text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
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from specula import cpuArray
from specula.base_data_obj import BaseDataObj
from astropy.io import fits
def cut_modes(matrix, start_mode=None, nmodes=None, idx_modes=None, modes_on_first_axis=True):
"""
Cut the an influence function (or an inverse one) to a subset of modes.
Parameters
----------
... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/ifunc_inv.py | .py | 0e0f5f9e3a51a1e2 | 8.02 | 10 |
from seeing.integrator import evaluateFormula, cpulib
from symao.turbolence import createTurbolenceFormulary, ft_phase_screen0
from specula.base_data_obj import BaseDataObj
from specula import ASEC2RAD, RAD2ASEC, cpuArray, np
turbolenceFormulas = createTurbolenceFormulary()
def seeing_to_r0(seeing, wvl=500.e-9):
... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/infinite_phase_screen.py | .py | 605b8e89d400cfdd | 8.02 | 10 |
from astropy.io import fits
from specula import cpuArray
from specula.base_data_obj import BaseDataObj
class Intensity(BaseDataObj):
"""
Intensity field data object.
"""
def __init__(self,
dimx: int,
dimy: int,
target_device_idx: int=None,
... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/intensity.py | .py | 5ca608d1b0a1492f | 8.02 | 10 |
from astropy.io import fits
from specula import cpuArray
from specula.data_objects.electric_field import ElectricField
class Layer(ElectricField):
"""
Layer data object.
This object represents a layer in the atmosphere for wavefront propagation simulations.
It inherits from the ElectricField class and... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/layer.py | .py | 180d27f0070e289d | 8.02 | 10 |
import numpy as np
from astropy.io import fits
from specula.lib.make_xy import make_xy
from specula.base_data_obj import BaseDataObj
class Lenslet(BaseDataObj):
"""
Lenslet data object.
This class holds the information about the lenslet array, such as the number of lenses
and their positions.
""... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/lenslet.py | .py | d185afe05fe4045f | 8.02 | 10 |
from astropy.io import fits
from specula import cpuArray
from specula.data_objects.ifunc_inv import cut_modes
from specula.base_data_obj import BaseDataObj
class M2C(BaseDataObj):
"""
Modal to Command (M2C) matrix data object.
This class holds the M2C matrix, which is used to convert modal coefficients ... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/m2c.py | .py | 605e689dfb754eb4 | 8.02 | 10 |
from astropy.io import fits
from specula import cpuArray
from specula.base_data_obj import BaseDataObj
class Phasescreen(BaseDataObj):
"""
Phasescreen field data object.
"""
def __init__(self,
dimx: int,
dimy: int,
L0: float,
seed:... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/phasescreen.py | .py | d4cd224f0e3b9b91 | 8.02 | 10 |
from astropy.io import fits
from specula import cpuArray
from specula.base_data_obj import BaseDataObj
class Pixels(BaseDataObj):
"""
Pixels data object.
Holds a 2d array of pixels, which can be signed or unsigned.
The number of bits per pixel can be set, up to 64 bits.
"""
def __init__(self,... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/pixels.py | .py | 4eed0afc554cfbfb | 8.02 | 10 |
import numpy as np
from astropy.io import fits
from specula.base_data_obj import BaseDataObj
from specula import cpuArray
class PupData(BaseDataObj):
"""
Pupil data object.
This class holds the information about the pupils of a Pyramid WFS (or a Zernike WFS).
PupData includes an ind_pup array with the... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/pupdata.py | .py | ab033a31cf558a9c | 8.02 | 10 |
import warnings
from astropy.io import fits
from specula.data_objects.layer import Layer
from specula.lib.make_mask import make_mask
from specula.data_objects.simul_params import SimulParams
from specula import cpuArray
class Pupilstop(Layer):
"""
Pupil stop data object.
This class holds the information... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/pupilstop.py | .py | 7657a6a178577dd0 | 8.02 | 10 |
import numpy as np
from astropy.io import fits
from specula import cpuArray
from specula.base_data_obj import BaseDataObj
class Recmat(BaseDataObj):
"""
Reconstruction matrix data object.
This class holds the information about the reconstruction matrix,
which maps slopes to modes. The reconstruction... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/recmat.py | .py | addb69811616e351 | 8.02 | 10 |
from specula.base_data_obj import BaseDataObj
from typing import List
class SimulParams(BaseDataObj):
"""
Simulation Parameters data object.
This class holds the parameters of the simulation, such as pixel size,
time step, total time, zenith angle, etc.
"""
def __init__(self,
p... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/simul_params.py | .py | ae6a85260f959356 | 8.02 | 10 |
from astropy.io import fits
from specula import cpuArray
from specula.base_data_obj import BaseDataObj
from specula.base_value import BaseValue
class Slopes(BaseDataObj):
"""
Slopes data object.
Holds a slopes vector, which can be interleaved (XYXYXY...) or not (XXX...YYY...).
X and Y slopes can be a... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/slopes.py | .py | 814fe9533b236afb | 8.02 | 10 |
import numpy as np
from astropy.io import fits
from specula.base_data_obj import BaseDataObj
from specula.lib.n_phot import n_phot
from specula import ASEC2RAD
degree2rad = np.pi / 180.
class Source(BaseDataObj):
"""
Source data object.
