text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
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|---|---|---|---|---|---|---|
"""Integration tests around Component functionality."""
from typing import AbstractSet, Mapping
from ansys.engineeringworkflow.api import Property
import ansys.tools.variableinterop as atvi
import pytest
import ansys.modelcenter.workflow.api as mc_api
import ansys.modelcenter.workflow.grpc_modelcenter as grpcmc
de... | ansys/pymodelcenter | integration/test_component.py | .py | 86813484e51fa48c | 7.92 | 6 |
"""Integration tests around Engine functionality."""
import os
from typing import Collection, Mapping
import ansys.engineeringworkflow.api as ewapi
import ansys.modelcenter.workflow.api as mcapi
import ansys.modelcenter.workflow.grpc_modelcenter as grpcmc
def test_can_create_a_new_workflow(engine) -> None:
# A... | ansys/pymodelcenter | integration/test_engine.py | .py | b958774ff84eb2de | 7.92 | 6 |
"""Integration tests around Group functionality."""
from typing import List
import unittest
import ansys.tools.variableinterop as atvi
import pytest
import ansys.modelcenter.workflow.api as mcapi
@pytest.mark.workflow_name("linked_quadratics.pxcz")
def test_can_get_link_information(workflow) -> None:
case = un... | ansys/pymodelcenter | integration/test_links.py | .py | 46d0ef4fbbf2de01 | 7.92 | 6 |
# Copyright (C) 2022 - 2026 Synopsys, Inc. and ANSYS, Inc. All rights reserved.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, includi... | ansys/pymodelcenter | src/ansys/modelcenter/workflow/api/iassembly.py | .py | 692a4a6096b27abf | 7.42 | 6 |
# Copyright (C) 2022 - 2026 Synopsys, Inc. and ANSYS, Inc. All rights reserved.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, includi... | ansys/pymodelcenter | src/ansys/modelcenter/workflow/api/idatapin.py | .py | 530e83880c7468b2 | 7.42 | 6 |
# Copyright (C) 2022 - 2026 Synopsys, Inc. and ANSYS, Inc. All rights reserved.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, includi... | ansys/pymodelcenter | src/ansys/modelcenter/workflow/api/idatapin_link.py | .py | e1b265f9e992ab00 | 7.42 | 6 |
# Copyright (C) 2022 - 2026 Synopsys, Inc. and ANSYS, Inc. All rights reserved.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, includi... | ansys/pymodelcenter | src/ansys/modelcenter/workflow/api/idatapinreferencebase.py | .py | 518682e784c7faeb | 7.42 | 6 |
# Copyright (C) 2022 - 2026 Synopsys, Inc. and ANSYS, Inc. All rights reserved.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, includi... | ansys/pymodelcenter | src/ansys/modelcenter/workflow/api/ireferencearraydatapin.py | .py | f2db44179715c435 | 7.42 | 6 |
import numpy as np
import scipy.sparse as sp
from pydiso.mkl_solver import (
MKLPardisoSolver as Solver,
get_mkl_max_threads,
get_mkl_pardiso_max_threads,
get_mkl_version,
set_mkl_threads,
set_mkl_pardiso_threads,
)
from concurrent.futures import ThreadPoolExecutor
import pytest
import sys
np.r... | simpeg/pydiso | tests/test_pydiso.py | .py | 0c804c897f8b788e | 8.14 | 18 |
from fastapi import APIRouter, Request
from infrastructure.configuration.app import get_app_settings
from infrastructure.security import get_limiter
router = APIRouter(tags=["System"])
limiter = get_limiter()
settings = get_app_settings()
# Route53 uses this as a healthcheck every 30 seconds and the alb uses this a... | cds-snc/sre-bot | app/api/routes/system.py | .py | 13c90117ce5ddfb8 | 7.56 | 12 |
#!/usr/bin/env python3
"""Freeze-baseline guardrail for deprecated `infrastructure.clients` imports.
Scans every .py file under app/ (this script's parent directory) for imports of the
deprecated `infrastructure.clients` package and compares the result against the
checked-in baseline (app/bin/baselines/deprecated_infr... | cds-snc/sre-bot | app/bin/check_deprecated_infra_client_imports.py | .py | da527619ec928991 | 7.56 | 12 |
#!/usr/bin/env python3
"""Freeze-baseline guardrail for SDK typing anti-patterns.
Scans every .py file under app/integrations/ for retired SDK anti-patterns and
compares the result against the checked-in baseline
(app/bin/baselines/sdk_typing_antipatterns.txt). Files already in the baseline
are grandfathered; any file... | cds-snc/sre-bot | app/bin/check_sdk_typing.py | .py | 02848bc6d3c6fe98 | 7.56 | 12 |
"""Sentinel SIEM adapter for audit events.
Converts internal AuditEvent records into flat format required by Sentinel.
All metadata fields are stringified and prefixed with 'audit_meta_' for
queryability in Sentinel's query language.
"""
from typing import Any
from infrastructure.audit.models import AuditEvent
cla... | cds-snc/sre-bot | app/infrastructure/audit/adapters/sentinel.py | .py | 27734b081944c612 | 7.56 | 12 |
"""AWS Config client implementation.
