code stringlengths 1 1.96M | language stringclasses 1
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#!/bin/bash
function trickResample(){
local rMaster=${1}
local dorisStep=`pn2rs "${2}"`
local rFile=`canonicalPath ${3}`
local rFFormat=`pn2rs "${4}"`
#User can change the resampleFolder if they like.
if [ "${resampleFolder:-isEmpty}" == "isEmpty" ]; then
local rFolder=${outputFolder}/resample/${rM... | Shell |
#!/bin/bash
function scrop_regular()
{
#preprocess the drs file
pp ${dorisProcess}
#rm -f ${outputFolder}/${dorisProcess}.drs
#cat "${ADOREFOLDER}/drs/${dorisProcess}.drs" | while read line; do
# newline=`eval echo -E ${line}`
# echo $newline >> ${outputFolder}/${dorisProcess}.drs
#done
# remove und... | Shell |
#!/bin/bash
pp ${dorisProcess}
doris ${outputFolder}/${dorisProcess}.drs
if [ "${bistatic}" == "on" ]; then
#openInIpython "${ADOREFOLDER}/lib/python/fun/subtrrefdem_bistatic.py"
floatmult ${crd_out_dem} 0.5
mv ${crd_out_dem}.floatmult0.5 ${crd_out_dem}
fi
[ $? -eq 0 ] && echo "${dorisProcess}: SUCCESS"
| Shell |
#!/bin/bash
dem2slant2h
[ $? -eq 0 ] && echo "${dorisProcess}: SUCCESS"
| Shell |
#!/bin/bash
pp ${dorisProcess}
doris ${outputFolder}/${dorisProcess}.drs
# We do not use the *.srp file but we need the srph2ph and
# correct output in the result file. So we run it anyway.
if [ "${bistatic}" == "on" ]; then
openInIpython "${ADOREFOLDER}/lib/python/fun/subtrrefpha_bistatic.py"
fi
[ $? -eq 0 ] ... | Shell |
#!/bin/bash
pp ${dorisProcess}
if [ -z ${fc_in_pos} ]; then
#if the input file is not defined remove the line
grep -v -i -w "fc_in_pos" ${outputFolder}/${dorisProcess}.drs > ${outputFolder}/${dorisProcess}.drs.new
mv ${outputFolder}/${dorisProcess}.drs.new ${outputFolder}/${dorisProcess}.drs
fi
doris ${outputF... | Shell |
#!/bin/bash
pp ${dorisProcess}
if [ -z ${pf_in_file} ]; then
#if the input file is not defined remove the line
grep -v -i -w "pf_in_file" ${outputFolder}/${dorisProcess}.drs > ${outputFolder}/${dorisProcess}.drs.new
mv ${outputFolder}/${dorisProcess}.drs.new ${outputFolder}/${dorisProcess}.drs
fi
if [ -z ${pf_... | Shell |
#!/bin/bash
pp ${dorisProcess}
if [ -z ${fe_in_pos} ]; then
#if the input file is not defined remove the line
grep -v -i -w "fe_in_pos" ${outputFolder}/${dorisProcess}.drs > ${outputFolder}/${dorisProcess}.drs.new
mv ${outputFolder}/${dorisProcess}.drs.new ${outputFolder}/${dorisProcess}.drs
fi
doris ${outputF... | Shell |
#!/bin/bash
function coarsecorr_manual(){
#get width of m_crop
##check if reading ovs or crop
if [ `readRes.sh $m_resfile process "oversample"` == "1" ]; then
mwidth=`readRes.sh $m_resfile $(pn2rs m_ovs) "Number of pixels"`
mcrop=`readRes.sh $m_resfile $(pn2rs m_ovs) "Data_output_file"`
mfrmt=`readRe... | Shell |
#!/bin/bash
#
# USAGE:
# m_readfiles
#
# DESCRIPTION:
# m_readfiles is a builtin ADORE process.
# It runs the DORIS step with the same name.
#
# This is the first step if the ERS1/2 SLC images are processed.
# The SLC leader, volume and (header of the) data file are read, and relevant parameters are written to the... | Shell |
#!/bin/bash
#
# USAGE:
# s_readfiles
#
# DESCRIPTION:
# s_readfiles is a builtin ADORE process.
# It runs the DORIS step with the same name.
#
# It is the same as step M_READFILES but then for the slave image. See M_READFILES (? m_readfiles) for more information on this step.