Holds the properties of a source, such as polar coordinates, magnit... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/source.py | .py | 3233e82ea19bce68 | 8.02 | 10 |
import os
from astropy.io import fits
from specula import cpuArray
from specula.base_data_obj import BaseDataObj
class SpatioTempArray(BaseDataObj):
"""
Spatio-temporal array data object.
This class holds a multi-dimensional spatio-temporal array with an associated time vector.
Input arrays can have ... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/spatio_temp_array.py | .py | f98cb402a8535a65 | 8.02 | 10 |
import math
import numpy as np
from astropy.io import fits
from specula import cpuArray
from specula.base_data_obj import BaseDataObj
class SubapData(BaseDataObj):
"""
Subaperture data object.
This class holds the information about the subapertures, i.e. the indices of the pixels
belonging to each s... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/subap_data.py | .py | a42799e5013f7c22 | 8.02 | 10 |
from astropy.io import fits
from specula import cpuArray
from specula.base_data_obj import BaseDataObj
class TimeHistory(BaseDataObj):
"""
Time history data object.
This class holds the time history of a variable, such as the seeing value, during the simulation.
The time history is stored as a 1D ar... | ArcetriAdaptiveOptics/SPECULA | specula/data_objects/time_history.py | .py | b11a45b4b74d4750 | 8.02 | 10 |
import matplotlib.pyplot as plt
from specula.scalar_values import IntValue
from specula.base_processing_obj import BaseProcessingObj
from specula.base_processing_obj import OutputDesc
def runningOnNotebook():
try:
from IPython import get_ipython
return get_ipython() is not None and 'IPKernelApp' i... | ArcetriAdaptiveOptics/SPECULA | specula/display/base_display.py | .py | 8eea9253b668d220 | 8.02 | 10 |
import matplotlib
import numpy as np
matplotlib.use('Agg') # Memory backend, no GUI
from matplotlib.figure import Figure
dataplotter_cache = {}
class DataPlotter():
'''
Plot any kind of data in a memory backend
'''
def __init__(self, disp_factor=1, histlen=200, wsize=(400, 300), yrange=(-10, 10), ti... | ArcetriAdaptiveOptics/SPECULA | specula/display/data_plotter.py | .py | bea5384c25bdcc1f | 8.02 | 10 |
import numpy as np
from specula import cpuArray
from specula.display.base_display import BaseDisplay
from specula.connections import InputValue
from specula.data_objects.electric_field import ElectricField
from symao.turbolence import ft_ft2
class DoublePhaseDisplay(BaseDisplay):
def __init__(self,
... | ArcetriAdaptiveOptics/SPECULA | specula/display/double_phase_display.py | .py | c0e22721bcfdde8b | 8.02 | 10 |
import numpy as np
from specula.display.base_display import BaseDisplay
from specula.connections import InputValue
from specula.base_value import BaseValue
from specula import cpuArray
class ModesDisplay(BaseDisplay):
def __init__(self,
title='Modes Display',
figsize=(6, 3),
... | ArcetriAdaptiveOptics/SPECULA | specula/display/modes_display.py | .py | f4f28bcd665d618d | 8.02 | 10 |
import numpy as np
from specula import cpuArray
from specula.display.base_display import BaseDisplay
from specula.connections import InputValue
from specula.data_objects.electric_field import ElectricField
class PhaseDisplay(BaseDisplay):
def __init__(self,
title='Phase Display',
... | ArcetriAdaptiveOptics/SPECULA | specula/display/phase_display.py | .py | d505f9edade88c10 | 8.02 | 10 |
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.colors as mcolors
from specula import xp
from specula import cpuArray
from specula.display.base_display import BaseDisplay
from specula.connections import InputValue
from specula.data_objects.pixels import Pixels
from specula.data_objects.subap_dat... | ArcetriAdaptiveOptics/SPECULA | specula/display/pixels_display.py | .py | d27ef48ae7e4c15d | 8.02 | 10 |
import numpy as np
import matplotlib.colors as mcolors
from specula import cpuArray
from specula.display.base_display import BaseDisplay
from specula.connections import InputValue
from specula.base_value import BaseValue
class PsfDisplay(BaseDisplay):
def __init__(self,
title='PSF Display',
... | ArcetriAdaptiveOptics/SPECULA | specula/display/psf_display.py | .py | cc73f601322716d1 | 8.02 | 10 |
"""Produce the public OpenAPI document served at docs.rapidata.ai/openapi.json.
The combined spec under ``openapi/schemas/`` is the contract the SDK is generated
from, but it carries the internal ``rabbitdata.ch`` host and an inaccurate title.
Rewrite those to the public ``rapidata.ai`` host (which already serves the ... | RapidataAI/rapidata-python-sdk | scripts/build_public_openapi.py | .py | c1959fc82a4e97f8 | 7.63 | 17 |
"""
Visualization backend for Pyroelectricity measurements using the Keithley 6517B.
Handles real-time data plotting and formatting.
"""
import pandas as pd
import matplotlib.pyplot as plt
from matplotlib.animation import FuncAnimation
import os
import tkinter
from tkinter import filedialog
def select_file():
# I... | prathameshnium/PICA-Python-Instrument-Control-and-Automation | pica/keithley/k6517b/Pyroelectricity/Instrument_Control/PyroDataVisualization_Simple_Instrument_Control.py | .py | 9973d1c76733aa7c | 7.56 | 12 |
#!/usr/bin/env python3
"""Pre-sync hook that aborts the sync while a named process is running.