Provides operations to interact with AWS Config service, enabling retrieval of configuration compliance and resource details, with consistent error handling via OperationResult.
"""
from typing import Any
from infrastructure.clients.aws.executor import execute_aws_api_call
from i... | cds-snc/sre-bot | app/infrastructure/clients/aws/config.py | .py | f2b4240bd6658655 | 7.56 | 12 |
"""AWS Cost Explorer client implementation.
Provides operations to interact with AWS Cost Explorer service, enabling retrieval of cost and usage data with consistent error handling via OperationResult.
"""
from typing import Any
import structlog
from infrastructure.clients.aws.executor import execute_aws_api_call
f... | cds-snc/sre-bot | app/infrastructure/clients/aws/cost_explorer.py | .py | 87f47132263a6159 | 7.56 | 12 |
"""Base AWS client utilities for infrastructure clients.
Provides `get_boto3_client` and `execute_aws_api_call` with the
OperationResult pattern. This module intentionally avoids reading
settings at import time and accepts configuration via parameters.
"""
import time
from collections.abc import Callable
from typing ... | cds-snc/sre-bot | app/infrastructure/clients/aws/executor.py | .py | 70dc3bf0d247b91c | 7.56 | 12 |
"""AWS Clients facade for all AWS service operations.
Provides attribute-based access to per-service clients (DynamoDB, Identity Store,
Organizations, SSO Admin) with consistent error handling and OperationResult return types.
Composition-based design: each service has a focused client class, composed together
in a l... | cds-snc/sre-bot | app/infrastructure/clients/aws/facade.py | .py | 8acf9a8773bf2efd | 7.56 | 12 |
"""AWS GuardDuty client implementation.
Provides operations to interact with AWS GuardDuty service, enabling retrieval of detectors and findings statistics with consistent error handling via OperationResult.
"""
import structlog
from infrastructure.clients.aws.executor import execute_aws_api_call
from infrastructure... | cds-snc/sre-bot | app/infrastructure/clients/aws/guard_duty.py | .py | da7eb7b6f76d9ade | 7.56 | 12 |
"""AWS Health client for checking the health of AWS services.
Provides aggregated health check operations for AWS services, enabling monitoring and alerting for service availability and performance issues.
"""
from collections.abc import Callable, Iterable
import structlog
from infrastructure.clients.aws.config imp... | cds-snc/sre-bot | app/infrastructure/clients/aws/health.py | .py | a47ec1fd23b36cc3 | 7.56 | 12 |
"""Session provider for AWS client operations.
Centralizes boto3 session creation, credential management, and configuration
building for all AWS service clients. Handles role assumption and parameter
propagation for cross-account access.
"""
from typing import Any
import structlog
from infrastructure.clients.aws.ex... | cds-snc/sre-bot | app/infrastructure/clients/aws/session_provider.py | .py | 04421da91537fd2b | 7.56 | 12 |
"""Low-level Google API execution utilities with retry and error handling."""
import time
from collections.abc import Callable
from typing import Any
import structlog
from googleapiclient.errors import HttpError
from infrastructure.operations.result import OperationResult
logger = structlog.get_logger()
# Error c... | cds-snc/sre-bot | app/infrastructure/clients/google_workspace/executor.py | .py | 807e990e31f91ffc | 7.56 | 12 |
"""Google Workspace clients facade for all service operations."""
from functools import lru_cache
from typing import TYPE_CHECKING
import structlog
from infrastructure.clients.google_workspace.directory import DirectoryClient
from infrastructure.clients.google_workspace.docs import DocsClient
from infrastructure.cli... | cds-snc/sre-bot | app/infrastructure/clients/google_workspace/facade.py | .py | af5abf333c96121c | 7.56 | 12 |
"""Google Workspace session provider for authentication and service creation."""
import json
import structlog
from google.oauth2 import service_account
from googleapiclient.discovery import Resource, build
logger = structlog.get_logger()
class SessionProvider:
"""Manages Google Workspace API authentication and... | cds-snc/sre-bot | app/infrastructure/clients/google_workspace/session_provider.py | .py | e63c99f772361ea8 | 7.56 | 12 |
"""MaxMind GeoIP2 client for geolocation operations.
Provides type-safe access to MaxMind GeoIP2 database with consistent error handling
and OperationResult return types.
"""
from dataclasses import dataclass
from functools import cache
from typing import TYPE_CHECKING
import geoip2.database
import structlog
from ge... | cds-snc/sre-bot | app/infrastructure/clients/maxmind/client.py | .py | 98473694f8614795 | 7.56 | 12 |
"""Application-level settings and singleton provider."""
from functools import lru_cache
from typing import Literal
from pydantic import Field, model_validator
from pydantic_settings import BaseSettings, SettingsConfigDict
class AppSettings(BaseSettings):
"""App-level settings including CORS policy while Securi... | cds-snc/sre-bot | app/infrastructure/configuration/app.py | .py | f41bdd143931bce3 | 7.56 | 12 |
"""ATIP feature settings."""
from functools import lru_cache
from pydantic import Field
from infrastructure.configuration.base import FeatureSettings
class AtipSettings(FeatureSettings):
"""ATIP (Access to Information and Privacy) feature configuration.