#
# In order to be compatible with off... | Shell |
#!/bin/bash
args=$#
if [ ${args} -lt 3 ]
then
echo " USAGE: ${0} lat lon dist [dist2]"
echo " "
echo " lat: Decimal Degree Latitude of center coordinate"
echo " lon: Decimal Degree Longitude of center coordinate"
echo " dist: Distance in [km] to be converted to decimal degrees"
echo " dist2: Optional parameter. ... | Shell |
#!/bin/bash
# USAGE:
# rs2pn resultfileSection resultfile
#
# DESCRIPTION:
# RS2PN is an external ADORE command.
# It outputs the process name for the given DORIS result file section.
#
# INPUT:
# resultfileSection: DORIS resultfile section to lookup.
# Optional:
# resultfile: Name of the resultfile to define... | Shell |
#!/bin/bash
if [ "${s_in_method}" == "ALOS" ]; then
s_bandwidth=`readRes.sh ${s_resfile} readfiles "Total_range_band_width (MHz)"`
if [ "${s_bandwidth}" == "14" ]; then
if [ `readRes.sh $s_resfile process "oversample"` == "0" ]; then
echo "Range oversampling master."
sfrmt=`readRes.sh $s_resfile $(pn2rs s_cr... | Shell |
#!/bin/bash
# USAGE:
# waitjob hostname.jobid
# waitjob (hostname.jobid1 hostname.jobid2 ...)
#
# DESCRIPTION:
# WAITJOB is an internal ADORE command.
# It loops over the given jobs and returns upon their completion.
#
# This script is compatible with the Torque-PBS system.
#
# INPUT:
# hostname.jobid: host... | Shell |
#!/bin/bash
#
# USAGE:
# archive create [path/to/folder] [archiveName]
#
# DESCRIPTION:
# archive is an ADORE function.
# It creates a tar archive for the given folder, as well as creating
# checksums (md5sum) for each file. The md5sums are verified during
# extraction.
#
# INPUT:
# path/to/folder: Relative (or ... | Shell |
#!/bin/bash
# ADORE
# Automatic Doris Environment
#
# USAGE:
# deramp dorisStep
# deramp dorisStep:filename [-o ORDER -e ESTIMATEFILE]
#
# DESCRIPTION:
# DERAMP is an internal ADORE command.
# It removes a first or second order plane from DORIS results using python, numpy, scipy.
#
# The deramp module is locat... | Shell |
#!/bin/bash
#
# USAGE:
# crops dorisProcesses
#
# DESCRIPTION:
# crops is an ADORE function.
#
# INPUT:
#
# OUTPUT:
#
# EXAMPLES:
# crops "m_readfiles;m_crop_m_ovs"
#######################################################
function processCropSteps(){
# reload original settings
settings load ${originalSettings... | Shell |
#!/bin/bash
# USAGE:
# pn2rs processName
# pnr2rs -f processName
#
# DESCRIPTION:
# PN2RS is an internal ADORE function.
# It outputs the resultfile section name or the
# result file name for the given processName.
#
# INPUT:
# -f: Flag for filename. If present corresponding filename
# is returned.
# processN... | Shell |
#!/bin/bash
dorisProcess2OutputFile_outputs=(_filename _resfile _format _numpixels _numlines);
