
"""Test PerformanceCalculator initialization"""
data1 = DataValue(address=0)
da... | LavermanJJ/pysolarfocus | tests/test_performance_calculator.py | .py | 638334b550a6efb5 | 7.02 | 10 |
"""Tests for photovoltaic component"""
from unittest.mock import MagicMock
from pysolarfocus import ApiVersions
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.base.enums import RegisterTypes
from pysolarfocus.components.photovoltaic import Photovoltaic
def test_photovolta... | LavermanJJ/pysolarfocus | tests/test_photovoltaic.py | .py | 7fa90f8b99378853 | 8.02 | 10 |
"""Tests for solar component"""
from pysolarfocus import ApiVersions
from pysolarfocus.components.base.data_value import DataValue
from pysolarfocus.components.solar import Solar
def test_solar_data_values():
"""Test data values for solar component"""
solar = Solar(api_version=ApiVersions.V_25_030)
# Ch... | LavermanJJ/pysolarfocus | tests/test_solar.py | .py | 4b682005cafe0691 | 8.02 | 10 |
"""Extended tests for SolarfocusAPI class"""
import unittest.mock as mock
from unittest.mock import MagicMock, patch
import pytest
from pysolarfocus import (
ApiVersions,
DomesticHotWaterMode,
HeatingCircuitCooling,
HeatingCircuitHeatingMode,
HeatingCircuitMode,
HeatPumpSgReadyMode,
Solarf... | LavermanJJ/pysolarfocus | tests/test_solarfocus_api_extended.py | .py | 5d0517cf1278460b | 8.02 | 10 |
"""Command-line interface"""
import argparse
import logging
import pathlib
import sys
import textwrap
from . import VERSION, ConfigurationError, InvocationError, RunError, log
from .config import get_config
from .controller import get_controller
_logger = logging.getLogger(__name__)
_config_guesses = [
p / "etc... | ecmwf/troika | src/troika/cli.py | .py | c8226f2ae925bc14 | 7.56 | 12 |
"""Configuration file handling"""
import logging
import os
from collections import UserDict
import yaml
from . import ConfigurationError, InvocationError
from .utils import first_not_none
_logger = logging.getLogger(__name__)
class Config(UserDict):
"""Configuration mapping"""
def get_site_config(self, n... | ecmwf/troika | src/troika/config.py | .py | 27bb082390186d7f | 7.56 | 12 |
"""Base connection class"""
from __future__ import annotations
import logging
from abc import ABC, abstractmethod
from subprocess import PIPE
from typing import IO, TYPE_CHECKING, Any, ClassVar
if TYPE_CHECKING:
from collections.abc import Mapping, Sequence
from os import PathLike
from subprocess import ... | ecmwf/troika | src/troika/connections/base.py | .py | 386fb41e8c4c27fc | 7.56 | 12 |
"""Local connection class"""
from __future__ import annotations
import logging
import os
import pathlib
import shutil
import subprocess
from subprocess import DEVNULL, STDOUT
from typing import TYPE_CHECKING, Any
from .base import Connection
if TYPE_CHECKING:
from collections.abc import Mapping, Sequence
fr... | ecmwf/troika | src/troika/connections/local.py | .py | 13ff618fb08c4bad | 7.56 | 12 |
"""SSH connection class"""
from __future__ import annotations
import logging
import pathlib
import shlex
from subprocess import PIPE
from typing import TYPE_CHECKING, Any
from ..utils import check_retcode, parse_bool
from .base import Connection
from .local import LocalConnection
if TYPE_CHECKING:
from collecti... | ecmwf/troika | src/troika/connections/ssh.py | .py | 9fd4d7ed2f0b1f94 | 7.56 | 12 |
"""Base controller class"""
import logging
import os
import pathlib
import shutil
import tempfile
from .. import ConfigurationError, InvocationError, RunError, hook, site
from ..directives import ALIASES, translators
from ..generator import Generator
from ..parser import DirectiveParser, MultiParser, ParseError, Sheb... | ecmwf/troika | src/troika/controllers/base.py | .py | f05b3df0223e8627 | 7.56 | 12 |
