Upload folder using huggingface_hub
Browse files- .devcontainer/devcontainer.json +38 -0
- .devcontainer/setup.sh +33 -0
- .gitignore +250 -0
- LICENSE +21 -0
- README.md +136 -0
- data/test-00000-of-00002.parquet +3 -0
- data/test-00001-of-00002.parquet +3 -0
- data/train-00000-of-00010.parquet +3 -0
- data/train-00001-of-00010.parquet +3 -0
- data/train-00002-of-00010.parquet +3 -0
- data/train-00003-of-00010.parquet +3 -0
- data/train-00004-of-00010.parquet +3 -0
- data/train-00005-of-00010.parquet +3 -0
- data/train-00006-of-00010.parquet +3 -0
- data/train-00007-of-00010.parquet +3 -0
- data/train-00008-of-00010.parquet +3 -0
- data/train-00009-of-00010.parquet +3 -0
- dataset.py +448 -0
- generate_data.py +99 -0
- plot_animation.py +231 -0
- plot_sample.py +182 -0
- requirements.txt +7 -0
- sample_animation.gif +3 -0
- sample_plot.png +3 -0
.devcontainer/devcontainer.json
ADDED
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| 1 |
+
// For format details, see https://aka.ms/devcontainer.json. For config options, see the
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| 2 |
+
// README at: https://github.com/devcontainers/templates/tree/main/src/python
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| 3 |
+
{
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| 4 |
+
"name": "Python 3 - Dedalus",
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| 5 |
+
// Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile
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| 6 |
+
"image": "mcr.microsoft.com/devcontainers/python:1-3.12-bullseye",
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| 7 |
+
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| 8 |
+
// Features to add to the dev container. More info: https://containers.dev/features.
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| 9 |
+
"features": {
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| 10 |
+
"ghcr.io/rocker-org/devcontainer-features/miniforge:2": {},
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| 11 |
+
"ghcr.io/devcontainers/features/node:1": {}
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| 12 |
+
},
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| 13 |
+
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| 14 |
+
// Use 'forwardPorts' to make a list of ports inside the container available locally.
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| 15 |
+
// "forwardPorts": [],
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| 16 |
+
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| 17 |
+
// Use 'postCreateCommand' to run commands after the container is created.
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| 18 |
+
"postCreateCommand": "bash .devcontainer/setup.sh",
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| 19 |
+
"containerEnv": {
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| 20 |
+
"CONDA_DEFAULT_ENV": "dedalus3"
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| 21 |
+
},
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| 22 |
+
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| 23 |
+
// Configure tool-specific properties.
|
| 24 |
+
"customizations": {
|
| 25 |
+
"vscode": {
|
| 26 |
+
"extensions":[
|
| 27 |
+
"ms-python.python",
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| 28 |
+
"ms-python.vscode-pylance"
|
| 29 |
+
],
|
| 30 |
+
"settings": {
|
| 31 |
+
"python.pythonPath": "/opt/conda/envs/dedalus3/bin/python"
|
| 32 |
+
}
|
| 33 |
+
}
|
| 34 |
+
}
|
| 35 |
+
|
| 36 |
+
// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
|
| 37 |
+
// "remoteUser": "root"
|
| 38 |
+
}
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.devcontainer/setup.sh
ADDED
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| 1 |
+
#!/bin/bash
|
| 2 |
+
set -e
|
| 3 |
+
|
| 4 |
+
# Download the Dedalus install script to a temporary location
|
| 5 |
+
DEDALUS_INSTALL_SCRIPT="$(mktemp)"
|
| 6 |
+
curl -fsSL https://raw.githubusercontent.com/DedalusProject/dedalus_conda/master/conda_install_dedalus3.sh -o "$DEDALUS_INSTALL_SCRIPT"
|
| 7 |
+
|
| 8 |
+
# Ensure conda is initialized (adjust path if needed for your container)
|
| 9 |
+
if [ -f /opt/conda/etc/profile.d/conda.sh ]; then
|
| 10 |
+
source /opt/conda/etc/profile.d/conda.sh
|
| 11 |
+
elif [ -f "$HOME/miniconda3/etc/profile.d/conda.sh" ]; then
|
| 12 |
+
source "$HOME/miniconda3/etc/profile.d/conda.sh"
|
| 13 |
+
fi
|
| 14 |
+
|
| 15 |
+
# Install Dedalus only if the environment does not exist
|
| 16 |
+
if ! conda info --envs | grep -q dedalus3; then
|
| 17 |
+
conda activate base
|
| 18 |
+
bash "$DEDALUS_INSTALL_SCRIPT"
|
| 19 |
+
fi
|
| 20 |
+
|
| 21 |
+
|
| 22 |
+
conda activate dedalus3
|
| 23 |
+
|
| 24 |
+
conda env config vars set OMP_NUM_THREADS=1
|
| 25 |
+
conda env config vars set NUMEXPR_MAX_THREADS=1
|
| 26 |
+
|
| 27 |
+
# Install additional Python packages from requirements.txt
|
| 28 |
+
if [ -f requirements.txt ]; then
|
| 29 |
+
pip install -r requirements.txt
|
| 30 |
+
fi
|
| 31 |
+
|
| 32 |
+
# Clean up the temporary install script
|
| 33 |
+
rm -f "$DEDALUS_INSTALL_SCRIPT"
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.gitignore
ADDED
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@@ -0,0 +1,250 @@
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|
| 1 |
+
# Created by https://www.toptal.com/developers/gitignore/api/linux,macos,windows,python
|
| 2 |
+
# Edit at https://www.toptal.com/developers/gitignore?templates=linux,macos,windows,python
|
| 3 |
+
|
| 4 |
+
### Linux ###
|
| 5 |
+
*~
|
| 6 |
+
|
| 7 |
+
# temporary files which can be created if a process still has a handle open of a deleted file
|
| 8 |
+
.fuse_hidden*
|
| 9 |
+
|
| 10 |
+
# KDE directory preferences
|
| 11 |
+
.directory
|
| 12 |
+
|
| 13 |
+
# Linux trash folder which might appear on any partition or disk
|
| 14 |
+
.Trash-*
|
| 15 |
+
|
| 16 |
+
# .nfs files are created when an open file is removed but is still being accessed
|
| 17 |
+
.nfs*
|
| 18 |
+
|
| 19 |
+
### macOS ###
|
| 20 |
+
# General
|
| 21 |
+
.DS_Store
|
| 22 |
+
.AppleDouble
|
| 23 |
+
.LSOverride
|
| 24 |
+
|
| 25 |
+
# Icon must end with two \r
|
| 26 |
+
Icon
|
| 27 |
+
|
| 28 |
+
|
| 29 |
+
# Thumbnails
|
| 30 |
+
._*
|
| 31 |
+
|
| 32 |
+
# Files that might appear in the root of a volume
|
| 33 |
+
.DocumentRevisions-V100
|
| 34 |
+
.fseventsd
|
| 35 |
+
.Spotlight-V100
|
| 36 |
+
.TemporaryItems
|
| 37 |
+
.Trashes
|
| 38 |
+
.VolumeIcon.icns
|
| 39 |
+
.com.apple.timemachine.donotpresent
|
| 40 |
+
|
| 41 |
+
# Directories potentially created on remote AFP share
|
| 42 |
+
.AppleDB
|
| 43 |
+
.AppleDesktop
|
| 44 |
+
Network Trash Folder
|
| 45 |
+
Temporary Items
|
| 46 |
+
.apdisk
|
| 47 |
+
|
| 48 |
+
### macOS Patch ###
|
| 49 |
+
# iCloud generated files
|
| 50 |
+
*.icloud
|
| 51 |
+
|
| 52 |
+
### Python ###
|
| 53 |
+
# Byte-compiled / optimized / DLL files
|
| 54 |
+
__pycache__/
|
| 55 |
+
*.py[cod]