function dorisProcess2OutputFile(){
# Usage:
# dorisProcess2OutputFile dorisStep [searchparameter]
# ex:
# call (filename resfile format numpixels numlines)=dorisProcess2OutputFile subttrefpha
# call (filename resfile fo... | Shell |
#!/bin/bash
function visualize_fine(){
${ADOREFOLDER}/lib/python/plot_fine.py ${i_resfile}
}
function visualize_coarsecorr(){
${ADOREFOLDER}/lib/python/plot_coarsecorr.py ${i_resfile}
}
function visualize_map(){
${ADOREFOLDER}/lib/python/matshowclick_geocode.py ${i_resfile} ${@}
}
#################
## MAIN
##... | Shell |
#!/bin/bash
# USAGE:
# saveas exportFormat [optionalParameters] processName
#
# DESCRIPTION:
# SAVEAS is an internal ADORE command.
# It prepares DORIS results so that they can be opened by other programs.
# Currently ENVI and ArcGIS are supported.
#
# INPUT:
# exportFormat: envi, arcgis, gdal, grd.
# processN... | Shell |
#!/bin/bash
# ADORE
# Automatic Doris Environment
#
# USAGE:
# raster a|p|m dorisStep cpxfiddleOptions
# raster a|p|m dorisStep:filename cpxfiddleOptions
#
# DESCRIPTION:
# RASTER is an internal ADORE command.
# It creates sunraster images of the DORIS products using
# cpxfiddle.
#
# ADORE variable raster_fo... | Shell |
#!/bin/bash
#
# USAGE:
# giant step
#
# DESCRIPTION:
# GIANT is an ADORE function which calls GIAnT package for
# timeseries analysis.
#
# INPUT:
# step: prepxml_SBAS, PrepIgramStack, ProcessStack, SBASInvert
# OUTPUT:
#
# EXAMPLES:
#
#######################################################
function prepxml_SB... | Shell |
#!/bin/bash
# ADORE
# Automatic Doris Environment
#
# USAGE:
# view a|p|m dorisStep cpxviewOptions
# view a|p|m dorisStep:filename cpxviewOptions
#
# DESCRIPTION:
# VIEW is an internal ADORE command.
# It displays the DORIS image files using python-pylab (cpxview).
#
# The input parameters are almost identical t... | Shell |
#!/bin/bash
if [ "${m_in_method}" == "ALOS" ]; then
m_bandwidth=`readRes.sh ${m_resfile} readfiles "Total_range_band_width (MHz)"`
if [ "${m_bandwidth}" == "14" ]; then
if [ `readRes.sh $m_resfile process "oversample"` == "0" ]; then
echo "Range oversampling master."
mfrmt=`readRes.sh $m_resfile $(... | Shell |
#!/bin/bash
function gnuplot_baseline(){
# local parameterR
# echo "Generating ${1}.ps"
# parameterR=`minmax -I100/400 ${1}`
# psxy -JX6.5i -R${parameterR} -Bg200a200:"Btemp [days]":/g200a200:"Bperp [m]":WSne:."Baselines": -K > ${1}.ps
# cat ${1} | while read x y label
# do
# psxy -J -R -Sc0.125i -G0/0/0 -... | Shell |
#!/bin/bash
#
# USAGE:
# s dorisProcess
# s variableName
#
# DESCRIPTION:
# s is a builtin ADORE command.
# It can show the input file for the given DORIS processing step. It can
# also be used to display ADORE variables.
#
# INPUT:
# dorisProcess: Name of the DORIS processing step to run. List of available
# ... | Shell |
#!/bin/bash
# USAGE:
# scenes
# scenes exclude orbitFolder1 orbitFolder2 ...
# scenes include orbitFolder1 orbitFolder2 ...
# scenes init /path/to/data [/path/to/output/data/folder/]
# scenes add /path/to/data
# scenes rescan
#
# DESCRIPTION:
# SCENES is an internal ADORE command.
# It has the following usag... | Shell |
#!/bin/bash
#
# USAGE:
# tutorial start [tutorialName]
# tutorial list
# tutorial ?|h [tutorialName]
#
# DESCRIPTION:
# TUTORIAL is an ADORE function which starts a pre-recorded tutorial.
#
# INPUT:
# start: Start a given tutorial
# list: List available tutorials.
# OUTPUT:
# interactive.
# EXAMPLES:
#
##... | Shell |
#!/bin/bash
#
# USAGE:
# p dorisProcess
# p adoreScript.adr
#
# DESCRIPTION:
# p is a builtin ADORE command.
# It runs the given DORIS processing step or the ADORE script.
#
# INPUT:
# dorisProcess: Name of the DORIS processing step to run. List of available
# processes can be found at the end of this help messa... | Shell |
#!/usr/bin/env bash
function runIpython(){
local cmd="${@}"
mkdir -p ${tmpFolder}
settings list &> ${tmpFolder}/settings.set
echo "[_ipy_]" &>> ${tmpFolder}/settings.set
s _ipy_ |sed 's/_ipy_//g' &>> ${tmpFolder}/settings.set
#check ipython version
local ipv parameters
ipv=`ipython -V|cut -d. -f1-2`
if [ "${ipv}" ==... | Shell |
#!/bin/bash
if [ "${m_in_method}" == "ALOS" ]; then
m_bandwidth=`readRes.sh ${m_resfile} readfiles "Total_range_band_width (MHz)"`
if [ "${m_bandwidth}" == "14" ]; then
if [ `readRes.sh $m_resfile process "oversample"` == "0" ]; then
echo "Range oversampling master."