"""Script header generation logic"""
import logging
from . import ConfigurationError, InvocationError
_logger = logging.getLogger(__name__)
def ignore(value):
"""Ignore the requested directive"""
return None
class Generator:
"""Base script header generator
Parameters
----------
directive... | ecmwf/troika | src/troika/generator.py | .py | 8356399401286bcf | 7.56 | 12 |
"""Base hook definitions"""
from __future__ import annotations
import functools
import logging
from typing import ClassVar
from .. import ConfigurationError
from ..components import get_entrypoint
_logger = logging.getLogger(__name__)
class Hook:
"""Helper class to manage hooks
Parameters
----------
... | ecmwf/troika | src/troika/hooks/base.py | .py | 991c9b5616316df0 | 7.56 | 12 |
"""Common hooks"""
import logging
import pathlib
_logger = logging.getLogger(__name__)
def ensure_output_dir(site, output, dryrun=False):
"""Ensure the output directory exists and return its path"""
return site.create_output_dir(output, dryrun=dryrun)
def remove_previous_output(site, script, output, dryru... | ecmwf/troika | src/troika/hooks/common.py | .py | bde41d3b6e68c8dd | 7.56 | 12 |
"""Logging system"""
import logging
import pathlib
LOGLEVELS = [
logging.CRITICAL,
logging.ERROR,
logging.WARNING,
logging.INFO,
logging.DEBUG,
]
_logger = logging.getLogger(__name__)
def get_logfile_path(action, script=None):
"""Construct the path to the default log file
Parameters
... | ecmwf/troika | src/troika/log.py | .py | 14465051f2a72ca1 | 7.56 | 12 |
"""Script parsing logic
Troika directives are of the form::
# troika key=value
To be recognised, a line **must** start with the # sign, optionally followed by
white space, the string "troika" (case-insensitive), at least one white space
character, and a key-value pair. Valid keys consist only of letters, numbers... | ecmwf/troika | src/troika/parser.py | .py | b1bc0e7fb19225bb | 7.56 | 12 |
"""Sites handling"""
from __future__ import annotations
import logging
from typing import TYPE_CHECKING, Any
from . import ConfigurationError, InvocationError
from .components import get_entrypoint
from .connection import get_connection
if TYPE_CHECKING:
from collections.abc import Iterator
from .config im... | ecmwf/troika | src/troika/site.py | .py | 4f7bae4c9624563e | 7.56 | 12 |
"""Site group class"""
from __future__ import annotations
import logging
from typing import TYPE_CHECKING, Any
from .. import RunError
from ..site import get_site
from .base import Site
if TYPE_CHECKING:
import pathlib
from collections.abc import Mapping
from ..config import Config
from ..connectio... | ecmwf/troika | src/troika/sites/group.py | .py | 9351ebbd50ac7bf2 | 7.56 | 12 |
"""Slurm-managed site"""
from __future__ import annotations
import logging
import pathlib
import re
import signal
import time
from collections import OrderedDict
from subprocess import PIPE
from typing import IO, TYPE_CHECKING, Any
from .. import InvocationError, RunError, generator
from ..parser import BaseParser, ... | ecmwf/troika | src/troika/sites/slurm.py | .py | 6b85213fa5229c79 | 7.56 | 12 |
"""Directive translator"""
import logging
from ..hooks.base import Hook
_logger = logging.getLogger(__name__)
class Translator(Hook):
"""Directive translation hook manager
See :py:class:`troika.hooks.base.Hook`. The only change is the behaviour of the
:py:meth:`__call__` method::
def __call__... | ecmwf/troika | src/troika/translators/base.py | .py | c50b8829d836e585 | 7.56 | 12 |
"""Common directive translators"""
from .. import ConfigurationError
def join_output_error(script_data, global_config, site):