Environment Variables:
ATIP_ANNOUNCE_CHANNEL... | cds-snc/sre-bot | app/infrastructure/configuration/features/atip.py | .py | c5cd0c19f835965b | 7.56 | 12 |
"""AWS operations feature settings."""
from functools import lru_cache
from pydantic import Field
from infrastructure.configuration.base import FeatureSettings
class AWSFeatureSettings(FeatureSettings):
"""AWS operations feature configuration.
Environment Variables:
AWS_ADMIN_GROUPS: List of admin... | cds-snc/sre-bot | app/infrastructure/configuration/features/aws_ops.py | .py | 68ee90796a67a59d | 7.56 | 12 |
"""Groups module feature settings."""
import json
from functools import lru_cache
from typing import Any
import structlog
from pydantic import Field, field_validator
from infrastructure.configuration.base import FeatureSettings
logger = structlog.get_logger().bind(component="config.groups")
class GroupsFeatureSet... | cds-snc/sre-bot | app/infrastructure/configuration/features/groups.py | .py | a16c2939ae59ef27 | 7.56 | 12 |
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the... | OpenVoiceOS/ovos-utils | ovos_utils/__init__.py | .py | 6610132a81746c0d | 7.42 | 6 |
from functools import lru_cache, wraps
from time import monotonic_ns
from typing import Callable, Optional, Any
class classproperty(property):
"""
A decorator for creating a class-level property.
Credit to Denis Rhyzhkov on Stackoverflow:
https://stackoverflow.com/a/13624858/1280629
Example:
... | OpenVoiceOS/ovos-utils | ovos_utils/decorators.py | .py | f4efd4951bd4a077 | 7.42 | 6 |
import os
from os.path import join, isdir
from typing import List
from ovos_utils.log import LOG
from ovos_bus_client.util import wait_for_reply
from ovos_utils.system import is_installed, has_screen, is_process_running
_default_gui_apps = (
"ovos-gui-app",
"ovos-shell",
"mycroft-gui-app",
"mycroft-em... | OpenVoiceOS/ovos-utils | ovos_utils/gui.py | .py | e2545354553ac69e | 7.42 | 6 |
import json
from copy import copy
def nested_get(base, key_list):
"""Access a nested object in base by item sequence."""
if not len(key_list):
return None
val = copy(base)
for key in key_list:
if key not in val:
return None
val = val[key]
return val
def nested... | OpenVoiceOS/ovos-utils | ovos_utils/json_helper.py | .py | 2d4ceda1e574e1c3 | 7.42 | 6 |
import warnings
from os import listdir
from os.path import isdir, join
from typing import Optional
from ovos_utils.file_utils import resolve_resource_file
from ovos_utils.log import deprecated
from ovos_utils.version import VERSION_MAJOR
@deprecated("use 'standardize_lang' from 'ovos_spec_tools' instead",
... | OpenVoiceOS/ovos-utils | ovos_utils/lang/__init__.py | .py | 8518282ddf73cf69 | 7.42 | 6 |
import time
class Stopwatch:
"""
Simple time measuring class.
"""
def __init__(self):
self.timestamp = None
self.time = None
def start(self):
"""
Start a time measurement
"""
self.time = None
self.timestamp = time.time()
def la... | OpenVoiceOS/ovos-utils | ovos_utils/metrics.py | .py | 0aaee5d17852d86f | 7.42 | 6 |
import re
from difflib import SequenceMatcher
from enum import IntEnum, auto
from ovos_utils.log import LOG
try:
import rapidfuzz
except ImportError:
rapidfuzz = None
class MatchStrategy(IntEnum):
SIMPLE_RATIO = auto()
RATIO = auto()
PARTIAL_RATIO = auto()
TOKEN_SORT_RATIO = auto()
TOKEN... | OpenVoiceOS/ovos-utils | ovos_utils/parse.py | .py | 52aac3699d44ad9a | 7.42 | 6 |
import os
import platform
import random
import string
from os import makedirs
from os.path import exists, join
from socket import gethostname
import pexpect
from ovos_utils.log import LOG, deprecated
from ovos_utils.version import VERSION_MAJOR
try:
# pycryptodomex
from Cryptodome.Cipher import AES
except Im... | OpenVoiceOS/ovos-utils | ovos_utils/security.py | .py | 5e79cb944c61e4d0 | 7.42 | 6 |
from typing import Any, Set
from ovos_bus_client.util import wait_for_reply
def get_non_properties(obj: Any) -> Set[str]:
"""Get attributes that are not properties from object.
Will return members of object class along with bases down to MycroftSkill.