Syncing while the Unreal editor is open lets p4 replace assets the editor
still has loaded, so the editor keeps working against files that no longer
match what is on disk. This hook blocks the sync until it is closed.
Insta... | neoboid/git-p4son | examples/hooks/pre-sync/block-while-running.py | .py | feadf177942ff1fc | 7.5 | 9 |
"""
Changelist alias utilities for git-p4son.
Stores named aliases for changelist numbers in .git-p4son/changelists/<name>.
"""
import os
import re
from . import CONFIG_DIR
from .log import log
RESERVED_KEYWORDS = frozenset({'last-synced', 'head', 'branch'})
# Allowed characters: ASCII letters, digits, hyphen, un... | neoboid/git-p4son | git_p4son/changelist_store.py | .py | 13c18305a0a8f9ce | 7.5 | 9 |
"""
Configuration management for git-p4son.
Reads and writes per-repo config stored in .git-p4son/config.toml.
"""
import os
import re
import tomllib
from . import CONFIG_DIR
_BARE_KEY_RE = re.compile(r'^[A-Za-z0-9_-]+$')
# Placeholder allowed in a stored depot root, substituted with the live
# Perforce client (wo... | neoboid/git-p4son | git_p4son/config.py | .py | ea0d5eea76db8885 | 7.5 | 9 |
"""User hook discovery and execution."""
import os
import sys
from pathlib import Path
from . import CONFIG_DIR
from .common import RunResult, run
from .config import load_config
from .log import log
DEFAULT_WINDOWS_ASSOCIATIONS: dict[str, list[str]] = {
'.ps1': [
'powershell.exe', '-NoProfile', '-Execut... | neoboid/git-p4son | git_p4son/hooks.py | .py | 57af090bf84ae7b1 | 7.5 | 9 |
"""
Init command implementation for git-p4son.
Sets up a new git repository inside a Perforce workspace with an initial
commit containing .gitignore.
"""
import argparse
import os
import shutil
from .common import CommandError, run, run_with_output
from .config import (
WORKSPACE_PLACEHOLDER,
expand_depot_ro... | neoboid/git-p4son | git_p4son/init.py | .py | dde2f1dfbdac3fa7 | 7.5 | 9 |
"""
List-changes command implementation for git-p4son.
"""
import argparse
from .git import get_commit_subjects_since
from .log import log
def get_enumerated_commit_lines_since(base_branch: str, workspace_dir: str, start_number: int = 1) -> list[str]:
"""Get enumerated commit lines from git log since base branch... | neoboid/git-p4son | git_p4son/list_changes.py | .py | 7f8262b8035286d0 | 7.5 | 9 |
"""
Structured output module for git-p4son.
All user-facing output goes through the module-level `log` singleton.
This centralises formatting, verbosity filtering, and future color support.
"""
import shutil
import sys
import threading
from datetime import timedelta
# Heading prefix — single constant, easy to change... | neoboid/git-p4son | git_p4son/log.py | .py | 78fdc2d006b12030 | 7.5 | 9 |
"""
Review command implementation for git-p4son.
Automates the interactive rebase workflow by generating a rebase todo file
with exec lines that run git p4son new/update for each commit.
"""
import argparse
import os
import shlex
import subprocess
from . import CONFIG_DIR
from .changelist_store import alias_exists, v... | neoboid/git-p4son | git_p4son/review.py | .py | 7bfa225a66ca0e63 | 7.5 | 9 |
"""
Local, per-user state for git-p4son.
Stored in .git-p4son/state.toml, which is kept out of version control (unlike
config.toml, which carries shared repo setup). State here reflects a single
user's workspace and preferences, e.g. dismissed warnings.
"""
import os
from . import CONFIG_DIR
from .config import load... | neoboid/git-p4son | git_p4son/state.py | .py | 2ee3d4d31406c129 | 7.5 | 9 |
#!/usr/bin/env python3
"""Bump the version of git-p4son.
Two-step workflow:
1. bump-version.py [patch|minor|major] — bump version files, generate changelog
2. (edit CHANGELOG.md if desired)
3. bump-version.py --finalize — commit and tag
"""
import argparse
import re
import subprocess
import sys
from... | neoboid/git-p4son | scripts/bump-version.py | .py | 93d361617efaeae1 | 7.5 | 9 |
"""Shared test helpers for git_p4son tests."""
from git_p4son.common import RunResult
def make_run_result(returncode=0, stdout=None, stderr=None, elapsed=None):
"""Factory for RunResult objects.
Args:
returncode: Process return code (default 0).
stdout: List of stdout lines (default empty).
... | neoboid/git-p4son | tests/helpers.py | .py | 67b6e74f5146e7b6 | 8 | 9 |
"""Shared CLI parsing helpers for variable and fallback definitions.
Used by both ``ref register`` and ``model register`` commands.