|
| 56 |
+
*$py.class
|
| 57 |
+
|
| 58 |
+
# C extensions
|
| 59 |
+
*.so
|
| 60 |
+
|
| 61 |
+
# Distribution / packaging
|
| 62 |
+
.Python
|
| 63 |
+
build/
|
| 64 |
+
develop-eggs/
|
| 65 |
+
dist/
|
| 66 |
+
downloads/
|
| 67 |
+
eggs/
|
| 68 |
+
.eggs/
|
| 69 |
+
lib/
|
| 70 |
+
lib64/
|
| 71 |
+
parts/
|
| 72 |
+
sdist/
|
| 73 |
+
var/
|
| 74 |
+
wheels/
|
| 75 |
+
share/python-wheels/
|
| 76 |
+
*.egg-info/
|
| 77 |
+
.installed.cfg
|
| 78 |
+
*.egg
|
| 79 |
+
MANIFEST
|
| 80 |
+
|
| 81 |
+
# PyInstaller
|
| 82 |
+
# Usually these files are written by a python script from a template
|
| 83 |
+
# before PyInstaller builds the exe, so as to inject date/other infos into it.
|
| 84 |
+
*.manifest
|
| 85 |
+
*.spec
|
| 86 |
+
|
| 87 |
+
# Installer logs
|
| 88 |
+
pip-log.txt
|
| 89 |
+
pip-delete-this-directory.txt
|
| 90 |
+
|
| 91 |
+
# Unit test / coverage reports
|
| 92 |
+
htmlcov/
|
| 93 |
+
.tox/
|
| 94 |
+
.nox/
|
| 95 |
+
.coverage
|
| 96 |
+
.coverage.*
|
| 97 |
+
.cache
|
| 98 |
+
nosetests.xml
|
| 99 |
+
coverage.xml
|
| 100 |
+
*.cover
|
| 101 |
+
*.py,cover
|
| 102 |
+
.hypothesis/
|
| 103 |
+
.pytest_cache/
|
| 104 |
+
cover/
|
| 105 |
+
|
| 106 |
+
# Translations
|
| 107 |
+
*.mo
|
| 108 |
+
*.pot
|
| 109 |
+
|
| 110 |
+
# Django stuff:
|
| 111 |
+
*.log
|
| 112 |
+
local_settings.py
|
| 113 |
+
db.sqlite3
|
| 114 |
+
db.sqlite3-journal
|
| 115 |
+
|
| 116 |
+
# Flask stuff:
|
| 117 |
+
instance/
|
| 118 |
+
.webassets-cache
|
| 119 |
+
|
| 120 |
+
# Scrapy stuff:
|
| 121 |
+
.scrapy
|
| 122 |
+
|
| 123 |
+
# Sphinx documentation
|
| 124 |
+
docs/_build/
|
| 125 |
+
|
| 126 |
+
# PyBuilder
|
| 127 |
+
.pybuilder/
|
| 128 |
+
target/
|
| 129 |
+
|
| 130 |
+
# Jupyter Notebook
|
| 131 |
+
.ipynb_checkpoints
|
| 132 |
+
|
| 133 |
+
# IPython
|
| 134 |
+
profile_default/
|
| 135 |
+
ipython_config.py
|
| 136 |
+
|
| 137 |
+
# pyenv
|
| 138 |
+
# For a library or package, you might want to ignore these files since the code is
|
| 139 |
+
# intended to run in multiple environments; otherwise, check them in:
|
| 140 |
+
# .python-version
|
| 141 |
+
|
| 142 |
+
# pipenv
|
| 143 |
+
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
|
| 144 |
+
# However, in case of collaboration, if having platform-specific dependencies or dependencies
|
| 145 |
+
# having no cross-platform support, pipenv may install dependencies that don't work, or not
|
| 146 |
+
# install all needed dependencies.
|
| 147 |
+
#Pipfile.lock
|
| 148 |
+
|
| 149 |
+
# poetry
|
| 150 |
+
# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
|
| 151 |
+
# This is especially recommended for binary packages to ensure reproducibility, and is more
|
| 152 |
+
# commonly ignored for libraries.
|
| 153 |
+
# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
|
| 154 |
+
#poetry.lock
|
| 155 |
+
|
| 156 |
+
# pdm
|
| 157 |
+
# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
|
| 158 |
+
#pdm.lock
|
| 159 |
+
# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
|
| 160 |
+
# in version control.
|
| 161 |
+
# https://pdm.fming.dev/#use-with-ide
|
| 162 |
+
.pdm.toml
|
| 163 |
+
|
| 164 |
+
# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
|
| 165 |
+
__pypackages__/
|
| 166 |
+
|
| 167 |
+
# Celery stuff
|
| 168 |
+
celerybeat-schedule
|
| 169 |
+
celerybeat.pid
|
| 170 |
+
|
| 171 |
+
# SageMath parsed files
|
| 172 |
+
*.sage.py
|
| 173 |
+
|
| 174 |
+
# Environments
|
| 175 |
+
.env
|
| 176 |
+
.venv
|
| 177 |
+
env/
|
| 178 |
+
venv/
|
| 179 |
+
ENV/
|
| 180 |
+
env.bak/
|
| 181 |
+
venv.bak/
|
| 182 |
+
|
| 183 |
+
# Spyder project settings
|
| 184 |
+
.spyderproject
|
| 185 |
+
.spyproject
|
| 186 |
+
|
| 187 |
+
# Rope project settings
|
| 188 |
+
.ropeproject
|
| 189 |
+
|
| 190 |
+
# mkdocs documentation
|
| 191 |
+
/site
|
| 192 |
+
|
| 193 |
+
# mypy
|
| 194 |
+
.mypy_cache/
|
| 195 |
+
.dmypy.json
|
| 196 |
+
dmypy.json
|
| 197 |
+
|
| 198 |
+
# Pyre type checker
|
| 199 |
+
.pyre/
|
| 200 |
+
|
| 201 |
+
# pytype static type analyzer
|
| 202 |
+
.pytype/
|
| 203 |
+
|
| 204 |
+
# Cython debug symbols
|
| 205 |
+
cython_debug/
|
| 206 |
+
|
| 207 |
+
# PyCharm
|
| 208 |
+
# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
|
| 209 |
+
# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
|
| 210 |
+
# and can be added to the global gitignore or merged into this file. For a more nuclear
|
| 211 |
+
# option (not recommended) you can uncomment the following to ignore the entire idea folder.
|
| 212 |
+
#.idea/
|
| 213 |
+
|
| 214 |
+
### Python Patch ###
|
| 215 |
+
# Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration
|
| 216 |
+
poetry.toml
|
| 217 |
+
|
| 218 |
+
# ruff
|
| 219 |
+
.ruff_cache/
|
| 220 |
+
|
| 221 |
+
# LSP config files
|
| 222 |
+
pyrightconfig.json
|
| 223 |
+
|
| 224 |
+
### Windows ###
|
| 225 |
+
# Windows thumbnail cache files
|
| 226 |
+
Thumbs.db
|
| 227 |
+
Thumbs.db:encryptable
|
| 228 |
+
ehthumbs.db
|
| 229 |
+
ehthumbs_vista.db
|
| 230 |
+
|
| 231 |
+
# Dump file
|
| 232 |
+
*.stackdump
|
| 233 |
+
|
| 234 |
+
# Folder config file
|
| 235 |
+
[Dd]esktop.ini
|
| 236 |
+
|
| 237 |
+
# Recycle Bin used on file shares
|
| 238 |
+
$RECYCLE.BIN/
|
| 239 |
+
|
| 240 |
+
# Windows Installer files
|
| 241 |
+
*.cab
|
| 242 |
+
*.msi
|
| 243 |
+
*.msix
|
| 244 |
+
*.msm
|
| 245 |
+
*.msp
|
| 246 |
+
|
| 247 |
+
# Windows shortcuts
|
| 248 |
+
*.lnk
|
| 249 |
+
|
| 250 |
+
# End of https://www.toptal.com/developers/gitignore/api/linux,macos,windows,python
|
LICENSE
ADDED
|
@@ -0,0 +1,21 @@
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|
|
| 1 |
+
MIT License
|
| 2 |
+
|
| 3 |
+
Copyright (c) 2025 Adam Thorpe
|
| 4 |
+
|
| 5 |
+
Permission is hereby granted, free of charge, to any person obtaining a copy
|
| 6 |
+
of this software and associated documentation files (the "Software"), to deal
|
| 7 |
+
in the Software without restriction, including without limitation the rights
|
| 8 |
+
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
| 9 |
+
copies of the Software, and to permit persons to whom the Software is
|
| 10 |
+
furnished to do so, subject to the following conditions:
|
| 11 |
+
|
| 12 |
+
The above copyright notice and this permission notice shall be included in all
|
| 13 |
+
copies or substantial portions of the Software.
|
| 14 |
+
|
| 15 |
+
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
| 16 |
+
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
| 17 |
+
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
| 18 |
+
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
| 19 |
+
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
| 20 |
+
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
| 21 |
+
SOFTWARE.
|
README.md
ADDED
|
@@ -0,0 +1,136 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Schrödinger Equation Dataset
|
| 2 |
+
|
| 3 |
+
Numerical solutions to the 1D time-dependent Schrödinger equation with harmonic oscillator potential.
|
| 4 |
+
|
| 5 |
+

|
| 6 |
+
|
| 7 |
+
## Equation
|
| 8 |
+
|
| 9 |
+
**Time-dependent Schrödinger equation**:
|
| 10 |
+
```
|
| 11 |
+
iℏ ∂ψ/∂t = Ĥψ
|
| 12 |
+
```
|
| 13 |
+
|
| 14 |
+
where the Hamiltonian is:
|
| 15 |
+
```
|
| 16 |
+
Ĥ = -ℏ²/2m ∇² + V(x)
|
| 17 |
+
```
|
| 18 |
+
|
| 19 |
+
**Harmonic oscillator potential**:
|
| 20 |
+
```
|
| 21 |
+
V(x) = ½mω²x²
|
| 22 |
+
```
|
| 23 |
+
|
| 24 |
+
The complex wavefunction ψ = ψᵣ + iψᵢ is split into real and imaginary parts:
|
| 25 |
+
- Real part: ∂ψᵣ/∂t = (ℏ/2m)∇²ψᵢ - V(x)ψᵢ/ℏ
|
| 26 |
+
- Imaginary part: ∂ψᵢ/∂t = -(ℏ/2m)∇²ψᵣ + V(x)ψᵣ/ℏ
|
| 27 |
+
|
| 28 |
+
## Variables
|
| 29 |
+
|
| 30 |
+
The dataset returns a dictionary with the following fields:
|
| 31 |
+
|
| 32 |
+
### Coordinates
|
| 33 |
+
- `spatial_coordinates`: `(Nx,)` - 1D spatial grid points x ∈ [-Lx/2, Lx/2]
|
| 34 |
+
- `time_coordinates`: `(time_steps,)` - Time evolution points
|
| 35 |
+
|
| 36 |
+
### Solution Fields
|
| 37 |
+
- `psi_r_initial`: `(Nx,)` - Real part of initial wavefunction
|
| 38 |
+
- `psi_i_initial`: `(Nx,)` - Imaginary part of initial wavefunction
|
| 39 |
+
- `psi_r_trajectory`: `(time_steps, Nx)` - Real part evolution
|
| 40 |
+
- `psi_i_trajectory`: `(time_steps, Nx)` - Imaginary part evolution
|
| 41 |
+
- `state_trajectory`: `(time_steps, 2*Nx)` - Concatenated [ψᵣ, ψᵢ] for ML
|
| 42 |
+
- `probability_density`: `(time_steps, Nx)` - |ψ|² probability density
|
| 43 |
+
|
| 44 |
+
### Physical Quantities
|
| 45 |
+
- `potential`: `(Nx,)` - Harmonic oscillator potential V(x) = ½mω²x²
|
| 46 |
+
- `total_energy`: `(time_steps,)` - Total energy over time (conservation check)
|
| 47 |
+
|
| 48 |
+
### Physical Parameters
|
| 49 |
+
- `hbar`: Reduced Planck constant
|
| 50 |
+
- `mass`: Particle mass
|
| 51 |
+
- `omega`: Harmonic oscillator frequency
|
| 52 |
+
|
| 53 |
+
## Dataset Parameters
|
| 54 |
+
|
| 55 |
+
- **Domain**: x ∈ [-10, 10] (symmetric around origin for harmonic oscillator)
|
| 56 |
+
- **Grid points**: Nx = 256 (spectral resolution with Fourier basis)
|
| 57 |
+
- **Time range**: [0, 2.0] (sufficient to see wave packet oscillations)
|
| 58 |
+
- **Spatial resolution**: Δx ≈ 0.078 (domain length / grid points)
|
| 59 |
+
- **Temporal resolution**: Δt = 1e-3 (RK4 time stepping)
|
| 60 |
+
|
| 61 |
+
### Physical Parameters
|
| 62 |
+
- **Reduced Planck constant**: ℏ = 1.0
|
| 63 |
+
- **Particle mass**: m = 1.0
|
| 64 |
+
- **Harmonic oscillator frequency**: ω = 1.0
|
| 65 |
+
- **Boundary conditions**: Periodic (suitable for localized wave packets)
|
| 66 |
+
|
| 67 |
+
### Initial Conditions
|
| 68 |
+
- **Wave packet type**: Gaussian wave packets with random parameters
|
| 69 |
+
- **Center position**: x₀ ∼ Uniform([-5, 5])
|
| 70 |
+
- **Wave packet width**: σ ∼ Uniform([0.5, 2.0])
|
| 71 |
+
- **Initial momentum**: k₀ ∼ Uniform([-2.0, 2.0])
|
| 72 |
+
- **Amplitude**: A ∼ Uniform([0.5, 2.0]) (normalized after generation)
|
| 73 |
+
|
| 74 |
+
## Physical Context
|
| 75 |
+
|
| 76 |
+
This dataset simulates **quantum harmonic oscillator dynamics** governed by the time-dependent Schrödinger equation. The equation models the quantum mechanical evolution of a particle in a harmonic potential well V(x) = ½mω²x².