Args:
obj: object to scan
Returns:
... | OpenVoiceOS/ovos-utils | ovos_utils/skills.py | .py | 605358155dca66f8 | 7.42 | 6 |
from email.mime.multipart import MIMEMultipart
from email.mime.text import MIMEText
from smtplib import SMTP_SSL
from typing import Optional
from ovos_utils.log import LOG
def send_smtp(
user: str,
pswd: str,
sender: str,
destinatary: str,
subject: str,
contents: str,
host: str,
port:... | OpenVoiceOS/ovos-utils | ovos_utils/smtp_utils.py | .py | c288652d93d87bd4 | 7.42 | 6 |
import os
import subprocess
import wave
from copy import deepcopy
from os.path import isfile
from typing import Optional
from shutil import which
from ovos_utils.log import LOG
try:
from ovos_config.config import read_mycroft_config
except ImportError:
LOG.warning("Config not provided and ovos_config not ava... | OpenVoiceOS/ovos-utils | ovos_utils/sound.py | .py | 03e473711556bc49 | 7.42 | 6 |
# Copyright © 2016-2021 Scott Stevenson <scott@stevenson.io>
#
# Permission to use, copy, modify, and/or distribute this software for
# any purpose with or without fee is hereby granted, provided that the
# above copyright notice and this permission notice appear in all
# copies.
#
# THE SOFTWARE IS PROVIDED "AS IS" AN... | OpenVoiceOS/ovos-utils | ovos_utils/xdg_utils.py | .py | 5278475e7e191546 | 7.42 | 6 |
# Copyright (c) 2025-2026 University of Bern. All rights reserved.
import numpy as np
def paired_point_matching(source, target):
"""
Calculates the transformation T that maps the source to the target point clouds.
:param source: A N x 3 matrix with N 3D points.
:param target: A N x 3 matrix with N 3D p... | persmed/cas-assignment | assignments/registration/registration.py | .py | 8c14324728396216 | 7.42 | 6 |
import argparse
import glob
import os
import platform
import shutil
import subprocess
import sys
import textwrap
def find_exe(name: str) -> str:
"""Find an actual executable target
Given the name of an executable, find the actual path to use.
Parameters
----------
name : str
The undecorat... | ansys/pyensight | doc/make.py | .py | b28334cf475609c4 | 7.52 | 10 |
"""Sphinx documentation configuration file."""
from datetime import datetime
import json
import os
import sys
from ansys.pyensight.core import VERSION as __version__
from ansys_sphinx_theme import ansys_favicon, get_version_match
from sphinx_gallery.sorting import FileNameSortKey
sys.path.insert(0, os.path.join(os.p... | ansys/pyensight | doc/source/conf.py | .py | 9355d33df40ded7b | 7.52 | 10 |
import json
import logging
import os
import platform
import subprocess
import sys
import tempfile
from typing import Optional
import uuid
import carb.settings
import omni.ext
import omni.kit.app
import omni.kit.pipapi
"""
The current kit leverages an EnSight installation. It can find this via
environmental variable/... | ansys/pyensight | exts/ansys.tools.omniverse.core/ansys/tools/omniverse/core/extension.py | .py | fc62f7721f5c85b1 | 7.52 | 10 |
# Copyright (C) 2022 - 2026 ANSYS, Inc. and/or its affiliates.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limita... | ansys/pyensight | src/ansys/pyensight/core/common.py | .py | 58db919199123af8 | 7.52 | 10 |
# Copyright (C) 2022 - 2026 ANSYS, Inc. and/or its affiliates.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limita... | ansys/pyensight | src/ansys/pyensight/core/ensobj.py | .py | 3b94625b821547a0 | 7.52 | 10 |
# Copyright (C) 2022 - 2026 ANSYS, Inc. and/or its affiliates.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limita... | ansys/pyensight | src/ansys/pyensight/core/launch_ensight.py | .py | d78607279b80e834 | 7.52 | 10 |
# Copyright (C) 2022 - 2026 ANSYS, Inc. and/or its affiliates.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limita... | ansys/pyensight | src/ansys/pyensight/core/utils/adr.py | .py | 9bb89edc5452d51d | 7.52 | 10 |
# Copyright (C) 2022 - 2026 ANSYS, Inc. and/or its affiliates.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limita... | ansys/pyensight | src/ansys/pyensight/core/utils/readers.py | .py | 332b40184dad97e9 | 7.52 | 10 |
# Copyright (C) 2022 - 2026 ANSYS, Inc. and/or its affiliates.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limita... | ansys/pyensight | src/ansys/pyensight/core/utils/support.py | .py | 9076e57efe1ddbce | 7.52 | 10 |
"""
Adding OIDC authentication to the project.
References: https://gitlab.com/nsf-muses/calculation-engine/-/blob/main/app/app_base/auth_backends.py
"""
from mozilla_django_oidc.auth import OIDCAuthenticationBackend
from django.conf import settings
from django.core.exceptions import ObjectDoesNotExist
import u... | scimma/blast | app/app/auth_backend.py | .py | caef0974ec417f75 | 7.45 | 7 |