"""
from __future__ import annotations
import shlex
from typing import Any
import click
from openbench.util.names import (
AmbiguousNameError,
get_mapping_key_case_insensitive... | zhongwangwei/OpenBench | src/openbench/cli/_parsing.py | .py | 497d8faaa3a1feaf | 7.59 | 14 |
"""Shared navigation helpers for interactive CLI workflows."""
from __future__ import annotations
from collections.abc import Callable, Sequence
from typing import Any
import click
class BackRequested(Exception):
"""Return control to the previous interactive step."""
class _BackAwareType(click.ParamType):
... | zhongwangwei/OpenBench | src/openbench/cli/_wizard.py | .py | f66cf1ec89ca3f88 | 7.59 | 14 |
"""openbench cache commands."""
from __future__ import annotations
import json
from pathlib import Path
import click
def _format_bytes(size: int) -> str:
value = float(size)
for unit in ("B", "KiB", "MiB", "GiB"):
if value < 1024 or unit == "GiB":
return f"{value:.1f} {unit}" if unit !=... | zhongwangwei/OpenBench | src/openbench/cli/cache.py | .py | f109b3e5c47079cf | 7.59 | 14 |
"""openbench ref commands."""
from pathlib import Path
import click
from openbench.cli import _display, _optimize, _profile_rescue, _ref_commands, _register, _scan, _scan_support
from openbench.cli._options import TIM_RES_TYPE, expand_existing_directory, expand_path
from openbench.cli._parsing import FALLBACK_OPTION... | zhongwangwei/OpenBench | src/openbench/cli/data.py | .py | abae0a7dc321552d | 7.59 | 14 |
"""OpenBench CLI entry point.
Uses lazy command loading to avoid importing all submodules at startup.
"""
import importlib
import click
from openbench import __version__
class LazyGroup(click.Group):
"""Click group that lazily loads subcommands on first use."""
COMMAND_MAP = {
"run": "openbench.c... | zhongwangwei/OpenBench | src/openbench/cli/main.py | .py | 2cd38df9bd43bf45 | 7.59 | 14 |
"""``openbench registry`` — inspect and re-sparse the user registry overlay.
The user overlay (``~/.openbench/...``) deep-merges on top of the bundled
catalog and should contain only sparse deltas. A bloated overlay (e.g. a legacy
full snapshot) silently shadows bundled fixes. These commands make that visible
and let ... | zhongwangwei/OpenBench | src/openbench/cli/registry_cmd.py | .py | 9c1d2a9459c1d788 | 7.59 | 14 |
"""OpenBench configuration schema defined as dataclasses.
Each section of openbench.yaml maps to a dataclass with typed fields
and sensible defaults. The top-level OpenBenchConfig holds everything.
"""
from __future__ import annotations
from dataclasses import dataclass, field
from pathlib import PurePosixPath, Pure... | zhongwangwei/OpenBench | src/openbench/config/schema.py | .py | dd6b76574c51ecc2 | 7.59 | 14 |
"""Small persistent user settings for OpenBench CLI behavior."""
from __future__ import annotations
import os
from pathlib import Path
from tempfile import NamedTemporaryFile
from typing import Any
import yaml
SETTINGS_FILE_NAME = "settings.yaml"
USER_CONFIG_DIR_NAME = ".openbench"
def resolve_home_dir() -> Path:... | zhongwangwei/OpenBench | src/openbench/config/user_settings.py | .py | 7216dec4e122e1e9 | 7.59 | 14 |
"""Common comparison-processing helpers split out of comparison.py."""
from __future__ import annotations
import gc
import logging
import os
import sys
import xarray as xr
from joblib import Parallel
from openbench.util.netcdf import write_netcdf_atomic as _write_netcdf_atomic
def _comparison_attr(name: str, fall... | zhongwangwei/OpenBench | src/openbench/core/_comparison_common.py | .py | a36a14a564088aba | 7.59 | 14 |
# -*- coding: utf-8 -*-
"""Shared helpers for comparison processing.
Kept outside the large ``comparison.py`` orchestration class so filename,
station-alignment, and atomic-write behavior can be reviewed independently.
"""
from __future__ import annotations
from contextlib import contextmanager
import logging
import... | zhongwangwei/OpenBench | src/openbench/core/_comparison_helpers.py | .py | 88770284fd645d6e | 7.59 | 14 |
import shutil
from datetime import datetime, timezone
from enum import Enum
from pathlib import Path
from typing import Any
from loguru import logger
from luxonis_ml.nn_archive import is_nn_archive
from luxonis_ml.nn_archive.config import Config as NNArchiveConfig
from luxonis_ml.nn_archive.config_building_blocks impo... | luxonis/modelconverter | modelconverter/cli/utils.py | .py | 86c74bf91a4acf39 | 7.59 | 14 |
import re
from abc import ABC, abstractmethod
from collections.abc import Iterable
from pathlib import Path
from typing import Any, TypeAlias
import polars as pl
from loguru import logger
from modelconverter.utils import is_hubai_model_variant_available, resolve_path
Configuration: TypeAlias = dict[str, Any]
class... | luxonis/modelconverter | modelconverter/packages/base_benchmark.py | .py | c2cea50eec771bdf | 7.59 | 14 |
import os
from pathlib import Path, PurePosixPath
from typing import Final
from luxonis_ml.utils.registry import Registry
def in_docker() -> bool:
"""Whether this process runs inside a modelconverter container."""
return "IN_DOCKER" in os.environ
def get_cache_dir() -> Path:
"""Returns the hidden, auto... | luxonis/modelconverter | modelconverter/utils/constants.py | .py | fa081c26163f01d7 | 7.59 | 14 |
import os
from contextvars import ContextVar
from pathlib import Path
from luxonis_ml.utils import LuxonisFileSystem
from modelconverter.utils.constants import SHARED_DIR, in_docker
# Base directory against which relative local paths are resolved when they do
# not exist as-is. It is set to the directory of the acti... | luxonis/modelconverter | modelconverter/utils/filesystem_utils.py | .py | 7abeec20548cf83e | 7.59 | 14 |
import re
from pathlib import Path
from loguru import logger
def _normalize_underscores(s: str) -> str:
return re.sub(r"_+", "_", s)
def sanitize_net_name(name: str, with_suffix: bool = False) -> str:
"""Sanitize net name or path.