mfrmt=`readRes.sh $m_resfile $(... | Shell |
#!/bin/bash
#
# USAGE:
# archive create [path/to/folder] [archiveName]
#
# DESCRIPTION:
# archive is an ADORE function.
# It creates a tar archive for the given folder, as well as creating
# checksums (md5sum) for each file. The md5sums are verified during
# extraction.
#
# INPUT:
# path/to/folder: Relative (or ... | Shell |
#!/bin/bash
# USAGE:
# dem operation parameters
# dem make [SRTM1/SRTM3] [extraBufferPercentage] [name]
# dem load path/to/demfile.dem
# dem unload
# dem check
# dem import path/to/demfile.dem "gdalOptions"
# dem extent
# dem expand path/to/big.dem [merged.bil]
# dem view
#
# DESCRIPTION:
# DEM is an inte... | Shell |
#!/bin/bash
# ADORE
# Automatic Doris Environment
#
# USAGE:
# deramp dorisStep
# deramp dorisStep:filename [-o ORDER -e ESTIMATEFILE]
#
# DESCRIPTION:
# DERAMP is an internal ADORE command.
# It removes a first or second order plane from DORIS results using python, numpy, scipy.
#
# The deramp module is locat... | Shell |
#!/bin/bash
# USAGE:
# settings option [argument]
# settings apply variableName
# settings apply [-rq] variableName1=variableValue1 [variableName2 variableName3=...]
# settings check
# settings fix [-q]
# settings init [-q]
# settings list
# settings raw
# settings save [fileName]
# settings load [fileName]
# settings ... | Shell |
#!/bin/bash
#
# USAGE:
# ? commandName
#
# DESCRIPTION:
# ? is a builtin ADORE command.
# It displays the help for given adore command.
#
#
# INPUT:
# commandName: ADORE command name to get help. A list of commands
# can be found at the end of this help message.
#
# OUTPUT:
# Help message for the specified... | Shell |
#!/bin/bash
#
# USAGE:
# superMasterResample
#
# DESCRIPTION:
# superMasterResample is an ADORE function.
#
# INPUT:
#
# OUTPUT:
#
# EXAMPLES:
# superMasterResample
function processResampleSteps(){
# reload original settings
settings load ${originalSettingsFile}
master=${resampleMaster}
local scene=$... | Shell |
#!/bin/bash
# ADORE
# Automatic Doris Environment
#
# USAGE:
# raster a|p|m dorisStep cpxfiddleOptions
# raster a|p|m dorisStep:filename cpxfiddleOptions
#
# DESCRIPTION:
# RASTER is an internal ADORE command.
# It creates sunraster images of the DORIS products using
# cpxfiddle.
#
# ADORE variable raster_fo... | Shell |
#!/bin/bash
function gnuplot_baseline(){
# local parameterR
# echo "Generating ${1}.ps"
# parameterR=`minmax -I100/400 ${1}`
# psxy -JX6.5i -R${parameterR} -Bg200a200:"Btemp [days]":/g200a200:"Bperp [m]":WSne:."Baselines": -K > ${1}.ps
# cat ${1} | while read x y label
# do
# psxy -J -R -Sc0.125i -G0/0/0 -... | Shell |
#!/bin/bash
#
# USAGE:
# report [i12sFolder] "dorisSteps"
# Example:
# report "interfero;coherence"
function create(){
generateRandomString
curSetFile=${randomString}
settings save ${curSetFile}
local rFolder iFolder rSteps
if [ $# -eq 2 ]; then
rFolder="./report"