|
| 77 |
+
|
| 78 |
+
**Key Physical Phenomena**:
|
| 79 |
+
- **Wave packet oscillation**: Gaussian wave packets oscillate back and forth in the harmonic potential
|
| 80 |
+
- **Quantum tunneling**: Wave function can extend into classically forbidden regions
|
| 81 |
+
- **Energy quantization**: Total energy is conserved and quantized in bound states
|
| 82 |
+
- **Probability conservation**: |ψ|² integrates to 1 at all times
|
| 83 |
+
- **Phase evolution**: Real and imaginary parts evolve with quantum phase relationships
|
| 84 |
+
|
| 85 |
+
**Applications**:
|
| 86 |
+
- **Quantum mechanics education**: Fundamental model system in quantum physics courses
|
| 87 |
+
- **Atomic physics**: Models trapped atoms in harmonic potentials (laser cooling, optical traps)
|
| 88 |
+
- **Quantum optics**: Describes coherent states and squeezed states of light
|
| 89 |
+
- **Neural operator learning**: Provides rich training data for physics-informed machine learning
|
| 90 |
+
- **Bose-Einstein condensates**: Mean-field dynamics in harmonic traps
|
| 91 |
+
|
| 92 |
+
## Usage
|
| 93 |
+
|
| 94 |
+
```python
|
| 95 |
+
from dataset import SchrodingerDataset
|
| 96 |
+
|
| 97 |
+
# Create dataset
|
| 98 |
+
dataset = SchrodingerDataset(
|
| 99 |
+
Lx=20.0, # Domain size
|
| 100 |
+
Nx=256, # Grid resolution
|
| 101 |
+
hbar=1.0, mass=1.0, omega=1.0, # Physical parameters
|
| 102 |
+
stop_sim_time=2.0, # Simulation time
|
| 103 |
+
timestep=1e-3
|
| 104 |
+
)
|
| 105 |
+
|
| 106 |
+
# Generate a sample
|
| 107 |
+
sample = next(iter(dataset))
|
| 108 |
+
|
| 109 |
+
# Access solution data
|
| 110 |
+
x = sample["spatial_coordinates"] # Spatial grid
|
| 111 |
+
t = sample["time_coordinates"] # Time points
|
| 112 |
+
psi_r = sample["psi_r_trajectory"] # Real part evolution
|
| 113 |
+
psi_i = sample["psi_i_trajectory"] # Imaginary part evolution
|
| 114 |
+
state = sample["state_trajectory"] # Combined [ψᵣ, ψᵢ] for ML
|
| 115 |
+
prob = sample["probability_density"] # |ψ|² probability
|
| 116 |
+
energy = sample["total_energy"] # Energy conservation
|
| 117 |
+
```
|
| 118 |
+
|
| 119 |
+
## Visualization
|
| 120 |
+
|
| 121 |
+
Run the plotting scripts to visualize samples:
|
| 122 |
+
|
| 123 |
+
```bash
|
| 124 |
+
python plot_sample.py # Static visualization
|
| 125 |
+
python plot_animation.py # Animated evolution
|
| 126 |
+
```
|
| 127 |
+
|
| 128 |
+
## Data Generation
|
| 129 |
+
|
| 130 |
+
Generate the full dataset:
|
| 131 |
+
|
| 132 |
+
```bash
|
| 133 |
+
python generate_data.py
|
| 134 |
+
```
|
| 135 |
+
|
| 136 |
+
This creates train/test splits saved as chunked parquet files in the `data/` directory.
|
data/test-00000-of-00002.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:198996730dc120415309f4c34901d1ebdab5fa228adec1f5b06023027226599b
|
| 3 |
+
size 43505176
|
data/test-00001-of-00002.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:3ecdbf32bdc2ad1d4b646c77657678647f66dc2f020467c610f75f07e6694da5
|
| 3 |
+
size 43522059
|
data/train-00000-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:21c36efd23340874c460515f803c360528eaef09328806b91ff314fad780c1bf
|
| 3 |
+
size 43470185
|
data/train-00001-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:ea82a9f89ff789c35fea227fd006f13599d48e15680a4965a685c4dcabed4041
|
| 3 |
+
size 43482115
|
data/train-00002-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:ed12c190977bc5a4b5c1ecc8ace79f5f6f4b51b045a5fc232eb8c2c512579a3d
|
| 3 |
+
size 43487667
|
data/train-00003-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:686ce1fecc0a108f8cdb9b0fecaf5f44afa02c025825801ebcaf79a2ebc4b169
|
| 3 |
+
size 43500716
|
data/train-00004-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:df7401ed8e4c1eb1508ad7aa5eb289c70f7240926eebf2582ac34c7962003434
|
| 3 |
+
size 43503940
|
data/train-00005-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
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oid sha256:0e23fa81d2a55125c1e5816acbe697c759d7e4c1e640cc518d08fa0a159c5dcf
|
| 3 |
+
size 43496416
|
data/train-00006-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:9f3581cf66099455624e3d61ab9718599b7bf4bdf4be58b84648bf94c207ae26
|
| 3 |
+
size 43502140
|
data/train-00007-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:fa4afc017d37d4ed5467c4eac7e11499db37b5cece0a70d9a64df9a6e8fff472
|
| 3 |
+
size 43474362
|
data/train-00008-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:df1d887d8bf42f4d5220372ae2adbc5c2bd46965cc18d61e6960ecc8580c5e51
|
| 3 |
+
size 43489652
|
data/train-00009-of-00010.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
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+
oid sha256:64be8b11724925526eedc4126e50b401b05d72fd24c2a70bb96334a94ca1f76a
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size 43500408
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dataset.py
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|
| 1 |
+
"""
|
| 2 |
+
1D Time-Dependent Schrödinger Equation Dataset with Harmonic Oscillator Potential.
|
| 3 |
+
|
| 4 |
+
Solves the time-dependent Schrödinger equation:
|
| 5 |
+
iℏ ∂ψ/∂t = Ĥψ
|
| 6 |
+
where Ĥ = -ℏ²/2m ∇² + V(x) and V(x) = ½mω²x²
|
| 7 |
+
|
| 8 |
+
The complex wavefunction ψ = ψᵣ + iψᵢ is split into real and imaginary parts,
|
| 9 |
+
which are evolved separately and concatenated into a 2×Nx state vector.
|
| 10 |
+
|
| 11 |
+
Physical applications: quantum mechanics, atom optics, Bose-Einstein condensates.
|
| 12 |
+
"""
|
| 13 |
+
|
| 14 |
+
import numpy as np
|
| 15 |
+
from torch.utils.data import IterableDataset
|
| 16 |
+
|
| 17 |
+
import dedalus.public as d3
|
| 18 |
+
import logging
|
| 19 |
+
|
| 20 |
+
logger = logging.getLogger(__name__)
|
| 21 |
+
|
| 22 |
+
|
| 23 |
+
def generate_gaussian_wave_packet(x, x0, sigma, k0, amplitude=1.0):
|
| 24 |
+
"""
|
| 25 |
+
Generate a Gaussian wave packet initial condition for the Schrödinger equation.
|
| 26 |
+
|
| 27 |
+
Creates a localized wave packet: ψ(x) = A * exp[-(x-x₀)²/(2σ²)] * exp(ik₀x)
|
| 28 |
+
This represents a particle localized around position x₀ with momentum k₀.
|
| 29 |
+
|
| 30 |
+
Args:
|
| 31 |
+
x: Spatial coordinates array
|
| 32 |
+
x0: Center position of the wave packet
|
| 33 |
+
sigma: Width parameter (standard deviation of Gaussian envelope)
|
| 34 |
+
k0: Initial momentum (wave number)
|
| 35 |
+
amplitude: Amplitude scaling factor
|
| 36 |
+
|
| 37 |
+
Returns:
|
| 38 |
+
Complex wavefunction ψ = ψᵣ + iψᵢ as numpy array
|
| 39 |
+
|
| 40 |
+
Notes:
|
| 41 |
+
The wave packet satisfies the normalization ∫|ψ|²dx = 1 after normalization
|
| 42 |
+
in the calling code.
|
| 43 |
+
"""
|
| 44 |
+
envelope = amplitude * np.exp(-(x - x0)**2 / (2 * sigma**2))
|
| 45 |
+
phase = np.exp(1j * k0 * x)
|
| 46 |
+
return envelope * phase
|
| 47 |
+
|
| 48 |
+
|
| 49 |
+
class SchrodingerDataset(IterableDataset):
|
| 50 |
+
"""
|
| 51 |
+
Dataset for 1D time-dependent Schrödinger equation with harmonic oscillator potential.
|
| 52 |
+
|
| 53 |
+
This dataset generates solutions to the quantum harmonic oscillator by solving:
|
| 54 |
+
iℏ ∂ψ/∂t = Ĥψ
|
| 55 |
+
where the Hamiltonian is:
|
| 56 |
+
Ĥ = -ℏ²/2m ∇² + V(x)
|
| 57 |
+
and the potential is:
|
| 58 |
+
V(x) = ½mω²x²
|
| 59 |
+
|
| 60 |
+
The complex wavefunction ψ = ψᵣ + iψᵢ is split into real and imaginary parts
|
| 61 |
+
that are evolved separately using coupled PDEs:
|
| 62 |
+
∂ψᵣ/∂t = (ℏ/2m)∇²ψᵢ - V(x)ψᵢ/ℏ
|
| 63 |
+
∂ψᵢ/∂t = -(ℏ/2m)∇²ψᵣ + V(x)ψᵣ/ℏ
|
| 64 |
+
|
| 65 |
+
For machine learning applications, the solution is provided as:
|
| 66 |
+
- Individual trajectories: ψᵣ(x,t) and ψᵢ(x,t)
|
| 67 |
+
- Combined state vector: [ψᵣ, ψᵢ] with shape (2×Nx,)
|
| 68 |
+
- Probability density: |ψ|² = ψᵣ² + ψᵢ²
|
| 69 |
+
- Energy conservation: Total energy ⟨ψ|Ĥ|ψ⟩
|
| 70 |
+
|
| 71 |
+
Physical Applications:
|
| 72 |
+
- Quantum mechanics education and visualization
|
| 73 |
+
- Trapped atom dynamics in optical/magnetic traps
|
| 74 |
+
- Bose-Einstein condensate mean-field dynamics
|
| 75 |
+
- Neural operator learning for quantum systems
|
| 76 |
+
|
| 77 |
+
Mathematical Properties:
|
| 78 |
+
- Unitary evolution (probability conservation)
|
| 79 |
+
- Energy conservation in the absence of dissipation
|
| 80 |
+
- Spectral accuracy via Fourier pseudospectral methods
|
| 81 |
+
"""
|
| 82 |
+
def __init__(
|
| 83 |
+
self,
|
| 84 |
+
# Domain parameters
|
| 85 |
+
Lx=20.0, # Domain length (centered around 0)
|
| 86 |
+
Nx=1024, # Number of grid points
|
| 87 |
+
|
| 88 |
+
# Physical parameters
|
| 89 |
+
hbar=1.0, # Reduced Planck constant
|
| 90 |
+
mass=1.0, # Particle mass
|
| 91 |
+
omega=1.0, # Harmonic oscillator frequency
|
| 92 |
+
|
| 93 |
+
# Solver parameters
|
| 94 |
+
dealias=3/2, # Dealiasing factor
|
| 95 |
+
stop_sim_time=5.0, # Final simulation time
|
| 96 |
+
timestep=1e-3, # Time step size
|
| 97 |
+
timestepper=d3.RK443, # Time integration scheme
|
| 98 |
+
dtype=np.float64,
|
| 99 |
+
):
|
| 100 |
+
"""
|
| 101 |
+
Initialize Schrödinger equation dataset with harmonic oscillator potential.