"""Add the 'join_output_error' directive when needed"""
if "error_file" not in script_data["directives"]:
script_data["directives"]["join_output_error"] = ()
return script... | ecmwf/troika | src/troika/translators/common.py | .py | b6962c7a6d22b760 | 7.56 | 12 |
"""Various utilities"""
import logging
import signal
from . import RunError
_logger = logging.getLogger(__name__)
def normalise_signal(sig):
"""Get the `signal.Signals` value associated with the given signal
>>> normalise_signal(2)
<Signals.SIGINT: 2>
>>> normalise_signal('KILL')
<Signals.SIGK... | ecmwf/troika | src/troika/utils.py | .py | 8d6f1502bde88738 | 7.56 | 12 |
import { DataId } from "../../lib";
describe("DataId", () => {
const parseEqualityData = [
"/dnv-v2/vis-3-4a/1031/meta/cnt-refrigerant/state-leaking",
"/dnv-v2/vis-3-4a/1021.1i-6P/H123/meta/qty-volume/cnt-cargo/pos~percentage",
"/dnv-v2/vis-3-4a/652.31/S90.3/S61/sec/652.1i-1P/meta/cnt-sea.w... | dnv-opensource/vista-sdk | js/packages/vista-sdk-experimental/tests/transport/DataId.test.ts | .ts | b1d1b3061bd29d29 | 7.02 | 10 |
import numpy as np
from sklearn.linear_model import LinearRegression
class polyCoeff:
def __init__(self, src=None, tgt=None) -> None:
'''The class of polynomial matching coefficient.'''
if (not src is None) and (not tgt is None):
source = src.astype(np.float64)
targe... | bcmi/Image-Harmonization-Dataset-ccHarmony | polynomial_matching.py | .py | cbc483f1f97678b1 | 7.66 | 20 |
from __future__ import annotations
import abc
import datetime
import enum
import logging
import os
import select
import signal
import threading
import time
import typing
import psycopg
import psycopg.errors
import tenacity
from dsw.database.model import PersistentCommand
from .query import CommandQueries
if typin... | ds-wizard/engine-tools | packages/dsw-command-queue/dsw/command_queue/command_queue.py | .py | f89bb8fbb8b5ef4c | 7.42 | 6 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
""" pandoc-docx-pagebreakpy
Pandoc filter to insert pagebreak as openxml RawBlock
Only for docx output
- https://github.com/UoA-eResearch/pandoc-docx-pagebreak-py
"""
import panflute as pf
class DocxPagebreak(object):
@staticmethod
def _make_pagebreak():
... | ds-wizard/engine-tools | packages/dsw-document-worker/addons/pandoc-docx-pagebreak-py/docx_pagebreak.py | .py | e24f21f7ea28db62 | 7.42 | 6 |
from __future__ import annotations
import logging
import typing
import urllib.parse
import requests
if typing.TYPE_CHECKING:
from ..config import TemplateConfig
from ..urls import UrlPolicy
LOG = logging.getLogger(__name__)
# Keyword arguments that must not be overridden by a template as they would
# wea... | ds-wizard/engine-tools | packages/dsw-document-worker/dsw/document_worker/model/http.py | .py | 126f30ee0fbbbe02 | 7.42 | 6 |
from __future__ import annotations
import io
import re
import typing
import markdown
import markdown.preprocessors
import markupsafe
from ..sanitizer import sanitize_html
def unmark_element(element, stream=None):
if stream is None:
stream = io.StringIO()
if element.text:
stream.write(elemen... | ds-wizard/engine-tools | packages/dsw-document-worker/dsw/document_worker/model/utils.py | .py | 3add8a285e5361e0 | 7.42 | 6 |
from __future__ import annotations
import re
import nh3
# Attributes that hold a URL and therefore need scheme checking
URL_ATTRIBUTES = frozenset({
('a', 'href'),
('area', 'href'),
('blockquote', 'cite'),
('del', 'cite'),
('img', 'src'),
('ins', 'cite'),
('q', 'cite'),
})
# Tags allowe... | ds-wizard/engine-tools | packages/dsw-document-worker/dsw/document_worker/sanitizer.py | .py | 3495b8d817468d3a | 7.42 | 6 |
"""Plugin registries for sources, destinations, and extractors.