iFolder=${1}
rSteps=${2}
elif [ $# -eq 1 ];... | Shell |
#!/bin/bash
# USAGE:
# saveas exportFormat [optionalParameters] processName
#
# DESCRIPTION:
# SAVEAS is an internal ADORE command.
# It prepares DORIS results so that they can be opened by other programs.
# Currently ENVI and ArcGIS are supported.
#
# INPUT:
# exportFormat: envi, arcgis, gdal, grd.
# processN... | Shell |
#!/bin/bash
# USAGE:
# undo processName [fileName]
# undo processName
# undo only processName
#
# DESCRIPTION:
# UNDO is an internal ADORE command. It removes the
# given processName from the result files.
#
# INPUT:
# only: if specified undo removes only a single step and keep
# the information for the fol... | Shell |
#!/bin/bash
#
# USAGE:
# tutorial start [tutorialName]
# tutorial list
# tutorial ?|h [tutorialName]
#
# DESCRIPTION:
# TUTORIAL is an ADORE function which starts a pre-recorded tutorial.
#
# INPUT:
# start: Start a given tutorial
# list: List available tutorials.
# OUTPUT:
# interactive.
# EXAMPLES:
#
##... | Shell |
#!/bin/bash
#
# USAGE:
# p dorisProcess
# p adoreScript.adr
#
# DESCRIPTION:
# p is a builtin ADORE command.
# It runs the given DORIS processing step or the ADORE script.
#
# INPUT:
# dorisProcess: Name of the DORIS processing step to run. List of available
# processes can be found at the end of this help messa... | Shell |
#!/bin/bash
# USAGE:
# s_crop2resample
#
# DESCRIPTION:
# S_CROP2RESAMPLE is an internal ADORE command.
# It is used in creating interferograms coregistered to a different scene,
# as needed in Small Baselines (SBAS) interferometry.
#
# s_crop2resample copies the result of m_ovs or the m_crop as s_resample
# an... | Shell |
#!/bin/bash
# USAGE:
# . initialize
#
# DESCRIPTION:
# INITIALIZE is an internal ADORE command.
# It is used to load and check user settings. Regular users will probably not
# need to use it. For saving and loading user settings see "? settings"
#
# INPUT:
# No input parameters are required.
#
# OUTPUT:
# Outpu... | Shell |
#!/bin/bash
# USAGE:
# waitjob hostname.jobid
# waitjob (hostname.jobid1 hostname.jobid2 ...)
#
# DESCRIPTION:
# WAITJOB is an internal ADORE command.
# It loops over the given jobs and returns upon their completion.
#
# This script is compatible with the Torque-PBS system.
#
# INPUT:
# hostname.jobid: host... | Shell |
#!/bin/bash
dorisProcess2OutputFile_outputs=(_filename _resfile _format _numpixels _numlines);
function dorisProcess2OutputFile(){
# Usage:
# dorisProcess2OutputFile dorisStep [searchparameter]
# ex:
# call (filename resfile format numpixels numlines)=dorisProcess2OutputFile subttrefpha
# call (filename resfile fo... | Shell |
#!/bin/bash
# USAGE:
# scenes
# scenes exclude orbitFolder1 orbitFolder2 ...
# scenes include orbitFolder1 orbitFolder2 ...
# scenes init /path/to/data [/path/to/output/data/folder/]
# scenes add /path/to/data
# scenes rescan
#
# DESCRIPTION:
# SCENES is an internal ADORE command.
# It has the following usag... | Shell |
#!/bin/bash
# ADORE
# Automatic Doris Environment
#
# USAGE:
# view a|p|m dorisStep cpxviewOptions
# view a|p|m dorisStep:filename cpxviewOptions
#
# DESCRIPTION:
# VIEW is an internal ADORE command.
# It displays the DORIS image files using python-pylab (cpxview).
#
# The input parameters are almost identical t... | Shell |
#!/bin/bash
# USAGE:
# cpDorisFiles sourceFolder destinationFolder
#
# DESCRIPTION:
# This script modifies Doris Result Files (*.res) and Doris Input Files
# (*.drs) by changing locations of the output files to their current locations.
# It is a mere string replacement utility. It does not check for errors.
# Ea... | Shell |
#!/bin/bash
#
# USAGE:
# s dorisProcess
# s variableName
#
# DESCRIPTION:
# s is a builtin ADORE command.
# It can show the input file for the given DORIS processing step. It can
# also be used to display ADORE variables.
#
# INPUT:
# dorisProcess: Name of the DORIS processing step to run. List of available
# ... | Shell |
#!/bin/bash
if [ "${s_in_method}" == "ALOS" ]; then
s_bandwidth=`readRes.sh ${s_resfile} readfiles "Total_range_band_width (MHz)"`
if [ "${s_bandwidth}" == "14" ]; then
if [ `readRes.sh $s_resfile process "oversample"` == "0" ]; then
echo "Range oversampling master."
sfrmt=`readRes.sh $s_resfile $(pn2rs s_cr... | Shell |
#!/bin/bash
# USAGE:
# exclude
# exclude orbitFolder1 orbitFolder2 ...
#
# DESCRIPTION:
# EXCLUDE is an internal ADORE command.
# It shows and creates the list of excluded orbits.
#
# INPUT:
# exclude: with no input parameters, currently excluded files are shown.
#
# exclude orbitFolder1 orbitFolder2 ...:
# ... | Shell |
#!/bin/bash
#
# USAGE:
# crops dorisProcesses
#
# DESCRIPTION:
# crops is an ADORE function.
#
# INPUT:
#
# OUTPUT:
#
# EXAMPLES:
# crops "m_readfiles;m_crop_m_ovs"
#######################################################
function processCropSteps(){
# reload original settings
settings load ${originalSettings... | Shell |
#!/bin/bash
#
# USAGE:
# quejob adore_command [outputFolder] -- [qsub options]
#
# DESCRIPTION:
# quejob is an internal ADORE command.
# It runs the given adore command in the Torque-PBS system.
# Quejob uses the Torque-PBS system to distribute jobs to other computers.
#
# INPUT:
# adore_command: commands to... | Shell |
#!/bin/bash
# USAGE:
# addrefpha2crop
#
# DESCRIPTION:
# ADDREFPHA2CROP is an internal ADORE command.
# It is used in creating interferograms coregistered to a different scene,
# as needed in Small Baselines (SBAS) interferometry. The command adds the
# reference phase dumped by subtrrefpha (srp_dumprefpha=on) ... | Shell |
#!/bin/bash
function previousMasterSteps(){
local steps=""
for p in m_readfiles m_porbits m_crop m_simamp m_timing m_ovs
do
check -p ${p} ${1} &>> /dev/null
[ $? -eq 1 ] && steps="${steps};${p}"