|
| 102 |
+
|
| 103 |
+
Sets up the numerical infrastructure to solve the time-dependent Schrödinger
|
| 104 |
+
equation using Dedalus spectral methods. Creates Fourier basis functions
|
| 105 |
+
for spatial derivatives and configures the coupled PDE system for real
|
| 106 |
+
and imaginary parts of the wavefunction.
|
| 107 |
+
|
| 108 |
+
Mathematical Setup:
|
| 109 |
+
Domain: x ∈ [-Lx/2, Lx/2] with periodic boundary conditions
|
| 110 |
+
Grid: Nx Fourier modes with dealiasing for nonlinear terms
|
| 111 |
+
Time Integration: High-order Runge-Kutta schemes (RK443 recommended)
|
| 112 |
+
|
| 113 |
+
Args:
|
| 114 |
+
Lx: Spatial domain length. Domain extends from -Lx/2 to +Lx/2.
|
| 115 |
+
Should be large enough to contain the wave packet throughout
|
| 116 |
+
the simulation without significant boundary effects.
|
| 117 |
+
Nx: Number of Fourier modes. Higher values give better spatial
|
| 118 |
+
resolution. Recommended: 256-1024 for typical simulations.
|
| 119 |
+
hbar: Reduced Planck constant (ℏ). In natural units, often set to 1.
|
| 120 |
+
mass: Particle mass (m). Controls kinetic energy scale.
|
| 121 |
+
omega: Harmonic oscillator frequency (ω). Sets potential energy scale
|
| 122 |
+
and oscillation period T = 2π/ω.
|
| 123 |
+
dealias: Dealiasing factor for spectral methods. 3/2 removes aliasing
|
| 124 |
+
for quadratic nonlinearities (standard for Schrödinger eq).
|
| 125 |
+
stop_sim_time: Maximum simulation time. Should be several oscillation
|
| 126 |
+
periods (>> 2π/ω) to see full dynamics.
|
| 127 |
+
timestep: Time step size. Should satisfy CFL condition for stability.
|
| 128 |
+
Recommended: dt ≤ 0.01 * (2π/ω) for accuracy.
|
| 129 |
+
timestepper: Dedalus time integration scheme. RK443 (4th order)
|
| 130 |
+
provides good accuracy/stability balance.
|
| 131 |
+
dtype: Floating point precision. np.float64 recommended for accuracy.
|
| 132 |
+
|
| 133 |
+
Raises:
|
| 134 |
+
ValueError: If domain or grid parameters are invalid.
|
| 135 |
+
ImportError: If Dedalus is not properly installed.
|
| 136 |
+
"""
|
| 137 |
+
super().__init__()
|
| 138 |
+
|
| 139 |
+
# Basic parameter validation
|
| 140 |
+
if Lx <= 0:
|
| 141 |
+
raise ValueError("Domain length Lx must be positive")
|
| 142 |
+
if Nx <= 0 or not isinstance(Nx, int):
|
| 143 |
+
raise ValueError("Grid points Nx must be a positive integer")
|
| 144 |
+
if hbar <= 0:
|
| 145 |
+
raise ValueError("Reduced Planck constant hbar must be positive")
|
| 146 |
+
if mass <= 0:
|
| 147 |
+
raise ValueError("Particle mass must be positive")
|
| 148 |
+
if omega <= 0:
|
| 149 |
+
raise ValueError("Oscillator frequency omega must be positive")
|
| 150 |
+
if timestep <= 0:
|
| 151 |
+
raise ValueError("Time step must be positive")
|
| 152 |
+
if stop_sim_time <= 0:
|
| 153 |
+
raise ValueError("Simulation time must be positive")
|
| 154 |
+
|
| 155 |
+
# Store domain and grid parameters
|
| 156 |
+
self.Lx = Lx # Physical domain size [-Lx/2, Lx/2]
|
| 157 |
+
self.Nx = Nx # Number of Fourier modes for spatial resolution
|
| 158 |
+
|
| 159 |
+
# Store physical parameters (in natural units where convenient)
|
| 160 |
+
self.hbar = hbar # Reduced Planck constant - sets quantum scale
|
| 161 |
+
self.mass = mass # Particle mass - affects kinetic energy
|
| 162 |
+
self.omega = omega # Oscillator frequency - sets energy and time scales
|
| 163 |
+
|
| 164 |
+
# Store numerical solver parameters
|
| 165 |
+
self.dealias = dealias # Prevents aliasing in spectral methods
|
| 166 |
+
self.stop_sim_time = stop_sim_time # Total evolution time
|
| 167 |
+
self.timestep = timestep # Time step (must satisfy CFL condition)
|
| 168 |
+
self.timestepper = timestepper # Runge-Kutta integration scheme
|
| 169 |
+
self.dtype = dtype # Floating point precision
|
| 170 |
+
|
| 171 |
+
# Setup Dedalus spectral method infrastructure
|
| 172 |
+
self.xcoord = d3.Coordinate("x") # Define spatial coordinate
|
| 173 |
+
self.dist = d3.Distributor(self.xcoord, dtype=dtype) # Handle parallel distribution
|
| 174 |
+
|
| 175 |
+
# Create Fourier basis: periodic functions on [-Lx/2, Lx/2]
|
| 176 |
+
# RealFourier uses cosines/sines, ideal for real-valued problems
|
| 177 |
+
self.xbasis = d3.RealFourier(self.xcoord, size=Nx, bounds=(-Lx/2, Lx/2), dealias=dealias)
|
| 178 |
+
|
| 179 |
+
# Generate physical grid points for visualization and analysis
|
| 180 |
+
self.x = self.dist.local_grid(self.xbasis)
|
| 181 |
+
|
| 182 |
+
def __iter__(self):
|
| 183 |
+
"""
|
| 184 |
+
Generate infinite samples from the dataset.
|
| 185 |
+
|
| 186 |
+
Creates diverse quantum wave packet initial conditions by randomly sampling
|
| 187 |
+
Gaussian wave packet parameters. Each sample represents a different physical
|
| 188 |
+
scenario with varying localization, momentum, and energy.
|
| 189 |
+
|
| 190 |
+
Initial Condition Generation:
|
| 191 |
+
1. Random wave packet center x₀ ~ U[-Lx/4, Lx/4]
|
| 192 |
+
2. Random width σ ~ U[0.5, 2.0] (controls localization)
|
| 193 |
+
3. Random momentum k₀ ~ U[-2.0, 2.0] (initial velocity)
|
| 194 |
+
4. Random amplitude A ~ U[0.5, 2.0] (before normalization)
|
| 195 |
+
5. Normalize to ensure ∫|ψ|²dx = 1 (probability conservation)
|
| 196 |
+
|
| 197 |
+
Physics:
|
| 198 |
+
- Narrow wave packets (small σ) are highly localized but spread quickly
|
| 199 |
+
- Wide wave packets (large σ) are delocalized but maintain shape longer
|
| 200 |
+
- Higher |k₀| gives faster initial motion and higher kinetic energy
|
| 201 |
+
- All initial conditions are proper quantum states (normalized)
|
| 202 |
+
|
| 203 |
+
Yields:
|
| 204 |
+
Dict containing complete solution trajectory and physical quantities
|
| 205 |
+
"""
|
| 206 |
+
while True:
|
| 207 |
+
# Generate random physical parameters for wave packet diversity
|
| 208 |
+
# Center position: avoid boundaries to prevent edge effects
|
| 209 |
+
x0 = np.random.uniform(-self.Lx/4, self.Lx/4)
|
| 210 |
+
|
| 211 |
+
# Wave packet width: balance between localization and numerical stability
|
| 212 |
+
sigma = np.random.uniform(0.5, 2.0)
|
| 213 |
+
|
| 214 |
+
# Initial momentum: determines kinetic energy and motion direction
|
| 215 |
+
k0 = np.random.uniform(-2.0, 2.0)
|
| 216 |
+
|
| 217 |
+
# Initial amplitude: will be normalized, but affects relative scales
|
| 218 |
+
amplitude = np.random.uniform(0.5, 2.0)
|
| 219 |
+
|
| 220 |
+
# Generate complex Gaussian wave packet: ψ(x) = A*exp[-(x-x₀)²/2σ²]*exp(ik₀x)
|
| 221 |
+
# This represents a localized particle with definite momentum
|
| 222 |
+
# Use full grid from Dedalus (includes dealiasing padding)
|
| 223 |
+
x_grid = self.x.ravel() # Get full dealiased grid for initialization
|
| 224 |
+
psi_init = generate_gaussian_wave_packet(
|
| 225 |
+
x_grid, x0, sigma, k0, amplitude
|
| 226 |
+
)
|
| 227 |
+
|
| 228 |
+
# Normalize wavefunction to satisfy quantum probability condition ∫|ψ|²dx = 1
|
| 229 |
+
# This ensures proper quantum state throughout evolution
|
| 230 |
+
norm = np.sqrt(np.trapezoid(np.abs(psi_init)**2, x_grid))
|
| 231 |
+
psi_init /= norm
|
| 232 |
+
|
| 233 |
+
# Solve time-dependent Schrödinger equation and return full solution data
|
| 234 |
+
# Pass the complex initial condition (splitting happens in solve method)
|
| 235 |
+
yield self.solve(psi_init)
|
| 236 |
+
|
| 237 |
+
def solve(self, initial_condition):
|
| 238 |
+
"""
|
| 239 |
+
Solve the time-dependent Schrödinger equation using spectral methods.
|
| 240 |
+
|
| 241 |
+
Integrates the coupled PDE system forward in time using high-order
|
| 242 |
+
Runge-Kutta methods, storing snapshots of the solution and computing
|
| 243 |
+
physical quantities like energy for validation.
|
| 244 |
+
|
| 245 |
+
Numerical Method:
|
| 246 |
+
- Spectral differentiation for spatial derivatives (machine precision)
|
| 247 |
+
- High-order Runge-Kutta time stepping (4th order RK443)
|
| 248 |
+
- Adaptive time step control via Dedalus CFL condition
|
| 249 |
+
- Energy monitoring for conservation verification
|
| 250 |
+
|
| 251 |
+
Args:
|
| 252 |
+
initial_condition: Complex initial wavefunction ψ(x,0) = ψᵣ + iψᵢ
|
| 253 |
+
|
| 254 |
+
Returns:
|
| 255 |
+
Dictionary containing:
|
| 256 |
+
- Solution trajectories: ψᵣ(x,t), ψᵢ(x,t), |ψ(x,t)|²
|
| 257 |
+
- Coordinate arrays: spatial grid x, time points t
|
| 258 |
+
- ML-ready state vector: concatenated [ψᵣ, ψᵢ]
|
| 259 |
+
- Physical quantities: total energy, potential V(x)
|
| 260 |
+
- System parameters: ℏ, m, ω for reproducibility
|
| 261 |
+
|
| 262 |
+
Note:
|
| 263 |
+
Energy should be conserved to within numerical precision.