Each plugin class registers itself with a decorator so the factory functions can
resolve a config ``type`` by registry lookup. The registries also expose
``list_sources()`` / ``list_destinations()`` / ``list_extractors()`` for tooling
(e.g. the ``config s... | apicrafter/datacrafter | datacrafter/_registry.py | .py | 270cc874959c2b12 | 7.62 | 16 |
"""Data collection module for downloading files from URLs."""
import logging
import os
import shutil
import subprocess
import tempfile
import time
from functools import wraps
from urllib import parse
import requests
from bs4 import BeautifulSoup
from ..constants import DEFAULT_MAX_RETRIES, DEFAULT_RETRY_BACKOFF, DEFA... | apicrafter/datacrafter | datacrafter/common/collect.py | .py | ab20dd7dcded5d7f | 7.62 | 16 |
"""Common utility functions for dictionary operations."""
from typing import Any, Dict, List, Optional, Union
Nested = Union[Dict[str, Any], List[Any]]
def get_dict_value(adict: dict, key: str, prefix: Optional[list] = None) -> Any:
"""Get value from nested dictionary using dot-separated key path."""
if pref... | apicrafter/datacrafter | datacrafter/common/common.py | .py | c460f31c0e447b50 | 7.62 | 16 |
"""Data format converters module."""
import csv
import json
import logging
import sys
from collections import defaultdict
try:
import bson
from bson.json_util import dumps
HAS_BSON = True
except ImportError:
HAS_BSON = False
bson = None
dumps = None
try:
import lxml.etree as etree
HAS_... | apicrafter/datacrafter | datacrafter/common/converters.py | .py | 31da7dffeb6ed44b | 7.62 | 16 |
"""Write a Frictionless Data Package descriptor beside file output."""
import json
import os
from .infer import infer_field_types, iter_jsonl_path
FRICTIONLESS_TYPES = {
'int': 'integer',
'float': 'number',
'bool': 'boolean',
'date': 'date',
'datetime': 'datetime',
'string': 'string',
}
def ... | apicrafter/datacrafter | datacrafter/common/datapackage.py | .py | af94e74539de3d4a | 7.62 | 16 |
"""Interpolate ${VAR} and ${VAR:-default} in loaded YAML values."""
import os
import re
ENV_PATTERN = re.compile(
r'\$\{([A-Za-z_][A-Za-z0-9_]*)(?::-([^}]*))?\}'
)
class MissingEnvVarError(ValueError):
"""Raised when a required ${VAR} has no environment value and no default."""
def interpolate_env(value, e... | apicrafter/datacrafter | datacrafter/common/env.py | .py | e1f0a3495833185f | 7.62 | 16 |
"""Infer field types and summarize JSONL records for schema/metrics."""
import hashlib
import json
import os
from collections import Counter, defaultdict
from datetime import date, datetime
from typing import Any, Dict, Iterable, Iterator, List, Optional, Tuple
from .mappers import convert_to_datetime
BOOL_STRINGS = ... | apicrafter/datacrafter | datacrafter/common/infer.py | .py | d2dc57898225ed09 | 7.62 | 16 |
"""Data mapping and transformation utilities."""
import datetime
import logging
from typing import Any, Optional
from ..common.common import get_dict_value, set_dict_value
from ..constants import DATE_PATTERNS_SHORT, DATETIME_PATTERNS
TYPE_DATE = 1
TYPE_INT = 2
TYPE_FLOAT = 3
def date_handler(obj):
"""JSON defa... | apicrafter/datacrafter | datacrafter/common/mappers.py | .py | 161e394b951aa6a1 | 7.62 | 16 |
# -*- coding: utf-8 -*-
"""Project state management module."""