if [ ${p} == "m_crop" ]; then
local outputFile=`readRes.sh ${1} $(pn2rs m_crop) "Data_output_file"`
... | Shell |
#!/bin/bash
function visualize_fine(){
${ADOREFOLDER}/lib/python/plot_fine.py ${i_resfile}
}
function visualize_coarsecorr(){
${ADOREFOLDER}/lib/python/plot_coarsecorr.py ${i_resfile}
}
function visualize_map(){
${ADOREFOLDER}/lib/python/matshowclick_geocode.py ${i_resfile} ${@}
}
#################
## MAIN
##... | Shell |
#!/bin/bash
# USAGE:
# mvDorisFiles sourceFolder destinationFolder
# mvDorisFiles -s "/exact/path/to/source/Folder" destinationFolder
#
# DESCRIPTION:
# This script modifies Doris Result Files (*.res) and Doris Input Files
# (*.drs) by changing locations of the output files to their current locations.
# It is a ... | Shell |
#!/bin/bash
# USAGE:
# pn2rs processName
# pnr2rs -f processName
#
# DESCRIPTION:
# PN2RS is an internal ADORE function.
# It outputs the resultfile section name or the
# result file name for the given processName.
#
# INPUT:
# -f: Flag for filename. If present corresponding filename
# is returned.
# processN... | Shell |
#!/bin/bash
# USAGE:
# dem2slant2h
#
# DESCRIPTION:
# DEM2SLANT2H is an internal ADORE command.
# It creates DORIS slant2h output from comprefdem.
#
# INPUT:
# There are no required input parameters for this command.
#
# OUTPUT:
# Adds slant2h step to ${i_resfile}.
#
#
#
# Author: Mahmut Arikan
#
# TUDelft ... | Shell |
#!/usr/bin/env bash
function runIpython(){
local cmd="${@}"
mkdir -p ${tmpFolder}
settings list &> ${tmpFolder}/settings.set
echo "[_ipy_]" &>> ${tmpFolder}/settings.set
s _ipy_ |sed 's/_ipy_//g' &>> ${tmpFolder}/settings.set
#check ipython version
local ipv parameters
ipv=`ipython -V|cut -d. -f1-2`
if [ "${ipv}" ==... | Shell |
#!/bin/bash
# USAGE:
# check
# check setup
# check resultFile
# check -p processName [filename]
# check -j jobid
# check productSize
#
# DESCRIPTION:
# CHECK is an internal ADORE command.
# It shows the process control list from the result files.
#
# Using the -p option it can be used to check whether a giv... | Shell |
#!/bin/bash
#
# USAGE:
# i12s dorisProcesses
#
# DESCRIPTION:
# i12s is an ADORE function.
#
# INPUT:
#
# OUTPUT:
#
# EXAMPLES:
# i12s "coarseorb;coarsecorr"
#######################################################
function processInterferoSteps(){
local scenes=${1}
# load original settings in case some sett... | Shell |
#!/bin/bash
#
# USAGE:
# giant step
#
# DESCRIPTION:
# GIANT is an ADORE function which calls GIAnT package for
# timeseries analysis.
#
# INPUT:
# step: prepxml_SBAS, PrepIgramStack, ProcessStack, SBASInvert
# OUTPUT:
#
# EXAMPLES:
#
#######################################################
function prepxml_SB... | Shell |
#!/bin/bash
#Source other function files
source ${ADORESCR}/fun/resfile.fun
source ${ADORESCR}/fun/plotting.fun
###### SOME FUNCTIONS
function ?
{
h "$@"
}
function addrefpha2s_crop(){
. ${ADORESCR}/fun/addrefpha2s_crop "${@}"