If input is a path, only sanitize the basename. If input is a name,
... | luxonis/modelconverter | modelconverter/utils/general.py | .py | 67cfb3b04dd2a27b | 7.59 | 14 |
from hubai_sdk import HubAIClient
from hubai_sdk.errors import ResourceNotFoundError
from hubai_sdk.utils.environ import environ as hubai_sdk_environ
from modelconverter.utils.environ import environ
def create_hubai_client() -> HubAIClient:
"""Create an authenticated HubAI SDK client using ModelConverter setting... | luxonis/modelconverter | modelconverter/utils/hubai_utils.py | .py | d61901613e44870a | 7.59 | 14 |
def make_default_layout(shape: list[int]) -> str:
"""Creates a default layout for the given shape.
Tries to guess most common layouts for the given shape pattern.
Otherwise, uses the first free letter of the alphabet for each dimension.
Example:
>>> make_default_layout([1, 3, 256, 256])
... | luxonis/modelconverter | modelconverter/utils/layout.py | .py | c5b948d33c869a92 | 7.59 | 14 |
from collections.abc import Iterable, Iterator
from pathlib import Path
import ml_dtypes
import numpy as np
import onnx
from onnx.external_data_helper import ExternalDataInfo, uses_external_data
def ensure_onnx_helper_compatibility() -> None:
helper = onnx.helper
def _convert_scalar(
value: float, d... | luxonis/modelconverter | modelconverter/utils/onnx_compatibility.py | .py | 4711d9d4dffd99c7 | 7.59 | 14 |
"""
orion.ack_providers.base
Abstract base class for ACK providers.
"""
from abc import ABC, abstractmethod
from typing import List, Dict, Any, Optional
class AckProvider(ABC):
"""
Abstract base class for acknowledgment providers.
Providers are responsible for retrieving and creating acknowledgments
... | cloud-bulldozer/orion | orion/ack_providers/base.py | .py | 64089907b4e3b5ce | 7.52 | 10 |
"""
orion.ack_providers.file_provider
File-based ACK provider using YAML files.
"""
import os
from typing import List, Dict, Any, Optional
import yaml
from orion.ack_providers.base import AckProvider
from orion.config import load_ack
from orion.logger import SingletonLogger
class FileAckProvider(AckProvider):
... | cloud-bulldozer/orion | orion/ack_providers/file_provider.py | .py | ba466e4ef719f544 | 7.52 | 10 |
"""Module for Generic Algorithm class"""
from abc import ABC, abstractmethod
import pandas as pd
from otava.series import Series, Metric
class Algorithm(ABC): # pylint: disable = too-many-arguments, too-many-instance-attributes
"""Generic Algorithm class for algorithm factory"""
def __init__(
self,
... | cloud-bulldozer/orion | orion/algorithms/algorithm.py | .py | 8e73923d444958d1 | 7.52 | 10 |
"""
Algorithm Factory to choose avaiable algorithms
"""
import pandas as pd
import orion.constants as cnsts
from .edivisive import EDivisive
from .edivisive import OrigEDivisive
from .isolationforest import IsolationForestWeightedMean
from .cmr import CMR
class AlgorithmFactory: # pylint: disable= too-few-public-meth... | cloud-bulldozer/orion | orion/algorithms/algorithmFactory.py | .py | fedd0066480e872b | 7.52 | 10 |
"""Original E-Divisive Algorithm from apache_otava"""
from otava.series import AnalysisOptions
from orion.algorithms.edivisive.edivisive import EDivisive
class OrigEDivisive(EDivisive):
"""Original E-Divisive algorithm variant.
Overrides the analysis options to use the original E-Divisive
changepoint de... | cloud-bulldozer/orion | orion/algorithms/edivisive/origEdivisive.py | .py | 19f9b8c9a9d203f7 | 7.52 | 10 |
"""
Logger as a common package
"""
import logging
import sys
class SingletonLogger:
"""Singleton logger to set logging at one single place
Returns:
_type_: _description_
"""
instance = {}
def __new__(cls, debug: int, name: str):
if (not cls.instance) or name not in cls.instance... | cloud-bulldozer/orion | orion/logger.py | .py | e19c2bfce67ad0d0 | 7.52 | 10 |
"""AnalysisResult dataclass and standalone utility functions."""
from dataclasses import dataclass, field
from itertools import groupby
from typing import Dict, List
import pandas as pd
from otava.series import Series, ChangePoint, ChangePointGroup
@dataclass
class AnalysisResult: # pylint: disable=too-many-instance... | cloud-bulldozer/orion | orion/pipeline/analysis_result.py | .py | 0c7a21cf15d07abb | 7.52 | 10 |
"""Formatter classes for Orion output."""
import orion.constants as cnsts
from .base import BaseFormatter
from .json_formatter import JsonFormatter
from .text_formatter import TextFormatter
from .junit_formatter import JUnitFormatter
class FormatterFactory: # pylint: disable=too-few-public-methods
"""Factory for... | cloud-bulldozer/orion | orion/pipeline/formatters/__init__.py | .py | 8bc7426527ce6764 | 7.52 | 10 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | cloud-bulldozer/orion | orion/reporting/report.py | .py | 5b319e89e7fc47e5 | 7.52 | 10 |
"""
orion.reporting.standalone
Module for generating standalone regression reports from orion JSON output files.