import logging
import os
from json import dumps, load
class ProjectState:
"""Keeps project state"""
def __init__(self, filename=None, reset=True, autosave=True):
self.data = {}
self.filename = filename
self.autosave = auto... | apicrafter/datacrafter | datacrafter/common/state.py | .py | 1ad53e29e60e2dd2 | 7.62 | 16 |
"""Destination modules for writing data to various targets."""
import os
from .._registry import (
UnknownDestinationTypeError,
get_destination_class,
list_destinations,
)
from .arango import ArangoDBDestination
from .bsonf import BSONDestination
from .couchdb import CouchDBDestination
from .csv import CSV... | apicrafter/datacrafter | datacrafter/destinations/__init__.py | .py | 3bb48109a9c9d4af | 7.62 | 16 |
# -*- coding: utf8 -*-
"""ArangoDB destination module."""
try:
from arango import ArangoClient
HAS_ARANGO = True
except ImportError:
HAS_ARANGO = False
ArangoClient = None
from .._registry import register_destination
from .base import BaseDBDestination
@register_destination("arangodb")
class ArangoDB... | apicrafter/datacrafter | datacrafter/destinations/arango.py | .py | 56378ab57adfe1bd | 7.62 | 16 |
"""BSON file destination module."""
try:
from bson import BSON
HAS_BSON = True
except ImportError:
HAS_BSON = False
BSON = None
from .._registry import register_destination
from .base import BaseFileDestination
@register_destination("file-bson")
class BSONDestination(BaseFileDestination):
"""BSON... | apicrafter/datacrafter | datacrafter/destinations/bsonf.py | .py | d54e21321724f334 | 7.62 | 16 |
# -*- coding: utf8 -*-
"""CouchDB destination module."""
try:
import pycouchdb
HAS_PYCOUCHDB = True
except ImportError:
HAS_PYCOUCHDB = False
pycouchdb = None
from .._registry import register_destination
from .base import BaseDBDestination
@register_destination("couchdb")
class CouchDBDestination(Bas... | apicrafter/datacrafter | datacrafter/destinations/couchdb.py | .py | 8987468933fb40d4 | 7.62 | 16 |
"""CSV destination module."""
from csv import DictWriter
from .._registry import register_destination
from .base import BaseFileDestination
@register_destination("file-csv")
class CSVDestination(BaseFileDestination):
"""CSV destination implementation."""
def __init__(
self, filename, keys=None, d... | apicrafter/datacrafter | datacrafter/destinations/csv.py | .py | dcc2834bbdd96345 | 7.62 | 16 |
"""JSON Lines destination module."""
from json import dumps
from .._registry import register_destination
from ..common.mappers import date_handler
from .base import BaseFileDestination
@register_destination("file-jsonl")
class JSONLinesDestination(BaseFileDestination):
"""JSON Lines destination implementation.""... | apicrafter/datacrafter | datacrafter/destinations/jsonl.py | .py | 1337106fcd41c7c5 | 7.62 | 16 |
"""Meilisearch destination module."""
import logging
import uuid
try:
import meilisearch
HAS_MEILISEARCH = True
except ImportError:
HAS_MEILISEARCH = False
meilisearch = None
from .._registry import register_destination
from .base import BaseSearchDestination
@register_destination("meilisearch")
cla... | apicrafter/datacrafter | datacrafter/destinations/meilisearch.py | .py | c76e6036668e7805 | 7.62 | 16 |
"""MongoDB destination module."""
try:
from pymongo import MongoClient
HAS_PYMONGO = True
except ImportError:
HAS_PYMONGO = False
MongoClient = None
from .._registry import register_destination
from .base import BaseDBDestination
@register_destination("mongodb")
class MongoDBDestination(BaseDBDestina... | apicrafter/datacrafter | datacrafter/destinations/mongo.py | .py | 5537cec0602fe4cd | 7.62 | 16 |
"""APIBackuper-backed extractor."""