|
| 264 |
+
Large energy drift indicates time step is too large or
|
| 265 |
+
simulation time exceeds numerical stability limits.
|
| 266 |
+
"""
|
| 267 |
+
# Setup PDE fields for real and imaginary parts of wavefunction
|
| 268 |
+
# These will store ψᵣ(x,t) and ψᵢ(x,t) at each time step
|
| 269 |
+
psi_r = self.dist.Field(name="psi_r", bases=self.xbasis) # Real part ψᵣ
|
| 270 |
+
psi_i = self.dist.Field(name="psi_i", bases=self.xbasis) # Imaginary part ψᵢ
|
| 271 |
+
|
| 272 |
+
# Define spatial derivative operator for kinetic energy term
|
| 273 |
+
# d/dx operator using spectral differentiation (exact for polynomials)
|
| 274 |
+
dx = lambda A: d3.Differentiate(A, self.xcoord)
|
| 275 |
+
|
| 276 |
+
# Create harmonic oscillator potential V(x) = ½mω²x²
|
| 277 |
+
# This confines the quantum particle to oscillate around x=0
|
| 278 |
+
V = self.dist.Field(name="V", bases=self.xbasis)
|
| 279 |
+
V['g'] = 0.5 * self.mass * (self.omega * self.x)**2 # Set grid values
|
| 280 |
+
|
| 281 |
+
# Setup coupled PDE system for real and imaginary parts
|
| 282 |
+
#
|
| 283 |
+
# Starting from the Schrödinger equation: iℏ ∂ψ/∂t = Ĥψ
|
| 284 |
+
# where Ĥ = -ℏ²/2m ∇² + V(x) and ψ = ψᵣ + iψᵢ
|
| 285 |
+
#
|
| 286 |
+
# Substituting ψ = ψᵣ + iψᵢ and separating real/imaginary parts:
|
| 287 |
+
# Real part: ∂ψᵣ/∂t = (ℏ/2m)∇²ψᵢ - V(x)ψᵢ/ℏ
|
| 288 |
+
# Imaginary part: ∂ψᵢ/∂t = -(ℏ/2m)∇²ψᵣ + V(x)ψᵣ/ℏ
|
| 289 |
+
#
|
| 290 |
+
# These equations are coupled: ψᵣ evolution depends on ψᵢ and vice versa
|
| 291 |
+
# This preserves the unitary evolution and probability conservation
|
| 292 |
+
|
| 293 |
+
# Create namespace with all variables for Dedalus equation parser
|
| 294 |
+
hbar = self.hbar
|
| 295 |
+
mass = self.mass
|
| 296 |
+
namespace = locals() # Include all local variables (hbar, mass, dx, etc.)
|
| 297 |
+
|
| 298 |
+
# Define the initial value problem with two coupled fields
|
| 299 |
+
problem = d3.IVP([psi_r, psi_i], namespace=namespace)
|
| 300 |
+
|
| 301 |
+
# Add the coupled evolution equations
|
| 302 |
+
# Note: dx(dx(field)) computes the second derivative ∇²field
|
| 303 |
+
problem.add_equation("dt(psi_r) - (hbar/(2*mass))*dx(dx(psi_i)) = - V*psi_i/hbar")
|
| 304 |
+
problem.add_equation("dt(psi_i) + (hbar/(2*mass))*dx(dx(psi_r)) = V*psi_r/hbar")
|
| 305 |
+
|
| 306 |
+
# Split complex initial condition into real and imaginary parts
|
| 307 |
+
# This converts ψ = ψᵣ + iψᵢ to two real-valued fields for the PDE solver
|
| 308 |
+
psi_r_init = np.real(initial_condition) # Real component ψᵣ(x,0)
|
| 309 |
+
psi_i_init = np.imag(initial_condition) # Imaginary component ψᵢ(x,0)
|
| 310 |
+
|
| 311 |
+
# Set initial conditions in Dedalus fields
|
| 312 |
+
# ['g'] accessor sets grid point values directly
|
| 313 |
+
psi_r['g'] = psi_r_init # Initialize real part ψᵣ(x,0)
|
| 314 |
+
psi_i['g'] = psi_i_init # Initialize imaginary part ψᵢ(x,0)
|
| 315 |
+
|
| 316 |
+
# Build time integrator from the PDE system
|
| 317 |
+
# This compiles the equations and sets up the Runge-Kutta stepper
|
| 318 |
+
solver = problem.build_solver(self.timestepper)
|
| 319 |
+
solver.stop_sim_time = self.stop_sim_time # Set maximum evolution time
|
| 320 |
+
|
| 321 |
+
# Initialize storage arrays for solution snapshots
|
| 322 |
+
# ['g', 1] gets grid values in proper layout for post-processing
|
| 323 |
+
psi_r_list = [psi_r['g', 1].copy()] # Store ψᵣ(x,t) snapshots
|
| 324 |
+
psi_i_list = [psi_i['g', 1].copy()] # Store ψᵢ(x,t) snapshots
|
| 325 |
+
t_list = [solver.sim_time] # Store corresponding time values
|
| 326 |
+
energy_list = [] # Store energy for conservation check
|
| 327 |
+
|
| 328 |
+
# Calculate initial total energy E = ⟨ψ|Ĥ|ψ⟩
|
| 329 |
+
# This should be conserved throughout the evolution (Hamiltonian is Hermitian)
|
| 330 |
+
x_1d = self.x.ravel() # Get full grid for energy calculation
|
| 331 |
+
dx = x_1d[1] - x_1d[0] # Uniform grid spacing for integration
|
| 332 |
+
energy_initial = self._compute_energy(psi_r_init, psi_i_init, V, dx)
|
| 333 |
+
energy_list.append(energy_initial)
|
| 334 |
+
|
| 335 |
+
# Main time evolution loop
|
| 336 |
+
# Save snapshots periodically to avoid memory issues while capturing dynamics
|
| 337 |
+
save_frequency = max(1, int(0.05 / self.timestep)) # Save every ~0.05 time units
|
| 338 |
+
|
| 339 |
+
while solver.proceed: # Continue until stop_sim_time reached
|
| 340 |
+
# Advance solution by one time step using Runge-Kutta
|
| 341 |
+
solver.step(self.timestep)
|
| 342 |
+
|
| 343 |
+
# Periodically store snapshots for analysis/visualization
|
| 344 |
+
if solver.iteration % save_frequency == 0:
|
| 345 |
+
# Extract current wavefunction components from Dedalus fields
|
| 346 |
+
psi_r_current = psi_r['g', 1].copy() # Current real part
|
| 347 |
+
psi_i_current = psi_i['g', 1].copy() # Current imaginary part
|
| 348 |
+
|
| 349 |
+
# Store snapshot data
|
| 350 |
+
psi_r_list.append(psi_r_current)
|
| 351 |
+
psi_i_list.append(psi_i_current)
|
| 352 |
+
t_list.append(solver.sim_time)
|
| 353 |
+
|
| 354 |
+
# Monitor energy conservation (should remain constant)
|
| 355 |
+
energy = self._compute_energy(psi_r_current, psi_i_current, V, dx)
|
| 356 |
+
energy_list.append(energy)
|
| 357 |
+
|
| 358 |
+
# Convert to numpy arrays
|
| 359 |
+
psi_r_trajectory = np.array(psi_r_list)
|
| 360 |
+
psi_i_trajectory = np.array(psi_i_list)
|
| 361 |
+
time_coordinates = np.array(t_list)
|
| 362 |
+
energy_trajectory = np.array(energy_list)
|
| 363 |
+
|
| 364 |
+
# Compute probability density |ψ|²
|
| 365 |
+
prob_density = psi_r_trajectory**2 + psi_i_trajectory**2
|
| 366 |
+
|
| 367 |
+
# Create combined state vector (concatenate real and imaginary parts)
|
| 368 |
+
state_trajectory = np.concatenate([psi_r_trajectory, psi_i_trajectory], axis=1)
|
| 369 |
+
|
| 370 |
+
# Compute potential energy at grid points
|
| 371 |
+
V_values = V['g', 1].copy()
|
| 372 |
+
|
| 373 |
+
return {
|
| 374 |
+
# Coordinates
|
| 375 |
+
"spatial_coordinates": self.x.ravel(),
|
| 376 |
+
"time_coordinates": time_coordinates,
|
| 377 |
+
|
| 378 |
+
# Initial conditions
|
| 379 |
+
"psi_r_initial": psi_r_init,
|
| 380 |
+
"psi_i_initial": psi_i_init,
|
| 381 |
+
|
| 382 |
+
# Solution trajectories
|
| 383 |
+
"psi_r_trajectory": psi_r_trajectory,
|
| 384 |
+
"psi_i_trajectory": psi_i_trajectory,
|
| 385 |
+
"state_trajectory": state_trajectory, # Combined (2*Nx,) for ML
|
| 386 |
+
"probability_density": prob_density, # |ψ|²
|
| 387 |
+
|
| 388 |
+
# Physical quantities
|
| 389 |
+
"potential": V_values, # Harmonic oscillator potential
|
| 390 |
+
"total_energy": energy_trajectory, # Energy conservation check
|
| 391 |
+
|
| 392 |
+
# Physical parameters
|
| 393 |
+
"hbar": self.hbar,
|
| 394 |
+
"mass": self.mass,
|
| 395 |
+
"omega": self.omega,
|
| 396 |
+
}
|
| 397 |
+
|
| 398 |
+
def _compute_energy(self, psi_r, psi_i, V_field, dx):
|
| 399 |
+
"""
|
| 400 |
+
Compute total energy of the quantum system using wavefunction components.
|
| 401 |
+
|
| 402 |
+
Calculates the expectation value of the Hamiltonian: E = ⟨ψ|Ĥ|ψ⟩
|
| 403 |
+
where Ĥ = -ℏ²/2m ∇² + V(x) is the quantum harmonic oscillator Hamiltonian.
|
| 404 |
+
|
| 405 |
+
The energy should be conserved during unitary evolution, making this
|
| 406 |
+
a crucial diagnostic for numerical accuracy and stability.