"""
import json
import os
from orion.logger import SingletonLogger
from .summary import print_regression_summary
# Box-drawing characters for report formatting
_BOX_TOP_LEFT = "\u2554"
_BOX_TOP_RIGHT = "... | cloud-bulldozer/orion | orion/reporting/standalone.py | .py | 596ce6c03dcb2708 | 7.52 | 10 |
"""
Regression summary formatting.
Prints changepoint details: affected metrics, PRs, and GitHub context.
Used by both the normal orion run output and the standalone --report mode.
"""
from tabulate import tabulate
def print_regression_summary(regression_data) -> None:
"""Print regression summary: affected metr... | cloud-bulldozer/orion | orion/reporting/summary.py | .py | db29f8cfd3bcca14 | 7.52 | 10 |
# pylint: disable=protected-access
"""Tests for CMR direction filtering in _analyze()."""
import pandas as pd
import pytest
from orion.algorithms.cmr.cmr import CMR
def _make_test_config():
return {
"name": "test-cmr",
"uuid_field": "uuid",
"version_field": "ocpVersion",
}
def _make... | cloud-bulldozer/orion | orion/tests/test_cmr_direction.py | .py | f4b39c923906298a | 8.02 | 10 |
"""
Test that _attach_viz_to_jira scopes attachments per PR.
The fix (main.py) calls auto_create_jira_issues once per PR and stores
results in issue_keys_by_test_pull_by_pr keyed by pr_num. Each PR's
viz files are then attached only to that PR's JIRA issues.
CodeRabbit review: https://github.com/cloud-bulldozer/orion... | cloud-bulldozer/orion | orion/tests/test_jira_viz_attachment.py | .py | e4914de5d9e36ffd | 8.02 | 10 |
"""
Gitlint extra rule to validate that the message title is of the form
"<gitmoji>(<scope>) <subject>"
"""
from __future__ import unicode_literals
import re
import requests
from gitlint.rules import CommitMessageTitle, LineRule, RuleViolation
class GitmojiTitle(LineRule):
"""
This rule will enforce that e... | suitenumerique/drive-migrator | gitlint/gitlint_emoji.py | .py | ec4dc0bfb62192d4 | 7.45 | 7 |
"""API endpoints"""
from django.core.exceptions import ValidationError
from rest_framework import exceptions as drf_exceptions
from rest_framework import views as drf_views
from rest_framework.exceptions import APIException as ExistingAPIException
from rest_framework.status import HTTP_403_FORBIDDEN
def exception_ha... | suitenumerique/drive-migrator | src/backend/core/api/__init__.py | .py | 07c8adfbcc394272 | 7.45 | 7 |
"""A JSONField for DRF to handle serialization/deserialization."""
import json
from rest_framework import serializers
class JSONField(serializers.Field):
"""
A custom field for handling JSON data.
"""
def to_representation(self, value):
"""
Convert the JSON string to a Python diction... | suitenumerique/drive-migrator | src/backend/core/api/fields.py | .py | 1fedf91ebfd94eb5 | 7.45 | 7 |
"""Available destinations endpoint."""
from rest_framework.response import Response
from rest_framework.views import APIView
from core.api.permissions import IsAuthenticated
from core.backends.destination import DestinationRegistry
class AvailableDestinationsAPIView(APIView):
"""Return the list of destinations ... | suitenumerique/drive-migrator | src/backend/core/api/views/available_destinations.py | .py | 38ea4d3d3d00ec44 | 7.45 | 7 |
# pylint: skip-file
"""Development views."""
from django.conf import settings
from django.http import Http404, HttpResponse
from core.destinations.resana.resana_backend import ResanaBackend
from core.models import Workspace
from core.sources.osmose.osmose_backend import OsmoseFolder, OsmoseManager
from ...processing.... | suitenumerique/drive-migrator | src/backend/core/api/views/dev.py | .py | 4251a0c478e3f96d | 7.45 | 7 |
from django.conf import settings
from rest_framework.permissions import IsAuthenticated
from rest_framework.response import Response
from rest_framework.views import APIView
class MigrationConfigApiView(APIView):
"""Expose migration-related settings the frontend needs to display to users."""
permission_clas... | suitenumerique/drive-migrator | src/backend/core/api/views/migration_config.py | .py | 1cdceaca66b2afb1 | 7.45 | 7 |
"""Synchronize API view."""