from .._registry import register_extractor
from .base import BaseExtractor
@register_extractor("api")
class ApiExtractor(BaseExtractor):
"""Run an APIBackuper project and export JSON Lines."""
def run(self, update_state=True):
self.validate()
self.results =... | apicrafter/datacrafter | datacrafter/extractors/api.py | .py | d9524d50cfa73766 | 7.12 | 16 |
"""Trusted in-project Python script extractor."""
from .._registry import register_extractor
from .base import BaseExtractor
@register_extractor("code")
class CodeExtractor(BaseExtractor):
"""Execute ``collect(config)`` from a script under the project directory."""
def run(self, update_state=True):
s... | apicrafter/datacrafter | datacrafter/extractors/code.py | .py | a127c313b4a9c2b4 | 7.12 | 16 |
"""DCAT catalog extractor."""
from .._registry import register_extractor
from .base import BaseExtractor
@register_extractor("dcat")
class DcatExtractor(BaseExtractor):
"""Parse a DCAT catalog into JSON Lines under ``current/``."""
def run(self, update_state=True):
self.validate()
self.result... | apicrafter/datacrafter | datacrafter/extractors/dcat.py | .py | 03bc210ea11446ae | 7.12 | 16 |
"""URL and pattern-based file extractors (CSV, JSON, XLSX, ZIP, …)."""
from .._registry import register_extractor
from .base import FILEEXT_MAP, BaseExtractor
@register_extractor(*FILEEXT_MAP)
class FileExtractor(BaseExtractor):
"""Download a single file into ``current/`` by URL or URL pattern."""
def run(se... | apicrafter/datacrafter | datacrafter/extractors/file.py | .py | c75b1ededf3233d4 | 7.12 | 16 |
"""RSS/Atom catalog extractor."""
from .._registry import register_extractor
from .base import BaseExtractor
@register_extractor("rss")
class RssExtractor(BaseExtractor):
"""Parse an RSS or Atom feed into JSON Lines under ``current/``."""
def run(self, update_state=True):
self.validate()
self... | apicrafter/datacrafter | datacrafter/extractors/rss.py | .py | c1479ffdaefc7973 | 7.12 | 16 |
from typing import Any, Iterator, List, Optional
SOURCE_TYPE_STREAM = 10
SOURCE_TYPE_FILE = 20
DEFAULT_BULK_NUMBER = 100
class BaseSource:
"""Base data source class"""
def __init__(self) -> None:
pass
def reset(self) -> None:
"""Reset iterator"""
raise NotImplementedError
d... | apicrafter/datacrafter | datacrafter/sources/base.py | .py | d3a3286ae0e7c6a9 | 7.62 | 16 |
"""BSON file source module."""
try:
import bson
HAS_BSON = True
except ImportError:
HAS_BSON = False
bson = None
from .._registry import register_source
from .base import BaseFileSource
@register_source("bson")
class BSONSource(BaseFileSource):
"""BSON file source implementation."""
def __ini... | apicrafter/datacrafter | datacrafter/sources/bsonf.py | .py | 4d39efd1ecd10069 | 7.62 | 16 |
"""CSV source module."""
from csv import DictReader
from .._registry import register_source
from .base import BaseFileSource
@register_source("csv")
class CSVSource(BaseFileSource):
"""CSV source implementation."""
def __init__(
self, filename=None, stream=None, keys=None, delimiter=',',
... | apicrafter/datacrafter | datacrafter/sources/csv.py | .py | 3432d4669ca931b6 | 7.62 | 16 |
"""JSON source module."""
import json
from .._registry import register_source
from .base import BaseFileSource
@register_source("json")
class JSONSource(BaseFileSource):
"""JSON source implementation."""