import os
import sys
from pathlib import Path
import json
# TODO: Redundant definitions of global config variables should be avoided, but we
# cannot currently run in a Django shell *before* initializing the data files.
# from django.conf import settings
CUTOUT_ROOT = os.getenv("CUTOUT_ROOT", "/data/cutout_cdn")
... | scimma/blast | app/entrypoints/initialize_data.py | .py | 28e32d2b4cfd9cee | 7.45 | 7 |
from astropy.coordinates import Angle
from astropy.coordinates import SkyCoord
from astropy.io.votable import parse
from astroquery.vizier import Vizier
def catalog_photometry(position, catalog, search_radius=Angle(1.0, unit="arcsec")):
"""
Downloads catalog photometry for the closest match within a given sea... | scimma/blast | app/host/catalog_photometry.py | .py | d7976863342efed0 | 7.45 | 7 |
import functools
import re
from django.utils import timezone
from django.conf import settings
# from .models import ExternalResourceCall
from .models import UsageMetricsLog
import json
from textwrap import shorten
# def log_resource_call(resource_name):
# """
# Decorator which saves metadata about a call to ... | scimma/blast | app/host/decorators.py | .py | 81992af335459cc2 | 7.45 | 7 |
#!/usr/bin/python3
# -*- coding: utf-8 -*-
import argparse
import logging
import re
import sys
from typing import Optional
import pymysql
from pymysql.cursors import Cursor
import yaml
BATCH_SIZE = 300
def extract_dbnames(qtext: str, qdb: str, regex, db_regex) -> Optional[str]:
"""
Attempt to determine th... | toolforge/quarry | maintenance/multiinstance_migration.py | .py | 57e8e597fdacec53 | 7.66 | 20 |
from sqlalchemy import Column, Integer, Unicode, ForeignKey, DateTime
from sqlalchemy.orm import relationship
from .base import Base
from .query import Query # noqa
class QueryRevision(Base):
__tablename__ = "query_revision"
id = Column(Integer, primary_key=True)
text = Column(Unicode(4096))
query_d... | toolforge/quarry | quarry/web/models/queryrevision.py | .py | d41d295f6455199e | 7.66 | 20 |
class RangeBasedPagination(object):
"""
Generic range based pagination.
"""
def __init__(
self,
queryset,
page_key,
limit,
base_url,
referrer_url=None,
get_params={},
):
"""
Instantiate RangeBasedPagination.
Args:
... | toolforge/quarry | quarry/web/utils/pagination.py | .py | 6349a6a90abb2353 | 7.66 | 20 |
from datetime import datetime, timedelta
from flask import Blueprint
templatehelpers = Blueprint("templatehelpers", __name__)
def get_pretty_delay(diff: timedelta, suffix="", default="just now"):
"""
Returns string representing "time since" e.g.
3 days ago, 5 hours ago etc.
From http://flask.pocoo.o... | toolforge/quarry | quarry/web/webhelpers.py | .py | 392f45701b0bb9fe | 7.66 | 20 |
import pytest
from mock_alchemy.mocking import UnifiedAlchemyMagicMock
# @pytest.mark.usefixtures([mocker, client])
class TestLogin:
@pytest.fixture(autouse=True)
def setup_method(self, mocker, client):
# mock_alchemy is not great at understanding post data;
# to work around we use string ID... | toolforge/quarry | tests/test_login.py | .py | 2efd4adf38936f66 | 7.16 | 20 |
from datetime import datetime
import json
import pytest
from mock_alchemy.mocking import UnifiedAlchemyMagicMock
from quarry.web.models.query import Query
from quarry.web.models.queryrevision import QueryRevision
from quarry.web.models.queryrun import QueryRun
from quarry.web.models.user import User
class TestQuery... | toolforge/quarry | tests/test_query.py | .py | d649858bcb907768 | 7.16 | 20 |
from datetime import datetime
import pytest
from mock_alchemy.mocking import UnifiedAlchemyMagicMock
from quarry.web.models.query import Query
from quarry.web.models.star import Star
from quarry.web.models.queryrevision import QueryRevision
from quarry.web.models.queryrun import QueryRun
from quarry.web.models.user i... | toolforge/quarry | tests/test_results.py | .py | 41b2d60195c10a12 | 7.16 | 20 |
from datetime import datetime
import json
import pytest
from mock_alchemy.mocking import UnifiedAlchemyMagicMock
from quarry.web.models.query import Query
from quarry.web.models.queryrevision import QueryRevision
from quarry.web.models.queryrun import QueryRun
from quarry.web.models.user import User
# @pytest.mark.... | toolforge/quarry | tests/test_run.py | .py | 6a40adc53850463a | 7.16 | 20 |
from datetime import datetime
import pytest
from sqlalchemy import func
from mock_alchemy.mocking import UnifiedAlchemyMagicMock
from quarry.web.models.query import Query
from quarry.web.models.star import Star
from quarry.web.models.queryrevision import QueryRevision
from quarry.web.models.queryrun import QueryRun
f... | toolforge/quarry | tests/test_user.py | .py | 9e537f775ae24470 | 7.16 | 20 |
import itertools
import threading
from abc import ABC, abstractmethod
from collections.abc import Iterator
from typing import Any, NoReturn
import requests
from bigc.exceptions import (
BadGatewayError,
BigCommerceException,
BigCommerceNetworkError,
GatewayTimeoutError,
InternalServerError,
Se... | MedShift/bigc | src/bigc/api_client.py | .py | 770caadcf9fdbdd5 | 7.5 | 9 |
from __future__ import annotations
import inspect
from typing import Any, ClassVar
_status_code_exc_class_map: dict[int, type[BigCommerceException]] = {}
class BigCommerceException(Exception):
"""Base exception class for BigCommerce API errors."""