}
function archive(){
. ${ADORESCR}/fun/archive ${@}
}
function ask() # See... | Shell |
#!/bin/bash
#
# USAGE:
# superMasterResample
#
# DESCRIPTION:
# superMasterResample is an ADORE function.
#
# INPUT:
#
# OUTPUT:
#
# EXAMPLES:
# superMasterResample
function processResampleSteps(){
# reload original settings
settings load ${originalSettingsFile}
master=${resampleMaster}
local scene=$... | Shell |
#!/bin/bash
# USAGE:
# settings option [argument]
# settings apply variableName
# settings apply [-rq] variableName1=variableValue1 [variableName2 variableName3=...]
# settings check
# settings fix [-q]
# settings init [-q]
# settings list
# settings raw
# settings save [fileName]
# settings load [fileName]
# settings ... | Shell |
#!/bin/bash
#
# USAGE:
# i12s dorisProcesses
#
# DESCRIPTION:
# i12s is an ADORE function.
#
# INPUT:
#
# OUTPUT:
#
# EXAMPLES:
# i12s "coarseorb;coarsecorr"
#######################################################
function processInterferoSteps(){
local scenes=${1}
# load original settings in case some sett... | Shell |
#!/bin/bash
# USAGE:
# dem2slant2h
#
# DESCRIPTION:
# DEM2SLANT2H is an internal ADORE command.
# It creates DORIS slant2h output from comprefdem.
#
# INPUT:
# There are no required input parameters for this command.
#
# OUTPUT:
# Adds slant2h step to ${i_resfile}.
#
#
#
# Author: Mahmut Arikan
#
# TUDelft ... | Shell |
#!/bin/bash
# USAGE:
# check
# check setup
# check resultFile
# check -p processName [filename]
# check -j jobid
# check productSize
#
# DESCRIPTION:
# CHECK is an internal ADORE command.
# It shows the process control list from the result files.
#
# Using the -p option it can be used to check whether a giv... | Shell |
#!/bin/bash
#
# USAGE:
# quejob adore_command [outputFolder] -- [qsub options]
#
# DESCRIPTION:
# quejob is an internal ADORE command.
# It runs the given adore command in the Torque-PBS system.
# Quejob uses the Torque-PBS system to distribute jobs to other computers.
#
# INPUT:
# adore_command: commands to... | Shell |
#!/bin/bash
# USAGE:
# addrefpha2crop
#
# DESCRIPTION:
# ADDREFPHA2CROP is an internal ADORE command.
# It is used in creating interferograms coregistered to a different scene,
# as needed in Small Baselines (SBAS) interferometry. The command adds the
# reference phase dumped by subtrrefpha (srp_dumprefpha=on) ... | Shell |
#!/bin/bash
# USAGE:
# s_crop2resample
#
# DESCRIPTION:
# S_CROP2RESAMPLE is an internal ADORE command.
# It is used in creating interferograms coregistered to a different scene,
# as needed in Small Baselines (SBAS) interferometry.
#
# s_crop2resample copies the result of m_ovs or the m_crop as s_resample
# an... | Shell |
#!/bin/bash
# USAGE:
# dem operation parameters
# dem make [SRTM1/SRTM3] [extraBufferPercentage] [name]
# dem load path/to/demfile.dem
# dem unload
# dem check
# dem import path/to/demfile.dem "gdalOptions"
# dem extent
# dem expand path/to/big.dem [merged.bil]
# dem view
#
# DESCRIPTION:
# DEM is an inte... | Shell |
#!/bin/bash
# USAGE:
# cpDorisFiles sourceFolder destinationFolder
#
# DESCRIPTION:
# This script modifies Doris Result Files (*.res) and Doris Input Files
# (*.drs) by changing locations of the output files to their current locations.
# It is a mere string replacement utility. It does not check for errors.
# Ea... | Shell |
#!/bin/bash
# USAGE:
# . initialize
#
# DESCRIPTION:
# INITIALIZE is an internal ADORE command.
# It is used to load and check user settings. Regular users will probably not
# need to use it. For saving and loading user settings see "? settings"
#
# INPUT:
# No input parameters are required.
#
# OUTPUT:
# Outpu... | Shell |
#!/bin/bash
# USAGE:
# mvDorisFiles sourceFolder destinationFolder
# mvDorisFiles -s "/exact/path/to/source/Folder" destinationFolder
#
# DESCRIPTION:
# This script modifies Doris Result Files (*.res) and Doris Input Files
# (*.drs) by changing locations of the output files to their current locations.
# It is a ... | Shell |
#!/bin/bash
#
# USAGE:
# ? commandName
#
# DESCRIPTION:
# ? is a builtin ADORE command.
# It displays the help for given adore command.
#
#
# INPUT:
# commandName: ADORE command name to get help. A list of commands
# can be found at the end of this help message.
#
# OUTPUT:
# Help message for the specified... | Shell |
#!/bin/bash
# USAGE:
# undo processName [fileName]
# undo processName
# undo only processName
#
# DESCRIPTION:
# UNDO is an internal ADORE command. It removes the
# given processName from the result files.
#
# INPUT:
# only: if specified undo removes only a single step and keep
# the information for the fol... | Shell |
#!/bin/bash
#
# USAGE:
# report [i12sFolder] "dorisSteps"
# Example:
# report "interfero;coherence"
function create(){
generateRandomString
curSetFile=${randomString}
settings save ${curSetFile}
local rFolder iFolder rSteps
if [ $# -eq 2 ]; then
rFolder="./report"
iFolder=${1}
rSteps=${2}
elif [ $# -eq 1 ];... | Shell |
#!/bin/bash
function previousMasterSteps(){
local steps=""
for p in m_readfiles m_porbits m_crop m_simamp m_timing m_ovs
do
check -p ${p} ${1} &>> /dev/null
[ $? -eq 1 ] && steps="${steps};${p}"
if [ ${p} == "m_crop" ]; then
local outputFile=`readRes.sh ${1} $(pn2rs m_crop) "Data_output_file"`
... | Shell |
#!/bin/bash
#Source other function files
source ${ADORESCR}/fun/resfile.fun
source ${ADORESCR}/fun/plotting.fun
###### SOME FUNCTIONS
function ?