def __init__(self, filename=None, stream=None, tagname=None):
super().__init__(filename, stream, ... | apicrafter/datacrafter | datacrafter/sources/json.py | .py | 275afb63dc1adffd | 7.62 | 16 |
"""JSON Lines source module."""
from json import loads
from .._registry import register_source
from .base import BaseFileSource
@register_source("jsonl")
class JSONLinesSource(BaseFileSource):
"""JSON Lines source implementation."""
def __init__(self, filename=None, stream=None):
super().__init__(fil... | apicrafter/datacrafter | datacrafter/sources/jsonl.py | .py | dcd5611618ee1a39 | 7.62 | 16 |
"""XLS source module."""
import datetime
try:
import xlrd
from xlrd import open_workbook
HAS_XLRD = True
except ImportError:
HAS_XLRD = False
xlrd = None
open_workbook = None
from .._registry import register_source
from .base import BaseFileSource
def read_single_row(rownum, ncols, datemode,... | apicrafter/datacrafter | datacrafter/sources/xls.py | .py | 46bbfa4e0468ad8b | 7.62 | 16 |
"""XLSX source module."""
try:
from openpyxl import load_workbook
HAS_OPENPYXL = True
except ImportError:
HAS_OPENPYXL = False
load_workbook = None
from .._registry import register_source
from .base import BaseFileSource
@register_source("xlsx")
class XLSXSource(BaseFileSource):
"""XLSX source im... | apicrafter/datacrafter | datacrafter/sources/xlsx.py | .py | 902c4216743ad541 | 7.62 | 16 |
"""XML source module."""
try:
from lxml import etree
HAS_LXML = True
except ImportError:
HAS_LXML = False
etree = None
from .._registry import register_source
from ..common.converters import etree_to_dict
from .base import BaseFileSource
@register_source("xml")
class XMLSource(BaseFileSource):
""... | apicrafter/datacrafter | datacrafter/sources/xml.py | .py | 2d3985c81b4dc02f | 7.62 | 16 |
"""ZIP file source wrapper module."""
from zipfile import ZipFile
from .base import BaseSource
class ZIPSourceWrapper(BaseSource):
"""ZIP file source wrapper implementation."""
def __init__(self, filename, binary=False):
super().__init__()
self.fobj = ZipFile(filename, mode='r')
self.... | apicrafter/datacrafter | datacrafter/sources/zipped.py | .py | 448c60928fff5c8f | 7.62 | 16 |
"""ZIP XML source module."""
try:
from lxml import etree
HAS_LXML = True
except ImportError:
HAS_LXML = False
etree = None
from .._registry import register_source
from ..common.converters import etree_to_dict
from .zipped import ZIPSourceWrapper
@register_source("zipxml")
class ZIPXMLSource(ZIPSource... | apicrafter/datacrafter | datacrafter/sources/zipxml.py | .py | ad4bf23723e52e01 | 7.62 | 16 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import unittest
import numpy as np
from ampyl.spaces import ThreeBodyKinematicSpace
from ampyl import qc_functions
class TestGArrayVariantsAgree(unittest.TestCase):
"""The two G-block builders must produce identical output.
getG_array slices shell blocks out of... | mthansen/ampyl | tests/test_g.py | .py | 77cf4946eaee7218 | 8 | 9 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import unittest
from types import SimpleNamespace
import numpy as np
import ampyl
from ampyl.k_matrices import Kdf
class TestK(unittest.TestCase):
"""Class to test the two-particle K matrix."""
def test_k_dimer_symmetry_factor(self):
"""Test K is double... | mthansen/ampyl | tests/test_k.py | .py | 170b9d1e42779ef9 | 8 | 9 |
"""Process GEDCOM 7 event data."""