DEFAULT_MESSAGE: ClassVar[str] = 'Request to BigCommerce fa... | MedShift/bigc | src/bigc/exceptions.py | .py | 55217ddd01b240aa | 7.5 | 9 |
from collections.abc import Iterator
from typing import Any
from bigc.api_client import BigCommerceV2APIClient
class BigCommerceCurrenciesV2API:
def __init__(self, api: BigCommerceV2APIClient):
self._api = api
def all(
self,
*,
params: dict[str, Any] | None = None,
ti... | MedShift/bigc | src/bigc/resources/currencies_v2.py | .py | d52c1a81a5e290ee | 7.5 | 9 |
from collections.abc import Iterator
from typing import Any
from bigc.api_client import BigCommerceV3APIClient
from bigc.exceptions import DoesNotExistError
class BigCommerceOrdersV3API:
def __init__(self, api: BigCommerceV3APIClient):
self._api = api
def get_refund_quote(
self,
orde... | MedShift/bigc | src/bigc/resources/orders_v3.py | .py | 777a1609fdb93a47 | 7.5 | 9 |
from collections.abc import Iterator
from typing import Any
from bigc.api_client import BigCommerceV3APIClient
class BigCommercePricingV3API:
def __init__(self, api: BigCommerceV3APIClient):
self._api = api
def get_pricing(
self,
data: dict[str, Any],
*,
timeout: floa... | MedShift/bigc | src/bigc/resources/pricing_v3.py | .py | 75802dbdb0c1cbe9 | 7.5 | 9 |
import atexit
import logging
import os
import re
import sys
import textwrap
from functools import lru_cache
from importlib.metadata import EntryPoint, entry_points
from importlib.util import find_spec
from typing import Any, Callable, Dict, Iterable, List, Literal, Optional, Union
from semantic_version import SimpleSp... | SpeysideHEP/spey | src/spey/__init__.py | .py | 94a7c76d7e6bb3de | 7.52 | 10 |
"""Configuration class for Statistical Models"""
import copy
from dataclasses import dataclass
from typing import Dict, List, Optional, Tuple, Union
@dataclass
class ModelConfig:
r"""
Container to hold certain properties of the backend and statistical model.
This will ensure the consistency of the comput... | SpeysideHEP/spey | src/spey/base/model_config.py | .py | 9d54ff0edba492f7 | 7.52 | 10 |
"""Tools for computing confidence level and pvalues at the asymptotic limit"""
from typing import List, Tuple
from .distributions import AsymptoticTestStatisticsDistribution
from .utils import expected_pvalues, pvalues
__all__ = ["compute_asymptotic_confidence_level"]
def __dir__():
return __all__
def comput... | SpeysideHEP/spey | src/spey/hypothesis_testing/asymptotic_calculator.py | .py | 6c2df0da6525d931 | 8.02 | 10 |
"""
Test statistic distributions
Similar implementation can be found in https://github.com/scikit-hep/pyhf/blob/main/src/pyhf/infer/calculators.py
"""
import numpy as np
from scipy.stats import norm
__all__ = ["AsymptoticTestStatisticsDistribution", "EmpricTestStatisticsDistribution"]
def __dir__():
return __a... | SpeysideHEP/spey | src/spey/hypothesis_testing/distributions.py | .py | 334b810cba4c179c | 7.02 | 10 |
"""Functions for computation of test statistic"""
import logging
import warnings
from typing import Callable, Tuple
import numpy as np
from spey.system.exceptions import AsimovTestStatZero, UnknownTestStatistics
__all__ = ["qmu", "qmu_tilde", "q0", "get_test_statistic", "compute_teststatistics"]
log = logging.getL... | SpeysideHEP/spey | src/spey/hypothesis_testing/test_statistics.py | .py | b4f37d1ed659c073 | 7.02 | 10 |
from typing import List, Text, Tuple
import numpy as np
from .distributions import EmpricTestStatisticsDistribution
from .utils import expected_pvalues, pvalues
__all__ = ["compute_toy_confidence_level"]
def __dir__():
return __all__
def compute_toy_confidence_level(
signal_like_test_statistic: List[floa... | SpeysideHEP/spey | src/spey/hypothesis_testing/toy_calculator.py | .py | b5872cb28ddaa631 | 8.02 | 10 |
"""Tools for computing upper limit on parameter of interest"""
import logging
from collections import deque
from functools import partial
from typing import Callable, List, Literal, Optional, Tuple, Union
import numpy as np
import scipy
from spey.hypothesis_testing.test_statistics import compute_teststatistics
from ... | SpeysideHEP/spey | src/spey/hypothesis_testing/upper_limits.py | .py | 5511261a049c1d09 | 8.02 | 10 |
"""
Routines for computing pvalues
Similar implementation can be found in https://github.com/scikit-hep/pyhf/blob/main/src/pyhf/infer/calculators.py
"""
import warnings
from typing import List, Tuple, Union
import numpy as np
from .distributions import (
AsymptoticTestStatisticsDistribution,
EmpricTestStati... | SpeysideHEP/spey | src/spey/hypothesis_testing/utils.py | .py | ba3cd3e4bda4eaf8 | 8.02 | 10 |
import logging
from dataclasses import dataclass
from typing import Any, List, Dict
from .core import fit
__all__ = ["fit"]
log = logging.getLogger("Spey")
@dataclass
class ValidateOpts:
"""
Whitelist filter for optimiser keyword options.