|
| 407 |
+
|
| 408 |
+
Mathematical Details:
|
| 409 |
+
Total Energy: E = T + V
|
| 410 |
+
Kinetic Energy: T = -ℏ²/2m ∫ ψ*(x) ∇²ψ(x) dx
|
| 411 |
+
Potential Energy: V = ∫ |ψ(x)|² V(x) dx
|
| 412 |
+
|
| 413 |
+
For split wavefunction ψ = ψᵣ + iψᵢ:
|
| 414 |
+
T = -ℏ²/2m ∫ [ψᵣ ∇²ψᵣ + ψᵢ ∇²ψᵢ] dx
|
| 415 |
+
V = ∫ [ψᵣ² + ψᵢ²] V(x) dx
|
| 416 |
+
|
| 417 |
+
Args:
|
| 418 |
+
psi_r: Real part of wavefunction at current time
|
| 419 |
+
psi_i: Imaginary part of wavefunction at current time
|
| 420 |
+
V_field: Potential field from Dedalus
|
| 421 |
+
dx: Spatial grid spacing for numerical integration
|
| 422 |
+
|
| 423 |
+
Returns:
|
| 424 |
+
Total energy (float): Should be conserved throughout evolution
|
| 425 |
+
|
| 426 |
+
Note:
|
| 427 |
+
Uses finite differences for spatial derivatives. For high accuracy,
|
| 428 |
+
the Dedalus spectral derivatives could be used instead, but this
|
| 429 |
+
simple approach is sufficient for energy monitoring.
|
| 430 |
+
"""
|
| 431 |
+
# Compute kinetic energy: T = -ℏ²/2m ⟨ψ|∇²ψ⟩
|
| 432 |
+
# For complex ψ = ψᵣ + iψᵢ: T = -ℏ²/2m ∫[ψᵣ∇²ψᵣ + ψᵢ∇²ψᵢ] dx
|
| 433 |
+
# Use second-order finite differences for ∇² approximation
|
| 434 |
+
psi_r_xx = np.gradient(np.gradient(psi_r, dx), dx) # ∂²ψᵣ/∂x²
|
| 435 |
+
psi_i_xx = np.gradient(np.gradient(psi_i, dx), dx) # ∂²ψᵢ/∂x²
|
| 436 |
+
|
| 437 |
+
# Integrate kinetic energy density over space
|
| 438 |
+
kinetic = -(self.hbar**2)/(2*self.mass) * np.trapezoid(
|
| 439 |
+
psi_r * psi_r_xx + psi_i * psi_i_xx, dx=dx
|
| 440 |
+
)
|
| 441 |
+
|
| 442 |
+
# Compute potential energy: V = ⟨ψ|V|ψ⟩ = ∫ |ψ(x)|² V(x) dx
|
| 443 |
+
# Probability density |ψ|² = ψᵣ² + ψᵢ² weighted by potential
|
| 444 |
+
V_values = V_field['g', 1] # Extract potential values from Dedalus field
|
| 445 |
+
potential = np.trapezoid((psi_r**2 + psi_i**2) * V_values, dx=dx)
|
| 446 |
+
|
| 447 |
+
# Total energy = kinetic + potential (should be conserved)
|
| 448 |
+
return kinetic + potential
|
generate_data.py
ADDED
|
@@ -0,0 +1,99 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#!/usr/bin/env python3
|
| 2 |
+
"""
|
| 3 |
+
Generate Schrödinger equation dataset and save to parquet files in chunks.
|
| 4 |
+
|
| 5 |
+
Creates samples of 1D time-dependent Schrödinger equation solutions
|
| 6 |
+
with harmonic oscillator potential and random Gaussian wave packet
|
| 7 |
+
initial conditions.
|
| 8 |
+
"""
|
| 9 |
+
|
| 10 |
+
import os
|
| 11 |
+
import numpy as np
|
| 12 |
+
import pyarrow as pa
|
| 13 |
+
import pyarrow.parquet as pq
|
| 14 |
+
from dataset import SchrodingerDataset
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
def generate_dataset_split(
|
| 18 |
+
split_name="train", num_samples=1000, chunk_size=100, output_dir="data"
|
| 19 |
+
):
|
| 20 |
+
"""
|
| 21 |
+
Generate a dataset split and save as chunked parquet files.
|
| 22 |
+
|
| 23 |
+
INSTRUCTIONS FOR CLAUDE:
|
| 24 |
+
- This function should work as-is for any dataset following the template
|
| 25 |
+
- Only modify the dataset instantiation below if you need custom parameters
|
| 26 |
+
"""
|
| 27 |
+
|
| 28 |
+
os.makedirs(output_dir, exist_ok=True)
|
| 29 |
+
|
| 30 |
+
# Create Schrödinger dataset with appropriate parameters
|
| 31 |
+
dataset = SchrodingerDataset(
|
| 32 |
+
Lx=20.0, # Domain length
|
| 33 |
+
Nx=256, # Grid points (reduced for faster generation)
|
| 34 |
+
hbar=1.0, # Physical parameters
|
| 35 |
+
mass=1.0,
|
| 36 |
+
omega=1.0,
|
| 37 |
+
stop_sim_time=2.0, # Shorter simulation time for dataset generation
|
| 38 |
+
timestep=1e-3,
|
| 39 |
+
)
|
| 40 |
+
|
| 41 |
+
num_chunks = (num_samples + chunk_size - 1) // chunk_size # Ceiling division
|
| 42 |
+
|
| 43 |
+
print(f"Generating {num_samples} {split_name} samples in {num_chunks} chunks...")
|
| 44 |
+
|
| 45 |
+
dataset_iter = iter(dataset)
|
| 46 |
+
chunk_data = None
|
| 47 |
+
|
| 48 |
+
for i in range(num_samples):
|
| 49 |
+
sample = next(dataset_iter)
|
| 50 |
+
|
| 51 |
+
if chunk_data is None:
|
| 52 |
+
# Initialize chunk data on first sample
|
| 53 |
+
chunk_data = {key: [] for key in sample.keys()}
|
| 54 |
+
|
| 55 |
+
# Add sample to current chunk
|
| 56 |
+
for key, value in sample.items():
|
| 57 |
+
chunk_data[key].append(value)
|
| 58 |
+
|
| 59 |
+
# Save chunk when full or at end
|
| 60 |
+
if (i + 1) % chunk_size == 0 or i == num_samples - 1:
|
| 61 |
+
chunk_idx = i // chunk_size
|
| 62 |
+
|
| 63 |
+
# Convert data to PyArrow-compatible format
|
| 64 |
+
table_data = {}
|
| 65 |
+
for key, values in chunk_data.items():
|
| 66 |
+
# Handle both arrays and scalars
|
| 67 |
+
converted_values = []
|
| 68 |
+
for value in values:
|
| 69 |
+
if hasattr(value, 'tolist'):
|
| 70 |
+
converted_values.append(value.tolist())
|
| 71 |
+
else:
|
| 72 |
+
converted_values.append(value)
|
| 73 |
+
table_data[key] = converted_values
|
| 74 |
+
|
| 75 |
+
# Convert to PyArrow table
|
| 76 |
+
table = pa.table(table_data)
|
| 77 |
+
|
| 78 |
+
# Save chunk
|
| 79 |
+
filename = f"{split_name}-{chunk_idx:05d}-of-{num_chunks:05d}.parquet"
|
| 80 |
+
filepath = os.path.join(output_dir, filename)
|
| 81 |
+
pq.write_table(table, filepath)
|
| 82 |
+
|
| 83 |
+
print(f"Saved chunk {chunk_idx + 1}/{num_chunks}: {filepath}")
|
| 84 |
+
|
| 85 |
+
# Reset for next chunk
|
| 86 |
+
chunk_data = {key: [] for key in sample.keys()}
|
| 87 |
+
|
| 88 |
+
print(f"Generated {num_samples} {split_name} samples")
|
| 89 |
+
return num_samples
|
| 90 |
+
|
| 91 |
+
|
| 92 |
+
if __name__ == "__main__":
|
| 93 |
+
np.random.seed(42)
|
| 94 |
+
|
| 95 |
+
# Generate train split
|
| 96 |
+
generate_dataset_split("train", num_samples=1000, chunk_size=100)
|
| 97 |
+
|
| 98 |
+
# Generate test split
|
| 99 |
+
generate_dataset_split("test", num_samples=200, chunk_size=100)
|
plot_animation.py
ADDED
|
@@ -0,0 +1,231 @@
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|
|
|
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|
|
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|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#!/usr/bin/env python3
|
| 2 |
+
"""
|
| 3 |
+
Generate an animation GIF of a single Schrödinger equation sample time evolution.