{
h "$@"
}
function addrefpha2s_crop(){
. ${ADORESCR}/fun/addrefpha2s_crop "${@}"
}
function archive(){
. ${ADORESCR}/fun/archive ${@}
}
function ask() # See... | Shell |
#!/bin/bash
# USAGE:
# exclude
# exclude orbitFolder1 orbitFolder2 ...
#
# DESCRIPTION:
# EXCLUDE is an internal ADORE command.
# It shows and creates the list of excluded orbits.
#
# INPUT:
# exclude: with no input parameters, currently excluded files are shown.
#
# exclude orbitFolder1 orbitFolder2 ...:
# ... | Shell |
#!/bin/bash
# USAGE:
# copyRes.sh fromResultFile fromDorisStep [toResultFile toDorisStep]
#
# INPUT:
# fromResultFile: is the input DORIS result file (*.res). fromDorisStep will be
# read from this file.
# fromDorisStep: is the processing step to copy.
#
# OPTIONAL INPUT:
# toResultFile: is the output DORIS ... | Shell |
#!/bin/bash
nargs=$#
if [ $nargs -ne 2 ]
then
echo " "
echo " findorbits.sh - Part of ADORE package"
echo " Batuhan Osmanoglu - CSTARS 2005"
echo " Usage: "
echo " findorbits.sh ResFile OrbitRoot"
echo " ResFile - Doris result file after successful M_READ"
echo " OrbitRoot - Root directory ... | Shell |
#!/bin/bash
# USAGE:
# construct_aster_dem.sh -n projectName -u username -p password -c category -f Localfolder -s stitchMethod W E S N
#
# DESCRIPTION:
# -n projectName: Specify a projectname for this DEM. The DEM will be generated inside a
# folder with this name. (default="dem")
# -u username: Your username for ... | Shell |
#!/bin/bash
###############################################
###############################################
# prepPSinput.sh
# Part of Adore Project
# Batuhan Osmanoglu, Sep 2007 CSTARS, Miami
#
#
# This function reads interferogram folders
# and generates the file list required for PS.
#
#
# Requires:
# - Location of... | Shell |
#!/bin/bash
###############################################
nargs=$#
if [ ${nargs} -lt 3 ]
then
cat<<_EOF
getI12sArea.sh
Part of Adore Project
Batuhan Osmanoglu, Aug 2007 CSTARS, Miami
This function reads the master.res file and
dumps first-last line, first last pixel.
Calculation is simply done by:
LINELO = Fir... | Shell |
#!/bin/bash
nargs=$#
if [ ${nargs} -lt 4 ]
then
cat<<_EOF
USAGE:
modifyRes.sh resultFile dorisStep parameter newValue
INPUT:
resultFile: is the DORIS result file (*.res)
dorisStep: is the processing step to look for the parameter.
parameter: field to be read in the result file. The column character should no... | Shell |
#!/bin/bash
##
## construct_dem.sh
## v1.2, 18-12-2009
## v1.1, 17-12-2008
## v1.0, 22-08-2006
##
## Made by Freek van Leijen and Zbigniew Perski
## Delft Institute of Earth Observation and Space Systems
## Delft University of Technology
##
## Started on Wed May 17 10:00:00 2006 Freek van Leijen
## Previous update M... | Shell |
#!/bin/bash
function getLastProcess {
resfile=${1}
#echo ${resfile}
startLine=`grep -n "Start_process_control" ${resfile} | cut -d: -f1`
#echo ${startLine}
endLine=`grep -n "End_process_control" ${resfile} | cut -d: -f1`
#echo ${endLine}
if [ "${endline}" != "${startLine}" ]; then
length=`echo ${endLine} - ... | Shell |
#!/bin/bash
###############################################
###############################################
# dumpbaseline.sh
# Part of Adore Project
# Batuhan Osmanoglu, Aug 2007 CSTARS, Miami
#
#
# This function reads the *.par files and
# renames the data folder with Orbit Numbers.
#
# Requires: (Run in data folder... | Shell |
#!/bin/bash
nargs=$#
if [ ${nargs} -lt 2 ]
then
cat<<_EOF
USAGE: readDrs.sh drsFile parameter
INPUT:
drsFile: is the DORIS input file (*.drs)
parameter: field to be read in the file.
OUTPUT:
parameter value
LIMITATIONS:
If the value of the parameter has ":" character the returned field might be wrong.
EXAM... | Shell |
#!/bin/sh
export PATH = $PATH:/usr/lib/doris
exec python /usr/share/adore-doris/gui/cpxview
| Shell |
#!/bin/sh
export PATH = $PATH:/usr/lib/doris
exec python /usr/share/adore-doris/gui/cpxview
| Shell |
#!/bin/sh
export PATH = $PATH:/usr/lib/doris
exec python /usr/share/adore-doris/gui/agooey
| Shell |
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