from rest_framework.response import Response
from rest_framework.views import APIView
from core.api import APIException
from core.api.permissions import IsAuthenticated
from core.backends.source import SourceManager
from core.models import FeatureFlag
from core.sources.resana.token_manager ... | suitenumerique/drive-migrator | src/backend/core/api/views/synchronize.py | .py | aa56a62033c98801 | 7.45 | 7 |
"""Workspaces viewsets"""
from django.forms.fields import UUIDField
from django_filters.rest_framework import DjangoFilterBackend, FilterSet
from rest_framework import viewsets
from rest_framework.decorators import action
from rest_framework.response import Response
from ...destinations.resana.resana_backend import R... | suitenumerique/drive-migrator | src/backend/core/api/views/workspaces.py | .py | 813e0b51c1cff23c | 7.45 | 7 |
from django.conf import settings
from django_celery_results.models import TaskResult
from rest_framework.response import Response
from rest_framework.views import APIView
from core.sources.osmose.serializers import WorkspaceSerializer
from ...destinations.drive.drive_backend import DriveUserTokenBackend
from ...dest... | suitenumerique/drive-migrator | src/backend/core/api/views/workspaces_process.py | .py | 965b28771059f00c | 7.45 | 7 |
from rest_framework import (
decorators,
mixins,
pagination,
viewsets,
)
from rest_framework.response import Response
from core import models
from . import permissions, serializers
class Pagination(pagination.PageNumberPagination):
"""Pagination to display no more than 100 objects per page sorte... | suitenumerique/drive-migrator | src/backend/core/api/viewsets.py | .py | 41536073b09e6be9 | 7.45 | 7 |
"""Authentication Backends for the core app."""
from datetime import timedelta
from django.core.exceptions import SuspiciousOperation
from django.utils import timezone
from django.utils.translation import gettext_lazy as _
import requests
from mozilla_django_oidc.auth import (
OIDCAuthenticationBackend as Mozill... | suitenumerique/drive-migrator | src/backend/core/authentication/backends.py | .py | 6dfdd9825330fc40 | 7.45 | 7 |
"""Authentication Views for the People core app."""
from urllib.parse import urlencode
from django.contrib import auth
from django.core.exceptions import SuspiciousOperation
from django.http import HttpResponseRedirect
from django.urls import reverse
from django.utils import crypto
from mozilla_django_oidc.utils imp... | suitenumerique/drive-migrator | src/backend/core/authentication/views.py | .py | 7c00e2a0351e4886 | 7.45 | 7 |
"""Abstract destination backend interface and destination registry."""
from abc import ABC, abstractmethod
from django.conf import settings
from django.utils.module_loading import import_string
class AbstractDestinationBackend(ABC):
"""
Contract for any platform that can receive a migrated workspace.
`... | suitenumerique/drive-migrator | src/backend/core/backends/destination.py | .py | a2a9a80314c78ed0 | 7.45 | 7 |
"""Abstract source backend interface, source data types, and source manager."""
from abc import ABC, abstractmethod
from dataclasses import dataclass, field
from django.conf import settings
from django.utils.module_loading import import_string
from core.models import Workspace
@dataclass
class SourceFile:
"""A... | suitenumerique/drive-migrator | src/backend/core/backends/source.py | .py | 5a12f43816534aba | 7.45 | 7 |
"""ArchiveDestinationBackend — wraps ArchiveManager and implements AbstractDestinationBackend."""
import csv
import os
from django.conf import settings
from django.utils.translation import gettext_lazy as _
from core.backends.destination import AbstractDestinationBackend
from core.mails_manager import MailsManager
f... | suitenumerique/drive-migrator | src/backend/core/destinations/archive/backend.py | .py | 0e8fb95f51c1ecbb | 7.45 | 7 |
"""DriveDestinationBackend — uploads a workspace to La Suite Drive."""
import csv
import os
from django.conf import settings
from django.utils.translation import gettext_lazy as _
from core.backends.destination import AbstractDestinationBackend
from core.destinations.drive.drive_backend import (
DriveServiceAcco... | suitenumerique/drive-migrator | src/backend/core/destinations/drive/backend.py | .py | b2fdfcd3cb5c7ac8 | 7.45 | 7 |
"""DriveBackend — HTTP client for La Suite Drive API."""
import logging
import time
from datetime import timedelta
from django.conf import settings
from django.utils import timezone
import requests
from celery.utils.log import get_task_logger
from requests.exceptions import ConnectionError as RequestsConnectionError... | suitenumerique/drive-migrator | src/backend/core/destinations/drive/drive_backend.py | .py | 0ac622334feb5174 | 7.45 | 7 |
"""ResanaDestinationBackend — wraps ResanaBackend and implements AbstractDestinationBackend."""
import csv
import os
from core.backends.destination import AbstractDestinationBackend
from core.destinations.resana.resana_backend import ResanaBackend
from core.models import Workspace
class ResanaDestinationBackend(Abs... | suitenumerique/drive-migrator | src/backend/core/destinations/resana/backend.py | .py | 407118061db0764f | 7.45 | 7 |
"""Symmetric encryption helpers for sensitive fields stored in the database."""
from django.conf import settings
from cryptography.fernet import Fernet
def _fernet() -> Fernet:
key = settings.OIDC_TOKENS_ENCRYPTION_KEY
return Fernet(key.encode() if isinstance(key, str) else key)
def encrypt_token(value: s... | suitenumerique/drive-migrator | src/backend/core/encryption.py | .py | c44a2b633dfff8c7 | 7.45 | 7 |
# ruff: noqa: S311
"""
Core application factories
"""
from django.conf import settings
from django.contrib.auth.hashers import make_password
import factory.fuzzy
from faker import Faker
from core import models
class UserFactory(factory.django.DjangoModelFactory):
"""A factory to random users for testing purpose... | suitenumerique/drive-migrator | src/backend/core/factories.py | .py | c32acdf656ae9bac | 7.45 | 7 |
from django.conf import settings
from django.contrib.sites.models import Site
from django.core import mail
from django.template.loader import render_to_string
from django.utils.translation import gettext_lazy as _
from celery.utils.log import get_task_logger
from core.backends.source import SourceManager
from core.mo... | suitenumerique/drive-migrator | src/backend/core/mails_manager.py | .py | 64d7a4a158dd7989 | 7.45 | 7 |
"""Command to refresh workspaces resana status via pooling jobs status"""
import sys
import time
from pathlib import Path
from django.core.management.base import BaseCommand
LIVENESS_FILE = Path("/tmp/celery_worker_heartbeat") # noqa: S108
class Command(BaseCommand):
"""Command to check the liveness of Celery"... | suitenumerique/drive-migrator | src/backend/core/management/commands/celery_liveness.py | .py | 49220020568e4ad5 | 7.45 | 7 |
"""Build optional cython modules."""