Used by :mod:`spey.optimizer.scipy_tools` and
:mod:`spey.op... | SpeysideHEP/spey | src/spey/optimizer/__init__.py | .py | 01d30624f6de0e57 | 7.52 | 10 |
"""Optimisation tools based on scipy"""
import logging
import warnings
from typing import Callable, Dict, List, Tuple
import numpy as np
import scipy
from . import ValidateOpts
# pylint: disable=W1201, W1203, R0913
log = logging.getLogger("Spey")
_scipy_opts = ValidateOpts(
opt_list=["method", "maxiter", "dis... | SpeysideHEP/spey | src/spey/optimizer/scipy_tools.py | .py | bc00213e8a6145fb | 7.52 | 10 |
"""Logging style for spey"""
import logging
import sys
from contextlib import contextmanager
# pylint: disable=C0103
class ColoredFormatter(logging.Formatter):
"""Coloured logging formatter for spey.
Wraps the standard :class:`logging.Formatter` with ANSI escape sequences
keyed on log level so spey outp... | SpeysideHEP/spey | src/spey/system/logger.py | .py | a5745ad5662ab90c | 7.52 | 10 |
import json
import logging
import pathlib
from datetime import datetime, timezone
from platform import python_version
from typing import Literal
import requests
from semantic_version import SimpleSpec, Version
from spey._version import __version__
log = logging.getLogger("Spey")
__all__ = ["get_bibtex", "check_upda... | SpeysideHEP/spey | src/spey/system/webutils.py | .py | a37a3dc53575ab41 | 7.52 | 10 |
from enum import Enum, auto
__all__ = ["ExpectationType"]
# pylint: disable=C0103
class ExpectationType(Enum):
"""
Expectation type has been used to determine the nature of the statistical model through out the package.
It consists of three main arguments:
* :obj:`~spey.ExpectationType.observed... | SpeysideHEP/spey | src/spey/utils.py | .py | 85e4e206174e143b | 7.52 | 10 |
import types
import numpy as np
import pytest
from spey.base import backend_base
class SimpleBackend(backend_base.BackendBase):
"""Minimal concrete BackendBase implementation for testing defaults."""
def config(self, allow_negative_signal: bool = True, poi_upper_bound: float = 10.0):
return types.S... | SpeysideHEP/spey | tests/test_backend_base.py | .py | 1632b802be035a68 | 7.02 | 10 |
"""Test asymptotic calculator"""
import numpy as np
from spey.hypothesis_testing.asymptotic_calculator import (
compute_asymptotic_confidence_level,
)
from spey.hypothesis_testing.toy_calculator import compute_toy_confidence_level
def test_compute_asymptotic_confidence_level():
"""Test asymptotic CL compute... | SpeysideHEP/spey | tests/test_cls_computer.py | .py | db710910182c6e1a | 8.02 | 10 |
import numpy as np
import types
import pytest
from spey.optimizer import core as core_mod
class FakeModelConfig:
def __init__(self, suggested_init, poi_index=0, suggested_fixed=None):
self.suggested_init = list(suggested_init)
self.poi_index = poi_index
self.suggested_fixed = (
... | SpeysideHEP/spey | tests/test_core_fit.py | .py | fb60df07309feb42 | 7.02 | 10 |
import numpy as onp
import math
import pytest
from spey.backends.distributions import (
Poisson,
Normal,
MultivariateNormal,
MainModel,
ConstraintModel,
MixtureModel,
)
def test_poisson_expected_and_logprob_and_sample():
# negative loc gets clipped to small positive value
p = Poisson... | SpeysideHEP/spey | tests/test_distributions.py | .py | f72cb659e18cbae2 | 7.02 | 10 |
"""Example: the `numeric` subpackage for large-scale / numerical work.
Install with `pip install 'gale-shapley-algorithm[numeric]'` to pull in numpy.
This demonstrates:
- Running Gale-Shapley on int16 rank matrices (both men-optimal and women-optimal).
- Checking stability of an arbitrary matching.