from gedcom7 import const as g7const
from gedcom7 import grammar as g7grammar
from gedcom7 import types as g7types
from gedcom7 import util as g7util
from gramps.gen.lib import (
AttributeType,
Event,
EventType,
Place,
PlaceName,
PlaceRef,
PlaceType,
U... | DavidMStraub/gramps-gedcom7 | gramps_gedcom7/event.py | .py | fcc2df61c3d20441 | 7.5 | 9 |
"""Handle GEDCOM individual records and import them into the Gramps database."""
from typing import List
from gedcom7 import const as g7const
from gedcom7 import grammar as g7grammar
from gedcom7 import types as g7types
from gramps.gen.lib import (
EventRef,
EventType,
Name,
NameType,
Person,
... | DavidMStraub/gramps-gedcom7 | gramps_gedcom7/individual.py | .py | b706d8201e439682 | 7.5 | 9 |
"""Process GEDCOM structures and import them into the Gramps database."""
from __future__ import annotations
from gedcom7 import const as g7const
from gedcom7 import types as g7types
from gramps.gen.db import DbTxn, DbWriteBase
from .family import handle_family
from .header import handle_header
from .individual impo... | DavidMStraub/gramps-gedcom7 | gramps_gedcom7/process.py | .py | e4e07d8a59afbd80 | 7.5 | 9 |
"""Streamlit app for GEDCOM 7 to Gramps-XML conversion."""
import gzip
import subprocess
import tempfile
import traceback
from pathlib import Path
from typing import List, Optional, Tuple
import gi
gi.require_version("Gtk", "3.0")
import streamlit as st
from gramps.cli.user import User
from gramps.gen.db import DbW... | DavidMStraub/gramps-gedcom7 | gramps_gedcom7/streamlit_app.py | .py | 1213fec85f0ae72a | 7.5 | 9 |
"""Handle GEDCOM submitter records and import them into the Gramps database."""
from typing import List
from gedcom7 import const as g7const
from gedcom7 import grammar as g7grammar
from gedcom7 import types as g7types
from gedcom7 import util as g7util
from gramps.gen.lib import Address, Repository, RepositoryType, ... | DavidMStraub/gramps-gedcom7 | gramps_gedcom7/submitter.py | .py | 208d6e552f0c8513 | 7.5 | 9 |
"""Utility functions for handling GEDCOM 7 data in Gramps."""
from __future__ import annotations
import uuid
from gedcom7 import const as g7const
from gedcom7 import grammar as g7grammar
from gedcom7 import types as g7types
from gedcom7 import util as g7util
from gramps.gen.lib import (
Date,
Note,
NoteT... | DavidMStraub/gramps-gedcom7 | gramps_gedcom7/util.py | .py | 0b2bed9cab8f3ddd | 7.5 | 9 |
import sys
import subprocess
from importlib import resources
import importlib.util
def find_app_path():
"""Find the path to the streamlit_app.py file.
Returns:
str or None: Path to streamlit_app.py if found, None otherwise.
"""
try:
traversable = resources.files("gramps_gedcom7").j... | DavidMStraub/gramps-gedcom7 | gramps_gedcom7/web.py | .py | d4d7b20b8f1894d7 | 7.5 | 9 |
"""Test ALIA and ASSO structures."""
import pytest
from gramps.gen.db import DbWriteBase
from gramps.gen.db.utils import make_database
from gramps_gedcom7.importer import import_gedcom
GEDCOM_FILE = "test/data/alia_asso.ged"
@pytest.fixture
def db():
"""Import test GEDCOM and return database."""
database: ... | DavidMStraub/gramps-gedcom7 | test/test_alia_asso.py | .py | 7fb294c365ecf95b | 7 | 9 |
"""Test GEDCOM 7 attribute handling."""
from gramps.gen.db import DbWriteBase
from gramps.gen.db.utils import make_database
from gramps.gen.lib import AttributeType
from gramps_gedcom7.importer import import_gedcom
def test_individual_attributes():
"""Test that individual attributes are correctly imported."""
... | DavidMStraub/gramps-gedcom7 | test/test_attributes.py | .py | b33be61cba10b72d | 7 | 9 |
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