|
| 4 |
+
|
| 5 |
+
Animates quantum wave packet dynamics including:
|
| 6 |
+
- Real and imaginary parts of wavefunction
|
| 7 |
+
- Probability density |ψ|²
|
| 8 |
+
- Wave packet motion in harmonic potential
|
| 9 |
+
"""
|
| 10 |
+
|
| 11 |
+
import numpy as np
|
| 12 |
+
import matplotlib.pyplot as plt
|
| 13 |
+
import matplotlib.animation as animation
|
| 14 |
+
from dataset import SchrodingerDataset
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
def create_schrodinger_animation(sample, save_path="sample_animation.gif", fps=15):
|
| 18 |
+
"""Create an animation GIF from a Schrödinger sample"""
|
| 19 |
+
# Extract data
|
| 20 |
+
x = sample['spatial_coordinates']
|
| 21 |
+
t = sample['time_coordinates']
|
| 22 |
+
psi_r = sample['psi_r_trajectory']
|
| 23 |
+
psi_i = sample['psi_i_trajectory']
|
| 24 |
+
prob = sample['probability_density']
|
| 25 |
+
V = sample['potential']
|
| 26 |
+
energy = sample['total_energy']
|
| 27 |
+
|
| 28 |
+
# Set up the figure with subplots
|
| 29 |
+
fig, (ax1, ax2, ax3) = plt.subplots(3, 1, figsize=(12, 10))
|
| 30 |
+
fig.suptitle(f'Quantum Harmonic Oscillator Evolution\n' +
|
| 31 |
+
f'ℏ={sample["hbar"]}, m={sample["mass"]}, ω={sample["omega"]}',
|
| 32 |
+
fontsize=14, fontweight='bold')
|
| 33 |
+
|
| 34 |
+
# Colors for consistency
|
| 35 |
+
color_real = '#1f77b4'
|
| 36 |
+
color_imag = '#ff7f0e'
|
| 37 |
+
color_prob = '#2ca02c'
|
| 38 |
+
color_potential = '#d62728'
|
| 39 |
+
|
| 40 |
+
# Subplot 1: Wavefunction components
|
| 41 |
+
ax1.set_xlim(x[0], x[-1])
|
| 42 |
+
psi_max = max(np.max(np.abs(psi_r)), np.max(np.abs(psi_i))) * 1.1
|
| 43 |
+
ax1.set_ylim(-psi_max, psi_max)
|
| 44 |
+
ax1.set_ylabel('ψ(x,t)')
|
| 45 |
+
ax1.set_title('Wavefunction Components')
|
| 46 |
+
ax1.grid(True, alpha=0.3)
|
| 47 |
+
|
| 48 |
+
# Plot potential well (scaled for background)
|
| 49 |
+
V_scaled = V / np.max(V) * psi_max * 0.2
|
| 50 |
+
ax1.fill_between(x, -psi_max, V_scaled - psi_max, alpha=0.1, color=color_potential)
|
| 51 |
+
ax1.plot(x, V_scaled - psi_max, '--', alpha=0.5, color=color_potential, linewidth=1, label='V(x)')
|
| 52 |
+
|
| 53 |
+
real_line, = ax1.plot([], [], color=color_real, linewidth=2, label='ψᵣ(x,t)')
|
| 54 |
+
imag_line, = ax1.plot([], [], color=color_imag, linewidth=2, label='ψᵢ(x,t)')
|
| 55 |
+
ax1.legend(loc='upper right')
|
| 56 |
+
|
| 57 |
+
# Subplot 2: Probability density
|
| 58 |
+
ax2.set_xlim(x[0], x[-1])
|
| 59 |
+
prob_max = np.max(prob) * 1.1
|
| 60 |
+
ax2.set_ylim(0, prob_max)
|
| 61 |
+
ax2.set_ylabel('|ψ(x,t)|²')
|
| 62 |
+
ax2.set_title('Probability Density')
|
| 63 |
+
ax2.grid(True, alpha=0.3)
|
| 64 |
+
|
| 65 |
+
# Plot potential well (scaled for background)
|
| 66 |
+
V_scaled_prob = V / np.max(V) * prob_max * 0.3
|
| 67 |
+
ax2.fill_between(x, V_scaled_prob, alpha=0.2, color=color_potential)
|
| 68 |
+
|
| 69 |
+
prob_line, = ax2.plot([], [], color=color_prob, linewidth=2, label='|ψ|²')
|
| 70 |
+
ax2.legend(loc='upper right')
|
| 71 |
+
|
| 72 |
+
# Subplot 3: Energy over time
|
| 73 |
+
ax3.set_xlim(t[0], t[-1])
|
| 74 |
+
E_mean = np.mean(energy)
|
| 75 |
+
E_range = np.max(energy) - np.min(energy)
|
| 76 |
+
if E_range > 0:
|
| 77 |
+
ax3.set_ylim(np.min(energy) - 0.1*E_range, np.max(energy) + 0.1*E_range)
|
| 78 |
+
else:
|
| 79 |
+
ax3.set_ylim(E_mean - 0.1*abs(E_mean), E_mean + 0.1*abs(E_mean))
|
| 80 |
+
|
| 81 |
+
ax3.set_xlabel('Time t')
|
| 82 |
+
ax3.set_ylabel('Total Energy')
|
| 83 |
+
ax3.set_title('Energy Conservation')
|
| 84 |
+
ax3.grid(True, alpha=0.3)
|
| 85 |
+
|
| 86 |
+
# Plot full energy trace as background
|
| 87 |
+
ax3.plot(t, energy, 'k-', alpha=0.3, linewidth=1)
|
| 88 |
+
ax3.axhline(E_mean, color='red', linestyle='--', alpha=0.7, linewidth=1)
|
| 89 |
+
|
| 90 |
+
# Current energy point
|
| 91 |
+
energy_point, = ax3.plot([], [], 'o', color='darkgreen', markersize=8)
|
| 92 |
+
energy_line, = ax3.plot([], [], color='darkgreen', linewidth=2)
|
| 93 |
+
|
| 94 |
+
# Time text
|
| 95 |
+
time_text = fig.text(0.02, 0.02, '', fontsize=12, fontweight='bold',
|
| 96 |
+
bbox=dict(boxstyle="round,pad=0.3", facecolor='yellow', alpha=0.7))
|
| 97 |
+
|
| 98 |
+
# Store fill object
|
| 99 |
+
prob_fill = None
|
| 100 |
+
|
| 101 |
+
def animate(frame):
|
| 102 |
+
"""Animation function"""
|
| 103 |
+
nonlocal prob_fill
|
| 104 |
+
|
| 105 |
+
# Update wavefunction components
|
| 106 |
+
real_line.set_data(x, psi_r[frame])
|
| 107 |
+
imag_line.set_data(x, psi_i[frame])
|
| 108 |
+
|
| 109 |
+
# Update probability density
|
| 110 |
+
prob_line.set_data(x, prob[frame])
|
| 111 |
+
|
| 112 |
+
# Remove old fill and create new one
|
| 113 |
+
if prob_fill is not None:
|
| 114 |
+
prob_fill.remove()
|
| 115 |
+
prob_fill = ax2.fill_between(x, prob[frame], alpha=0.3, color=color_prob)
|
| 116 |
+
|
| 117 |
+
# Update energy plot
|
| 118 |
+
current_t = t[:frame+1]
|
| 119 |
+
current_e = energy[:frame+1]
|
| 120 |
+
energy_line.set_data(current_t, current_e)
|
| 121 |
+
energy_point.set_data([t[frame]], [energy[frame]])
|
| 122 |
+
|
| 123 |
+
# Update time display
|
| 124 |
+
time_text.set_text(f'Time: {t[frame]:.3f} / {t[-1]:.3f}')
|
| 125 |
+
|
| 126 |
+
return real_line, imag_line, prob_line, energy_line, energy_point, time_text
|
| 127 |
+
|
| 128 |
+
# Create animation with more frames for smoother motion
|
| 129 |
+
print(f"Creating animation with {len(t)} frames...")
|
| 130 |
+
anim = animation.FuncAnimation(
|
| 131 |
+
fig, animate, frames=len(t),
|
| 132 |
+
interval=1000/fps, blit=False, repeat=True # blit=False due to fill_between
|
| 133 |
+
)
|
| 134 |
+
|
| 135 |
+
# Save as GIF
|
| 136 |
+
print(f"Saving animation to {save_path}...")
|
| 137 |
+
anim.save(save_path, writer='pillow', fps=fps)
|
| 138 |
+
plt.close()
|
| 139 |
+
|
| 140 |
+
print(f"Animation saved to {save_path}")
|
| 141 |
+
|
| 142 |
+
|
| 143 |
+
def create_simple_animation(sample, save_path="simple_animation.gif", fps=15):
|
| 144 |
+
"""Create a simpler single-panel animation focusing on probability density"""
|
| 145 |
+
# Extract data
|
| 146 |
+
x = sample['spatial_coordinates']
|
| 147 |
+
t = sample['time_coordinates']
|
| 148 |
+
prob = sample['probability_density']
|
| 149 |
+
V = sample['potential']
|
| 150 |
+
|
| 151 |
+
# Set up single plot
|
| 152 |
+
fig, ax = plt.subplots(figsize=(10, 6))
|
| 153 |
+
ax.set_xlim(x[0], x[-1])
|
| 154 |
+
prob_max = np.max(prob) * 1.1
|
| 155 |
+
ax.set_ylim(0, prob_max)
|
| 156 |
+
ax.set_xlabel('Position x')
|
| 157 |
+
ax.set_ylabel('Probability Density |ψ|²')
|
| 158 |
+
ax.set_title(f'Quantum Wave Packet in Harmonic Oscillator\n' +
|
| 159 |
+
f'ℏ={sample["hbar"]}, m={sample["mass"]}, ω={sample["omega"]}')
|
| 160 |
+
ax.grid(True, alpha=0.3)
|
| 161 |
+
|
| 162 |
+
# Plot potential well (scaled)
|
| 163 |
+
V_scaled = V / np.max(V) * prob_max * 0.3
|
| 164 |
+
ax.fill_between(x, V_scaled, alpha=0.2, color='red', label='V(x) (scaled)')
|
| 165 |
+
ax.plot(x, V_scaled, 'r--', alpha=0.7, linewidth=1)
|
| 166 |
+
|
| 167 |
+
# Initialize probability line
|
| 168 |
+
prob_line, = ax.plot([], [], 'b-', linewidth=3, label='|ψ(x,t)|²')
|
| 169 |
+
|
| 170 |
+
# Time text
|
| 171 |
+
time_text = ax.text(0.02, 0.95, '', transform=ax.transAxes, fontsize=12,
|
| 172 |
+
bbox=dict(boxstyle="round", facecolor='white', alpha=0.8))
|
| 173 |
+
|
| 174 |
+
ax.legend()
|
| 175 |
+
|
| 176 |
+
# Store fill object
|
| 177 |
+
prob_fill = None
|
| 178 |
+
|
| 179 |
+
def animate(frame):
|
| 180 |
+
"""Simple animation function"""
|
| 181 |
+
nonlocal prob_fill
|
| 182 |
+
|
| 183 |
+
# Update probability line
|
| 184 |
+
prob_line.set_data(x, prob[frame])
|
| 185 |
+
|
| 186 |
+
# Remove previous fill if it exists
|
| 187 |
+
if prob_fill is not None:
|
| 188 |
+
prob_fill.remove()
|
| 189 |
+
|
| 190 |
+
# Create new fill
|
| 191 |
+
prob_fill = ax.fill_between(x, prob[frame], alpha=0.4, color='blue')
|
| 192 |
+
|
| 193 |
+
# Update time text
|
| 194 |
+
time_text.set_text(f'Time: {t[frame]:.3f}')
|
| 195 |
+
return prob_line, time_text
|
| 196 |
+
|
| 197 |
+
# Create animation
|
| 198 |
+
anim = animation.FuncAnimation(
|
| 199 |
+
fig, animate, frames=len(t),
|
| 200 |
+
interval=1000/fps, blit=False, repeat=True
|
| 201 |
+
)
|
| 202 |
+
|
| 203 |
+
# Save as GIF
|
| 204 |
+
anim.save(save_path, writer='pillow', fps=fps)
|
| 205 |
+
plt.close()
|
| 206 |
+
|
| 207 |
+
print(f"Simple animation saved to {save_path}")
|
| 208 |
+
|
| 209 |
+
|
| 210 |
+
if __name__ == "__main__":
|
| 211 |
+
# Set random seed for reproducibility
|
| 212 |
+
np.random.seed(42)
|
| 213 |
+
|
| 214 |
+
# Create dataset
|
| 215 |
+
dataset = SchrodingerDataset(
|
| 216 |
+
Lx=20.0,
|
| 217 |
+
Nx=128, # Lower resolution for faster animation generation
|
| 218 |
+
stop_sim_time=3.0,
|
| 219 |
+
timestep=2e-3 # Slightly larger timestep for fewer frames
|
| 220 |
+
)
|
| 221 |
+
|
| 222 |
+
# Generate a single sample
|
| 223 |
+
sample = next(iter(dataset))
|
| 224 |
+
|
| 225 |
+
print("Creating animations...")
|
| 226 |
+
print(f"Time steps: {len(sample['time_coordinates'])}")
|
| 227 |
+
print(f"Spatial points: {len(sample['spatial_coordinates'])}")
|
| 228 |
+
|
| 229 |
+
# Create both animations
|
| 230 |
+
create_simple_animation(sample, "simple_animation.gif", fps=12)
|
| 231 |
+
create_schrodinger_animation(sample, "sample_animation.gif", fps=10)
|
plot_sample.py
ADDED
|
@@ -0,0 +1,182 @@
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|
|
|
|
| 1 |
+
#!/usr/bin/env python3
|
| 2 |
+
"""
|
| 3 |
+
Plot a single sample from the Schrödinger equation dataset.