- Enumeratin... | oedokumaci/gale-shapley-algorithm | examples/numeric_usage.py | .py | 929fd98225f84651 | 7.5 | 9 |
"""Pydantic request/response models for the API."""
from typing import Self
from pydantic import BaseModel, model_validator
class MatchingRequest(BaseModel):
"""Request body for matching endpoints."""
proposer_preferences: dict[str, list[str]]
responder_preferences: dict[str, list[str]]
@model_val... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/_api/models.py | .py | 10fbb518acfcf6d6 | 7.5 | 9 |
"""API route handlers."""
from fastapi import APIRouter
from gale_shapley_algorithm._api.models import MatchingRequest, MatchingResponse, StepsResponse
from gale_shapley_algorithm._api.step_through import _build_matching_response, run_step_through
from gale_shapley_algorithm.matching import _build_algorithm
from gale... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/_api/routes.py | .py | 5a6bbd30b91bac79 | 7.5 | 9 |
"""Step-through execution of the Gale-Shapley algorithm, capturing per-round state."""
from gale_shapley_algorithm._api.models import (
MatchingResponse,
ProposalAction,
RoundStep,
StepsResponse,
)
from gale_shapley_algorithm.matching import _build_algorithm
from gale_shapley_algorithm.person import Re... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/_api/step_through.py | .py | ddaf8d03992df6bc | 7.5 | 9 |
"""Command line application module for Gale-Shapley algorithm."""
import random
from typing import TYPE_CHECKING
import typer
from gale_shapley_algorithm._cli import console
from gale_shapley_algorithm._cli.display import display_preferences, display_results
from gale_shapley_algorithm._cli.prompts import (
prom... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/_cli/app.py | .py | 7cd63c174d6efeda | 7.5 | 9 |
"""Rich output formatting for the CLI."""
from typing import TYPE_CHECKING
from rich.table import Table
from gale_shapley_algorithm._cli import console
if TYPE_CHECKING:
from gale_shapley_algorithm.result import MatchingResult, StabilityResult
def display_preferences(
proposer_side: str,
responder_sid... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/_cli/display.py | .py | b1c5f091ccc7066c | 7.5 | 9 |
"""Interactive prompt functions for the CLI."""
from rich.prompt import IntPrompt, Prompt
from gale_shapley_algorithm._cli import console
def prompt_side_names() -> tuple[str, str]:
"""Prompt for proposer and responder side names.
Returns:
Tuple of (proposer_side_name, responder_side_name).
"""... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/_cli/prompts.py | .py | d2fcb6f6dc5e0c7b | 7.5 | 9 |
"""Algorithm module."""
from dataclasses import dataclass
from typing import Final
from gale_shapley_algorithm.person import Proposer, Responder
from gale_shapley_algorithm.result import MatchingResult
@dataclass(slots=True)
class Algorithm:
"""Gale-Shapley Algorithm class.
Uses slots for memory efficiency... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/algorithm.py | .py | 490e223e0ab11707 | 7.5 | 9 |
"""Convenience function for creating matchings."""
from gale_shapley_algorithm.algorithm import Algorithm
from gale_shapley_algorithm.person import Proposer, Responder
from gale_shapley_algorithm.result import MatchingResult
def _build_algorithm(
proposer_preferences: dict[str, list[str]],
responder_preferen... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/matching.py | .py | 6ce01632a28ab4ae | 7.5 | 9 |
"""Numpy Gale-Shapley deferred acceptance on rank matrices."""
from __future__ import annotations
from collections.abc import Callable, Sequence
from dataclasses import dataclass
from typing import TYPE_CHECKING
try:
import numpy as np
except ImportError as e: # pragma: no cover
raise ImportError(
"... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/numeric/gs.py | .py | 8675f69b62acbf08 | 7.5 | 9 |
"""Vectorized stability checks for rank-matrix matchings."""
from __future__ import annotations
from typing import TYPE_CHECKING
try:
import numpy as np
except ImportError as e: # pragma: no cover
raise ImportError(
"The `numeric` subpackage requires numpy. Install with `pip install gale-shapley-alg... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/numeric/stability.py | .py | 5fc994a2f01077c4 | 7.5 | 9 |
"""Person module.
Creates the units in the matching environment.
Person class is also the base class for Proposer and Responder classes.
"""
from __future__ import annotations
class Person:
"""Person class, base class for Proposer and Responder."""
def __init__(self, name: str, side: str) -> None:
... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/person.py | .py | 67a6d8446fdf9f1d | 7.5 | 9 |
"""Result types for the Gale-Shapley algorithm."""
from dataclasses import dataclass
@dataclass(frozen=True)
class MatchingResult:
"""Result of running the Gale-Shapley algorithm."""
rounds: int
matches: dict[str, str]
unmatched: list[str]
self_matches: list[str]
all_matched: bool
@datacla... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/result.py | .py | aeb1e8c7ceaf380f | 7.5 | 9 |
"""Stability analysis for matchings."""
from gale_shapley_algorithm.algorithm import Algorithm
from gale_shapley_algorithm.person import Proposer, Responder
from gale_shapley_algorithm.result import StabilityResult
def is_individually_rational(proposers: list[Proposer], responders: list[Responder]) -> bool:
"""C... | oedokumaci/gale-shapley-algorithm | src/gale_shapley_algorithm/stability.py | .py | d358a245b2873ca2 | 7.5 | 9 |
"""Tests for the algorithm module."""
from gale_shapley_algorithm.algorithm import Algorithm
from gale_shapley_algorithm.person import Proposer, Responder
from gale_shapley_algorithm.result import MatchingResult
class TestAlgorithmProperties:
"""Tests for Algorithm properties."""
def test_persons_property(
... | oedokumaci/gale-shapley-algorithm | tests/algorithm_test.py | .py | 42c5d5895a904a5c | 7 | 9 |
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