import logging
import os
from distutils.command.build_ext import build_ext
from typing import Any
_LOGGER = logging.getLogger(__name__)
try:
from setuptools import Extension
except ImportError:
from distutils.core import Extension
TO_CYTHONIZE = ["src/bleak_esphome/back... | Bluetooth-Devices/bleak-esphome | build_ext.py | .py | 0f9fb9dbf3f039fd | 7.5 | 9 |
"""Bluetooth cache for esphome."""
from __future__ import annotations
from dataclasses import dataclass, field
from typing import TYPE_CHECKING
from lru import LRU # pylint: disable=no-name-in-module
if TYPE_CHECKING:
from collections.abc import MutableMapping
from bleak.backends.service import BleakGATTS... | Bluetooth-Devices/bleak-esphome | src/bleak_esphome/backend/cache.py | .py | b82251cbf7ea1ed7 | 7.5 | 9 |
"""Bluetooth device models for esphome."""
from __future__ import annotations
import asyncio
import logging
from dataclasses import dataclass, field
from typing import TYPE_CHECKING
from bleak_retry_connector import Allocations
from bluetooth_data_tools import int_to_bluetooth_address
from .cache import ESPHomeBlue... | Bluetooth-Devices/bleak-esphome | src/bleak_esphome/backend/device.py | .py | db9c99c7b06d9ae2 | 7.5 | 9 |
"""Bluetooth scanner for esphome."""
from __future__ import annotations
import asyncio
import logging
import math
from typing import TYPE_CHECKING, Any
from aioesphomeapi import (
APIClient,
APIConnectionError,
BluetoothLEAdvertisement,
BluetoothLERawAdvertisementsResponse,
BluetoothScannerMode,
... | Bluetooth-Devices/bleak-esphome | src/bleak_esphome/backend/scanner.py | .py | 76626b5b42a3c7ae | 7.5 | 9 |
"""Bluetooth support for esphome."""
from __future__ import annotations
import logging
from functools import partial
from typing import TYPE_CHECKING
from aioesphomeapi import APIClient, BluetoothProxyFeature, DeviceInfo
from habluetooth import HaBluetoothConnector, get_manager
from .backend.client import ESPHomeCl... | Bluetooth-Devices/bleak-esphome | src/bleak_esphome/connect.py | .py | d5c6bf6ff806bba3 | 7.5 | 9 |
from __future__ import annotations
import asyncio
import logging
from typing import TYPE_CHECKING, TypedDict
import habluetooth
from aioesphomeapi import APIClient, ReconnectLogic
import bleak_esphome
from ._cancellation import is_spurious_cancellation
if TYPE_CHECKING:
from collections.abc import Callable
... | Bluetooth-Devices/bleak-esphome | src/bleak_esphome/connection_manager.py | .py | 7c1b4253c47dbe60 | 7.5 | 9 |
from typing import Any
from bleak.backends.scanner import BLEDevice
BLE_DEVICE_DEFAULTS = {
"name": None,
"details": None,
}
def generate_ble_device(
address: str | None = None,
name: str | None = None,
details: Any | None = None,
**kwargs: Any,
) -> BLEDevice:
"""Generate a BLEDevice wi... | Bluetooth-Devices/bleak-esphome | tests/__init__.py | .py | bb72ba68de732618 | 7 | 9 |
"""Importable helpers and constants for ``tests/backend``."""
from __future__ import annotations
import asyncio
from contextlib import contextmanager
from typing import TYPE_CHECKING, Any
from unittest.mock import Mock, patch
from bleak import BleakClient
from bleak.backends.device import BLEDevice
from bleak_espho... | Bluetooth-Devices/bleak-esphome | tests/backend/_helpers.py | .py | 71101f5836e93b8d | 8 | 9 |
"""Tests for ESPHomeBluetoothCache."""
from __future__ import annotations
from bleak.backends.service import BleakGATTServiceCollection
from bleak_esphome.backend.cache import MAX_CACHED_SERVICES, ESPHomeBluetoothCache
def test_get_gatt_services_cache_miss_returns_none() -> None:
"""An unknown address yields `... | Bluetooth-Devices/bleak-esphome | tests/backend/test_cache.py | .py | 7ab463fb990b4117 | 7 | 9 |
from unittest.mock import AsyncMock, Mock, patch
import pytest
from aioesphomeapi import (
APIClient,
APIVersion,
BluetoothProxyFeature,
DeviceInfo,
ReconnectLogic,
)
from bleak_retry_connector import BleakSlotManager
from bluetooth_adapters import AdapterDetails, BluetoothAdapters
from habluetooth... | Bluetooth-Devices/bleak-esphome | tests/conftest.py | .py | 97ddb0fbf47f6956 | 8 | 9 |
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