|
| 4 |
+
|
| 5 |
+
Visualizes quantum wave packet evolution including:
|
| 6 |
+
- Real and imaginary parts
|
| 7 |
+
- Probability density |ψ|²
|
| 8 |
+
- Potential well
|
| 9 |
+
- Energy conservation
|
| 10 |
+
"""
|
| 11 |
+
|
| 12 |
+
import numpy as np
|
| 13 |
+
import matplotlib.pyplot as plt
|
| 14 |
+
from dataset import SchrodingerDataset
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
def plot_schrodinger_sample(sample, save_path="sample_plot.png"):
|
| 18 |
+
"""Plot a single sample from the Schrödinger dataset"""
|
| 19 |
+
fig = plt.figure(figsize=(16, 12))
|
| 20 |
+
|
| 21 |
+
# Create subplot layout
|
| 22 |
+
gs = fig.add_gridspec(3, 2, height_ratios=[1, 1, 0.8], hspace=0.3, wspace=0.3)
|
| 23 |
+
|
| 24 |
+
# Extract data
|
| 25 |
+
x = sample["spatial_coordinates"]
|
| 26 |
+
t = sample["time_coordinates"]
|
| 27 |
+
psi_r = sample["psi_r_trajectory"]
|
| 28 |
+
psi_i = sample["psi_i_trajectory"]
|
| 29 |
+
prob = sample["probability_density"]
|
| 30 |
+
V = sample["potential"]
|
| 31 |
+
energy = sample["total_energy"]
|
| 32 |
+
|
| 33 |
+
# Colors for consistency
|
| 34 |
+
color_real = "#1f77b4"
|
| 35 |
+
color_imag = "#ff7f0e"
|
| 36 |
+
color_prob = "#2ca02c"
|
| 37 |
+
color_potential = "#d62728"
|
| 38 |
+
|
| 39 |
+
# Plot 1: Initial and final wavefunction components
|
| 40 |
+
ax1 = fig.add_subplot(gs[0, 0])
|
| 41 |
+
ax1.plot(x, psi_r[0], color=color_real, linewidth=2, label="ψᵣ(x,t=0)")
|
| 42 |
+
ax1.plot(x, psi_i[0], color=color_imag, linewidth=2, label="ψᵢ(x,t=0)")
|
| 43 |
+
ax1.plot(
|
| 44 |
+
x,
|
| 45 |
+
psi_r[-1],
|
| 46 |
+
"--",
|
| 47 |
+
color=color_real,
|
| 48 |
+
alpha=0.7,
|
| 49 |
+
linewidth=2,
|
| 50 |
+
label=f"ψᵣ(x,t={t[-1]:.1f})",
|
| 51 |
+
)
|
| 52 |
+
ax1.plot(
|
| 53 |
+
x,
|
| 54 |
+
psi_i[-1],
|
| 55 |
+
"--",
|
| 56 |
+
color=color_imag,
|
| 57 |
+
alpha=0.7,
|
| 58 |
+
linewidth=2,
|
| 59 |
+
label=f"ψᵢ(x,t={t[-1]:.1f})",
|
| 60 |
+
)
|
| 61 |
+
ax1.set_xlabel("Position x")
|
| 62 |
+
ax1.set_ylabel("ψ(x)")
|
| 63 |
+
ax1.set_title("Wavefunction Components")
|
| 64 |
+
ax1.grid(True, alpha=0.3)
|
| 65 |
+
ax1.legend()
|
| 66 |
+
|
| 67 |
+
# Plot 2: Probability density evolution
|
| 68 |
+
ax2 = fig.add_subplot(gs[0, 1])
|
| 69 |
+
ax2.plot(x, prob[0], color=color_prob, linewidth=2, label="|ψ(x,t=0)|²")
|
| 70 |
+
ax2.plot(
|
| 71 |
+
x,
|
| 72 |
+
prob[-1],
|
| 73 |
+
"--",
|
| 74 |
+
color=color_prob,
|
| 75 |
+
alpha=0.7,
|
| 76 |
+
linewidth=2,
|
| 77 |
+
label=f"|ψ(x,t={t[-1]:.1f})|²",
|
| 78 |
+
)
|
| 79 |
+
|
| 80 |
+
# Add potential well (scaled for visibility)
|
| 81 |
+
V_scaled = V / np.max(V) * np.max(prob[0]) * 0.3
|
| 82 |
+
ax2.fill_between(
|
| 83 |
+
x, V_scaled, alpha=0.2, color=color_potential, label="V(x) (scaled)"
|
| 84 |
+
)
|
| 85 |
+
|
| 86 |
+
ax2.set_xlabel("Position x")
|
| 87 |
+
ax2.set_ylabel("Probability Density")
|
| 88 |
+
ax2.set_title("Quantum Probability |ψ|²")
|
| 89 |
+
ax2.grid(True, alpha=0.3)
|
| 90 |
+
ax2.legend()
|
| 91 |
+
|
| 92 |
+
# Plot 3: Real part space-time evolution
|
| 93 |
+
ax3 = fig.add_subplot(gs[1, 0])
|
| 94 |
+
vmax = np.max(np.abs(psi_r))
|
| 95 |
+
im1 = ax3.pcolormesh(
|
| 96 |
+
x, t, psi_r, cmap="RdBu", vmin=-vmax, vmax=vmax, shading="gouraud"
|
| 97 |
+
)
|
| 98 |
+
ax3.set_xlabel("Position x")
|
| 99 |
+
ax3.set_ylabel("Time t")
|
| 100 |
+
ax3.set_title("Real Part Evolution ψᵣ(x,t)")
|
| 101 |
+
plt.colorbar(im1, ax=ax3, label="ψᵣ")
|
| 102 |
+
|
| 103 |
+
# Plot 4: Imaginary part space-time evolution
|
| 104 |
+
ax4 = fig.add_subplot(gs[1, 1])
|
| 105 |
+
vmax = np.max(np.abs(psi_i))
|
| 106 |
+
im2 = ax4.pcolormesh(
|
| 107 |
+
x, t, psi_i, cmap="RdBu", vmin=-vmax, vmax=vmax, shading="gouraud"
|
| 108 |
+
)
|
| 109 |
+
ax4.set_xlabel("Position x")
|
| 110 |
+
ax4.set_ylabel("Time t")
|
| 111 |
+
ax4.set_title("Imaginary Part Evolution ψᵢ(x,t)")
|
| 112 |
+
plt.colorbar(im2, ax=ax4, label="ψᵢ")
|
| 113 |
+
|
| 114 |
+
# Plot 5: Bottom spanning plots - Probability density heatmap and energy
|
| 115 |
+
ax5 = fig.add_subplot(gs[2, 0])
|
| 116 |
+
im3 = ax5.pcolormesh(x, t, prob, cmap="viridis", shading="gouraud")
|
| 117 |
+
ax5.set_xlabel("Position x")
|
| 118 |
+
ax5.set_ylabel("Time t")
|
| 119 |
+
ax5.set_title("Probability Density Evolution |ψ(x,t)|²")
|
| 120 |
+
plt.colorbar(im3, ax=ax5, label="|ψ|²")
|
| 121 |
+
|
| 122 |
+
# Plot 6: Energy conservation
|
| 123 |
+
ax6 = fig.add_subplot(gs[2, 1])
|
| 124 |
+
ax6.plot(t, energy, "o-", color="darkgreen", linewidth=2, markersize=4)
|
| 125 |
+
ax6.set_xlabel("Time t")
|
| 126 |
+
ax6.set_ylabel("Total Energy")
|
| 127 |
+
ax6.set_title("Energy Conservation")
|
| 128 |
+
ax6.grid(True, alpha=0.3)
|
| 129 |
+
|
| 130 |
+
# Add energy statistics
|
| 131 |
+
E_mean = np.mean(energy)
|
| 132 |
+
E_std = np.std(energy)
|
| 133 |
+
ax6.axhline(
|
| 134 |
+
E_mean, color="red", linestyle="--", alpha=0.7, label=f"Mean: {E_mean:.3f}"
|
| 135 |
+
)
|
| 136 |
+
ax6.text(
|
| 137 |
+
0.02,
|
| 138 |
+
0.95,
|
| 139 |
+
f"σ/⟨E⟩ = {E_std/E_mean:.2e}",
|
| 140 |
+
transform=ax6.transAxes,
|
| 141 |
+
bbox=dict(boxstyle="round", facecolor="white", alpha=0.8),
|
| 142 |
+
verticalalignment="top",
|
| 143 |
+
)
|
| 144 |
+
ax6.legend()
|
| 145 |
+
|
| 146 |
+
# Add main title with physical parameters
|
| 147 |
+
hbar = sample["hbar"]
|
| 148 |
+
mass = sample["mass"]
|
| 149 |
+
omega = sample["omega"]
|
| 150 |
+
fig.suptitle(
|
| 151 |
+
f"Quantum Harmonic Oscillator (ℏ={hbar}, m={mass}, ω={omega})",
|
| 152 |
+
fontsize=16,
|
| 153 |
+
fontweight="bold",
|
| 154 |
+
)
|
| 155 |
+
|
| 156 |
+
plt.savefig(save_path, dpi=200, bbox_inches="tight")
|
| 157 |
+
plt.close()
|
| 158 |
+
|
| 159 |
+
print(f"Schrödinger sample visualization saved to {save_path}")
|
| 160 |
+
|
| 161 |
+
|
| 162 |
+
if __name__ == "__main__":
|
| 163 |
+
# Set random seed for reproducibility
|
| 164 |
+
np.random.seed(42)
|
| 165 |
+
|
| 166 |
+
# Create dataset with reasonable parameters for visualization
|
| 167 |
+
dataset = SchrodingerDataset(Lx=20.0, Nx=256, stop_sim_time=2.0, timestep=1e-3)
|
| 168 |
+
|
| 169 |
+
# Generate a single sample
|
| 170 |
+
dataset_iter = iter(dataset)
|
| 171 |
+
sample = next(dataset_iter)
|
| 172 |
+
sample = next(dataset_iter)
|
| 173 |
+
|
| 174 |
+
print("Sample keys:", list(sample.keys()))
|
| 175 |
+
for key, value in sample.items():
|
| 176 |
+
if hasattr(value, "shape"):
|
| 177 |
+
print(f"{key}: shape {value.shape}")
|
| 178 |
+
else:
|
| 179 |
+
print(f"{key}: {type(value)} - {value}")
|
| 180 |
+
|
| 181 |
+
# Plot the sample
|
| 182 |
+
plot_schrodinger_sample(sample)
|
requirements.txt
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
numpy
|
| 2 |
+
torch
|
| 3 |
+
scikit-learn
|
| 4 |
+
matplotlib
|
| 5 |
+
pyarrow
|
| 6 |
+
pillow
|
| 7 |
+
dedalus
|
sample_animation.gif
ADDED
|
Git LFS Details
|
sample_plot.png
ADDED
|
Git LFS Details
|